Multiple sequence alignment - TraesCS5A01G551100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G551100 chr5A 100.000 2531 0 0 850 3380 704553543 704551013 0.000000e+00 4674.0
1 TraesCS5A01G551100 chr5A 100.000 497 0 0 1 497 704554392 704553896 0.000000e+00 918.0
2 TraesCS5A01G551100 chr5A 78.289 456 84 13 1317 1764 704589849 704590297 2.570000e-71 279.0
3 TraesCS5A01G551100 chr5A 96.774 93 2 1 854 945 42738838 42738930 1.620000e-33 154.0
4 TraesCS5A01G551100 chr5A 93.000 100 6 1 850 948 654411680 654411581 9.770000e-31 145.0
5 TraesCS5A01G551100 chr4B 97.712 1923 33 2 1468 3380 664791587 664789666 0.000000e+00 3297.0
6 TraesCS5A01G551100 chr4B 97.210 466 13 0 1008 1473 664792290 664791825 0.000000e+00 789.0
7 TraesCS5A01G551100 chr4B 94.118 187 6 3 307 493 664792482 664792301 2.570000e-71 279.0
8 TraesCS5A01G551100 chr4B 97.196 107 2 1 850 955 364034953 364034847 2.680000e-41 180.0
9 TraesCS5A01G551100 chr4B 92.157 102 4 3 850 948 364034897 364034997 1.260000e-29 141.0
10 TraesCS5A01G551100 chr2B 85.196 1074 152 3 1345 2411 110033901 110034974 0.000000e+00 1096.0
11 TraesCS5A01G551100 chr2D 82.951 1091 167 10 1330 2410 72483246 72484327 0.000000e+00 966.0
12 TraesCS5A01G551100 chr2D 78.112 932 168 23 1008 1909 72725321 72726246 2.950000e-155 558.0
13 TraesCS5A01G551100 chrUn 82.330 781 126 8 1353 2124 108957046 108956269 0.000000e+00 667.0
14 TraesCS5A01G551100 chr5B 96.262 107 3 1 850 955 346302055 346301949 1.250000e-39 174.0
15 TraesCS5A01G551100 chr5B 94.118 85 3 2 865 948 330859385 330859468 9.840000e-26 128.0
16 TraesCS5A01G551100 chr6B 97.000 100 2 1 850 948 16339398 16339299 2.090000e-37 167.0
17 TraesCS5A01G551100 chr6B 95.283 106 3 2 852 955 82527085 82527190 2.090000e-37 167.0
18 TraesCS5A01G551100 chr3A 91.667 108 8 1 850 956 165333620 165333513 7.560000e-32 148.0
19 TraesCS5A01G551100 chr3B 100.000 28 0 0 850 877 767738919 767738892 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G551100 chr5A 704551013 704554392 3379 True 2796 4674 100.000000 1 3380 2 chr5A.!!$R2 3379
1 TraesCS5A01G551100 chr4B 664789666 664792482 2816 True 1455 3297 96.346667 307 3380 3 chr4B.!!$R2 3073
2 TraesCS5A01G551100 chr2B 110033901 110034974 1073 False 1096 1096 85.196000 1345 2411 1 chr2B.!!$F1 1066
3 TraesCS5A01G551100 chr2D 72483246 72484327 1081 False 966 966 82.951000 1330 2410 1 chr2D.!!$F1 1080
4 TraesCS5A01G551100 chr2D 72725321 72726246 925 False 558 558 78.112000 1008 1909 1 chr2D.!!$F2 901
5 TraesCS5A01G551100 chrUn 108956269 108957046 777 True 667 667 82.330000 1353 2124 1 chrUn.!!$R1 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.105401 GGGGGAGGGAAGGACTAGAG 60.105 65.0 0.00 0.0 0.00 2.43 F
874 875 0.108396 TGTGTCACTGACATGTGGGG 59.892 55.0 14.95 0.0 44.63 4.96 F
1275 1294 0.036010 CTGGAGGGTGCAGACGAAAT 60.036 55.0 0.00 0.0 38.14 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1143 1144 0.468029 GGATCCAATTCCATGGCCGT 60.468 55.000 6.96 0.00 40.46 5.68 R
1820 2100 0.745486 GGTAACCATGGGTACGCCAC 60.745 60.000 29.34 14.75 33.12 5.01 R
2909 3207 1.001974 GTCAGCCACCATGTCAGTACA 59.998 52.381 0.00 0.00 40.69 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.344743 TCTTAAGTGAGCACTAGGATTGG 57.655 43.478 3.21 0.00 41.58 3.16
24 25 4.777896 TCTTAAGTGAGCACTAGGATTGGT 59.222 41.667 3.21 0.00 41.58 3.67
25 26 3.618690 AAGTGAGCACTAGGATTGGTC 57.381 47.619 3.21 4.53 41.58 4.02
26 27 1.834263 AGTGAGCACTAGGATTGGTCC 59.166 52.381 0.41 0.00 40.43 4.46
27 28 3.793126 AGTGAGCACTAGGATTGGTCCG 61.793 54.545 0.41 0.00 40.96 4.79
34 35 2.047655 GGATTGGTCCGTGCGTGA 60.048 61.111 0.00 0.00 34.13 4.35
35 36 2.388232 GGATTGGTCCGTGCGTGAC 61.388 63.158 5.18 5.18 34.13 3.67
36 37 1.666553 GATTGGTCCGTGCGTGACA 60.667 57.895 12.54 0.00 34.36 3.58
37 38 1.897398 GATTGGTCCGTGCGTGACAC 61.897 60.000 12.54 0.00 46.45 3.67
45 46 4.927782 TGCGTGACACACAGCCCC 62.928 66.667 6.37 0.00 34.76 5.80
47 48 4.602259 CGTGACACACAGCCCCGT 62.602 66.667 6.37 0.00 33.40 5.28
48 49 2.665185 GTGACACACAGCCCCGTC 60.665 66.667 0.00 0.00 34.08 4.79
49 50 4.293648 TGACACACAGCCCCGTCG 62.294 66.667 0.00 0.00 0.00 5.12
77 78 4.821589 CGGCCGGGCTTCACTCTC 62.822 72.222 27.04 0.00 0.00 3.20
78 79 4.475135 GGCCGGGCTTCACTCTCC 62.475 72.222 22.87 0.00 0.00 3.71
79 80 3.706373 GCCGGGCTTCACTCTCCA 61.706 66.667 12.87 0.00 0.00 3.86
80 81 2.581354 CCGGGCTTCACTCTCCAG 59.419 66.667 0.00 0.00 0.00 3.86
81 82 2.286523 CCGGGCTTCACTCTCCAGT 61.287 63.158 0.00 0.00 0.00 4.00
88 89 2.969016 CACTCTCCAGTGCGCTCT 59.031 61.111 9.73 7.80 43.77 4.09
89 90 1.445754 CACTCTCCAGTGCGCTCTG 60.446 63.158 28.06 28.06 43.77 3.35
116 117 4.730917 GGGGGAGGGAAGGACTAG 57.269 66.667 0.00 0.00 0.00 2.57
117 118 2.025236 GGGGGAGGGAAGGACTAGA 58.975 63.158 0.00 0.00 0.00 2.43
118 119 0.105401 GGGGGAGGGAAGGACTAGAG 60.105 65.000 0.00 0.00 0.00 2.43
119 120 0.935194 GGGGAGGGAAGGACTAGAGA 59.065 60.000 0.00 0.00 0.00 3.10
120 121 1.411930 GGGGAGGGAAGGACTAGAGAC 60.412 61.905 0.00 0.00 0.00 3.36
121 122 1.411930 GGGAGGGAAGGACTAGAGACC 60.412 61.905 0.00 0.00 0.00 3.85
122 123 1.411930 GGAGGGAAGGACTAGAGACCC 60.412 61.905 0.00 0.00 37.79 4.46
123 124 0.259356 AGGGAAGGACTAGAGACCCG 59.741 60.000 0.00 0.00 41.81 5.28
124 125 1.393487 GGGAAGGACTAGAGACCCGC 61.393 65.000 0.00 0.00 0.00 6.13
125 126 0.396001 GGAAGGACTAGAGACCCGCT 60.396 60.000 0.00 0.00 0.00 5.52
126 127 1.133853 GGAAGGACTAGAGACCCGCTA 60.134 57.143 0.00 0.00 0.00 4.26
127 128 1.948834 GAAGGACTAGAGACCCGCTAC 59.051 57.143 0.00 0.00 0.00 3.58
128 129 0.179051 AGGACTAGAGACCCGCTACG 60.179 60.000 0.00 0.00 0.00 3.51
129 130 0.463474 GGACTAGAGACCCGCTACGT 60.463 60.000 0.00 0.00 0.00 3.57
130 131 0.936600 GACTAGAGACCCGCTACGTC 59.063 60.000 0.00 0.00 0.00 4.34
131 132 0.809241 ACTAGAGACCCGCTACGTCG 60.809 60.000 0.00 0.00 35.33 5.12
139 140 4.430765 CGCTACGTCGGCAAGGGT 62.431 66.667 12.68 0.00 0.00 4.34
140 141 2.047560 GCTACGTCGGCAAGGGTT 60.048 61.111 8.30 0.00 0.00 4.11
141 142 1.216178 GCTACGTCGGCAAGGGTTA 59.784 57.895 8.30 0.00 0.00 2.85
142 143 0.804933 GCTACGTCGGCAAGGGTTAG 60.805 60.000 8.30 0.00 0.00 2.34
143 144 0.813184 CTACGTCGGCAAGGGTTAGA 59.187 55.000 0.00 0.00 0.00 2.10
144 145 0.527565 TACGTCGGCAAGGGTTAGAC 59.472 55.000 0.00 0.00 0.00 2.59
145 146 1.804326 CGTCGGCAAGGGTTAGACG 60.804 63.158 1.99 1.99 46.32 4.18
146 147 2.098831 GTCGGCAAGGGTTAGACGC 61.099 63.158 0.00 0.00 0.00 5.19
147 148 3.186047 CGGCAAGGGTTAGACGCG 61.186 66.667 3.53 3.53 36.04 6.01
148 149 2.818274 GGCAAGGGTTAGACGCGG 60.818 66.667 12.47 0.00 36.04 6.46
149 150 2.818274 GCAAGGGTTAGACGCGGG 60.818 66.667 12.47 0.00 36.04 6.13
150 151 2.660802 CAAGGGTTAGACGCGGGT 59.339 61.111 12.47 4.12 36.04 5.28
151 152 1.447314 CAAGGGTTAGACGCGGGTC 60.447 63.158 23.85 23.85 43.76 4.46
152 153 2.653087 AAGGGTTAGACGCGGGTCC 61.653 63.158 26.94 13.69 44.54 4.46
153 154 4.152964 GGGTTAGACGCGGGTCCC 62.153 72.222 26.94 20.55 44.54 4.46
154 155 4.152964 GGTTAGACGCGGGTCCCC 62.153 72.222 26.94 20.23 44.54 4.81
155 156 3.073101 GTTAGACGCGGGTCCCCT 61.073 66.667 26.94 12.92 44.54 4.79
156 157 2.284112 TTAGACGCGGGTCCCCTT 60.284 61.111 26.94 12.57 44.54 3.95
157 158 2.353610 TTAGACGCGGGTCCCCTTC 61.354 63.158 26.94 3.80 44.54 3.46
161 162 4.692475 CGCGGGTCCCCTTCGTTT 62.692 66.667 1.00 0.00 0.00 3.60
162 163 2.664398 GCGGGTCCCCTTCGTTTA 59.336 61.111 1.00 0.00 0.00 2.01
163 164 1.742880 GCGGGTCCCCTTCGTTTAC 60.743 63.158 1.00 0.00 0.00 2.01
164 165 1.078918 CGGGTCCCCTTCGTTTACC 60.079 63.158 1.00 0.00 0.00 2.85
165 166 1.078918 GGGTCCCCTTCGTTTACCG 60.079 63.158 0.00 0.00 38.13 4.02
166 167 1.742880 GGTCCCCTTCGTTTACCGC 60.743 63.158 0.00 0.00 36.19 5.68
167 168 1.294459 GTCCCCTTCGTTTACCGCT 59.706 57.895 0.00 0.00 36.19 5.52
168 169 0.321034 GTCCCCTTCGTTTACCGCTT 60.321 55.000 0.00 0.00 36.19 4.68
169 170 0.397564 TCCCCTTCGTTTACCGCTTT 59.602 50.000 0.00 0.00 36.19 3.51
170 171 0.519961 CCCCTTCGTTTACCGCTTTG 59.480 55.000 0.00 0.00 36.19 2.77
171 172 1.232119 CCCTTCGTTTACCGCTTTGT 58.768 50.000 0.00 0.00 36.19 2.83
172 173 1.069500 CCCTTCGTTTACCGCTTTGTG 60.069 52.381 0.00 0.00 36.19 3.33
173 174 1.600485 CCTTCGTTTACCGCTTTGTGT 59.400 47.619 0.00 0.00 36.19 3.72
174 175 2.801679 CCTTCGTTTACCGCTTTGTGTA 59.198 45.455 0.00 0.00 36.19 2.90
175 176 3.120786 CCTTCGTTTACCGCTTTGTGTAG 60.121 47.826 0.00 0.00 36.19 2.74
176 177 2.406130 TCGTTTACCGCTTTGTGTAGG 58.594 47.619 0.00 0.00 36.19 3.18
177 178 1.461897 CGTTTACCGCTTTGTGTAGGG 59.538 52.381 0.00 0.00 0.00 3.53
178 179 2.769893 GTTTACCGCTTTGTGTAGGGA 58.230 47.619 0.00 0.00 0.00 4.20
179 180 2.740447 GTTTACCGCTTTGTGTAGGGAG 59.260 50.000 0.00 0.00 0.00 4.30
180 181 1.636148 TACCGCTTTGTGTAGGGAGT 58.364 50.000 0.00 0.00 0.00 3.85
181 182 0.763035 ACCGCTTTGTGTAGGGAGTT 59.237 50.000 0.00 0.00 0.00 3.01
182 183 1.972795 ACCGCTTTGTGTAGGGAGTTA 59.027 47.619 0.00 0.00 0.00 2.24
183 184 2.028385 ACCGCTTTGTGTAGGGAGTTAG 60.028 50.000 0.00 0.00 0.00 2.34
184 185 2.028385 CCGCTTTGTGTAGGGAGTTAGT 60.028 50.000 0.00 0.00 0.00 2.24
185 186 3.251571 CGCTTTGTGTAGGGAGTTAGTC 58.748 50.000 0.00 0.00 0.00 2.59
186 187 3.251571 GCTTTGTGTAGGGAGTTAGTCG 58.748 50.000 0.00 0.00 0.00 4.18
187 188 3.305881 GCTTTGTGTAGGGAGTTAGTCGT 60.306 47.826 0.00 0.00 0.00 4.34
188 189 4.082571 GCTTTGTGTAGGGAGTTAGTCGTA 60.083 45.833 0.00 0.00 0.00 3.43
189 190 5.376854 TTTGTGTAGGGAGTTAGTCGTAC 57.623 43.478 0.00 0.00 0.00 3.67
190 191 4.019792 TGTGTAGGGAGTTAGTCGTACA 57.980 45.455 0.00 0.00 33.60 2.90
191 192 4.005650 TGTGTAGGGAGTTAGTCGTACAG 58.994 47.826 0.00 0.00 35.71 2.74
192 193 4.006319 GTGTAGGGAGTTAGTCGTACAGT 58.994 47.826 0.00 0.00 35.71 3.55
193 194 4.457257 GTGTAGGGAGTTAGTCGTACAGTT 59.543 45.833 0.00 0.00 35.71 3.16
194 195 5.048434 GTGTAGGGAGTTAGTCGTACAGTTT 60.048 44.000 0.00 0.00 35.71 2.66
195 196 5.536161 TGTAGGGAGTTAGTCGTACAGTTTT 59.464 40.000 0.00 0.00 32.65 2.43
196 197 4.879598 AGGGAGTTAGTCGTACAGTTTTG 58.120 43.478 0.00 0.00 0.00 2.44
197 198 4.343239 AGGGAGTTAGTCGTACAGTTTTGT 59.657 41.667 0.00 0.00 41.39 2.83
198 199 5.052481 GGGAGTTAGTCGTACAGTTTTGTT 58.948 41.667 0.00 0.00 38.76 2.83
199 200 6.040842 AGGGAGTTAGTCGTACAGTTTTGTTA 59.959 38.462 0.00 0.00 38.76 2.41
200 201 6.870439 GGGAGTTAGTCGTACAGTTTTGTTAT 59.130 38.462 0.00 0.00 38.76 1.89
201 202 7.386025 GGGAGTTAGTCGTACAGTTTTGTTATT 59.614 37.037 0.00 0.00 38.76 1.40
202 203 8.768019 GGAGTTAGTCGTACAGTTTTGTTATTT 58.232 33.333 0.00 0.00 38.76 1.40
204 205 9.925268 AGTTAGTCGTACAGTTTTGTTATTTTG 57.075 29.630 0.00 0.00 38.76 2.44
205 206 9.706846 GTTAGTCGTACAGTTTTGTTATTTTGT 57.293 29.630 0.00 0.00 38.76 2.83
206 207 9.705471 TTAGTCGTACAGTTTTGTTATTTTGTG 57.295 29.630 0.00 0.00 38.76 3.33
207 208 7.754625 AGTCGTACAGTTTTGTTATTTTGTGT 58.245 30.769 0.00 0.00 38.76 3.72
208 209 8.238631 AGTCGTACAGTTTTGTTATTTTGTGTT 58.761 29.630 0.00 0.00 38.76 3.32
209 210 8.852380 GTCGTACAGTTTTGTTATTTTGTGTTT 58.148 29.630 0.00 0.00 38.76 2.83
210 211 9.408069 TCGTACAGTTTTGTTATTTTGTGTTTT 57.592 25.926 0.00 0.00 38.76 2.43
217 218 9.762062 GTTTTGTTATTTTGTGTTTTAACAGGG 57.238 29.630 0.00 0.00 40.05 4.45
218 219 9.720769 TTTTGTTATTTTGTGTTTTAACAGGGA 57.279 25.926 0.00 0.00 40.05 4.20
219 220 9.892130 TTTGTTATTTTGTGTTTTAACAGGGAT 57.108 25.926 0.00 0.00 40.05 3.85
220 221 8.879342 TGTTATTTTGTGTTTTAACAGGGATG 57.121 30.769 0.00 0.00 40.05 3.51
221 222 8.478877 TGTTATTTTGTGTTTTAACAGGGATGT 58.521 29.630 0.00 0.00 40.05 3.06
222 223 9.320352 GTTATTTTGTGTTTTAACAGGGATGTT 57.680 29.630 0.00 0.00 40.05 2.71
223 224 9.892130 TTATTTTGTGTTTTAACAGGGATGTTT 57.108 25.926 0.00 0.00 40.05 2.83
227 228 9.968870 TTTGTGTTTTAACAGGGATGTTTATAC 57.031 29.630 0.00 0.00 40.05 1.47
228 229 8.693120 TGTGTTTTAACAGGGATGTTTATACA 57.307 30.769 0.00 0.00 40.05 2.29
229 230 9.132923 TGTGTTTTAACAGGGATGTTTATACAA 57.867 29.630 0.00 0.00 40.05 2.41
234 235 9.535170 TTTAACAGGGATGTTTATACAATTGGA 57.465 29.630 10.83 0.10 37.91 3.53
235 236 7.645058 AACAGGGATGTTTATACAATTGGAG 57.355 36.000 10.83 0.00 37.91 3.86
236 237 6.969043 ACAGGGATGTTTATACAATTGGAGA 58.031 36.000 10.83 0.00 37.91 3.71
237 238 7.056635 ACAGGGATGTTTATACAATTGGAGAG 58.943 38.462 10.83 0.00 37.91 3.20
238 239 6.488006 CAGGGATGTTTATACAATTGGAGAGG 59.512 42.308 10.83 0.00 37.91 3.69
239 240 5.241728 GGGATGTTTATACAATTGGAGAGGC 59.758 44.000 10.83 0.00 37.91 4.70
240 241 5.827797 GGATGTTTATACAATTGGAGAGGCA 59.172 40.000 10.83 2.02 37.91 4.75
241 242 6.016777 GGATGTTTATACAATTGGAGAGGCAG 60.017 42.308 10.83 0.00 37.91 4.85
242 243 5.815581 TGTTTATACAATTGGAGAGGCAGT 58.184 37.500 10.83 0.00 0.00 4.40
243 244 5.880332 TGTTTATACAATTGGAGAGGCAGTC 59.120 40.000 10.83 0.00 0.00 3.51
244 245 5.957771 TTATACAATTGGAGAGGCAGTCT 57.042 39.130 10.83 0.00 38.71 3.24
252 253 2.766229 GAGGCAGTCTCCCTCCCC 60.766 72.222 0.00 0.00 42.46 4.81
253 254 3.288381 AGGCAGTCTCCCTCCCCT 61.288 66.667 0.00 0.00 0.00 4.79
254 255 1.941820 AGGCAGTCTCCCTCCCCTA 60.942 63.158 0.00 0.00 0.00 3.53
255 256 1.458588 GGCAGTCTCCCTCCCCTAG 60.459 68.421 0.00 0.00 0.00 3.02
256 257 1.621377 GCAGTCTCCCTCCCCTAGA 59.379 63.158 0.00 0.00 0.00 2.43
257 258 0.189822 GCAGTCTCCCTCCCCTAGAT 59.810 60.000 0.00 0.00 0.00 1.98
258 259 2.008242 CAGTCTCCCTCCCCTAGATG 57.992 60.000 0.00 0.00 0.00 2.90
259 260 0.189822 AGTCTCCCTCCCCTAGATGC 59.810 60.000 0.00 0.00 0.00 3.91
260 261 1.153989 TCTCCCTCCCCTAGATGCG 59.846 63.158 0.00 0.00 0.00 4.73
261 262 2.524394 TCCCTCCCCTAGATGCGC 60.524 66.667 0.00 0.00 0.00 6.09
262 263 3.631046 CCCTCCCCTAGATGCGCC 61.631 72.222 4.18 0.00 0.00 6.53
263 264 3.631046 CCTCCCCTAGATGCGCCC 61.631 72.222 4.18 0.00 0.00 6.13
264 265 3.631046 CTCCCCTAGATGCGCCCC 61.631 72.222 4.18 0.00 0.00 5.80
265 266 4.490606 TCCCCTAGATGCGCCCCA 62.491 66.667 4.18 0.00 0.00 4.96
266 267 3.252284 CCCCTAGATGCGCCCCAT 61.252 66.667 4.18 0.00 36.70 4.00
267 268 2.033141 CCCTAGATGCGCCCCATG 59.967 66.667 4.18 0.00 33.29 3.66
268 269 2.822637 CCCTAGATGCGCCCCATGT 61.823 63.158 4.18 0.00 33.29 3.21
269 270 1.149174 CCTAGATGCGCCCCATGTT 59.851 57.895 4.18 0.00 33.29 2.71
270 271 0.466189 CCTAGATGCGCCCCATGTTT 60.466 55.000 4.18 0.00 33.29 2.83
271 272 1.392589 CTAGATGCGCCCCATGTTTT 58.607 50.000 4.18 0.00 33.29 2.43
272 273 1.334869 CTAGATGCGCCCCATGTTTTC 59.665 52.381 4.18 0.00 33.29 2.29
273 274 1.141665 GATGCGCCCCATGTTTTCC 59.858 57.895 4.18 0.00 33.29 3.13
274 275 1.305213 ATGCGCCCCATGTTTTCCT 60.305 52.632 4.18 0.00 31.48 3.36
275 276 1.322538 ATGCGCCCCATGTTTTCCTC 61.323 55.000 4.18 0.00 31.48 3.71
276 277 1.976474 GCGCCCCATGTTTTCCTCA 60.976 57.895 0.00 0.00 0.00 3.86
277 278 1.322538 GCGCCCCATGTTTTCCTCAT 61.323 55.000 0.00 0.00 0.00 2.90
278 279 0.740737 CGCCCCATGTTTTCCTCATC 59.259 55.000 0.00 0.00 0.00 2.92
279 280 1.683011 CGCCCCATGTTTTCCTCATCT 60.683 52.381 0.00 0.00 0.00 2.90
280 281 2.421388 CGCCCCATGTTTTCCTCATCTA 60.421 50.000 0.00 0.00 0.00 1.98
281 282 3.631250 GCCCCATGTTTTCCTCATCTAA 58.369 45.455 0.00 0.00 0.00 2.10
282 283 4.218312 GCCCCATGTTTTCCTCATCTAAT 58.782 43.478 0.00 0.00 0.00 1.73
283 284 4.279420 GCCCCATGTTTTCCTCATCTAATC 59.721 45.833 0.00 0.00 0.00 1.75
284 285 5.448654 CCCCATGTTTTCCTCATCTAATCA 58.551 41.667 0.00 0.00 0.00 2.57
285 286 5.300286 CCCCATGTTTTCCTCATCTAATCAC 59.700 44.000 0.00 0.00 0.00 3.06
286 287 5.887598 CCCATGTTTTCCTCATCTAATCACA 59.112 40.000 0.00 0.00 0.00 3.58
287 288 6.377996 CCCATGTTTTCCTCATCTAATCACAA 59.622 38.462 0.00 0.00 0.00 3.33
288 289 7.069085 CCCATGTTTTCCTCATCTAATCACAAT 59.931 37.037 0.00 0.00 0.00 2.71
289 290 8.133627 CCATGTTTTCCTCATCTAATCACAATC 58.866 37.037 0.00 0.00 0.00 2.67
290 291 7.630242 TGTTTTCCTCATCTAATCACAATCC 57.370 36.000 0.00 0.00 0.00 3.01
291 292 7.174413 TGTTTTCCTCATCTAATCACAATCCA 58.826 34.615 0.00 0.00 0.00 3.41
292 293 7.337689 TGTTTTCCTCATCTAATCACAATCCAG 59.662 37.037 0.00 0.00 0.00 3.86
293 294 6.813293 TTCCTCATCTAATCACAATCCAGA 57.187 37.500 0.00 0.00 0.00 3.86
294 295 7.384524 TTCCTCATCTAATCACAATCCAGAT 57.615 36.000 0.00 0.00 0.00 2.90
295 296 8.496534 TTCCTCATCTAATCACAATCCAGATA 57.503 34.615 0.00 0.00 0.00 1.98
296 297 8.676397 TCCTCATCTAATCACAATCCAGATAT 57.324 34.615 0.00 0.00 0.00 1.63
297 298 9.109246 TCCTCATCTAATCACAATCCAGATATT 57.891 33.333 0.00 0.00 0.00 1.28
298 299 9.736414 CCTCATCTAATCACAATCCAGATATTT 57.264 33.333 0.00 0.00 0.00 1.40
303 304 9.481340 TCTAATCACAATCCAGATATTTCTTCG 57.519 33.333 0.00 0.00 0.00 3.79
304 305 9.481340 CTAATCACAATCCAGATATTTCTTCGA 57.519 33.333 0.00 0.00 0.00 3.71
305 306 8.737168 AATCACAATCCAGATATTTCTTCGAA 57.263 30.769 0.00 0.00 0.00 3.71
306 307 8.737168 ATCACAATCCAGATATTTCTTCGAAA 57.263 30.769 0.00 0.00 0.00 3.46
307 308 8.560355 TCACAATCCAGATATTTCTTCGAAAA 57.440 30.769 0.00 0.00 0.00 2.29
308 309 9.008965 TCACAATCCAGATATTTCTTCGAAAAA 57.991 29.630 0.00 3.81 0.00 1.94
438 439 1.978617 CCGTTGCTTCCCAGCCATT 60.979 57.895 0.00 0.00 46.74 3.16
442 443 0.975887 TTGCTTCCCAGCCATTTTCC 59.024 50.000 0.00 0.00 46.74 3.13
464 465 4.135153 CGTGGTCGGAGCTCCCAG 62.135 72.222 27.20 14.20 34.14 4.45
485 486 1.439644 GAGATCCTGGGTCTCGTGC 59.560 63.158 20.56 0.00 33.48 5.34
486 487 2.022240 GAGATCCTGGGTCTCGTGCC 62.022 65.000 20.56 0.00 33.48 5.01
487 488 2.284625 ATCCTGGGTCTCGTGCCA 60.285 61.111 0.00 0.00 0.00 4.92
488 489 1.690219 GATCCTGGGTCTCGTGCCAT 61.690 60.000 0.00 0.00 0.00 4.40
489 490 1.976132 ATCCTGGGTCTCGTGCCATG 61.976 60.000 0.00 0.00 0.00 3.66
490 491 2.124983 CTGGGTCTCGTGCCATGG 60.125 66.667 7.63 7.63 0.00 3.66
491 492 4.408821 TGGGTCTCGTGCCATGGC 62.409 66.667 30.54 30.54 42.35 4.40
493 494 4.101448 GGTCTCGTGCCATGGCCT 62.101 66.667 33.44 0.00 41.09 5.19
495 496 3.785859 TCTCGTGCCATGGCCTCC 61.786 66.667 33.44 19.63 41.09 4.30
867 868 3.798794 CCCCTTTGTGTCACTGACA 57.201 52.632 7.84 7.84 40.50 3.58
868 869 2.276732 CCCCTTTGTGTCACTGACAT 57.723 50.000 14.95 0.00 44.63 3.06
869 870 1.881973 CCCCTTTGTGTCACTGACATG 59.118 52.381 14.95 6.36 44.63 3.21
870 871 2.575532 CCCTTTGTGTCACTGACATGT 58.424 47.619 14.95 0.00 44.63 3.21
871 872 2.291465 CCCTTTGTGTCACTGACATGTG 59.709 50.000 14.95 6.36 44.63 3.21
872 873 2.291465 CCTTTGTGTCACTGACATGTGG 59.709 50.000 14.95 10.90 44.63 4.17
873 874 1.965935 TTGTGTCACTGACATGTGGG 58.034 50.000 14.95 0.00 44.63 4.61
874 875 0.108396 TGTGTCACTGACATGTGGGG 59.892 55.000 14.95 0.00 44.63 4.96
875 876 0.108585 GTGTCACTGACATGTGGGGT 59.891 55.000 14.95 0.00 44.63 4.95
876 877 0.396435 TGTCACTGACATGTGGGGTC 59.604 55.000 1.15 0.00 37.67 4.46
877 878 0.321653 GTCACTGACATGTGGGGTCC 60.322 60.000 1.15 0.00 38.40 4.46
878 879 1.375908 CACTGACATGTGGGGTCCG 60.376 63.158 1.15 0.00 34.36 4.79
879 880 2.268920 CTGACATGTGGGGTCCGG 59.731 66.667 1.15 0.00 34.36 5.14
880 881 2.528127 TGACATGTGGGGTCCGGT 60.528 61.111 1.15 0.00 34.36 5.28
881 882 2.267961 GACATGTGGGGTCCGGTC 59.732 66.667 1.15 0.00 0.00 4.79
882 883 3.325201 GACATGTGGGGTCCGGTCC 62.325 68.421 9.52 9.52 0.00 4.46
883 884 4.109675 CATGTGGGGTCCGGTCCC 62.110 72.222 27.03 27.03 46.31 4.46
889 890 3.327404 GGGTCCGGTCCCACATGT 61.327 66.667 29.47 0.00 46.30 3.21
890 891 2.267961 GGTCCGGTCCCACATGTC 59.732 66.667 6.44 0.00 0.00 3.06
891 892 2.589157 GGTCCGGTCCCACATGTCA 61.589 63.158 6.44 0.00 0.00 3.58
892 893 1.079127 GTCCGGTCCCACATGTCAG 60.079 63.158 0.00 0.00 0.00 3.51
893 894 1.535444 TCCGGTCCCACATGTCAGT 60.535 57.895 0.00 0.00 0.00 3.41
894 895 1.375908 CCGGTCCCACATGTCAGTG 60.376 63.158 0.00 0.00 39.21 3.66
895 896 1.671166 CGGTCCCACATGTCAGTGA 59.329 57.895 0.00 0.00 42.05 3.41
896 897 0.670546 CGGTCCCACATGTCAGTGAC 60.671 60.000 16.68 16.68 42.05 3.67
897 898 0.396435 GGTCCCACATGTCAGTGACA 59.604 55.000 27.35 27.35 46.90 3.58
898 899 1.512926 GTCCCACATGTCAGTGACAC 58.487 55.000 27.70 9.89 45.65 3.67
899 900 1.127343 TCCCACATGTCAGTGACACA 58.873 50.000 27.70 7.67 45.65 3.72
900 901 1.488393 TCCCACATGTCAGTGACACAA 59.512 47.619 27.70 6.16 45.65 3.33
901 902 2.092699 TCCCACATGTCAGTGACACAAA 60.093 45.455 27.70 5.76 45.65 2.83
902 903 2.033299 CCCACATGTCAGTGACACAAAC 59.967 50.000 27.70 5.92 45.65 2.93
903 904 2.286359 CCACATGTCAGTGACACAAACG 60.286 50.000 27.70 15.51 45.65 3.60
904 905 1.939934 ACATGTCAGTGACACAAACGG 59.060 47.619 27.70 14.71 45.65 4.44
905 906 1.264020 CATGTCAGTGACACAAACGGG 59.736 52.381 27.70 8.12 45.65 5.28
906 907 0.462937 TGTCAGTGACACAAACGGGG 60.463 55.000 22.06 0.00 37.67 5.73
907 908 1.147376 TCAGTGACACAAACGGGGG 59.853 57.895 8.59 0.00 0.00 5.40
908 909 2.203294 AGTGACACAAACGGGGGC 60.203 61.111 8.59 0.00 0.00 5.80
909 910 2.203294 GTGACACAAACGGGGGCT 60.203 61.111 0.00 0.00 0.00 5.19
910 911 1.826487 GTGACACAAACGGGGGCTT 60.826 57.895 0.00 0.00 0.00 4.35
911 912 0.535553 GTGACACAAACGGGGGCTTA 60.536 55.000 0.00 0.00 0.00 3.09
912 913 0.402504 TGACACAAACGGGGGCTTAT 59.597 50.000 0.00 0.00 0.00 1.73
913 914 0.808755 GACACAAACGGGGGCTTATG 59.191 55.000 0.00 0.00 0.00 1.90
914 915 0.402504 ACACAAACGGGGGCTTATGA 59.597 50.000 0.00 0.00 0.00 2.15
915 916 1.005450 ACACAAACGGGGGCTTATGAT 59.995 47.619 0.00 0.00 0.00 2.45
916 917 1.676006 CACAAACGGGGGCTTATGATC 59.324 52.381 0.00 0.00 0.00 2.92
917 918 1.283613 ACAAACGGGGGCTTATGATCA 59.716 47.619 0.00 0.00 0.00 2.92
918 919 2.291282 ACAAACGGGGGCTTATGATCAA 60.291 45.455 0.00 0.00 0.00 2.57
919 920 2.757868 CAAACGGGGGCTTATGATCAAA 59.242 45.455 0.00 0.00 0.00 2.69
920 921 2.348411 ACGGGGGCTTATGATCAAAG 57.652 50.000 0.00 6.40 0.00 2.77
921 922 1.133792 ACGGGGGCTTATGATCAAAGG 60.134 52.381 0.00 0.00 0.00 3.11
922 923 1.332195 GGGGGCTTATGATCAAAGGC 58.668 55.000 23.65 23.65 45.93 4.35
926 927 3.427161 GGCTTATGATCAAAGGCACAC 57.573 47.619 25.28 9.58 45.93 3.82
927 928 2.223340 GGCTTATGATCAAAGGCACACG 60.223 50.000 25.28 0.00 45.93 4.49
928 929 2.677836 GCTTATGATCAAAGGCACACGA 59.322 45.455 0.00 0.00 0.00 4.35
929 930 3.126858 GCTTATGATCAAAGGCACACGAA 59.873 43.478 0.00 0.00 0.00 3.85
930 931 4.651994 CTTATGATCAAAGGCACACGAAC 58.348 43.478 0.00 0.00 0.00 3.95
931 932 2.254546 TGATCAAAGGCACACGAACT 57.745 45.000 0.00 0.00 0.00 3.01
932 933 1.872952 TGATCAAAGGCACACGAACTG 59.127 47.619 0.00 0.00 0.00 3.16
933 934 1.197721 GATCAAAGGCACACGAACTGG 59.802 52.381 0.00 0.00 0.00 4.00
934 935 0.817634 TCAAAGGCACACGAACTGGG 60.818 55.000 0.00 0.00 0.00 4.45
935 936 1.528309 AAAGGCACACGAACTGGGG 60.528 57.895 0.00 0.00 0.00 4.96
936 937 2.976494 AAAGGCACACGAACTGGGGG 62.976 60.000 0.00 0.00 0.00 5.40
953 954 1.970640 GGGGGTTATCATCAAATGCCC 59.029 52.381 0.00 0.00 0.00 5.36
954 955 1.970640 GGGGTTATCATCAAATGCCCC 59.029 52.381 0.00 0.00 46.19 5.80
955 956 2.962859 GGGTTATCATCAAATGCCCCT 58.037 47.619 0.00 0.00 0.00 4.79
956 957 4.112634 GGGTTATCATCAAATGCCCCTA 57.887 45.455 0.00 0.00 0.00 3.53
957 958 4.479158 GGGTTATCATCAAATGCCCCTAA 58.521 43.478 0.00 0.00 0.00 2.69
958 959 4.280929 GGGTTATCATCAAATGCCCCTAAC 59.719 45.833 0.00 0.00 0.00 2.34
959 960 4.280929 GGTTATCATCAAATGCCCCTAACC 59.719 45.833 0.00 0.00 32.63 2.85
960 961 3.979501 ATCATCAAATGCCCCTAACCT 57.020 42.857 0.00 0.00 0.00 3.50
961 962 3.017048 TCATCAAATGCCCCTAACCTG 57.983 47.619 0.00 0.00 0.00 4.00
962 963 2.034124 CATCAAATGCCCCTAACCTGG 58.966 52.381 0.00 0.00 0.00 4.45
973 974 2.932261 CCTAACCTGGCAGGGAATAAC 58.068 52.381 35.34 0.00 40.58 1.89
974 975 2.241176 CCTAACCTGGCAGGGAATAACA 59.759 50.000 35.34 12.14 40.58 2.41
975 976 2.215942 AACCTGGCAGGGAATAACAC 57.784 50.000 35.34 0.00 40.58 3.32
976 977 1.072266 ACCTGGCAGGGAATAACACA 58.928 50.000 35.34 0.00 40.58 3.72
977 978 1.271926 ACCTGGCAGGGAATAACACAC 60.272 52.381 35.34 0.00 40.58 3.82
978 979 1.086696 CTGGCAGGGAATAACACACG 58.913 55.000 6.61 0.00 0.00 4.49
979 980 0.687920 TGGCAGGGAATAACACACGA 59.312 50.000 0.00 0.00 0.00 4.35
980 981 1.072489 TGGCAGGGAATAACACACGAA 59.928 47.619 0.00 0.00 0.00 3.85
981 982 1.467342 GGCAGGGAATAACACACGAAC 59.533 52.381 0.00 0.00 0.00 3.95
982 983 2.423577 GCAGGGAATAACACACGAACT 58.576 47.619 0.00 0.00 0.00 3.01
983 984 2.159627 GCAGGGAATAACACACGAACTG 59.840 50.000 0.00 0.00 0.00 3.16
984 985 2.742053 CAGGGAATAACACACGAACTGG 59.258 50.000 0.00 0.00 0.00 4.00
985 986 2.081462 GGGAATAACACACGAACTGGG 58.919 52.381 0.00 0.00 0.00 4.45
986 987 2.081462 GGAATAACACACGAACTGGGG 58.919 52.381 0.00 0.00 0.00 4.96
987 988 2.081462 GAATAACACACGAACTGGGGG 58.919 52.381 0.00 0.00 0.00 5.40
1005 1006 1.970640 GGGGGTTATCATCAAATGCCC 59.029 52.381 0.00 0.00 0.00 5.36
1006 1007 1.970640 GGGGTTATCATCAAATGCCCC 59.029 52.381 0.00 0.00 46.19 5.80
1275 1294 0.036010 CTGGAGGGTGCAGACGAAAT 60.036 55.000 0.00 0.00 38.14 2.17
1466 1503 2.786495 CCACGGATAGCTGGCTCGT 61.786 63.158 0.00 0.04 34.19 4.18
1487 1767 1.004821 CCTCGACTACACTGACGATCG 60.005 57.143 14.88 14.88 34.28 3.69
1541 1821 8.624776 CAATCCTTTCTCTAAAGAAGTTGTGTT 58.375 33.333 0.00 0.00 44.14 3.32
1636 1916 1.607801 CCCTGATGACCAGCTCGTCA 61.608 60.000 16.75 16.75 46.36 4.35
1706 1986 1.412453 AAGGGTGTGTGGCTACCGAA 61.412 55.000 0.00 0.00 37.85 4.30
1820 2100 6.767902 TCCTTCAATATAAGCTTTAGTGCCAG 59.232 38.462 3.20 6.31 0.00 4.85
2243 2529 2.810274 TCAGCAAGTCTGTTTCTGCATC 59.190 45.455 0.00 0.00 43.32 3.91
2565 2853 2.602933 CCTTGTTGACACTGCACAATCG 60.603 50.000 0.00 0.00 0.00 3.34
2648 2936 2.295885 GGGAGCTCACTTACTAGCGTA 58.704 52.381 17.19 0.00 43.63 4.42
2683 2971 4.621747 GCAACTGCAGTAGGAGAATGTACT 60.622 45.833 22.01 0.00 41.59 2.73
2712 3000 3.632145 CGTTAGGAAAGGGGATTTGGATG 59.368 47.826 0.00 0.00 0.00 3.51
2721 3009 3.106827 GGGGATTTGGATGTGGAAATGT 58.893 45.455 0.00 0.00 0.00 2.71
2758 3046 5.989777 CGTATAAGGTTTTCCCCACTATCTG 59.010 44.000 0.00 0.00 41.86 2.90
2772 3060 4.274459 CCACTATCTGCAAATCTGTTAGGC 59.726 45.833 0.00 0.00 0.00 3.93
2888 3186 1.247567 CTCGTGTGCCAATCCCTTTT 58.752 50.000 0.00 0.00 0.00 2.27
2977 3275 0.389296 CGCACGTCAAGTACATCCCA 60.389 55.000 0.00 0.00 0.00 4.37
3169 3467 1.066143 CATCACTGCCCGTACCTCTTT 60.066 52.381 0.00 0.00 0.00 2.52
3356 3654 2.317609 CGTCTTGTGCGGGGTTCTG 61.318 63.158 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.248477 ACCAATCCTAGTGCTCACTTAAGAA 59.752 40.000 10.09 0.00 42.54 2.52
1 2 4.777896 ACCAATCCTAGTGCTCACTTAAGA 59.222 41.667 10.09 3.76 42.54 2.10
2 3 5.091261 ACCAATCCTAGTGCTCACTTAAG 57.909 43.478 7.92 0.00 42.54 1.85
3 4 4.081087 GGACCAATCCTAGTGCTCACTTAA 60.081 45.833 7.92 0.00 42.45 1.85
4 5 3.451178 GGACCAATCCTAGTGCTCACTTA 59.549 47.826 7.92 0.00 42.45 2.24
7 8 1.471676 CGGACCAATCCTAGTGCTCAC 60.472 57.143 0.00 0.00 43.73 3.51
8 9 0.824109 CGGACCAATCCTAGTGCTCA 59.176 55.000 0.00 0.00 43.73 4.26
9 10 0.824759 ACGGACCAATCCTAGTGCTC 59.175 55.000 0.00 0.00 43.73 4.26
10 11 0.537188 CACGGACCAATCCTAGTGCT 59.463 55.000 0.00 0.00 43.73 4.40
11 12 3.065575 CACGGACCAATCCTAGTGC 57.934 57.895 0.00 0.00 43.73 4.40
12 13 0.806102 CGCACGGACCAATCCTAGTG 60.806 60.000 0.00 0.00 43.73 2.74
13 14 1.255667 ACGCACGGACCAATCCTAGT 61.256 55.000 0.00 0.00 43.73 2.57
14 15 0.806102 CACGCACGGACCAATCCTAG 60.806 60.000 0.00 0.00 43.73 3.02
15 16 1.216977 CACGCACGGACCAATCCTA 59.783 57.895 0.00 0.00 43.73 2.94
16 17 2.047274 CACGCACGGACCAATCCT 60.047 61.111 0.00 0.00 43.73 3.24
17 18 2.047655 TCACGCACGGACCAATCC 60.048 61.111 0.00 0.00 42.28 3.01
18 19 1.666553 TGTCACGCACGGACCAATC 60.667 57.895 8.49 0.00 34.36 2.67
19 20 1.959226 GTGTCACGCACGGACCAAT 60.959 57.895 8.49 0.00 38.45 3.16
20 21 2.586635 GTGTCACGCACGGACCAA 60.587 61.111 8.49 0.00 38.45 3.67
28 29 4.927782 GGGGCTGTGTGTCACGCA 62.928 66.667 17.88 17.88 37.14 5.24
31 32 2.665185 GACGGGGCTGTGTGTCAC 60.665 66.667 0.00 0.00 34.56 3.67
32 33 4.293648 CGACGGGGCTGTGTGTCA 62.294 66.667 0.00 0.00 0.00 3.58
60 61 4.821589 GAGAGTGAAGCCCGGCCG 62.822 72.222 21.04 21.04 0.00 6.13
61 62 4.475135 GGAGAGTGAAGCCCGGCC 62.475 72.222 5.55 0.00 0.00 6.13
62 63 3.672295 CTGGAGAGTGAAGCCCGGC 62.672 68.421 0.00 0.00 0.00 6.13
63 64 2.286523 ACTGGAGAGTGAAGCCCGG 61.287 63.158 0.00 0.00 0.00 5.73
64 65 3.382111 ACTGGAGAGTGAAGCCCG 58.618 61.111 0.00 0.00 0.00 6.13
72 73 2.969016 CAGAGCGCACTGGAGAGT 59.031 61.111 24.95 0.00 34.64 3.24
99 100 0.105401 CTCTAGTCCTTCCCTCCCCC 60.105 65.000 0.00 0.00 0.00 5.40
100 101 0.935194 TCTCTAGTCCTTCCCTCCCC 59.065 60.000 0.00 0.00 0.00 4.81
101 102 1.411930 GGTCTCTAGTCCTTCCCTCCC 60.412 61.905 0.00 0.00 0.00 4.30
102 103 1.411930 GGGTCTCTAGTCCTTCCCTCC 60.412 61.905 0.00 0.00 32.89 4.30
103 104 1.751382 CGGGTCTCTAGTCCTTCCCTC 60.751 61.905 0.00 0.00 33.41 4.30
104 105 0.259356 CGGGTCTCTAGTCCTTCCCT 59.741 60.000 0.00 0.00 33.41 4.20
105 106 1.393487 GCGGGTCTCTAGTCCTTCCC 61.393 65.000 0.00 0.00 0.00 3.97
106 107 0.396001 AGCGGGTCTCTAGTCCTTCC 60.396 60.000 0.00 0.00 0.00 3.46
107 108 1.948834 GTAGCGGGTCTCTAGTCCTTC 59.051 57.143 0.00 0.00 0.00 3.46
108 109 1.746516 CGTAGCGGGTCTCTAGTCCTT 60.747 57.143 0.00 0.00 0.00 3.36
109 110 0.179051 CGTAGCGGGTCTCTAGTCCT 60.179 60.000 0.00 0.00 0.00 3.85
110 111 0.463474 ACGTAGCGGGTCTCTAGTCC 60.463 60.000 0.00 0.00 0.00 3.85
111 112 0.936600 GACGTAGCGGGTCTCTAGTC 59.063 60.000 0.00 0.00 0.00 2.59
112 113 0.809241 CGACGTAGCGGGTCTCTAGT 60.809 60.000 0.00 0.00 32.24 2.57
113 114 1.933005 CGACGTAGCGGGTCTCTAG 59.067 63.158 0.00 0.00 32.24 2.43
114 115 4.115279 CGACGTAGCGGGTCTCTA 57.885 61.111 0.00 0.00 32.24 2.43
122 123 2.546645 TAACCCTTGCCGACGTAGCG 62.547 60.000 5.66 0.00 0.00 4.26
123 124 0.804933 CTAACCCTTGCCGACGTAGC 60.805 60.000 3.14 3.14 0.00 3.58
124 125 0.813184 TCTAACCCTTGCCGACGTAG 59.187 55.000 0.00 0.00 0.00 3.51
125 126 0.527565 GTCTAACCCTTGCCGACGTA 59.472 55.000 0.00 0.00 0.00 3.57
126 127 1.291272 GTCTAACCCTTGCCGACGT 59.709 57.895 0.00 0.00 0.00 4.34
127 128 1.804326 CGTCTAACCCTTGCCGACG 60.804 63.158 0.00 0.00 40.92 5.12
128 129 2.098831 GCGTCTAACCCTTGCCGAC 61.099 63.158 0.00 0.00 0.00 4.79
129 130 2.263540 GCGTCTAACCCTTGCCGA 59.736 61.111 0.00 0.00 0.00 5.54
130 131 3.186047 CGCGTCTAACCCTTGCCG 61.186 66.667 0.00 0.00 0.00 5.69
131 132 2.818274 CCGCGTCTAACCCTTGCC 60.818 66.667 4.92 0.00 0.00 4.52
132 133 2.818274 CCCGCGTCTAACCCTTGC 60.818 66.667 4.92 0.00 0.00 4.01
133 134 1.447314 GACCCGCGTCTAACCCTTG 60.447 63.158 4.92 0.00 35.99 3.61
134 135 2.653087 GGACCCGCGTCTAACCCTT 61.653 63.158 4.92 0.00 39.15 3.95
135 136 3.073101 GGACCCGCGTCTAACCCT 61.073 66.667 4.92 0.00 39.15 4.34
136 137 4.152964 GGGACCCGCGTCTAACCC 62.153 72.222 4.92 6.85 39.15 4.11
158 159 2.740447 CTCCCTACACAAAGCGGTAAAC 59.260 50.000 0.00 0.00 0.00 2.01
159 160 2.369532 ACTCCCTACACAAAGCGGTAAA 59.630 45.455 0.00 0.00 0.00 2.01
160 161 1.972795 ACTCCCTACACAAAGCGGTAA 59.027 47.619 0.00 0.00 0.00 2.85
161 162 1.636148 ACTCCCTACACAAAGCGGTA 58.364 50.000 0.00 0.00 0.00 4.02
162 163 0.763035 AACTCCCTACACAAAGCGGT 59.237 50.000 0.00 0.00 0.00 5.68
163 164 2.028385 ACTAACTCCCTACACAAAGCGG 60.028 50.000 0.00 0.00 0.00 5.52
164 165 3.251571 GACTAACTCCCTACACAAAGCG 58.748 50.000 0.00 0.00 0.00 4.68
165 166 3.251571 CGACTAACTCCCTACACAAAGC 58.748 50.000 0.00 0.00 0.00 3.51
166 167 4.516365 ACGACTAACTCCCTACACAAAG 57.484 45.455 0.00 0.00 0.00 2.77
167 168 4.826733 TGTACGACTAACTCCCTACACAAA 59.173 41.667 0.00 0.00 0.00 2.83
168 169 4.397420 TGTACGACTAACTCCCTACACAA 58.603 43.478 0.00 0.00 0.00 3.33
169 170 4.005650 CTGTACGACTAACTCCCTACACA 58.994 47.826 0.00 0.00 0.00 3.72
170 171 4.006319 ACTGTACGACTAACTCCCTACAC 58.994 47.826 0.00 0.00 0.00 2.90
171 172 4.292186 ACTGTACGACTAACTCCCTACA 57.708 45.455 0.00 0.00 0.00 2.74
172 173 5.635417 AAACTGTACGACTAACTCCCTAC 57.365 43.478 0.00 0.00 0.00 3.18
173 174 5.536161 ACAAAACTGTACGACTAACTCCCTA 59.464 40.000 0.00 0.00 0.00 3.53
174 175 4.343239 ACAAAACTGTACGACTAACTCCCT 59.657 41.667 0.00 0.00 0.00 4.20
175 176 4.625028 ACAAAACTGTACGACTAACTCCC 58.375 43.478 0.00 0.00 0.00 4.30
176 177 7.880059 ATAACAAAACTGTACGACTAACTCC 57.120 36.000 0.00 0.00 0.00 3.85
178 179 9.925268 CAAAATAACAAAACTGTACGACTAACT 57.075 29.630 0.00 0.00 0.00 2.24
179 180 9.706846 ACAAAATAACAAAACTGTACGACTAAC 57.293 29.630 0.00 0.00 0.00 2.34
180 181 9.705471 CACAAAATAACAAAACTGTACGACTAA 57.295 29.630 0.00 0.00 0.00 2.24
181 182 8.881743 ACACAAAATAACAAAACTGTACGACTA 58.118 29.630 0.00 0.00 0.00 2.59
182 183 7.754625 ACACAAAATAACAAAACTGTACGACT 58.245 30.769 0.00 0.00 0.00 4.18
183 184 7.958112 ACACAAAATAACAAAACTGTACGAC 57.042 32.000 0.00 0.00 0.00 4.34
184 185 8.967552 AAACACAAAATAACAAAACTGTACGA 57.032 26.923 0.00 0.00 0.00 3.43
191 192 9.762062 CCCTGTTAAAACACAAAATAACAAAAC 57.238 29.630 0.00 0.00 37.68 2.43
192 193 9.720769 TCCCTGTTAAAACACAAAATAACAAAA 57.279 25.926 0.00 0.00 37.68 2.44
193 194 9.892130 ATCCCTGTTAAAACACAAAATAACAAA 57.108 25.926 0.00 0.00 37.68 2.83
194 195 9.319143 CATCCCTGTTAAAACACAAAATAACAA 57.681 29.630 0.00 0.00 37.68 2.83
195 196 8.478877 ACATCCCTGTTAAAACACAAAATAACA 58.521 29.630 0.00 0.00 36.92 2.41
196 197 8.880878 ACATCCCTGTTAAAACACAAAATAAC 57.119 30.769 0.00 0.00 34.70 1.89
197 198 9.892130 AAACATCCCTGTTAAAACACAAAATAA 57.108 25.926 0.00 0.00 44.83 1.40
201 202 9.968870 GTATAAACATCCCTGTTAAAACACAAA 57.031 29.630 0.00 0.00 44.83 2.83
202 203 9.132923 TGTATAAACATCCCTGTTAAAACACAA 57.867 29.630 0.00 0.00 44.83 3.33
203 204 8.693120 TGTATAAACATCCCTGTTAAAACACA 57.307 30.769 0.00 0.00 44.83 3.72
208 209 9.535170 TCCAATTGTATAAACATCCCTGTTAAA 57.465 29.630 4.43 0.00 44.83 1.52
209 210 9.184523 CTCCAATTGTATAAACATCCCTGTTAA 57.815 33.333 4.43 0.00 44.83 2.01
210 211 8.553153 TCTCCAATTGTATAAACATCCCTGTTA 58.447 33.333 4.43 0.00 44.83 2.41
212 213 6.969043 TCTCCAATTGTATAAACATCCCTGT 58.031 36.000 4.43 0.00 34.97 4.00
213 214 6.488006 CCTCTCCAATTGTATAAACATCCCTG 59.512 42.308 4.43 0.00 34.97 4.45
214 215 6.605119 CCTCTCCAATTGTATAAACATCCCT 58.395 40.000 4.43 0.00 34.97 4.20
215 216 5.241728 GCCTCTCCAATTGTATAAACATCCC 59.758 44.000 4.43 0.00 34.97 3.85
216 217 5.827797 TGCCTCTCCAATTGTATAAACATCC 59.172 40.000 4.43 0.00 34.97 3.51
217 218 6.543831 ACTGCCTCTCCAATTGTATAAACATC 59.456 38.462 4.43 0.00 34.97 3.06
218 219 6.426587 ACTGCCTCTCCAATTGTATAAACAT 58.573 36.000 4.43 0.00 34.97 2.71
219 220 5.815581 ACTGCCTCTCCAATTGTATAAACA 58.184 37.500 4.43 0.00 0.00 2.83
220 221 6.116126 AGACTGCCTCTCCAATTGTATAAAC 58.884 40.000 4.43 0.00 0.00 2.01
221 222 6.313519 AGACTGCCTCTCCAATTGTATAAA 57.686 37.500 4.43 0.00 0.00 1.40
222 223 5.918608 GAGACTGCCTCTCCAATTGTATAA 58.081 41.667 4.43 0.00 39.87 0.98
223 224 5.537300 GAGACTGCCTCTCCAATTGTATA 57.463 43.478 4.43 0.00 39.87 1.47
224 225 4.414337 GAGACTGCCTCTCCAATTGTAT 57.586 45.455 4.43 0.00 39.87 2.29
225 226 3.895232 GAGACTGCCTCTCCAATTGTA 57.105 47.619 4.43 0.00 39.87 2.41
226 227 2.777832 GAGACTGCCTCTCCAATTGT 57.222 50.000 4.43 0.00 39.87 2.71
238 239 0.189822 ATCTAGGGGAGGGAGACTGC 59.810 60.000 0.00 0.00 36.70 4.40
239 240 2.008242 CATCTAGGGGAGGGAGACTG 57.992 60.000 0.00 0.00 0.00 3.51
240 241 0.189822 GCATCTAGGGGAGGGAGACT 59.810 60.000 0.00 0.00 0.00 3.24
241 242 1.182385 CGCATCTAGGGGAGGGAGAC 61.182 65.000 0.00 0.00 0.00 3.36
242 243 1.153989 CGCATCTAGGGGAGGGAGA 59.846 63.158 0.00 0.00 0.00 3.71
243 244 2.578714 GCGCATCTAGGGGAGGGAG 61.579 68.421 0.30 0.00 0.00 4.30
244 245 2.524394 GCGCATCTAGGGGAGGGA 60.524 66.667 0.30 0.00 0.00 4.20
245 246 3.631046 GGCGCATCTAGGGGAGGG 61.631 72.222 10.83 0.00 0.00 4.30
246 247 3.631046 GGGCGCATCTAGGGGAGG 61.631 72.222 10.83 0.00 0.00 4.30
247 248 3.631046 GGGGCGCATCTAGGGGAG 61.631 72.222 10.83 0.00 0.00 4.30
248 249 3.792325 ATGGGGCGCATCTAGGGGA 62.792 63.158 11.73 0.00 0.00 4.81
249 250 3.252284 ATGGGGCGCATCTAGGGG 61.252 66.667 11.73 0.00 0.00 4.79
250 251 2.033141 CATGGGGCGCATCTAGGG 59.967 66.667 14.79 0.00 0.00 3.53
251 252 0.466189 AAACATGGGGCGCATCTAGG 60.466 55.000 14.79 6.08 0.00 3.02
252 253 1.334869 GAAAACATGGGGCGCATCTAG 59.665 52.381 14.79 6.45 0.00 2.43
253 254 1.388547 GAAAACATGGGGCGCATCTA 58.611 50.000 14.79 0.00 0.00 1.98
254 255 1.322538 GGAAAACATGGGGCGCATCT 61.323 55.000 14.79 0.00 0.00 2.90
255 256 1.141665 GGAAAACATGGGGCGCATC 59.858 57.895 14.79 3.75 0.00 3.91
256 257 1.305213 AGGAAAACATGGGGCGCAT 60.305 52.632 11.73 11.73 0.00 4.73
257 258 1.976474 GAGGAAAACATGGGGCGCA 60.976 57.895 10.83 6.74 0.00 6.09
258 259 1.322538 ATGAGGAAAACATGGGGCGC 61.323 55.000 0.00 0.00 0.00 6.53
259 260 0.740737 GATGAGGAAAACATGGGGCG 59.259 55.000 0.00 0.00 0.00 6.13
260 261 2.149973 AGATGAGGAAAACATGGGGC 57.850 50.000 0.00 0.00 0.00 5.80
261 262 5.300286 GTGATTAGATGAGGAAAACATGGGG 59.700 44.000 0.00 0.00 0.00 4.96
262 263 5.887598 TGTGATTAGATGAGGAAAACATGGG 59.112 40.000 0.00 0.00 0.00 4.00
263 264 7.395190 TTGTGATTAGATGAGGAAAACATGG 57.605 36.000 0.00 0.00 0.00 3.66
264 265 8.133627 GGATTGTGATTAGATGAGGAAAACATG 58.866 37.037 0.00 0.00 0.00 3.21
265 266 7.835682 TGGATTGTGATTAGATGAGGAAAACAT 59.164 33.333 0.00 0.00 0.00 2.71
266 267 7.174413 TGGATTGTGATTAGATGAGGAAAACA 58.826 34.615 0.00 0.00 0.00 2.83
267 268 7.554118 TCTGGATTGTGATTAGATGAGGAAAAC 59.446 37.037 0.00 0.00 0.00 2.43
268 269 7.632861 TCTGGATTGTGATTAGATGAGGAAAA 58.367 34.615 0.00 0.00 0.00 2.29
269 270 7.199167 TCTGGATTGTGATTAGATGAGGAAA 57.801 36.000 0.00 0.00 0.00 3.13
270 271 6.813293 TCTGGATTGTGATTAGATGAGGAA 57.187 37.500 0.00 0.00 0.00 3.36
271 272 8.676397 ATATCTGGATTGTGATTAGATGAGGA 57.324 34.615 0.00 0.00 31.19 3.71
272 273 9.736414 AAATATCTGGATTGTGATTAGATGAGG 57.264 33.333 0.00 0.00 31.19 3.86
277 278 9.481340 CGAAGAAATATCTGGATTGTGATTAGA 57.519 33.333 0.00 0.00 35.59 2.10
278 279 9.481340 TCGAAGAAATATCTGGATTGTGATTAG 57.519 33.333 0.00 0.00 35.59 1.73
279 280 9.830975 TTCGAAGAAATATCTGGATTGTGATTA 57.169 29.630 0.00 0.00 45.90 1.75
280 281 8.737168 TTCGAAGAAATATCTGGATTGTGATT 57.263 30.769 0.00 0.00 45.90 2.57
281 282 8.737168 TTTCGAAGAAATATCTGGATTGTGAT 57.263 30.769 0.00 0.00 45.90 3.06
282 283 8.560355 TTTTCGAAGAAATATCTGGATTGTGA 57.440 30.769 0.00 0.00 45.90 3.58
307 308 4.464069 TGGTGCTGCTTGTTTACTTTTT 57.536 36.364 0.00 0.00 0.00 1.94
308 309 4.464069 TTGGTGCTGCTTGTTTACTTTT 57.536 36.364 0.00 0.00 0.00 2.27
309 310 4.370917 CATTGGTGCTGCTTGTTTACTTT 58.629 39.130 0.00 0.00 0.00 2.66
310 311 3.243839 CCATTGGTGCTGCTTGTTTACTT 60.244 43.478 0.00 0.00 0.00 2.24
311 312 2.297033 CCATTGGTGCTGCTTGTTTACT 59.703 45.455 0.00 0.00 0.00 2.24
312 313 2.676076 CCATTGGTGCTGCTTGTTTAC 58.324 47.619 0.00 0.00 0.00 2.01
313 314 1.000731 GCCATTGGTGCTGCTTGTTTA 59.999 47.619 4.26 0.00 0.00 2.01
314 315 0.249996 GCCATTGGTGCTGCTTGTTT 60.250 50.000 4.26 0.00 0.00 2.83
315 316 1.368579 GCCATTGGTGCTGCTTGTT 59.631 52.632 4.26 0.00 0.00 2.83
316 317 1.189524 ATGCCATTGGTGCTGCTTGT 61.190 50.000 4.26 0.00 0.00 3.16
317 318 0.459585 GATGCCATTGGTGCTGCTTG 60.460 55.000 4.26 0.00 0.00 4.01
318 319 1.895238 GATGCCATTGGTGCTGCTT 59.105 52.632 4.26 0.00 0.00 3.91
414 415 2.032681 GGGAAGCAACGGAGTGCT 59.967 61.111 4.84 4.84 45.00 4.40
464 465 0.106419 ACGAGACCCAGGATCTCCTC 60.106 60.000 5.07 0.00 46.65 3.71
849 850 1.881973 CATGTCAGTGACACAAAGGGG 59.118 52.381 27.70 8.12 45.65 4.79
850 851 2.291465 CACATGTCAGTGACACAAAGGG 59.709 50.000 27.70 15.04 45.65 3.95
851 852 2.291465 CCACATGTCAGTGACACAAAGG 59.709 50.000 27.70 21.15 45.65 3.11
852 853 2.291465 CCCACATGTCAGTGACACAAAG 59.709 50.000 27.70 18.82 45.65 2.77
853 854 2.296792 CCCACATGTCAGTGACACAAA 58.703 47.619 27.70 5.76 45.65 2.83
854 855 1.476652 CCCCACATGTCAGTGACACAA 60.477 52.381 27.70 6.16 45.65 3.33
855 856 0.108396 CCCCACATGTCAGTGACACA 59.892 55.000 27.70 7.67 45.65 3.72
856 857 0.108585 ACCCCACATGTCAGTGACAC 59.891 55.000 27.70 1.06 45.65 3.67
857 858 0.396435 GACCCCACATGTCAGTGACA 59.604 55.000 27.35 27.35 46.90 3.58
858 859 0.321653 GGACCCCACATGTCAGTGAC 60.322 60.000 16.68 16.68 42.05 3.67
859 860 1.826340 CGGACCCCACATGTCAGTGA 61.826 60.000 0.00 0.00 42.05 3.41
860 861 1.375908 CGGACCCCACATGTCAGTG 60.376 63.158 0.00 0.00 39.21 3.66
861 862 2.592993 CCGGACCCCACATGTCAGT 61.593 63.158 0.00 0.00 34.36 3.41
862 863 2.268920 CCGGACCCCACATGTCAG 59.731 66.667 0.00 0.00 34.36 3.51
863 864 2.528127 ACCGGACCCCACATGTCA 60.528 61.111 9.46 0.00 34.36 3.58
864 865 2.267961 GACCGGACCCCACATGTC 59.732 66.667 9.46 0.00 0.00 3.06
865 866 3.327404 GGACCGGACCCCACATGT 61.327 66.667 9.46 0.00 0.00 3.21
866 867 4.109675 GGGACCGGACCCCACATG 62.110 72.222 29.52 0.00 43.81 3.21
873 874 2.267961 GACATGTGGGACCGGACC 59.732 66.667 15.20 15.20 0.00 4.46
874 875 1.079127 CTGACATGTGGGACCGGAC 60.079 63.158 9.46 0.00 0.00 4.79
875 876 1.535444 ACTGACATGTGGGACCGGA 60.535 57.895 9.46 0.00 0.00 5.14
876 877 1.375908 CACTGACATGTGGGACCGG 60.376 63.158 1.15 0.00 34.56 5.28
877 878 0.670546 GTCACTGACATGTGGGACCG 60.671 60.000 1.15 0.00 38.40 4.79
878 879 0.396435 TGTCACTGACATGTGGGACC 59.604 55.000 14.19 0.00 37.67 4.46
879 880 1.202639 TGTGTCACTGACATGTGGGAC 60.203 52.381 14.95 7.42 44.63 4.46
880 881 1.127343 TGTGTCACTGACATGTGGGA 58.873 50.000 14.95 0.00 44.63 4.37
881 882 1.965935 TTGTGTCACTGACATGTGGG 58.034 50.000 14.95 0.00 44.63 4.61
882 883 2.286359 CGTTTGTGTCACTGACATGTGG 60.286 50.000 14.95 0.00 44.63 4.17
883 884 2.286359 CCGTTTGTGTCACTGACATGTG 60.286 50.000 14.95 0.00 44.63 3.21
884 885 1.939934 CCGTTTGTGTCACTGACATGT 59.060 47.619 14.95 0.00 44.63 3.21
885 886 1.264020 CCCGTTTGTGTCACTGACATG 59.736 52.381 14.95 0.00 44.63 3.21
886 887 1.593196 CCCGTTTGTGTCACTGACAT 58.407 50.000 14.95 0.00 44.63 3.06
887 888 0.462937 CCCCGTTTGTGTCACTGACA 60.463 55.000 7.84 7.84 40.50 3.58
888 889 1.164041 CCCCCGTTTGTGTCACTGAC 61.164 60.000 4.27 1.86 0.00 3.51
889 890 1.147376 CCCCCGTTTGTGTCACTGA 59.853 57.895 4.27 0.00 0.00 3.41
890 891 2.551912 GCCCCCGTTTGTGTCACTG 61.552 63.158 4.27 0.00 0.00 3.66
891 892 2.203294 GCCCCCGTTTGTGTCACT 60.203 61.111 4.27 0.00 0.00 3.41
892 893 0.535553 TAAGCCCCCGTTTGTGTCAC 60.536 55.000 0.00 0.00 0.00 3.67
893 894 0.402504 ATAAGCCCCCGTTTGTGTCA 59.597 50.000 0.00 0.00 0.00 3.58
894 895 0.808755 CATAAGCCCCCGTTTGTGTC 59.191 55.000 0.00 0.00 0.00 3.67
895 896 0.402504 TCATAAGCCCCCGTTTGTGT 59.597 50.000 0.00 0.00 0.00 3.72
896 897 1.676006 GATCATAAGCCCCCGTTTGTG 59.324 52.381 0.00 0.00 0.00 3.33
897 898 1.283613 TGATCATAAGCCCCCGTTTGT 59.716 47.619 0.00 0.00 0.00 2.83
898 899 2.051334 TGATCATAAGCCCCCGTTTG 57.949 50.000 0.00 0.00 0.00 2.93
899 900 2.818751 TTGATCATAAGCCCCCGTTT 57.181 45.000 0.00 0.00 0.00 3.60
900 901 2.654863 CTTTGATCATAAGCCCCCGTT 58.345 47.619 0.00 0.00 0.00 4.44
901 902 1.133792 CCTTTGATCATAAGCCCCCGT 60.134 52.381 0.00 0.00 0.00 5.28
902 903 1.609208 CCTTTGATCATAAGCCCCCG 58.391 55.000 0.00 0.00 0.00 5.73
903 904 1.332195 GCCTTTGATCATAAGCCCCC 58.668 55.000 0.00 0.00 0.00 5.40
904 905 1.683385 GTGCCTTTGATCATAAGCCCC 59.317 52.381 0.00 0.00 0.00 5.80
905 906 2.099756 GTGTGCCTTTGATCATAAGCCC 59.900 50.000 0.00 0.00 0.00 5.19
906 907 2.223340 CGTGTGCCTTTGATCATAAGCC 60.223 50.000 0.00 0.00 0.00 4.35
907 908 2.677836 TCGTGTGCCTTTGATCATAAGC 59.322 45.455 0.00 0.00 0.00 3.09
908 909 4.393062 AGTTCGTGTGCCTTTGATCATAAG 59.607 41.667 0.00 3.60 0.00 1.73
909 910 4.154015 CAGTTCGTGTGCCTTTGATCATAA 59.846 41.667 0.00 0.00 0.00 1.90
910 911 3.684305 CAGTTCGTGTGCCTTTGATCATA 59.316 43.478 0.00 0.00 0.00 2.15
911 912 2.485426 CAGTTCGTGTGCCTTTGATCAT 59.515 45.455 0.00 0.00 0.00 2.45
912 913 1.872952 CAGTTCGTGTGCCTTTGATCA 59.127 47.619 0.00 0.00 0.00 2.92
913 914 1.197721 CCAGTTCGTGTGCCTTTGATC 59.802 52.381 0.00 0.00 0.00 2.92
914 915 1.238439 CCAGTTCGTGTGCCTTTGAT 58.762 50.000 0.00 0.00 0.00 2.57
915 916 0.817634 CCCAGTTCGTGTGCCTTTGA 60.818 55.000 0.00 0.00 0.00 2.69
916 917 1.654220 CCCAGTTCGTGTGCCTTTG 59.346 57.895 0.00 0.00 0.00 2.77
917 918 1.528309 CCCCAGTTCGTGTGCCTTT 60.528 57.895 0.00 0.00 0.00 3.11
918 919 2.113139 CCCCAGTTCGTGTGCCTT 59.887 61.111 0.00 0.00 0.00 4.35
919 920 3.953775 CCCCCAGTTCGTGTGCCT 61.954 66.667 0.00 0.00 0.00 4.75
933 934 1.970640 GGGCATTTGATGATAACCCCC 59.029 52.381 0.00 0.00 0.00 5.40
935 936 2.962859 AGGGGCATTTGATGATAACCC 58.037 47.619 0.00 0.00 37.17 4.11
936 937 4.280929 GGTTAGGGGCATTTGATGATAACC 59.719 45.833 0.00 0.00 35.56 2.85
937 938 5.010012 CAGGTTAGGGGCATTTGATGATAAC 59.990 44.000 0.00 0.00 0.00 1.89
938 939 5.139727 CAGGTTAGGGGCATTTGATGATAA 58.860 41.667 0.00 0.00 0.00 1.75
939 940 4.447616 CCAGGTTAGGGGCATTTGATGATA 60.448 45.833 0.00 0.00 0.00 2.15
940 941 3.569491 CAGGTTAGGGGCATTTGATGAT 58.431 45.455 0.00 0.00 0.00 2.45
941 942 2.358090 CCAGGTTAGGGGCATTTGATGA 60.358 50.000 0.00 0.00 0.00 2.92
942 943 2.034124 CCAGGTTAGGGGCATTTGATG 58.966 52.381 0.00 0.00 0.00 3.07
943 944 2.459555 CCAGGTTAGGGGCATTTGAT 57.540 50.000 0.00 0.00 0.00 2.57
944 945 3.998560 CCAGGTTAGGGGCATTTGA 57.001 52.632 0.00 0.00 0.00 2.69
953 954 2.241176 TGTTATTCCCTGCCAGGTTAGG 59.759 50.000 10.47 5.18 31.93 2.69
954 955 3.279434 GTGTTATTCCCTGCCAGGTTAG 58.721 50.000 10.47 0.00 31.93 2.34
955 956 2.645297 TGTGTTATTCCCTGCCAGGTTA 59.355 45.455 10.47 0.00 31.93 2.85
956 957 1.427368 TGTGTTATTCCCTGCCAGGTT 59.573 47.619 10.47 0.00 31.93 3.50
957 958 1.072266 TGTGTTATTCCCTGCCAGGT 58.928 50.000 10.47 0.00 31.93 4.00
958 959 1.463674 GTGTGTTATTCCCTGCCAGG 58.536 55.000 2.91 2.91 34.30 4.45
959 960 1.086696 CGTGTGTTATTCCCTGCCAG 58.913 55.000 0.00 0.00 0.00 4.85
960 961 0.687920 TCGTGTGTTATTCCCTGCCA 59.312 50.000 0.00 0.00 0.00 4.92
961 962 1.467342 GTTCGTGTGTTATTCCCTGCC 59.533 52.381 0.00 0.00 0.00 4.85
962 963 2.159627 CAGTTCGTGTGTTATTCCCTGC 59.840 50.000 0.00 0.00 0.00 4.85
963 964 2.742053 CCAGTTCGTGTGTTATTCCCTG 59.258 50.000 0.00 0.00 0.00 4.45
964 965 2.290071 CCCAGTTCGTGTGTTATTCCCT 60.290 50.000 0.00 0.00 0.00 4.20
965 966 2.081462 CCCAGTTCGTGTGTTATTCCC 58.919 52.381 0.00 0.00 0.00 3.97
966 967 2.081462 CCCCAGTTCGTGTGTTATTCC 58.919 52.381 0.00 0.00 0.00 3.01
967 968 2.081462 CCCCCAGTTCGTGTGTTATTC 58.919 52.381 0.00 0.00 0.00 1.75
968 969 2.194201 CCCCCAGTTCGTGTGTTATT 57.806 50.000 0.00 0.00 0.00 1.40
969 970 3.948735 CCCCCAGTTCGTGTGTTAT 57.051 52.632 0.00 0.00 0.00 1.89
985 986 1.970640 GGGCATTTGATGATAACCCCC 59.029 52.381 0.00 0.00 0.00 5.40
987 988 2.365293 GTGGGGCATTTGATGATAACCC 59.635 50.000 0.00 0.00 37.43 4.11
988 989 2.365293 GGTGGGGCATTTGATGATAACC 59.635 50.000 0.00 0.00 0.00 2.85
989 990 3.068590 CAGGTGGGGCATTTGATGATAAC 59.931 47.826 0.00 0.00 0.00 1.89
990 991 3.298619 CAGGTGGGGCATTTGATGATAA 58.701 45.455 0.00 0.00 0.00 1.75
991 992 2.424667 CCAGGTGGGGCATTTGATGATA 60.425 50.000 0.00 0.00 0.00 2.15
992 993 1.690209 CCAGGTGGGGCATTTGATGAT 60.690 52.381 0.00 0.00 0.00 2.45
993 994 0.324552 CCAGGTGGGGCATTTGATGA 60.325 55.000 0.00 0.00 0.00 2.92
994 995 2.204748 CCAGGTGGGGCATTTGATG 58.795 57.895 0.00 0.00 0.00 3.07
995 996 4.792066 CCAGGTGGGGCATTTGAT 57.208 55.556 0.00 0.00 0.00 2.57
1003 1004 4.864334 GCGATCTGCCAGGTGGGG 62.864 72.222 0.00 0.00 37.76 4.96
1081 1082 4.170062 CGCTTGCATCCACGGCAG 62.170 66.667 0.00 0.00 43.05 4.85
1143 1144 0.468029 GGATCCAATTCCATGGCCGT 60.468 55.000 6.96 0.00 40.46 5.68
1275 1294 6.296026 CCATGGAGATAGGAAAAATTACCGA 58.704 40.000 5.56 0.00 0.00 4.69
1466 1503 2.277969 GATCGTCAGTGTAGTCGAGGA 58.722 52.381 0.00 0.00 35.85 3.71
1487 1767 9.521503 GCAAGAAATAGGTATGAATTTTTCTCC 57.478 33.333 0.00 0.00 33.56 3.71
1706 1986 0.759060 GAAGGGGGTTGTTTGTGGCT 60.759 55.000 0.00 0.00 0.00 4.75
1820 2100 0.745486 GGTAACCATGGGTACGCCAC 60.745 60.000 29.34 14.75 33.12 5.01
2243 2529 2.818921 CATCCTCCTCTATCCCTCCAG 58.181 57.143 0.00 0.00 0.00 3.86
2505 2793 2.812836 ACATGAATGCAGATCACCCA 57.187 45.000 0.00 0.00 0.00 4.51
2565 2853 2.281900 TTAGTGTTGGTGGGCGGC 60.282 61.111 0.00 0.00 0.00 6.53
2648 2936 1.763770 CAGTTGCCTTGGGTCTCCT 59.236 57.895 0.00 0.00 0.00 3.69
2683 2971 1.279846 CCCCTTTCCTAACGGCTGTTA 59.720 52.381 17.09 17.09 39.54 2.41
2729 3017 3.282021 GGGGAAAACCTTATACGGAACC 58.718 50.000 1.56 0.30 40.03 3.62
2758 3046 3.282831 ACAAACGCCTAACAGATTTGC 57.717 42.857 0.00 0.00 34.34 3.68
2772 3060 4.454504 ACTTGGTGGCTAAGAATACAAACG 59.545 41.667 0.00 0.00 0.00 3.60
2831 3129 6.890979 AATTGAGATTATTCTAGCTTGCCC 57.109 37.500 0.00 0.00 30.30 5.36
2909 3207 1.001974 GTCAGCCACCATGTCAGTACA 59.998 52.381 0.00 0.00 40.69 2.90
2977 3275 4.147321 AGATATTGCGCCCTTCATCATTT 58.853 39.130 4.18 0.00 0.00 2.32
3356 3654 1.509004 GGTGACAGCGAGAGACTCC 59.491 63.158 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.