Multiple sequence alignment - TraesCS5A01G550000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G550000 chr5A 100.000 2546 0 0 1 2546 703920618 703918073 0.000000e+00 4702
1 TraesCS5A01G550000 chr5A 95.979 373 12 2 1 370 703949654 703949282 1.010000e-168 603
2 TraesCS5A01G550000 chr5A 94.595 370 20 0 1 370 704128335 704127966 7.900000e-160 573
3 TraesCS5A01G550000 chr5A 94.355 372 19 2 1 370 704014225 704013854 1.020000e-158 569
4 TraesCS5A01G550000 chr5A 94.355 372 19 2 1 370 704258258 704257887 1.020000e-158 569
5 TraesCS5A01G550000 chr5A 94.070 371 21 1 1 370 703961560 703961190 1.710000e-156 562
6 TraesCS5A01G550000 chr5A 93.817 372 21 2 1 370 703955716 703955345 2.210000e-155 558
7 TraesCS5A01G550000 chr5A 93.834 373 20 2 1 370 703967429 703967057 2.210000e-155 558
8 TraesCS5A01G550000 chr5A 93.566 373 21 2 1 370 704097990 704097618 1.030000e-153 553
9 TraesCS5A01G550000 chr5A 93.566 373 21 2 1 370 704206622 704206250 1.030000e-153 553
10 TraesCS5A01G550000 chr6B 96.667 1980 59 6 573 2546 660437743 660435765 0.000000e+00 3284
11 TraesCS5A01G550000 chr1A 96.562 1978 64 3 573 2546 22791529 22793506 0.000000e+00 3273
12 TraesCS5A01G550000 chr3A 96.515 1980 65 3 571 2546 735555339 735557318 0.000000e+00 3271
13 TraesCS5A01G550000 chr3A 96.513 1979 63 4 573 2546 617401023 617403000 0.000000e+00 3267
14 TraesCS5A01G550000 chr3A 94.089 203 12 0 370 572 33890287 33890489 2.460000e-80 309
15 TraesCS5A01G550000 chr3A 93.750 208 10 2 368 572 719734454 719734247 2.460000e-80 309
16 TraesCS5A01G550000 chr6A 96.608 1975 60 6 566 2533 617222877 617220903 0.000000e+00 3269
17 TraesCS5A01G550000 chr6A 96.599 1970 59 7 571 2533 533982324 533980356 0.000000e+00 3260
18 TraesCS5A01G550000 chr6A 96.535 202 6 1 371 572 593798807 593799007 1.460000e-87 333
19 TraesCS5A01G550000 chr3B 96.376 1987 65 6 566 2546 379294086 379296071 0.000000e+00 3264
20 TraesCS5A01G550000 chr7B 96.420 1983 63 6 572 2546 552932144 552930162 0.000000e+00 3262
21 TraesCS5A01G550000 chr7B 93.171 205 12 1 370 572 550445581 550445785 1.480000e-77 300
22 TraesCS5A01G550000 chr7A 96.420 1983 64 6 571 2546 701581939 701583921 0.000000e+00 3262
23 TraesCS5A01G550000 chr6D 96.552 203 7 0 370 572 139980854 139981056 1.130000e-88 337
24 TraesCS5A01G550000 chr2D 96.078 204 8 0 369 572 469256060 469255857 1.460000e-87 333
25 TraesCS5A01G550000 chr1D 94.581 203 11 0 370 572 38814907 38814705 5.290000e-82 315
26 TraesCS5A01G550000 chr5B 94.472 199 11 0 370 568 133872951 133873149 8.850000e-80 307
27 TraesCS5A01G550000 chr3D 93.596 203 13 0 369 571 68049901 68049699 1.140000e-78 303


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G550000 chr5A 703918073 703920618 2545 True 4702 4702 100.000 1 2546 1 chr5A.!!$R1 2545
1 TraesCS5A01G550000 chr6B 660435765 660437743 1978 True 3284 3284 96.667 573 2546 1 chr6B.!!$R1 1973
2 TraesCS5A01G550000 chr1A 22791529 22793506 1977 False 3273 3273 96.562 573 2546 1 chr1A.!!$F1 1973
3 TraesCS5A01G550000 chr3A 735555339 735557318 1979 False 3271 3271 96.515 571 2546 1 chr3A.!!$F3 1975
4 TraesCS5A01G550000 chr3A 617401023 617403000 1977 False 3267 3267 96.513 573 2546 1 chr3A.!!$F2 1973
5 TraesCS5A01G550000 chr6A 617220903 617222877 1974 True 3269 3269 96.608 566 2533 1 chr6A.!!$R2 1967
6 TraesCS5A01G550000 chr6A 533980356 533982324 1968 True 3260 3260 96.599 571 2533 1 chr6A.!!$R1 1962
7 TraesCS5A01G550000 chr3B 379294086 379296071 1985 False 3264 3264 96.376 566 2546 1 chr3B.!!$F1 1980
8 TraesCS5A01G550000 chr7B 552930162 552932144 1982 True 3262 3262 96.420 572 2546 1 chr7B.!!$R1 1974
9 TraesCS5A01G550000 chr7A 701581939 701583921 1982 False 3262 3262 96.420 571 2546 1 chr7A.!!$F1 1975

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.033796 ATCCTTGTGGGCATGTCCTG 60.034 55.0 19.09 5.14 34.39 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 1779 1.591703 CCTGCACTTGGCTCTACGA 59.408 57.895 0.0 0.0 45.15 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.453559 CGAAAGGCGAAGTGGGTAT 57.546 52.632 0.00 0.00 44.57 2.73
24 25 1.006832 CGAAAGGCGAAGTGGGTATG 58.993 55.000 0.00 0.00 44.57 2.39
25 26 1.379527 GAAAGGCGAAGTGGGTATGG 58.620 55.000 0.00 0.00 0.00 2.74
26 27 0.034477 AAAGGCGAAGTGGGTATGGG 60.034 55.000 0.00 0.00 0.00 4.00
27 28 0.912487 AAGGCGAAGTGGGTATGGGA 60.912 55.000 0.00 0.00 0.00 4.37
28 29 0.694444 AGGCGAAGTGGGTATGGGAT 60.694 55.000 0.00 0.00 0.00 3.85
29 30 0.182775 GGCGAAGTGGGTATGGGATT 59.817 55.000 0.00 0.00 0.00 3.01
30 31 1.409661 GGCGAAGTGGGTATGGGATTT 60.410 52.381 0.00 0.00 0.00 2.17
31 32 1.947456 GCGAAGTGGGTATGGGATTTC 59.053 52.381 0.00 0.00 0.00 2.17
32 33 2.682563 GCGAAGTGGGTATGGGATTTCA 60.683 50.000 0.00 0.00 0.00 2.69
33 34 3.820557 CGAAGTGGGTATGGGATTTCAT 58.179 45.455 0.00 0.00 0.00 2.57
34 35 3.565482 CGAAGTGGGTATGGGATTTCATG 59.435 47.826 0.00 0.00 0.00 3.07
35 36 4.685848 CGAAGTGGGTATGGGATTTCATGA 60.686 45.833 0.00 0.00 0.00 3.07
36 37 5.388654 GAAGTGGGTATGGGATTTCATGAT 58.611 41.667 0.00 0.00 0.00 2.45
37 38 4.990526 AGTGGGTATGGGATTTCATGATC 58.009 43.478 0.00 0.00 0.00 2.92
38 39 4.666907 AGTGGGTATGGGATTTCATGATCT 59.333 41.667 0.00 0.00 0.00 2.75
39 40 5.851693 AGTGGGTATGGGATTTCATGATCTA 59.148 40.000 0.00 0.00 0.00 1.98
40 41 6.332635 AGTGGGTATGGGATTTCATGATCTAA 59.667 38.462 0.00 0.00 0.00 2.10
41 42 6.656693 GTGGGTATGGGATTTCATGATCTAAG 59.343 42.308 0.00 0.00 0.00 2.18
42 43 6.562223 TGGGTATGGGATTTCATGATCTAAGA 59.438 38.462 0.00 0.00 0.00 2.10
43 44 7.240405 TGGGTATGGGATTTCATGATCTAAGAT 59.760 37.037 0.00 0.00 0.00 2.40
44 45 8.112183 GGGTATGGGATTTCATGATCTAAGATT 58.888 37.037 0.00 0.00 0.00 2.40
70 71 2.781945 GCATGTGCTTATGGCTAACC 57.218 50.000 0.00 0.00 42.39 2.85
71 72 2.023673 GCATGTGCTTATGGCTAACCA 58.976 47.619 0.00 0.00 44.20 3.67
72 73 2.426738 GCATGTGCTTATGGCTAACCAA 59.573 45.455 0.00 0.00 43.63 3.67
73 74 3.489738 GCATGTGCTTATGGCTAACCAAG 60.490 47.826 0.00 0.00 43.63 3.61
74 75 5.938004 GCATGTGCTTATGGCTAACCAAGT 61.938 45.833 0.00 0.00 43.63 3.16
75 76 7.348524 GCATGTGCTTATGGCTAACCAAGTT 62.349 44.000 0.00 0.00 43.63 2.66
76 77 8.727889 GCATGTGCTTATGGCTAACCAAGTTT 62.728 42.308 0.00 0.00 43.63 2.66
94 95 8.305441 CCAAGTTTGTTGGTTATTGGTTTATC 57.695 34.615 0.00 0.00 33.96 1.75
95 96 7.928706 CCAAGTTTGTTGGTTATTGGTTTATCA 59.071 33.333 0.00 0.00 33.96 2.15
96 97 8.977505 CAAGTTTGTTGGTTATTGGTTTATCAG 58.022 33.333 0.00 0.00 0.00 2.90
97 98 7.151976 AGTTTGTTGGTTATTGGTTTATCAGC 58.848 34.615 0.00 0.00 0.00 4.26
98 99 6.656632 TTGTTGGTTATTGGTTTATCAGCA 57.343 33.333 0.00 0.00 0.00 4.41
99 100 6.849085 TGTTGGTTATTGGTTTATCAGCAT 57.151 33.333 0.00 0.00 31.27 3.79
100 101 6.862209 TGTTGGTTATTGGTTTATCAGCATC 58.138 36.000 0.00 0.00 31.27 3.91
101 102 6.127479 TGTTGGTTATTGGTTTATCAGCATCC 60.127 38.462 0.00 0.00 31.27 3.51
102 103 5.514169 TGGTTATTGGTTTATCAGCATCCA 58.486 37.500 0.00 0.00 31.27 3.41
103 104 5.359576 TGGTTATTGGTTTATCAGCATCCAC 59.640 40.000 0.00 0.00 31.27 4.02
104 105 5.594317 GGTTATTGGTTTATCAGCATCCACT 59.406 40.000 0.00 0.00 31.27 4.00
105 106 6.770785 GGTTATTGGTTTATCAGCATCCACTA 59.229 38.462 0.00 0.00 31.27 2.74
106 107 7.448469 GGTTATTGGTTTATCAGCATCCACTAT 59.552 37.037 0.00 0.00 31.27 2.12
107 108 6.889301 ATTGGTTTATCAGCATCCACTATG 57.111 37.500 0.00 0.00 38.74 2.23
108 109 5.372343 TGGTTTATCAGCATCCACTATGT 57.628 39.130 0.00 0.00 37.93 2.29
109 110 5.125356 TGGTTTATCAGCATCCACTATGTG 58.875 41.667 0.00 0.00 37.93 3.21
110 111 4.023707 GGTTTATCAGCATCCACTATGTGC 60.024 45.833 0.00 0.00 37.93 4.57
111 112 4.420522 TTATCAGCATCCACTATGTGCA 57.579 40.909 0.00 0.00 41.19 4.57
112 113 2.785540 TCAGCATCCACTATGTGCAA 57.214 45.000 0.00 0.00 41.19 4.08
113 114 3.070476 TCAGCATCCACTATGTGCAAA 57.930 42.857 0.00 0.00 41.19 3.68
114 115 3.011818 TCAGCATCCACTATGTGCAAAG 58.988 45.455 0.00 0.00 41.19 2.77
115 116 2.098607 CAGCATCCACTATGTGCAAAGG 59.901 50.000 0.00 0.00 41.19 3.11
116 117 2.094675 GCATCCACTATGTGCAAAGGT 58.905 47.619 0.00 0.00 38.68 3.50
117 118 2.159338 GCATCCACTATGTGCAAAGGTG 60.159 50.000 5.96 5.96 38.68 4.00
118 119 3.346315 CATCCACTATGTGCAAAGGTGA 58.654 45.455 12.62 2.54 31.34 4.02
119 120 3.719268 TCCACTATGTGCAAAGGTGAT 57.281 42.857 12.62 0.00 31.34 3.06
120 121 3.346315 TCCACTATGTGCAAAGGTGATG 58.654 45.455 12.62 0.41 31.34 3.07
121 122 3.008923 TCCACTATGTGCAAAGGTGATGA 59.991 43.478 12.62 2.37 31.34 2.92
122 123 3.758023 CCACTATGTGCAAAGGTGATGAA 59.242 43.478 12.62 0.00 31.34 2.57
123 124 4.142534 CCACTATGTGCAAAGGTGATGAAG 60.143 45.833 12.62 0.00 31.34 3.02
124 125 4.012374 ACTATGTGCAAAGGTGATGAAGG 58.988 43.478 0.00 0.00 0.00 3.46
125 126 0.961019 TGTGCAAAGGTGATGAAGGC 59.039 50.000 0.00 0.00 0.00 4.35
126 127 0.961019 GTGCAAAGGTGATGAAGGCA 59.039 50.000 0.00 0.00 0.00 4.75
127 128 1.340889 GTGCAAAGGTGATGAAGGCAA 59.659 47.619 0.00 0.00 0.00 4.52
128 129 2.037901 TGCAAAGGTGATGAAGGCAAA 58.962 42.857 0.00 0.00 0.00 3.68
129 130 2.433604 TGCAAAGGTGATGAAGGCAAAA 59.566 40.909 0.00 0.00 0.00 2.44
130 131 3.071312 TGCAAAGGTGATGAAGGCAAAAT 59.929 39.130 0.00 0.00 0.00 1.82
131 132 4.282957 TGCAAAGGTGATGAAGGCAAAATA 59.717 37.500 0.00 0.00 0.00 1.40
132 133 5.046448 TGCAAAGGTGATGAAGGCAAAATAT 60.046 36.000 0.00 0.00 0.00 1.28
133 134 5.876460 GCAAAGGTGATGAAGGCAAAATATT 59.124 36.000 0.00 0.00 0.00 1.28
134 135 7.041107 GCAAAGGTGATGAAGGCAAAATATTA 58.959 34.615 0.00 0.00 0.00 0.98
135 136 7.712205 GCAAAGGTGATGAAGGCAAAATATTAT 59.288 33.333 0.00 0.00 0.00 1.28
136 137 9.252962 CAAAGGTGATGAAGGCAAAATATTATC 57.747 33.333 0.00 0.00 0.00 1.75
137 138 7.530426 AGGTGATGAAGGCAAAATATTATCC 57.470 36.000 0.00 0.00 0.00 2.59
138 139 7.300658 AGGTGATGAAGGCAAAATATTATCCT 58.699 34.615 0.00 0.00 0.00 3.24
139 140 7.786464 AGGTGATGAAGGCAAAATATTATCCTT 59.214 33.333 12.79 12.79 39.63 3.36
140 141 7.869429 GGTGATGAAGGCAAAATATTATCCTTG 59.131 37.037 16.08 6.82 37.28 3.61
141 142 8.416329 GTGATGAAGGCAAAATATTATCCTTGT 58.584 33.333 16.08 8.15 37.28 3.16
142 143 8.415553 TGATGAAGGCAAAATATTATCCTTGTG 58.584 33.333 16.08 0.00 37.28 3.33
143 144 7.111247 TGAAGGCAAAATATTATCCTTGTGG 57.889 36.000 16.08 0.00 37.28 4.17
144 145 6.098124 TGAAGGCAAAATATTATCCTTGTGGG 59.902 38.462 16.08 0.00 37.28 4.61
145 146 4.344968 AGGCAAAATATTATCCTTGTGGGC 59.655 41.667 0.00 0.00 34.39 5.36
146 147 4.100808 GGCAAAATATTATCCTTGTGGGCA 59.899 41.667 0.00 0.00 34.39 5.36
147 148 5.221702 GGCAAAATATTATCCTTGTGGGCAT 60.222 40.000 0.00 0.00 34.39 4.40
148 149 5.697633 GCAAAATATTATCCTTGTGGGCATG 59.302 40.000 0.00 0.00 34.39 4.06
149 150 6.686126 GCAAAATATTATCCTTGTGGGCATGT 60.686 38.462 0.00 0.00 34.39 3.21
150 151 6.655078 AAATATTATCCTTGTGGGCATGTC 57.345 37.500 0.00 0.00 34.39 3.06
151 152 2.435372 TTATCCTTGTGGGCATGTCC 57.565 50.000 10.20 10.20 34.39 4.02
152 153 1.595311 TATCCTTGTGGGCATGTCCT 58.405 50.000 19.09 0.00 34.39 3.85
153 154 0.033796 ATCCTTGTGGGCATGTCCTG 60.034 55.000 19.09 5.14 34.39 3.86
154 155 1.679977 CCTTGTGGGCATGTCCTGG 60.680 63.158 19.09 10.56 34.39 4.45
155 156 1.379916 CTTGTGGGCATGTCCTGGA 59.620 57.895 19.09 1.85 34.39 3.86
156 157 0.033796 CTTGTGGGCATGTCCTGGAT 60.034 55.000 19.09 0.00 34.39 3.41
157 158 1.212688 CTTGTGGGCATGTCCTGGATA 59.787 52.381 19.09 0.00 34.39 2.59
158 159 1.521764 TGTGGGCATGTCCTGGATAT 58.478 50.000 19.09 0.00 34.39 1.63
159 160 1.143481 TGTGGGCATGTCCTGGATATG 59.857 52.381 24.33 24.33 34.91 1.78
160 161 0.773014 TGGGCATGTCCTGGATATGG 59.227 55.000 27.86 14.22 32.93 2.74
161 162 0.773644 GGGCATGTCCTGGATATGGT 59.226 55.000 27.86 0.00 32.93 3.55
162 163 1.271597 GGGCATGTCCTGGATATGGTC 60.272 57.143 27.86 15.85 32.93 4.02
163 164 1.701847 GGCATGTCCTGGATATGGTCT 59.298 52.381 27.86 0.00 32.93 3.85
164 165 2.289945 GGCATGTCCTGGATATGGTCTC 60.290 54.545 27.86 14.98 32.93 3.36
165 166 2.289945 GCATGTCCTGGATATGGTCTCC 60.290 54.545 27.86 12.20 32.93 3.71
166 167 2.103153 TGTCCTGGATATGGTCTCCC 57.897 55.000 0.00 0.00 31.32 4.30
167 168 1.353091 GTCCTGGATATGGTCTCCCC 58.647 60.000 0.00 0.00 31.32 4.81
168 169 0.178932 TCCTGGATATGGTCTCCCCG 60.179 60.000 0.00 0.00 35.15 5.73
169 170 1.674057 CTGGATATGGTCTCCCCGC 59.326 63.158 0.00 0.00 35.15 6.13
170 171 1.074850 TGGATATGGTCTCCCCGCA 60.075 57.895 0.00 0.00 35.15 5.69
171 172 0.692756 TGGATATGGTCTCCCCGCAA 60.693 55.000 0.00 0.00 35.15 4.85
172 173 0.035458 GGATATGGTCTCCCCGCAAG 59.965 60.000 0.00 0.00 35.15 4.01
173 174 0.603975 GATATGGTCTCCCCGCAAGC 60.604 60.000 0.00 0.00 35.15 4.01
174 175 2.383245 ATATGGTCTCCCCGCAAGCG 62.383 60.000 7.60 7.60 35.15 4.68
176 177 4.162690 GGTCTCCCCGCAAGCGAT 62.163 66.667 16.97 0.00 42.83 4.58
177 178 2.892425 GTCTCCCCGCAAGCGATG 60.892 66.667 16.97 6.44 42.83 3.84
178 179 3.390521 TCTCCCCGCAAGCGATGT 61.391 61.111 16.97 0.00 42.83 3.06
179 180 2.892425 CTCCCCGCAAGCGATGTC 60.892 66.667 16.97 0.00 42.83 3.06
180 181 4.812476 TCCCCGCAAGCGATGTCG 62.812 66.667 16.97 0.00 42.83 4.35
189 190 3.499737 GCGATGTCGGTGCCTTGG 61.500 66.667 4.44 0.00 40.23 3.61
190 191 3.499737 CGATGTCGGTGCCTTGGC 61.500 66.667 4.43 4.43 35.37 4.52
191 192 2.359850 GATGTCGGTGCCTTGGCA 60.360 61.111 10.65 10.65 0.00 4.92
192 193 1.971167 GATGTCGGTGCCTTGGCAA 60.971 57.895 16.55 0.00 0.00 4.52
193 194 1.523154 GATGTCGGTGCCTTGGCAAA 61.523 55.000 16.55 2.33 0.00 3.68
194 195 1.112315 ATGTCGGTGCCTTGGCAAAA 61.112 50.000 16.55 1.96 0.00 2.44
195 196 1.112315 TGTCGGTGCCTTGGCAAAAT 61.112 50.000 16.55 0.00 0.00 1.82
196 197 0.667184 GTCGGTGCCTTGGCAAAATG 60.667 55.000 16.55 6.62 0.00 2.32
197 198 1.112315 TCGGTGCCTTGGCAAAATGT 61.112 50.000 16.55 0.00 0.00 2.71
198 199 0.249826 CGGTGCCTTGGCAAAATGTT 60.250 50.000 16.55 0.00 0.00 2.71
199 200 1.000283 CGGTGCCTTGGCAAAATGTTA 60.000 47.619 16.55 0.00 0.00 2.41
200 201 2.353605 CGGTGCCTTGGCAAAATGTTAT 60.354 45.455 16.55 0.00 0.00 1.89
201 202 3.002102 GGTGCCTTGGCAAAATGTTATG 58.998 45.455 16.55 0.00 0.00 1.90
202 203 2.416202 GTGCCTTGGCAAAATGTTATGC 59.584 45.455 16.55 0.00 41.82 3.14
203 204 2.038164 TGCCTTGGCAAAATGTTATGCA 59.962 40.909 12.40 0.00 44.32 3.96
204 205 3.272581 GCCTTGGCAAAATGTTATGCAT 58.727 40.909 3.79 3.79 44.32 3.96
205 206 3.064271 GCCTTGGCAAAATGTTATGCATG 59.936 43.478 10.16 0.00 44.32 4.06
206 207 3.623960 CCTTGGCAAAATGTTATGCATGG 59.376 43.478 10.16 0.00 44.32 3.66
207 208 2.630158 TGGCAAAATGTTATGCATGGC 58.370 42.857 10.16 4.21 44.32 4.40
208 209 1.941975 GGCAAAATGTTATGCATGGCC 59.058 47.619 10.16 0.00 44.32 5.36
209 210 2.420408 GGCAAAATGTTATGCATGGCCT 60.420 45.455 10.16 0.00 44.32 5.19
210 211 3.272581 GCAAAATGTTATGCATGGCCTT 58.727 40.909 10.16 0.00 42.12 4.35
211 212 4.440880 GCAAAATGTTATGCATGGCCTTA 58.559 39.130 10.16 0.00 42.12 2.69
212 213 4.874966 GCAAAATGTTATGCATGGCCTTAA 59.125 37.500 10.16 0.00 42.12 1.85
213 214 5.006941 GCAAAATGTTATGCATGGCCTTAAG 59.993 40.000 10.16 0.00 42.12 1.85
214 215 4.326504 AATGTTATGCATGGCCTTAAGC 57.673 40.909 10.16 3.08 37.96 3.09
225 226 2.654749 GCCTTAAGCCGCTTCAAAAT 57.345 45.000 9.42 0.00 34.35 1.82
226 227 2.262211 GCCTTAAGCCGCTTCAAAATG 58.738 47.619 9.42 0.00 34.35 2.32
227 228 2.879826 CCTTAAGCCGCTTCAAAATGG 58.120 47.619 9.42 0.11 0.00 3.16
228 229 2.231235 CCTTAAGCCGCTTCAAAATGGT 59.769 45.455 9.42 0.00 0.00 3.55
229 230 3.244976 CTTAAGCCGCTTCAAAATGGTG 58.755 45.455 9.42 0.00 0.00 4.17
230 231 1.039856 AAGCCGCTTCAAAATGGTGT 58.960 45.000 0.00 0.00 0.00 4.16
231 232 0.598065 AGCCGCTTCAAAATGGTGTC 59.402 50.000 0.00 0.00 0.00 3.67
232 233 0.313672 GCCGCTTCAAAATGGTGTCA 59.686 50.000 0.00 0.00 0.00 3.58
233 234 1.067635 GCCGCTTCAAAATGGTGTCAT 60.068 47.619 0.00 0.00 34.56 3.06
234 235 2.610232 GCCGCTTCAAAATGGTGTCATT 60.610 45.455 0.00 0.00 44.77 2.57
246 247 6.907206 AATGGTGTCATTTGAAGTGTTTTG 57.093 33.333 0.00 0.00 40.42 2.44
247 248 5.651387 TGGTGTCATTTGAAGTGTTTTGA 57.349 34.783 0.00 0.00 0.00 2.69
248 249 6.219417 TGGTGTCATTTGAAGTGTTTTGAT 57.781 33.333 0.00 0.00 0.00 2.57
249 250 6.041511 TGGTGTCATTTGAAGTGTTTTGATG 58.958 36.000 0.00 0.00 0.00 3.07
250 251 5.463061 GGTGTCATTTGAAGTGTTTTGATGG 59.537 40.000 0.00 0.00 0.00 3.51
251 252 6.042143 GTGTCATTTGAAGTGTTTTGATGGT 58.958 36.000 0.00 0.00 0.00 3.55
252 253 6.019640 GTGTCATTTGAAGTGTTTTGATGGTG 60.020 38.462 0.00 0.00 0.00 4.17
253 254 5.049167 TCATTTGAAGTGTTTTGATGGTGC 58.951 37.500 0.00 0.00 0.00 5.01
254 255 4.734398 TTTGAAGTGTTTTGATGGTGCT 57.266 36.364 0.00 0.00 0.00 4.40
255 256 5.843673 TTTGAAGTGTTTTGATGGTGCTA 57.156 34.783 0.00 0.00 0.00 3.49
256 257 5.437289 TTGAAGTGTTTTGATGGTGCTAG 57.563 39.130 0.00 0.00 0.00 3.42
257 258 4.460263 TGAAGTGTTTTGATGGTGCTAGT 58.540 39.130 0.00 0.00 0.00 2.57
258 259 5.616270 TGAAGTGTTTTGATGGTGCTAGTA 58.384 37.500 0.00 0.00 0.00 1.82
259 260 6.237901 TGAAGTGTTTTGATGGTGCTAGTAT 58.762 36.000 0.00 0.00 0.00 2.12
260 261 7.390823 TGAAGTGTTTTGATGGTGCTAGTATA 58.609 34.615 0.00 0.00 0.00 1.47
261 262 7.880713 TGAAGTGTTTTGATGGTGCTAGTATAA 59.119 33.333 0.00 0.00 0.00 0.98
262 263 8.630054 AAGTGTTTTGATGGTGCTAGTATAAA 57.370 30.769 0.00 0.00 0.00 1.40
263 264 8.807948 AGTGTTTTGATGGTGCTAGTATAAAT 57.192 30.769 0.00 0.00 0.00 1.40
264 265 9.899661 AGTGTTTTGATGGTGCTAGTATAAATA 57.100 29.630 0.00 0.00 0.00 1.40
271 272 9.725019 TGATGGTGCTAGTATAAATATTTGGAG 57.275 33.333 11.05 2.45 0.00 3.86
272 273 9.944376 GATGGTGCTAGTATAAATATTTGGAGA 57.056 33.333 11.05 0.00 0.00 3.71
273 274 9.950496 ATGGTGCTAGTATAAATATTTGGAGAG 57.050 33.333 11.05 3.40 0.00 3.20
274 275 8.375506 TGGTGCTAGTATAAATATTTGGAGAGG 58.624 37.037 11.05 0.00 0.00 3.69
275 276 8.376270 GGTGCTAGTATAAATATTTGGAGAGGT 58.624 37.037 11.05 0.00 0.00 3.85
284 285 9.847224 ATAAATATTTGGAGAGGTAATTGTCGT 57.153 29.630 11.05 0.00 0.00 4.34
285 286 7.787725 AATATTTGGAGAGGTAATTGTCGTC 57.212 36.000 0.00 0.00 0.00 4.20
286 287 3.604875 TTGGAGAGGTAATTGTCGTCC 57.395 47.619 0.00 0.00 0.00 4.79
287 288 1.829222 TGGAGAGGTAATTGTCGTCCC 59.171 52.381 0.00 0.00 0.00 4.46
288 289 1.829222 GGAGAGGTAATTGTCGTCCCA 59.171 52.381 0.00 0.00 0.00 4.37
289 290 2.235402 GGAGAGGTAATTGTCGTCCCAA 59.765 50.000 0.00 0.00 0.00 4.12
290 291 3.307199 GGAGAGGTAATTGTCGTCCCAAA 60.307 47.826 0.00 0.00 0.00 3.28
291 292 3.933332 GAGAGGTAATTGTCGTCCCAAAG 59.067 47.826 0.00 0.00 0.00 2.77
292 293 3.581332 AGAGGTAATTGTCGTCCCAAAGA 59.419 43.478 0.00 0.00 0.00 2.52
293 294 4.225267 AGAGGTAATTGTCGTCCCAAAGAT 59.775 41.667 0.00 0.00 0.00 2.40
294 295 4.918588 AGGTAATTGTCGTCCCAAAGATT 58.081 39.130 0.00 0.00 0.00 2.40
295 296 6.057321 AGGTAATTGTCGTCCCAAAGATTA 57.943 37.500 0.00 0.00 0.00 1.75
296 297 6.659824 AGGTAATTGTCGTCCCAAAGATTAT 58.340 36.000 0.00 0.00 0.00 1.28
297 298 7.798071 AGGTAATTGTCGTCCCAAAGATTATA 58.202 34.615 0.00 0.00 0.00 0.98
298 299 8.437575 AGGTAATTGTCGTCCCAAAGATTATAT 58.562 33.333 0.00 0.00 0.00 0.86
299 300 8.718734 GGTAATTGTCGTCCCAAAGATTATATC 58.281 37.037 0.00 0.00 0.00 1.63
300 301 7.745620 AATTGTCGTCCCAAAGATTATATCC 57.254 36.000 0.00 0.00 0.00 2.59
301 302 5.880164 TGTCGTCCCAAAGATTATATCCA 57.120 39.130 0.00 0.00 0.00 3.41
302 303 6.241882 TGTCGTCCCAAAGATTATATCCAA 57.758 37.500 0.00 0.00 0.00 3.53
303 304 6.654959 TGTCGTCCCAAAGATTATATCCAAA 58.345 36.000 0.00 0.00 0.00 3.28
304 305 7.113437 TGTCGTCCCAAAGATTATATCCAAAA 58.887 34.615 0.00 0.00 0.00 2.44
305 306 7.066525 TGTCGTCCCAAAGATTATATCCAAAAC 59.933 37.037 0.00 0.00 0.00 2.43
306 307 7.066525 GTCGTCCCAAAGATTATATCCAAAACA 59.933 37.037 0.00 0.00 0.00 2.83
307 308 7.612244 TCGTCCCAAAGATTATATCCAAAACAA 59.388 33.333 0.00 0.00 0.00 2.83
308 309 8.247562 CGTCCCAAAGATTATATCCAAAACAAA 58.752 33.333 0.00 0.00 0.00 2.83
334 335 6.970484 TCTGTTTTGAAGAATTGAACTAGGC 58.030 36.000 0.00 0.00 0.00 3.93
335 336 6.772716 TCTGTTTTGAAGAATTGAACTAGGCT 59.227 34.615 0.00 0.00 0.00 4.58
336 337 7.285401 TCTGTTTTGAAGAATTGAACTAGGCTT 59.715 33.333 0.00 0.00 0.00 4.35
337 338 8.458573 TGTTTTGAAGAATTGAACTAGGCTTA 57.541 30.769 0.00 0.00 0.00 3.09
338 339 8.908903 TGTTTTGAAGAATTGAACTAGGCTTAA 58.091 29.630 0.00 0.00 0.00 1.85
339 340 9.744468 GTTTTGAAGAATTGAACTAGGCTTAAA 57.256 29.630 0.00 0.00 0.00 1.52
341 342 9.912634 TTTGAAGAATTGAACTAGGCTTAAATG 57.087 29.630 0.00 0.00 0.00 2.32
342 343 8.055279 TGAAGAATTGAACTAGGCTTAAATGG 57.945 34.615 0.00 0.00 0.00 3.16
343 344 7.122650 TGAAGAATTGAACTAGGCTTAAATGGG 59.877 37.037 0.00 0.00 0.00 4.00
344 345 6.494059 AGAATTGAACTAGGCTTAAATGGGT 58.506 36.000 0.00 0.00 0.00 4.51
345 346 6.954102 AGAATTGAACTAGGCTTAAATGGGTT 59.046 34.615 0.00 0.00 0.00 4.11
346 347 7.454694 AGAATTGAACTAGGCTTAAATGGGTTT 59.545 33.333 0.00 0.00 0.00 3.27
347 348 5.975693 TGAACTAGGCTTAAATGGGTTTG 57.024 39.130 0.00 0.00 0.00 2.93
348 349 5.390387 TGAACTAGGCTTAAATGGGTTTGT 58.610 37.500 0.00 0.00 0.00 2.83
349 350 5.242838 TGAACTAGGCTTAAATGGGTTTGTG 59.757 40.000 0.00 0.00 0.00 3.33
350 351 4.993028 ACTAGGCTTAAATGGGTTTGTGA 58.007 39.130 0.00 0.00 0.00 3.58
351 352 5.010282 ACTAGGCTTAAATGGGTTTGTGAG 58.990 41.667 0.00 0.00 0.00 3.51
352 353 3.844640 AGGCTTAAATGGGTTTGTGAGT 58.155 40.909 0.00 0.00 0.00 3.41
353 354 4.223144 AGGCTTAAATGGGTTTGTGAGTT 58.777 39.130 0.00 0.00 0.00 3.01
354 355 5.390387 AGGCTTAAATGGGTTTGTGAGTTA 58.610 37.500 0.00 0.00 0.00 2.24
355 356 6.016555 AGGCTTAAATGGGTTTGTGAGTTAT 58.983 36.000 0.00 0.00 0.00 1.89
356 357 6.496911 AGGCTTAAATGGGTTTGTGAGTTATT 59.503 34.615 0.00 0.00 0.00 1.40
357 358 6.811665 GGCTTAAATGGGTTTGTGAGTTATTC 59.188 38.462 0.00 0.00 0.00 1.75
358 359 6.526674 GCTTAAATGGGTTTGTGAGTTATTCG 59.473 38.462 0.00 0.00 0.00 3.34
359 360 7.513371 TTAAATGGGTTTGTGAGTTATTCGT 57.487 32.000 0.00 0.00 0.00 3.85
360 361 5.371115 AATGGGTTTGTGAGTTATTCGTG 57.629 39.130 0.00 0.00 0.00 4.35
361 362 4.074627 TGGGTTTGTGAGTTATTCGTGA 57.925 40.909 0.00 0.00 0.00 4.35
362 363 4.062293 TGGGTTTGTGAGTTATTCGTGAG 58.938 43.478 0.00 0.00 0.00 3.51
363 364 4.202274 TGGGTTTGTGAGTTATTCGTGAGA 60.202 41.667 0.00 0.00 39.20 3.27
364 365 4.389077 GGGTTTGTGAGTTATTCGTGAGAG 59.611 45.833 0.00 0.00 43.69 3.20
365 366 4.389077 GGTTTGTGAGTTATTCGTGAGAGG 59.611 45.833 0.00 0.00 43.69 3.69
366 367 3.868757 TGTGAGTTATTCGTGAGAGGG 57.131 47.619 0.00 0.00 43.69 4.30
367 368 3.162666 TGTGAGTTATTCGTGAGAGGGT 58.837 45.455 0.00 0.00 43.69 4.34
368 369 3.192844 TGTGAGTTATTCGTGAGAGGGTC 59.807 47.826 0.00 0.00 43.69 4.46
369 370 3.444388 GTGAGTTATTCGTGAGAGGGTCT 59.556 47.826 0.00 0.00 43.69 3.85
370 371 4.082136 GTGAGTTATTCGTGAGAGGGTCTT 60.082 45.833 0.00 0.00 43.69 3.01
371 372 4.527038 TGAGTTATTCGTGAGAGGGTCTTT 59.473 41.667 0.00 0.00 43.69 2.52
372 373 5.011738 TGAGTTATTCGTGAGAGGGTCTTTT 59.988 40.000 0.00 0.00 43.69 2.27
373 374 5.866207 AGTTATTCGTGAGAGGGTCTTTTT 58.134 37.500 0.00 0.00 43.69 1.94
391 392 3.926821 TTTTTGGAAATGGAGGCGTAC 57.073 42.857 0.00 0.00 0.00 3.67
392 393 1.828979 TTTGGAAATGGAGGCGTACC 58.171 50.000 0.00 0.00 0.00 3.34
393 394 0.034863 TTGGAAATGGAGGCGTACCC 60.035 55.000 0.00 0.00 36.11 3.69
394 395 1.153025 GGAAATGGAGGCGTACCCC 60.153 63.158 0.00 0.00 36.11 4.95
395 396 1.153025 GAAATGGAGGCGTACCCCC 60.153 63.158 0.00 0.00 36.11 5.40
396 397 2.935627 GAAATGGAGGCGTACCCCCG 62.936 65.000 0.00 0.00 36.11 5.73
406 407 4.815973 TACCCCCGGCCTCTGCAT 62.816 66.667 0.00 0.00 40.13 3.96
409 410 3.882326 CCCCGGCCTCTGCATCAT 61.882 66.667 0.00 0.00 40.13 2.45
410 411 2.593725 CCCGGCCTCTGCATCATG 60.594 66.667 0.00 0.00 40.13 3.07
411 412 2.507452 CCGGCCTCTGCATCATGA 59.493 61.111 0.00 0.00 40.13 3.07
412 413 1.072678 CCGGCCTCTGCATCATGAT 59.927 57.895 1.18 1.18 40.13 2.45
413 414 1.235281 CCGGCCTCTGCATCATGATG 61.235 60.000 28.04 28.04 41.60 3.07
414 415 0.250166 CGGCCTCTGCATCATGATGA 60.250 55.000 34.65 19.93 41.20 2.92
415 416 1.610886 CGGCCTCTGCATCATGATGAT 60.611 52.381 34.65 1.25 41.20 2.45
424 425 2.599659 CATCATGATGATGCATGCAGC 58.400 47.619 28.44 28.44 46.37 5.25
425 426 0.958822 TCATGATGATGCATGCAGCC 59.041 50.000 31.30 22.02 44.08 4.85
426 427 0.673437 CATGATGATGCATGCAGCCA 59.327 50.000 31.30 26.44 44.83 4.75
427 428 1.273327 CATGATGATGCATGCAGCCAT 59.727 47.619 31.30 29.37 44.83 4.40
428 429 0.958822 TGATGATGCATGCAGCCATC 59.041 50.000 35.18 35.18 44.83 3.51
429 430 1.248486 GATGATGCATGCAGCCATCT 58.752 50.000 34.86 20.95 44.83 2.90
430 431 1.613925 GATGATGCATGCAGCCATCTT 59.386 47.619 34.86 23.70 44.83 2.40
431 432 2.351706 TGATGCATGCAGCCATCTTA 57.648 45.000 31.30 10.43 44.83 2.10
432 433 2.871453 TGATGCATGCAGCCATCTTAT 58.129 42.857 31.30 9.02 44.83 1.73
433 434 3.227614 TGATGCATGCAGCCATCTTATT 58.772 40.909 31.30 8.21 44.83 1.40
434 435 4.400120 TGATGCATGCAGCCATCTTATTA 58.600 39.130 31.30 8.11 44.83 0.98
435 436 4.828387 TGATGCATGCAGCCATCTTATTAA 59.172 37.500 31.30 7.33 44.83 1.40
436 437 5.302313 TGATGCATGCAGCCATCTTATTAAA 59.698 36.000 31.30 6.79 44.83 1.52
437 438 5.595257 TGCATGCAGCCATCTTATTAAAA 57.405 34.783 18.46 0.00 44.83 1.52
438 439 5.975282 TGCATGCAGCCATCTTATTAAAAA 58.025 33.333 18.46 0.00 44.83 1.94
439 440 6.044046 TGCATGCAGCCATCTTATTAAAAAG 58.956 36.000 18.46 0.00 44.83 2.27
440 441 6.044682 GCATGCAGCCATCTTATTAAAAAGT 58.955 36.000 14.21 0.00 37.23 2.66
441 442 6.199719 GCATGCAGCCATCTTATTAAAAAGTC 59.800 38.462 14.21 0.00 37.23 3.01
442 443 7.486647 CATGCAGCCATCTTATTAAAAAGTCT 58.513 34.615 0.00 0.00 0.00 3.24
443 444 7.088589 TGCAGCCATCTTATTAAAAAGTCTC 57.911 36.000 0.00 0.00 0.00 3.36
444 445 6.658816 TGCAGCCATCTTATTAAAAAGTCTCA 59.341 34.615 0.00 0.00 0.00 3.27
445 446 7.176515 TGCAGCCATCTTATTAAAAAGTCTCAA 59.823 33.333 0.00 0.00 0.00 3.02
446 447 8.028938 GCAGCCATCTTATTAAAAAGTCTCAAA 58.971 33.333 0.00 0.00 0.00 2.69
447 448 9.565213 CAGCCATCTTATTAAAAAGTCTCAAAG 57.435 33.333 0.00 0.00 0.00 2.77
448 449 9.301897 AGCCATCTTATTAAAAAGTCTCAAAGT 57.698 29.630 0.00 0.00 0.00 2.66
457 458 9.736023 ATTAAAAAGTCTCAAAGTAGCACAAAG 57.264 29.630 0.00 0.00 0.00 2.77
458 459 6.759497 AAAAGTCTCAAAGTAGCACAAAGT 57.241 33.333 0.00 0.00 0.00 2.66
459 460 5.993106 AAGTCTCAAAGTAGCACAAAGTC 57.007 39.130 0.00 0.00 0.00 3.01
460 461 5.023533 AGTCTCAAAGTAGCACAAAGTCA 57.976 39.130 0.00 0.00 0.00 3.41
461 462 5.615289 AGTCTCAAAGTAGCACAAAGTCAT 58.385 37.500 0.00 0.00 0.00 3.06
462 463 6.759272 AGTCTCAAAGTAGCACAAAGTCATA 58.241 36.000 0.00 0.00 0.00 2.15
463 464 7.217200 AGTCTCAAAGTAGCACAAAGTCATAA 58.783 34.615 0.00 0.00 0.00 1.90
464 465 7.715249 AGTCTCAAAGTAGCACAAAGTCATAAA 59.285 33.333 0.00 0.00 0.00 1.40
465 466 8.012241 GTCTCAAAGTAGCACAAAGTCATAAAG 58.988 37.037 0.00 0.00 0.00 1.85
466 467 7.173218 TCTCAAAGTAGCACAAAGTCATAAAGG 59.827 37.037 0.00 0.00 0.00 3.11
467 468 6.770785 TCAAAGTAGCACAAAGTCATAAAGGT 59.229 34.615 0.00 0.00 0.00 3.50
468 469 7.934665 TCAAAGTAGCACAAAGTCATAAAGGTA 59.065 33.333 0.00 0.00 0.00 3.08
469 470 8.730680 CAAAGTAGCACAAAGTCATAAAGGTAT 58.269 33.333 0.00 0.00 0.00 2.73
470 471 8.863872 AAGTAGCACAAAGTCATAAAGGTATT 57.136 30.769 0.00 0.00 0.00 1.89
471 472 9.953565 AAGTAGCACAAAGTCATAAAGGTATTA 57.046 29.630 0.00 0.00 0.00 0.98
472 473 9.379791 AGTAGCACAAAGTCATAAAGGTATTAC 57.620 33.333 0.00 0.00 0.00 1.89
473 474 9.158233 GTAGCACAAAGTCATAAAGGTATTACA 57.842 33.333 0.00 0.00 0.00 2.41
474 475 8.268850 AGCACAAAGTCATAAAGGTATTACAG 57.731 34.615 0.00 0.00 0.00 2.74
475 476 6.967199 GCACAAAGTCATAAAGGTATTACAGC 59.033 38.462 0.00 0.00 0.00 4.40
476 477 7.148239 GCACAAAGTCATAAAGGTATTACAGCT 60.148 37.037 0.00 0.00 36.21 4.24
477 478 8.391106 CACAAAGTCATAAAGGTATTACAGCTC 58.609 37.037 0.00 0.00 32.46 4.09
478 479 7.277981 ACAAAGTCATAAAGGTATTACAGCTCG 59.722 37.037 0.00 0.00 32.46 5.03
479 480 5.290386 AGTCATAAAGGTATTACAGCTCGC 58.710 41.667 0.00 0.00 32.46 5.03
480 481 5.047847 GTCATAAAGGTATTACAGCTCGCA 58.952 41.667 0.00 0.00 32.46 5.10
481 482 5.522460 GTCATAAAGGTATTACAGCTCGCAA 59.478 40.000 0.00 0.00 32.46 4.85
482 483 5.753438 TCATAAAGGTATTACAGCTCGCAAG 59.247 40.000 0.00 0.00 32.46 4.01
508 509 7.905126 CGGAGCAAAACAAAGAAAATAAAAGT 58.095 30.769 0.00 0.00 0.00 2.66
509 510 7.845622 CGGAGCAAAACAAAGAAAATAAAAGTG 59.154 33.333 0.00 0.00 0.00 3.16
510 511 8.664798 GGAGCAAAACAAAGAAAATAAAAGTGT 58.335 29.630 0.00 0.00 0.00 3.55
517 518 9.476202 AACAAAGAAAATAAAAGTGTATGCTCC 57.524 29.630 0.00 0.00 0.00 4.70
518 519 8.637986 ACAAAGAAAATAAAAGTGTATGCTCCA 58.362 29.630 0.00 0.00 0.00 3.86
519 520 9.474920 CAAAGAAAATAAAAGTGTATGCTCCAA 57.525 29.630 0.00 0.00 0.00 3.53
522 523 9.476202 AGAAAATAAAAGTGTATGCTCCAAAAC 57.524 29.630 0.00 0.00 0.00 2.43
523 524 9.255304 GAAAATAAAAGTGTATGCTCCAAAACA 57.745 29.630 0.00 0.00 0.00 2.83
524 525 8.587952 AAATAAAAGTGTATGCTCCAAAACAC 57.412 30.769 0.00 0.00 41.97 3.32
525 526 5.590530 AAAAGTGTATGCTCCAAAACACA 57.409 34.783 13.25 0.00 43.65 3.72
526 527 5.590530 AAAGTGTATGCTCCAAAACACAA 57.409 34.783 13.25 0.00 43.65 3.33
527 528 4.568152 AGTGTATGCTCCAAAACACAAC 57.432 40.909 13.25 0.00 43.65 3.32
528 529 3.317993 AGTGTATGCTCCAAAACACAACC 59.682 43.478 13.25 0.00 43.65 3.77
529 530 2.292016 TGTATGCTCCAAAACACAACCG 59.708 45.455 0.00 0.00 0.00 4.44
530 531 0.673437 ATGCTCCAAAACACAACCGG 59.327 50.000 0.00 0.00 0.00 5.28
531 532 0.681564 TGCTCCAAAACACAACCGGT 60.682 50.000 0.00 0.00 0.00 5.28
532 533 1.310904 GCTCCAAAACACAACCGGTA 58.689 50.000 8.00 0.00 0.00 4.02
533 534 1.677052 GCTCCAAAACACAACCGGTAA 59.323 47.619 8.00 0.00 0.00 2.85
534 535 2.287368 GCTCCAAAACACAACCGGTAAG 60.287 50.000 8.00 6.45 0.00 2.34
536 537 1.269361 CCAAAACACAACCGGTAAGGC 60.269 52.381 8.00 0.00 46.52 4.35
537 538 1.405821 CAAAACACAACCGGTAAGGCA 59.594 47.619 8.00 0.00 46.52 4.75
538 539 1.765230 AAACACAACCGGTAAGGCAA 58.235 45.000 8.00 0.00 46.52 4.52
539 540 1.989706 AACACAACCGGTAAGGCAAT 58.010 45.000 8.00 0.00 46.52 3.56
540 541 2.863132 ACACAACCGGTAAGGCAATA 57.137 45.000 8.00 0.00 46.52 1.90
541 542 2.706890 ACACAACCGGTAAGGCAATAG 58.293 47.619 8.00 0.00 46.52 1.73
542 543 2.303600 ACACAACCGGTAAGGCAATAGA 59.696 45.455 8.00 0.00 46.52 1.98
543 544 3.244630 ACACAACCGGTAAGGCAATAGAA 60.245 43.478 8.00 0.00 46.52 2.10
544 545 3.754323 CACAACCGGTAAGGCAATAGAAA 59.246 43.478 8.00 0.00 46.52 2.52
545 546 4.007659 ACAACCGGTAAGGCAATAGAAAG 58.992 43.478 8.00 0.00 46.52 2.62
546 547 3.277142 ACCGGTAAGGCAATAGAAAGG 57.723 47.619 4.49 0.00 46.52 3.11
547 548 2.841881 ACCGGTAAGGCAATAGAAAGGA 59.158 45.455 4.49 0.00 46.52 3.36
548 549 3.458487 ACCGGTAAGGCAATAGAAAGGAT 59.542 43.478 4.49 0.00 46.52 3.24
549 550 4.657039 ACCGGTAAGGCAATAGAAAGGATA 59.343 41.667 4.49 0.00 46.52 2.59
550 551 5.131475 ACCGGTAAGGCAATAGAAAGGATAA 59.869 40.000 4.49 0.00 46.52 1.75
551 552 5.701290 CCGGTAAGGCAATAGAAAGGATAAG 59.299 44.000 0.00 0.00 0.00 1.73
552 553 5.179555 CGGTAAGGCAATAGAAAGGATAAGC 59.820 44.000 0.00 0.00 0.00 3.09
553 554 6.299922 GGTAAGGCAATAGAAAGGATAAGCT 58.700 40.000 0.00 0.00 0.00 3.74
554 555 6.428465 GGTAAGGCAATAGAAAGGATAAGCTC 59.572 42.308 0.00 0.00 0.00 4.09
555 556 4.979335 AGGCAATAGAAAGGATAAGCTCC 58.021 43.478 0.00 0.00 45.33 4.70
556 557 4.075682 GGCAATAGAAAGGATAAGCTCCC 58.924 47.826 0.00 0.00 46.27 4.30
557 558 4.202514 GGCAATAGAAAGGATAAGCTCCCT 60.203 45.833 0.00 0.00 46.27 4.20
558 559 5.013183 GGCAATAGAAAGGATAAGCTCCCTA 59.987 44.000 3.11 0.00 46.27 3.53
559 560 6.169800 GCAATAGAAAGGATAAGCTCCCTAG 58.830 44.000 3.11 0.00 46.27 3.02
560 561 6.014156 GCAATAGAAAGGATAAGCTCCCTAGA 60.014 42.308 3.11 0.00 46.27 2.43
561 562 7.382898 CAATAGAAAGGATAAGCTCCCTAGAC 58.617 42.308 3.11 0.00 46.27 2.59
562 563 5.150944 AGAAAGGATAAGCTCCCTAGACT 57.849 43.478 3.11 1.83 46.27 3.24
563 564 5.144832 AGAAAGGATAAGCTCCCTAGACTC 58.855 45.833 3.11 0.21 46.27 3.36
564 565 3.536075 AGGATAAGCTCCCTAGACTCC 57.464 52.381 0.00 0.00 46.27 3.85
565 566 3.068237 AGGATAAGCTCCCTAGACTCCT 58.932 50.000 0.00 0.00 46.27 3.69
566 567 4.252853 AGGATAAGCTCCCTAGACTCCTA 58.747 47.826 0.00 0.00 46.27 2.94
567 568 4.861454 AGGATAAGCTCCCTAGACTCCTAT 59.139 45.833 0.00 0.00 46.27 2.57
611 612 1.404181 CCTCAGTGGTGTCCATGTACG 60.404 57.143 0.00 0.00 35.28 3.67
666 667 3.849951 CCCCTAGTCCGTGCGCAT 61.850 66.667 15.91 0.00 0.00 4.73
850 851 2.295253 GCTATATAAGCGGGCGACAT 57.705 50.000 0.00 0.00 42.53 3.06
853 854 0.885879 ATATAAGCGGGCGACATCGA 59.114 50.000 5.26 0.00 43.02 3.59
935 936 1.051812 GAAGCTAGCTATGGAGGGCA 58.948 55.000 19.70 0.00 0.00 5.36
987 988 1.908483 GGCGTTGAGATCCCCTTCT 59.092 57.895 0.00 0.00 0.00 2.85
1084 1085 2.421877 CTTCGTCTGTCCGTGGTGCT 62.422 60.000 0.00 0.00 0.00 4.40
1264 1265 3.565307 ACATGCTTCTTTCTTTGGGTCA 58.435 40.909 0.00 0.00 0.00 4.02
1270 1271 4.502087 GCTTCTTTCTTTGGGTCAATGCTT 60.502 41.667 0.00 0.00 0.00 3.91
1338 1341 2.435410 CATGCTGCCACGAGCTGA 60.435 61.111 11.83 0.60 42.76 4.26
1482 1486 7.726033 ACCAATACCCATTTGCAAATACTTA 57.274 32.000 23.69 14.46 0.00 2.24
1503 1507 3.011566 TGGGCATTTGTAGGTATGGTG 57.988 47.619 0.00 0.00 0.00 4.17
1510 1514 4.415881 TTTGTAGGTATGGTGATCGCAT 57.584 40.909 8.82 2.83 0.00 4.73
1697 1702 8.499403 AGAGAAGAAATTAGGAATTCGGAAAG 57.501 34.615 0.00 0.00 0.00 2.62
1772 1779 2.105766 GCTCTTGGGCCAAATTCAGAT 58.894 47.619 21.28 0.00 0.00 2.90
1810 1817 4.286032 CAGGCTATACTAATGGGCCAACTA 59.714 45.833 11.89 4.22 44.60 2.24
1981 1988 8.477984 TTTTGGAGCTGTTAATTAATGCAATC 57.522 30.769 20.55 13.47 0.00 2.67
2224 2234 0.179092 GCGTTGGTAACCGCTAGGAT 60.179 55.000 0.00 0.00 46.08 3.24
2331 2343 1.350319 GTTTGCACACGCGTGAGAA 59.650 52.632 42.94 29.51 46.80 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.014564 CCACTTCGCCTTTCGGTCTC 61.015 60.000 0.00 0.00 39.05 3.36
2 3 2.033194 CCCACTTCGCCTTTCGGTC 61.033 63.158 0.00 0.00 39.05 4.79
4 5 0.107848 ATACCCACTTCGCCTTTCGG 60.108 55.000 0.00 0.00 39.05 4.30
6 7 1.379527 CCATACCCACTTCGCCTTTC 58.620 55.000 0.00 0.00 0.00 2.62
7 8 0.034477 CCCATACCCACTTCGCCTTT 60.034 55.000 0.00 0.00 0.00 3.11
8 9 0.912487 TCCCATACCCACTTCGCCTT 60.912 55.000 0.00 0.00 0.00 4.35
9 10 0.694444 ATCCCATACCCACTTCGCCT 60.694 55.000 0.00 0.00 0.00 5.52
10 11 0.182775 AATCCCATACCCACTTCGCC 59.817 55.000 0.00 0.00 0.00 5.54
11 12 1.947456 GAAATCCCATACCCACTTCGC 59.053 52.381 0.00 0.00 0.00 4.70
12 13 3.275617 TGAAATCCCATACCCACTTCG 57.724 47.619 0.00 0.00 0.00 3.79
13 14 4.792068 TCATGAAATCCCATACCCACTTC 58.208 43.478 0.00 0.00 0.00 3.01
14 15 4.879295 TCATGAAATCCCATACCCACTT 57.121 40.909 0.00 0.00 0.00 3.16
15 16 4.666907 AGATCATGAAATCCCATACCCACT 59.333 41.667 0.00 0.00 0.00 4.00
16 17 4.990526 AGATCATGAAATCCCATACCCAC 58.009 43.478 0.00 0.00 0.00 4.61
17 18 6.562223 TCTTAGATCATGAAATCCCATACCCA 59.438 38.462 0.00 0.00 0.00 4.51
18 19 7.020827 TCTTAGATCATGAAATCCCATACCC 57.979 40.000 0.00 0.00 0.00 3.69
50 51 2.357050 TGGTTAGCCATAAGCACATGCT 60.357 45.455 0.00 0.00 46.98 3.79
51 52 2.426738 TTGGTTAGCCATAAGCACATGC 59.573 45.455 0.00 0.00 46.23 4.06
52 53 3.696051 ACTTGGTTAGCCATAAGCACATG 59.304 43.478 0.00 0.00 46.23 3.21
53 54 3.968265 ACTTGGTTAGCCATAAGCACAT 58.032 40.909 0.00 0.00 46.23 3.21
54 55 3.433306 ACTTGGTTAGCCATAAGCACA 57.567 42.857 0.00 0.00 46.23 4.57
55 56 4.022329 ACAAACTTGGTTAGCCATAAGCAC 60.022 41.667 0.00 0.00 46.23 4.40
56 57 4.148838 ACAAACTTGGTTAGCCATAAGCA 58.851 39.130 0.00 0.00 45.56 3.91
57 58 4.783764 ACAAACTTGGTTAGCCATAAGC 57.216 40.909 0.00 0.00 45.56 3.09
58 59 5.469479 CCAACAAACTTGGTTAGCCATAAG 58.531 41.667 0.00 0.00 45.56 1.73
59 60 5.461032 CCAACAAACTTGGTTAGCCATAA 57.539 39.130 0.00 0.00 45.56 1.90
69 70 7.928706 TGATAAACCAATAACCAACAAACTTGG 59.071 33.333 0.00 0.00 44.91 3.61
70 71 8.879342 TGATAAACCAATAACCAACAAACTTG 57.121 30.769 0.00 0.00 0.00 3.16
71 72 7.655732 GCTGATAAACCAATAACCAACAAACTT 59.344 33.333 0.00 0.00 0.00 2.66
72 73 7.151976 GCTGATAAACCAATAACCAACAAACT 58.848 34.615 0.00 0.00 0.00 2.66
73 74 6.926272 TGCTGATAAACCAATAACCAACAAAC 59.074 34.615 0.00 0.00 0.00 2.93
74 75 7.055667 TGCTGATAAACCAATAACCAACAAA 57.944 32.000 0.00 0.00 0.00 2.83
75 76 6.656632 TGCTGATAAACCAATAACCAACAA 57.343 33.333 0.00 0.00 0.00 2.83
76 77 6.127479 GGATGCTGATAAACCAATAACCAACA 60.127 38.462 0.00 0.00 0.00 3.33
77 78 6.127479 TGGATGCTGATAAACCAATAACCAAC 60.127 38.462 0.00 0.00 0.00 3.77
78 79 5.954752 TGGATGCTGATAAACCAATAACCAA 59.045 36.000 0.00 0.00 0.00 3.67
79 80 5.359576 GTGGATGCTGATAAACCAATAACCA 59.640 40.000 0.00 0.00 32.32 3.67
80 81 5.594317 AGTGGATGCTGATAAACCAATAACC 59.406 40.000 0.00 0.00 32.32 2.85
81 82 6.699575 AGTGGATGCTGATAAACCAATAAC 57.300 37.500 0.00 0.00 32.32 1.89
82 83 7.998383 ACATAGTGGATGCTGATAAACCAATAA 59.002 33.333 0.00 0.00 39.39 1.40
83 84 7.445096 CACATAGTGGATGCTGATAAACCAATA 59.555 37.037 0.00 0.00 39.39 1.90
84 85 6.263842 CACATAGTGGATGCTGATAAACCAAT 59.736 38.462 0.00 0.00 39.39 3.16
85 86 5.589855 CACATAGTGGATGCTGATAAACCAA 59.410 40.000 0.00 0.00 39.39 3.67
86 87 5.125356 CACATAGTGGATGCTGATAAACCA 58.875 41.667 0.00 0.00 39.39 3.67
87 88 4.023707 GCACATAGTGGATGCTGATAAACC 60.024 45.833 0.00 0.00 39.39 3.27
88 89 4.576053 TGCACATAGTGGATGCTGATAAAC 59.424 41.667 0.00 0.00 39.39 2.01
89 90 4.779696 TGCACATAGTGGATGCTGATAAA 58.220 39.130 0.00 0.00 39.39 1.40
90 91 4.420522 TGCACATAGTGGATGCTGATAA 57.579 40.909 0.00 0.00 39.39 1.75
91 92 4.420522 TTGCACATAGTGGATGCTGATA 57.579 40.909 0.00 0.00 39.39 2.15
92 93 3.286329 TTGCACATAGTGGATGCTGAT 57.714 42.857 0.00 0.00 39.39 2.90
93 94 2.785540 TTGCACATAGTGGATGCTGA 57.214 45.000 0.00 0.00 39.39 4.26
94 95 2.098607 CCTTTGCACATAGTGGATGCTG 59.901 50.000 0.00 0.00 39.39 4.41
95 96 2.291153 ACCTTTGCACATAGTGGATGCT 60.291 45.455 0.00 0.00 39.39 3.79
96 97 2.094675 ACCTTTGCACATAGTGGATGC 58.905 47.619 0.00 0.00 39.39 3.91
97 98 3.346315 TCACCTTTGCACATAGTGGATG 58.654 45.455 0.00 0.00 41.79 3.51
98 99 3.719268 TCACCTTTGCACATAGTGGAT 57.281 42.857 0.00 0.00 33.22 3.41
99 100 3.008923 TCATCACCTTTGCACATAGTGGA 59.991 43.478 0.00 0.00 33.64 4.02
100 101 3.346315 TCATCACCTTTGCACATAGTGG 58.654 45.455 0.00 0.00 33.64 4.00
101 102 4.142534 CCTTCATCACCTTTGCACATAGTG 60.143 45.833 0.00 0.00 36.51 2.74
102 103 4.012374 CCTTCATCACCTTTGCACATAGT 58.988 43.478 0.00 0.00 0.00 2.12
103 104 3.181493 GCCTTCATCACCTTTGCACATAG 60.181 47.826 0.00 0.00 0.00 2.23
104 105 2.754552 GCCTTCATCACCTTTGCACATA 59.245 45.455 0.00 0.00 0.00 2.29
105 106 1.547372 GCCTTCATCACCTTTGCACAT 59.453 47.619 0.00 0.00 0.00 3.21
106 107 0.961019 GCCTTCATCACCTTTGCACA 59.039 50.000 0.00 0.00 0.00 4.57
107 108 0.961019 TGCCTTCATCACCTTTGCAC 59.039 50.000 0.00 0.00 0.00 4.57
108 109 1.702182 TTGCCTTCATCACCTTTGCA 58.298 45.000 0.00 0.00 0.00 4.08
109 110 2.818130 TTTGCCTTCATCACCTTTGC 57.182 45.000 0.00 0.00 0.00 3.68
110 111 9.252962 GATAATATTTTGCCTTCATCACCTTTG 57.747 33.333 0.00 0.00 0.00 2.77
111 112 8.424133 GGATAATATTTTGCCTTCATCACCTTT 58.576 33.333 0.00 0.00 0.00 3.11
112 113 7.786464 AGGATAATATTTTGCCTTCATCACCTT 59.214 33.333 0.00 0.00 0.00 3.50
113 114 7.300658 AGGATAATATTTTGCCTTCATCACCT 58.699 34.615 0.00 0.00 0.00 4.00
114 115 7.530426 AGGATAATATTTTGCCTTCATCACC 57.470 36.000 0.00 0.00 0.00 4.02
115 116 8.416329 ACAAGGATAATATTTTGCCTTCATCAC 58.584 33.333 11.19 0.00 36.86 3.06
116 117 8.415553 CACAAGGATAATATTTTGCCTTCATCA 58.584 33.333 11.19 0.00 36.86 3.07
117 118 7.869429 CCACAAGGATAATATTTTGCCTTCATC 59.131 37.037 11.19 0.00 36.86 2.92
118 119 7.202029 CCCACAAGGATAATATTTTGCCTTCAT 60.202 37.037 11.19 3.66 36.86 2.57
119 120 6.098124 CCCACAAGGATAATATTTTGCCTTCA 59.902 38.462 11.19 0.00 36.86 3.02
120 121 6.515832 CCCACAAGGATAATATTTTGCCTTC 58.484 40.000 11.19 0.00 36.86 3.46
121 122 5.163311 GCCCACAAGGATAATATTTTGCCTT 60.163 40.000 9.23 9.23 39.42 4.35
122 123 4.344968 GCCCACAAGGATAATATTTTGCCT 59.655 41.667 0.00 0.00 38.24 4.75
123 124 4.100808 TGCCCACAAGGATAATATTTTGCC 59.899 41.667 0.00 0.00 38.24 4.52
124 125 5.275067 TGCCCACAAGGATAATATTTTGC 57.725 39.130 0.00 0.00 38.24 3.68
125 126 6.819284 ACATGCCCACAAGGATAATATTTTG 58.181 36.000 0.00 0.00 38.24 2.44
126 127 6.041979 GGACATGCCCACAAGGATAATATTTT 59.958 38.462 0.00 0.00 38.24 1.82
127 128 5.539955 GGACATGCCCACAAGGATAATATTT 59.460 40.000 0.00 0.00 38.24 1.40
128 129 5.079643 GGACATGCCCACAAGGATAATATT 58.920 41.667 0.00 0.00 38.24 1.28
129 130 4.354987 AGGACATGCCCACAAGGATAATAT 59.645 41.667 0.00 0.00 38.24 1.28
130 131 3.721575 AGGACATGCCCACAAGGATAATA 59.278 43.478 0.00 0.00 38.24 0.98
131 132 2.515429 AGGACATGCCCACAAGGATAAT 59.485 45.455 0.00 0.00 38.24 1.28
132 133 1.922447 AGGACATGCCCACAAGGATAA 59.078 47.619 0.00 0.00 38.24 1.75
133 134 1.212688 CAGGACATGCCCACAAGGATA 59.787 52.381 0.00 0.00 38.24 2.59
134 135 0.033796 CAGGACATGCCCACAAGGAT 60.034 55.000 0.00 0.00 38.24 3.24
135 136 1.379916 CAGGACATGCCCACAAGGA 59.620 57.895 0.00 0.00 38.24 3.36
136 137 1.679977 CCAGGACATGCCCACAAGG 60.680 63.158 0.00 0.00 37.37 3.61
137 138 0.033796 ATCCAGGACATGCCCACAAG 60.034 55.000 0.00 0.00 37.37 3.16
138 139 1.294041 TATCCAGGACATGCCCACAA 58.706 50.000 0.00 0.00 37.37 3.33
139 140 1.143481 CATATCCAGGACATGCCCACA 59.857 52.381 0.00 0.00 37.37 4.17
140 141 1.546323 CCATATCCAGGACATGCCCAC 60.546 57.143 1.61 0.00 37.37 4.61
141 142 0.773014 CCATATCCAGGACATGCCCA 59.227 55.000 1.61 0.00 37.37 5.36
142 143 0.773644 ACCATATCCAGGACATGCCC 59.226 55.000 1.61 0.00 37.37 5.36
143 144 1.701847 AGACCATATCCAGGACATGCC 59.298 52.381 1.61 0.00 0.00 4.40
144 145 2.289945 GGAGACCATATCCAGGACATGC 60.290 54.545 1.61 0.00 36.79 4.06
145 146 3.692257 GGAGACCATATCCAGGACATG 57.308 52.381 0.00 0.00 36.79 3.21
160 161 2.892425 CATCGCTTGCGGGGAGAC 60.892 66.667 15.10 0.00 40.21 3.36
161 162 3.371097 GACATCGCTTGCGGGGAGA 62.371 63.158 15.10 0.00 40.21 3.71
162 163 2.892425 GACATCGCTTGCGGGGAG 60.892 66.667 15.10 5.46 40.21 4.30
163 164 4.812476 CGACATCGCTTGCGGGGA 62.812 66.667 15.10 0.00 41.11 4.81
166 167 3.853330 CACCGACATCGCTTGCGG 61.853 66.667 15.10 14.47 45.00 5.69
167 168 4.505217 GCACCGACATCGCTTGCG 62.505 66.667 8.87 8.87 37.20 4.85
168 169 4.166011 GGCACCGACATCGCTTGC 62.166 66.667 14.43 14.43 42.44 4.01
169 170 2.034879 AAGGCACCGACATCGCTTG 61.035 57.895 0.00 0.00 38.18 4.01
170 171 2.034879 CAAGGCACCGACATCGCTT 61.035 57.895 0.00 0.00 38.18 4.68
171 172 2.434884 CAAGGCACCGACATCGCT 60.435 61.111 0.00 0.00 38.18 4.93
172 173 3.499737 CCAAGGCACCGACATCGC 61.500 66.667 0.00 0.00 38.18 4.58
173 174 3.499737 GCCAAGGCACCGACATCG 61.500 66.667 6.14 0.00 41.49 3.84
181 182 5.395360 ATGCATAACATTTTGCCAAGGCAC 61.395 41.667 14.36 0.00 43.57 5.01
182 183 3.307550 ATGCATAACATTTTGCCAAGGCA 60.308 39.130 10.24 10.24 42.64 4.75
183 184 2.697654 TGCATAACATTTTGCCAAGGC 58.302 42.857 3.61 3.61 38.08 4.35
184 185 3.623960 CCATGCATAACATTTTGCCAAGG 59.376 43.478 0.00 1.39 36.64 3.61
185 186 3.064271 GCCATGCATAACATTTTGCCAAG 59.936 43.478 0.00 0.00 36.64 3.61
186 187 3.008330 GCCATGCATAACATTTTGCCAA 58.992 40.909 0.00 0.00 36.64 4.52
187 188 2.630158 GCCATGCATAACATTTTGCCA 58.370 42.857 0.00 0.00 36.64 4.92
188 189 1.941975 GGCCATGCATAACATTTTGCC 59.058 47.619 0.00 0.00 36.64 4.52
189 190 2.908916 AGGCCATGCATAACATTTTGC 58.091 42.857 5.01 0.65 36.64 3.68
190 191 5.006941 GCTTAAGGCCATGCATAACATTTTG 59.993 40.000 5.01 0.00 36.64 2.44
191 192 5.118286 GCTTAAGGCCATGCATAACATTTT 58.882 37.500 5.01 0.00 36.64 1.82
192 193 4.696455 GCTTAAGGCCATGCATAACATTT 58.304 39.130 5.01 0.00 36.64 2.32
193 194 4.326504 GCTTAAGGCCATGCATAACATT 57.673 40.909 5.01 0.70 36.64 2.71
206 207 2.262211 CATTTTGAAGCGGCTTAAGGC 58.738 47.619 16.38 18.70 40.90 4.35
207 208 2.231235 ACCATTTTGAAGCGGCTTAAGG 59.769 45.455 16.38 8.96 0.00 2.69
208 209 3.244976 CACCATTTTGAAGCGGCTTAAG 58.755 45.455 16.38 0.00 0.00 1.85
209 210 2.625790 ACACCATTTTGAAGCGGCTTAA 59.374 40.909 16.38 5.21 0.00 1.85
210 211 2.227865 GACACCATTTTGAAGCGGCTTA 59.772 45.455 16.38 0.00 0.00 3.09
211 212 1.000274 GACACCATTTTGAAGCGGCTT 60.000 47.619 16.36 16.36 0.00 4.35
212 213 0.598065 GACACCATTTTGAAGCGGCT 59.402 50.000 0.00 0.00 0.00 5.52
213 214 0.313672 TGACACCATTTTGAAGCGGC 59.686 50.000 0.00 0.00 0.00 6.53
214 215 3.302365 AATGACACCATTTTGAAGCGG 57.698 42.857 0.00 0.00 39.86 5.52
223 224 6.638610 TCAAAACACTTCAAATGACACCATT 58.361 32.000 0.00 0.00 44.38 3.16
224 225 6.219417 TCAAAACACTTCAAATGACACCAT 57.781 33.333 0.00 0.00 33.66 3.55
225 226 5.651387 TCAAAACACTTCAAATGACACCA 57.349 34.783 0.00 0.00 0.00 4.17
226 227 5.463061 CCATCAAAACACTTCAAATGACACC 59.537 40.000 0.00 0.00 0.00 4.16
227 228 6.019640 CACCATCAAAACACTTCAAATGACAC 60.020 38.462 0.00 0.00 0.00 3.67
228 229 6.041511 CACCATCAAAACACTTCAAATGACA 58.958 36.000 0.00 0.00 0.00 3.58
229 230 5.050837 GCACCATCAAAACACTTCAAATGAC 60.051 40.000 0.00 0.00 0.00 3.06
230 231 5.049167 GCACCATCAAAACACTTCAAATGA 58.951 37.500 0.00 0.00 0.00 2.57
231 232 5.051816 AGCACCATCAAAACACTTCAAATG 58.948 37.500 0.00 0.00 0.00 2.32
232 233 5.280654 AGCACCATCAAAACACTTCAAAT 57.719 34.783 0.00 0.00 0.00 2.32
233 234 4.734398 AGCACCATCAAAACACTTCAAA 57.266 36.364 0.00 0.00 0.00 2.69
234 235 4.887071 ACTAGCACCATCAAAACACTTCAA 59.113 37.500 0.00 0.00 0.00 2.69
235 236 4.460263 ACTAGCACCATCAAAACACTTCA 58.540 39.130 0.00 0.00 0.00 3.02
236 237 6.743575 ATACTAGCACCATCAAAACACTTC 57.256 37.500 0.00 0.00 0.00 3.01
237 238 8.630054 TTTATACTAGCACCATCAAAACACTT 57.370 30.769 0.00 0.00 0.00 3.16
238 239 8.807948 ATTTATACTAGCACCATCAAAACACT 57.192 30.769 0.00 0.00 0.00 3.55
245 246 9.725019 CTCCAAATATTTATACTAGCACCATCA 57.275 33.333 0.00 0.00 0.00 3.07
246 247 9.944376 TCTCCAAATATTTATACTAGCACCATC 57.056 33.333 0.00 0.00 0.00 3.51
247 248 9.950496 CTCTCCAAATATTTATACTAGCACCAT 57.050 33.333 0.00 0.00 0.00 3.55
248 249 8.375506 CCTCTCCAAATATTTATACTAGCACCA 58.624 37.037 0.00 0.00 0.00 4.17
249 250 8.376270 ACCTCTCCAAATATTTATACTAGCACC 58.624 37.037 0.00 0.00 0.00 5.01
258 259 9.847224 ACGACAATTACCTCTCCAAATATTTAT 57.153 29.630 0.00 0.00 0.00 1.40
259 260 9.321562 GACGACAATTACCTCTCCAAATATTTA 57.678 33.333 0.00 0.00 0.00 1.40
260 261 7.282450 GGACGACAATTACCTCTCCAAATATTT 59.718 37.037 0.00 0.00 0.00 1.40
261 262 6.766467 GGACGACAATTACCTCTCCAAATATT 59.234 38.462 0.00 0.00 0.00 1.28
262 263 6.289064 GGACGACAATTACCTCTCCAAATAT 58.711 40.000 0.00 0.00 0.00 1.28
263 264 5.395990 GGGACGACAATTACCTCTCCAAATA 60.396 44.000 0.00 0.00 0.00 1.40
264 265 4.514401 GGACGACAATTACCTCTCCAAAT 58.486 43.478 0.00 0.00 0.00 2.32
265 266 3.307199 GGGACGACAATTACCTCTCCAAA 60.307 47.826 0.00 0.00 0.00 3.28
266 267 2.235402 GGGACGACAATTACCTCTCCAA 59.765 50.000 0.00 0.00 0.00 3.53
267 268 1.829222 GGGACGACAATTACCTCTCCA 59.171 52.381 0.00 0.00 0.00 3.86
268 269 1.829222 TGGGACGACAATTACCTCTCC 59.171 52.381 0.00 0.00 0.00 3.71
269 270 3.604875 TTGGGACGACAATTACCTCTC 57.395 47.619 0.00 0.00 0.00 3.20
270 271 3.581332 TCTTTGGGACGACAATTACCTCT 59.419 43.478 0.00 0.00 0.00 3.69
271 272 3.934068 TCTTTGGGACGACAATTACCTC 58.066 45.455 0.00 0.00 0.00 3.85
272 273 4.569719 ATCTTTGGGACGACAATTACCT 57.430 40.909 0.00 0.00 0.00 3.08
273 274 6.937436 ATAATCTTTGGGACGACAATTACC 57.063 37.500 0.00 0.00 0.00 2.85
274 275 8.718734 GGATATAATCTTTGGGACGACAATTAC 58.281 37.037 0.00 0.00 0.00 1.89
275 276 8.433599 TGGATATAATCTTTGGGACGACAATTA 58.566 33.333 0.00 0.00 0.00 1.40
276 277 7.287061 TGGATATAATCTTTGGGACGACAATT 58.713 34.615 0.00 0.00 0.00 2.32
277 278 6.837312 TGGATATAATCTTTGGGACGACAAT 58.163 36.000 0.00 0.00 0.00 2.71
278 279 6.241882 TGGATATAATCTTTGGGACGACAA 57.758 37.500 0.00 0.00 0.00 3.18
279 280 5.880164 TGGATATAATCTTTGGGACGACA 57.120 39.130 0.00 0.00 0.00 4.35
280 281 7.066525 TGTTTTGGATATAATCTTTGGGACGAC 59.933 37.037 0.00 0.00 0.00 4.34
281 282 7.113437 TGTTTTGGATATAATCTTTGGGACGA 58.887 34.615 0.00 0.00 0.00 4.20
282 283 7.328277 TGTTTTGGATATAATCTTTGGGACG 57.672 36.000 0.00 0.00 0.00 4.79
304 305 9.657419 AGTTCAATTCTTCAAAACAGAATTTGT 57.343 25.926 5.36 0.00 44.96 2.83
308 309 8.084684 GCCTAGTTCAATTCTTCAAAACAGAAT 58.915 33.333 0.00 0.00 41.84 2.40
309 310 7.285401 AGCCTAGTTCAATTCTTCAAAACAGAA 59.715 33.333 0.00 0.00 34.74 3.02
310 311 6.772716 AGCCTAGTTCAATTCTTCAAAACAGA 59.227 34.615 0.00 0.00 0.00 3.41
311 312 6.974965 AGCCTAGTTCAATTCTTCAAAACAG 58.025 36.000 0.00 0.00 0.00 3.16
312 313 6.959639 AGCCTAGTTCAATTCTTCAAAACA 57.040 33.333 0.00 0.00 0.00 2.83
313 314 9.744468 TTTAAGCCTAGTTCAATTCTTCAAAAC 57.256 29.630 0.00 0.00 0.00 2.43
315 316 9.912634 CATTTAAGCCTAGTTCAATTCTTCAAA 57.087 29.630 0.00 0.00 0.00 2.69
316 317 8.522830 CCATTTAAGCCTAGTTCAATTCTTCAA 58.477 33.333 0.00 0.00 0.00 2.69
317 318 7.122650 CCCATTTAAGCCTAGTTCAATTCTTCA 59.877 37.037 0.00 0.00 0.00 3.02
318 319 7.122799 ACCCATTTAAGCCTAGTTCAATTCTTC 59.877 37.037 0.00 0.00 0.00 2.87
319 320 6.954102 ACCCATTTAAGCCTAGTTCAATTCTT 59.046 34.615 0.00 0.00 0.00 2.52
320 321 6.494059 ACCCATTTAAGCCTAGTTCAATTCT 58.506 36.000 0.00 0.00 0.00 2.40
321 322 6.775594 ACCCATTTAAGCCTAGTTCAATTC 57.224 37.500 0.00 0.00 0.00 2.17
322 323 7.016170 ACAAACCCATTTAAGCCTAGTTCAATT 59.984 33.333 0.00 0.00 0.00 2.32
323 324 6.496911 ACAAACCCATTTAAGCCTAGTTCAAT 59.503 34.615 0.00 0.00 0.00 2.57
324 325 5.836358 ACAAACCCATTTAAGCCTAGTTCAA 59.164 36.000 0.00 0.00 0.00 2.69
325 326 5.242838 CACAAACCCATTTAAGCCTAGTTCA 59.757 40.000 0.00 0.00 0.00 3.18
326 327 5.475564 TCACAAACCCATTTAAGCCTAGTTC 59.524 40.000 0.00 0.00 0.00 3.01
327 328 5.390387 TCACAAACCCATTTAAGCCTAGTT 58.610 37.500 0.00 0.00 0.00 2.24
328 329 4.993028 TCACAAACCCATTTAAGCCTAGT 58.007 39.130 0.00 0.00 0.00 2.57
329 330 5.010282 ACTCACAAACCCATTTAAGCCTAG 58.990 41.667 0.00 0.00 0.00 3.02
330 331 4.993028 ACTCACAAACCCATTTAAGCCTA 58.007 39.130 0.00 0.00 0.00 3.93
331 332 3.844640 ACTCACAAACCCATTTAAGCCT 58.155 40.909 0.00 0.00 0.00 4.58
332 333 4.600692 AACTCACAAACCCATTTAAGCC 57.399 40.909 0.00 0.00 0.00 4.35
333 334 6.526674 CGAATAACTCACAAACCCATTTAAGC 59.473 38.462 0.00 0.00 0.00 3.09
334 335 7.537306 CACGAATAACTCACAAACCCATTTAAG 59.463 37.037 0.00 0.00 0.00 1.85
335 336 7.228906 TCACGAATAACTCACAAACCCATTTAA 59.771 33.333 0.00 0.00 0.00 1.52
336 337 6.711194 TCACGAATAACTCACAAACCCATTTA 59.289 34.615 0.00 0.00 0.00 1.40
337 338 5.533154 TCACGAATAACTCACAAACCCATTT 59.467 36.000 0.00 0.00 0.00 2.32
338 339 5.067273 TCACGAATAACTCACAAACCCATT 58.933 37.500 0.00 0.00 0.00 3.16
339 340 4.647611 TCACGAATAACTCACAAACCCAT 58.352 39.130 0.00 0.00 0.00 4.00
340 341 4.062293 CTCACGAATAACTCACAAACCCA 58.938 43.478 0.00 0.00 0.00 4.51
341 342 4.312443 TCTCACGAATAACTCACAAACCC 58.688 43.478 0.00 0.00 0.00 4.11
342 343 4.389077 CCTCTCACGAATAACTCACAAACC 59.611 45.833 0.00 0.00 0.00 3.27
343 344 4.389077 CCCTCTCACGAATAACTCACAAAC 59.611 45.833 0.00 0.00 0.00 2.93
344 345 4.039973 ACCCTCTCACGAATAACTCACAAA 59.960 41.667 0.00 0.00 0.00 2.83
345 346 3.576982 ACCCTCTCACGAATAACTCACAA 59.423 43.478 0.00 0.00 0.00 3.33
346 347 3.162666 ACCCTCTCACGAATAACTCACA 58.837 45.455 0.00 0.00 0.00 3.58
347 348 3.444388 AGACCCTCTCACGAATAACTCAC 59.556 47.826 0.00 0.00 0.00 3.51
348 349 3.698289 AGACCCTCTCACGAATAACTCA 58.302 45.455 0.00 0.00 0.00 3.41
349 350 4.722361 AAGACCCTCTCACGAATAACTC 57.278 45.455 0.00 0.00 0.00 3.01
350 351 5.485209 AAAAGACCCTCTCACGAATAACT 57.515 39.130 0.00 0.00 0.00 2.24
371 372 2.559231 GGTACGCCTCCATTTCCAAAAA 59.441 45.455 0.00 0.00 0.00 1.94
372 373 2.164338 GGTACGCCTCCATTTCCAAAA 58.836 47.619 0.00 0.00 0.00 2.44
373 374 1.614850 GGGTACGCCTCCATTTCCAAA 60.615 52.381 0.00 0.00 34.45 3.28
374 375 0.034863 GGGTACGCCTCCATTTCCAA 60.035 55.000 0.00 0.00 34.45 3.53
375 376 1.605453 GGGTACGCCTCCATTTCCA 59.395 57.895 0.00 0.00 34.45 3.53
376 377 1.153025 GGGGTACGCCTCCATTTCC 60.153 63.158 21.18 0.00 34.11 3.13
377 378 4.553668 GGGGTACGCCTCCATTTC 57.446 61.111 21.18 0.00 34.11 2.17
389 390 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
392 393 3.882326 ATGATGCAGAGGCCGGGG 61.882 66.667 2.18 0.00 40.13 5.73
393 394 2.407440 ATCATGATGCAGAGGCCGGG 62.407 60.000 7.59 0.00 40.13 5.73
394 395 1.072678 ATCATGATGCAGAGGCCGG 59.927 57.895 7.59 0.00 40.13 6.13
395 396 0.250166 TCATCATGATGCAGAGGCCG 60.250 55.000 27.68 4.34 40.13 6.13
396 397 1.813178 CATCATCATGATGCAGAGGCC 59.187 52.381 27.68 0.00 46.37 5.19
405 406 1.546029 GGCTGCATGCATCATCATGAT 59.454 47.619 22.97 1.18 44.94 2.45
406 407 0.958822 GGCTGCATGCATCATCATGA 59.041 50.000 22.97 0.00 44.94 3.07
407 408 0.673437 TGGCTGCATGCATCATCATG 59.327 50.000 22.97 8.76 44.93 3.07
408 409 1.546029 GATGGCTGCATGCATCATCAT 59.454 47.619 34.72 27.42 45.15 2.45
409 410 0.958822 GATGGCTGCATGCATCATCA 59.041 50.000 34.72 25.17 45.15 3.07
410 411 1.248486 AGATGGCTGCATGCATCATC 58.752 50.000 33.79 33.79 45.15 2.92
411 412 1.704641 AAGATGGCTGCATGCATCAT 58.295 45.000 26.51 26.51 45.15 2.45
412 413 2.351706 TAAGATGGCTGCATGCATCA 57.648 45.000 22.97 21.78 45.15 3.07
413 414 3.936372 AATAAGATGGCTGCATGCATC 57.064 42.857 22.97 17.75 45.15 3.91
414 415 5.794726 TTTAATAAGATGGCTGCATGCAT 57.205 34.783 22.97 5.92 45.15 3.96
415 416 5.595257 TTTTAATAAGATGGCTGCATGCA 57.405 34.783 21.29 21.29 45.15 3.96
416 417 6.044682 ACTTTTTAATAAGATGGCTGCATGC 58.955 36.000 11.82 11.82 41.94 4.06
417 418 7.486647 AGACTTTTTAATAAGATGGCTGCATG 58.513 34.615 11.97 0.00 0.00 4.06
418 419 7.340232 TGAGACTTTTTAATAAGATGGCTGCAT 59.660 33.333 11.97 0.00 0.00 3.96
419 420 6.658816 TGAGACTTTTTAATAAGATGGCTGCA 59.341 34.615 11.97 0.00 0.00 4.41
420 421 7.088589 TGAGACTTTTTAATAAGATGGCTGC 57.911 36.000 11.97 0.00 0.00 5.25
421 422 9.565213 CTTTGAGACTTTTTAATAAGATGGCTG 57.435 33.333 11.97 0.00 0.00 4.85
422 423 9.301897 ACTTTGAGACTTTTTAATAAGATGGCT 57.698 29.630 11.97 4.44 0.00 4.75
431 432 9.736023 CTTTGTGCTACTTTGAGACTTTTTAAT 57.264 29.630 0.00 0.00 0.00 1.40
432 433 8.736244 ACTTTGTGCTACTTTGAGACTTTTTAA 58.264 29.630 0.00 0.00 0.00 1.52
433 434 8.276252 ACTTTGTGCTACTTTGAGACTTTTTA 57.724 30.769 0.00 0.00 0.00 1.52
434 435 7.094377 TGACTTTGTGCTACTTTGAGACTTTTT 60.094 33.333 0.00 0.00 0.00 1.94
435 436 6.374333 TGACTTTGTGCTACTTTGAGACTTTT 59.626 34.615 0.00 0.00 0.00 2.27
436 437 5.880332 TGACTTTGTGCTACTTTGAGACTTT 59.120 36.000 0.00 0.00 0.00 2.66
437 438 5.428253 TGACTTTGTGCTACTTTGAGACTT 58.572 37.500 0.00 0.00 0.00 3.01
438 439 5.023533 TGACTTTGTGCTACTTTGAGACT 57.976 39.130 0.00 0.00 0.00 3.24
439 440 5.931441 ATGACTTTGTGCTACTTTGAGAC 57.069 39.130 0.00 0.00 0.00 3.36
440 441 7.173218 CCTTTATGACTTTGTGCTACTTTGAGA 59.827 37.037 0.00 0.00 0.00 3.27
441 442 7.041098 ACCTTTATGACTTTGTGCTACTTTGAG 60.041 37.037 0.00 0.00 0.00 3.02
442 443 6.770785 ACCTTTATGACTTTGTGCTACTTTGA 59.229 34.615 0.00 0.00 0.00 2.69
443 444 6.970484 ACCTTTATGACTTTGTGCTACTTTG 58.030 36.000 0.00 0.00 0.00 2.77
444 445 8.863872 ATACCTTTATGACTTTGTGCTACTTT 57.136 30.769 0.00 0.00 0.00 2.66
445 446 8.863872 AATACCTTTATGACTTTGTGCTACTT 57.136 30.769 0.00 0.00 0.00 2.24
446 447 9.379791 GTAATACCTTTATGACTTTGTGCTACT 57.620 33.333 0.00 0.00 0.00 2.57
447 448 9.158233 TGTAATACCTTTATGACTTTGTGCTAC 57.842 33.333 0.00 0.00 0.00 3.58
448 449 9.378551 CTGTAATACCTTTATGACTTTGTGCTA 57.621 33.333 0.00 0.00 0.00 3.49
449 450 7.148239 GCTGTAATACCTTTATGACTTTGTGCT 60.148 37.037 0.00 0.00 0.00 4.40
450 451 6.967199 GCTGTAATACCTTTATGACTTTGTGC 59.033 38.462 0.00 0.00 0.00 4.57
451 452 8.268850 AGCTGTAATACCTTTATGACTTTGTG 57.731 34.615 0.00 0.00 0.00 3.33
452 453 7.277981 CGAGCTGTAATACCTTTATGACTTTGT 59.722 37.037 0.00 0.00 0.00 2.83
453 454 7.621991 CGAGCTGTAATACCTTTATGACTTTG 58.378 38.462 0.00 0.00 0.00 2.77
454 455 6.258068 GCGAGCTGTAATACCTTTATGACTTT 59.742 38.462 0.00 0.00 0.00 2.66
455 456 5.753921 GCGAGCTGTAATACCTTTATGACTT 59.246 40.000 0.00 0.00 0.00 3.01
456 457 5.163447 TGCGAGCTGTAATACCTTTATGACT 60.163 40.000 0.00 0.00 0.00 3.41
457 458 5.047847 TGCGAGCTGTAATACCTTTATGAC 58.952 41.667 0.00 0.00 0.00 3.06
458 459 5.270893 TGCGAGCTGTAATACCTTTATGA 57.729 39.130 0.00 0.00 0.00 2.15
459 460 5.559035 GCTTGCGAGCTGTAATACCTTTATG 60.559 44.000 19.25 0.00 45.65 1.90
460 461 4.511826 GCTTGCGAGCTGTAATACCTTTAT 59.488 41.667 19.25 0.00 45.65 1.40
461 462 3.869246 GCTTGCGAGCTGTAATACCTTTA 59.131 43.478 19.25 0.00 45.65 1.85
462 463 2.678336 GCTTGCGAGCTGTAATACCTTT 59.322 45.455 19.25 0.00 45.65 3.11
463 464 2.280628 GCTTGCGAGCTGTAATACCTT 58.719 47.619 19.25 0.00 45.65 3.50
464 465 1.802880 CGCTTGCGAGCTGTAATACCT 60.803 52.381 23.42 0.00 46.96 3.08
465 466 0.577269 CGCTTGCGAGCTGTAATACC 59.423 55.000 23.42 0.00 46.96 2.73
466 467 0.577269 CCGCTTGCGAGCTGTAATAC 59.423 55.000 23.42 0.00 46.96 1.89
467 468 0.458260 TCCGCTTGCGAGCTGTAATA 59.542 50.000 23.42 0.00 46.96 0.98
468 469 0.807667 CTCCGCTTGCGAGCTGTAAT 60.808 55.000 23.42 0.00 46.96 1.89
469 470 1.446099 CTCCGCTTGCGAGCTGTAA 60.446 57.895 23.42 5.45 46.96 2.41
470 471 2.181777 CTCCGCTTGCGAGCTGTA 59.818 61.111 23.42 7.85 46.96 2.74
475 476 1.441016 GTTTTGCTCCGCTTGCGAG 60.441 57.895 16.99 12.25 0.00 5.03
476 477 1.719725 TTGTTTTGCTCCGCTTGCGA 61.720 50.000 16.99 2.09 0.00 5.10
477 478 0.869454 TTTGTTTTGCTCCGCTTGCG 60.869 50.000 8.14 8.14 0.00 4.85
478 479 0.854705 CTTTGTTTTGCTCCGCTTGC 59.145 50.000 0.00 0.00 0.00 4.01
479 480 2.490328 TCTTTGTTTTGCTCCGCTTG 57.510 45.000 0.00 0.00 0.00 4.01
480 481 3.518634 TTTCTTTGTTTTGCTCCGCTT 57.481 38.095 0.00 0.00 0.00 4.68
481 482 3.518634 TTTTCTTTGTTTTGCTCCGCT 57.481 38.095 0.00 0.00 0.00 5.52
482 483 5.898630 TTATTTTCTTTGTTTTGCTCCGC 57.101 34.783 0.00 0.00 0.00 5.54
483 484 7.845622 CACTTTTATTTTCTTTGTTTTGCTCCG 59.154 33.333 0.00 0.00 0.00 4.63
484 485 8.664798 ACACTTTTATTTTCTTTGTTTTGCTCC 58.335 29.630 0.00 0.00 0.00 4.70
491 492 9.476202 GGAGCATACACTTTTATTTTCTTTGTT 57.524 29.630 0.00 0.00 0.00 2.83
492 493 8.637986 TGGAGCATACACTTTTATTTTCTTTGT 58.362 29.630 0.00 0.00 0.00 2.83
493 494 9.474920 TTGGAGCATACACTTTTATTTTCTTTG 57.525 29.630 0.00 0.00 0.00 2.77
496 497 9.476202 GTTTTGGAGCATACACTTTTATTTTCT 57.524 29.630 0.00 0.00 0.00 2.52
497 498 9.255304 TGTTTTGGAGCATACACTTTTATTTTC 57.745 29.630 0.00 0.00 0.00 2.29
498 499 9.040939 GTGTTTTGGAGCATACACTTTTATTTT 57.959 29.630 0.00 0.00 38.23 1.82
499 500 8.200792 TGTGTTTTGGAGCATACACTTTTATTT 58.799 29.630 0.00 0.00 41.03 1.40
500 501 7.721402 TGTGTTTTGGAGCATACACTTTTATT 58.279 30.769 0.00 0.00 41.03 1.40
501 502 7.283625 TGTGTTTTGGAGCATACACTTTTAT 57.716 32.000 0.00 0.00 41.03 1.40
502 503 6.701145 TGTGTTTTGGAGCATACACTTTTA 57.299 33.333 0.00 0.00 41.03 1.52
503 504 5.590530 TGTGTTTTGGAGCATACACTTTT 57.409 34.783 0.00 0.00 41.03 2.27
504 505 5.348164 GTTGTGTTTTGGAGCATACACTTT 58.652 37.500 0.00 0.00 41.03 2.66
505 506 4.202111 GGTTGTGTTTTGGAGCATACACTT 60.202 41.667 0.00 0.00 41.03 3.16
506 507 3.317993 GGTTGTGTTTTGGAGCATACACT 59.682 43.478 0.00 0.00 41.03 3.55
507 508 3.638484 GGTTGTGTTTTGGAGCATACAC 58.362 45.455 0.00 0.00 40.87 2.90
508 509 2.292016 CGGTTGTGTTTTGGAGCATACA 59.708 45.455 0.00 0.00 0.00 2.29
509 510 2.351350 CCGGTTGTGTTTTGGAGCATAC 60.351 50.000 0.00 0.00 0.00 2.39
510 511 1.883275 CCGGTTGTGTTTTGGAGCATA 59.117 47.619 0.00 0.00 0.00 3.14
511 512 0.673437 CCGGTTGTGTTTTGGAGCAT 59.327 50.000 0.00 0.00 0.00 3.79
512 513 0.681564 ACCGGTTGTGTTTTGGAGCA 60.682 50.000 0.00 0.00 0.00 4.26
513 514 1.310904 TACCGGTTGTGTTTTGGAGC 58.689 50.000 15.04 0.00 0.00 4.70
514 515 2.292292 CCTTACCGGTTGTGTTTTGGAG 59.708 50.000 15.04 0.00 0.00 3.86
515 516 2.299521 CCTTACCGGTTGTGTTTTGGA 58.700 47.619 15.04 0.00 0.00 3.53
516 517 1.269361 GCCTTACCGGTTGTGTTTTGG 60.269 52.381 15.04 5.00 34.25 3.28
517 518 1.405821 TGCCTTACCGGTTGTGTTTTG 59.594 47.619 15.04 0.00 34.25 2.44
518 519 1.765230 TGCCTTACCGGTTGTGTTTT 58.235 45.000 15.04 0.00 34.25 2.43
519 520 1.765230 TTGCCTTACCGGTTGTGTTT 58.235 45.000 15.04 0.00 34.25 2.83
520 521 1.989706 ATTGCCTTACCGGTTGTGTT 58.010 45.000 15.04 0.00 34.25 3.32
521 522 2.303600 TCTATTGCCTTACCGGTTGTGT 59.696 45.455 15.04 0.00 34.25 3.72
522 523 2.980568 TCTATTGCCTTACCGGTTGTG 58.019 47.619 15.04 1.87 34.25 3.33
523 524 3.706600 TTCTATTGCCTTACCGGTTGT 57.293 42.857 15.04 0.00 34.25 3.32
524 525 3.377172 CCTTTCTATTGCCTTACCGGTTG 59.623 47.826 15.04 6.33 34.25 3.77
525 526 3.264964 TCCTTTCTATTGCCTTACCGGTT 59.735 43.478 15.04 0.00 34.25 4.44
526 527 2.841881 TCCTTTCTATTGCCTTACCGGT 59.158 45.455 13.98 13.98 34.25 5.28
527 528 3.553828 TCCTTTCTATTGCCTTACCGG 57.446 47.619 0.00 0.00 0.00 5.28
528 529 5.179555 GCTTATCCTTTCTATTGCCTTACCG 59.820 44.000 0.00 0.00 0.00 4.02
529 530 6.299922 AGCTTATCCTTTCTATTGCCTTACC 58.700 40.000 0.00 0.00 0.00 2.85
530 531 6.428465 GGAGCTTATCCTTTCTATTGCCTTAC 59.572 42.308 0.00 0.00 45.64 2.34
531 532 6.534634 GGAGCTTATCCTTTCTATTGCCTTA 58.465 40.000 0.00 0.00 45.64 2.69
532 533 5.380900 GGAGCTTATCCTTTCTATTGCCTT 58.619 41.667 0.00 0.00 45.64 4.35
533 534 4.979335 GGAGCTTATCCTTTCTATTGCCT 58.021 43.478 0.00 0.00 45.64 4.75
546 547 6.490492 AGAATAGGAGTCTAGGGAGCTTATC 58.510 44.000 0.00 0.00 0.00 1.75
547 548 6.477901 AGAATAGGAGTCTAGGGAGCTTAT 57.522 41.667 0.00 0.00 0.00 1.73
548 549 5.933846 AGAATAGGAGTCTAGGGAGCTTA 57.066 43.478 0.00 0.00 0.00 3.09
549 550 4.825199 AGAATAGGAGTCTAGGGAGCTT 57.175 45.455 0.00 0.00 0.00 3.74
550 551 5.514500 CTAGAATAGGAGTCTAGGGAGCT 57.486 47.826 3.57 0.00 40.57 4.09
566 567 9.656323 GGGAAAAAGGATAATTAACCCTAGAAT 57.344 33.333 8.09 0.00 32.93 2.40
567 568 8.852894 AGGGAAAAAGGATAATTAACCCTAGAA 58.147 33.333 8.09 0.00 42.58 2.10
589 590 0.473694 ACATGGACACCACTGAGGGA 60.474 55.000 0.00 0.00 43.89 4.20
611 612 0.108945 GCATCTGAGGGCAAAACTGC 60.109 55.000 0.00 0.00 0.00 4.40
850 851 4.337060 CGCCGTGGTCACTGTCGA 62.337 66.667 0.00 0.00 0.00 4.20
853 854 3.499929 CTGTCGCCGTGGTCACTGT 62.500 63.158 0.00 0.00 0.00 3.55
855 856 2.910479 TCTGTCGCCGTGGTCACT 60.910 61.111 0.00 0.00 0.00 3.41
935 936 3.771160 CTAGCTTCCCACCGCCGT 61.771 66.667 0.00 0.00 0.00 5.68
987 988 1.206610 GAAGACATGGAGCTCAGAGCA 59.793 52.381 24.64 4.13 45.56 4.26
1123 1124 2.790468 CGTAGAACGGACGATTCTGGTC 60.790 54.545 14.97 0.00 44.39 4.02
1264 1265 1.999648 TCAGTCTTGGCCAAAGCATT 58.000 45.000 20.91 0.07 42.56 3.56
1270 1271 3.438216 TCATTCATCAGTCTTGGCCAA 57.562 42.857 19.25 19.25 0.00 4.52
1482 1486 3.204158 TCACCATACCTACAAATGCCCAT 59.796 43.478 0.00 0.00 0.00 4.00
1503 1507 4.980590 TCAACATTACAACCAATGCGATC 58.019 39.130 0.00 0.00 39.13 3.69
1510 1514 8.642432 TCCATACATTTTCAACATTACAACCAA 58.358 29.630 0.00 0.00 0.00 3.67
1692 1697 7.424227 TGCATTTCATTGATCAAAACTTTCC 57.576 32.000 13.09 0.55 0.00 3.13
1697 1702 5.867716 AGAGCTGCATTTCATTGATCAAAAC 59.132 36.000 13.09 0.00 0.00 2.43
1772 1779 1.591703 CCTGCACTTGGCTCTACGA 59.408 57.895 0.00 0.00 45.15 3.43
1794 1801 4.041464 TGGATGTAGTTGGCCCATTAGTA 58.959 43.478 0.00 0.00 0.00 1.82
1810 1817 2.586425 CGAATGGGCCTAATTGGATGT 58.414 47.619 4.53 0.00 38.35 3.06
1976 1983 4.370364 AATCACGGTGTATTTGGATTGC 57.630 40.909 8.17 0.00 0.00 3.56
1981 1988 8.749841 TTTGATTTAAATCACGGTGTATTTGG 57.250 30.769 26.69 0.00 44.54 3.28
2155 2165 3.319198 GGTTCGAGTCCCCAGCCA 61.319 66.667 0.00 0.00 0.00 4.75
2224 2234 4.264253 CCATGTCAAAGTCTTGCCATCTA 58.736 43.478 0.00 0.00 28.75 1.98
2331 2343 4.779696 AGTGCAAAACAATGGAAAACCAT 58.220 34.783 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.