Multiple sequence alignment - TraesCS5A01G549800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G549800 chr5A 100.000 3536 0 0 1 3536 703470078 703473613 0.000000e+00 6530
1 TraesCS5A01G549800 chr5A 79.887 353 67 3 3 351 670193624 670193272 4.530000e-64 255
2 TraesCS5A01G549800 chr4B 88.166 1445 167 4 1028 2470 663902021 663903463 0.000000e+00 1718
3 TraesCS5A01G549800 chr4B 87.950 1444 172 2 1028 2470 664677722 664679164 0.000000e+00 1701
4 TraesCS5A01G549800 chr4B 78.681 910 119 40 2644 3531 664679642 664680498 1.440000e-148 536
5 TraesCS5A01G549800 chr4B 80.796 427 56 16 2469 2874 664679212 664679633 9.530000e-81 311
6 TraesCS5A01G549800 chr4D 92.717 1071 59 5 2470 3536 507002447 507003502 0.000000e+00 1528
7 TraesCS5A01G549800 chr4D 92.308 624 48 0 1844 2467 507001772 507002395 0.000000e+00 887
8 TraesCS5A01G549800 chr4D 84.199 443 52 7 1 435 507000153 507000585 7.060000e-112 414
9 TraesCS5A01G549800 chr4D 81.303 353 62 3 3 351 488417498 488417850 2.080000e-72 283
10 TraesCS5A01G549800 chr4D 90.678 118 6 4 673 789 507000584 507000697 6.110000e-33 152
11 TraesCS5A01G549800 chr2B 80.266 1429 267 15 1050 2470 742172683 742171262 0.000000e+00 1062
12 TraesCS5A01G549800 chr2B 78.419 329 69 1 1 327 528162364 528162036 2.770000e-51 213
13 TraesCS5A01G549800 chr2D 80.126 1429 269 15 1050 2470 608578348 608576927 0.000000e+00 1051
14 TraesCS5A01G549800 chr7A 79.722 1440 275 16 1029 2461 563246772 563245343 0.000000e+00 1026
15 TraesCS5A01G549800 chr7A 78.881 1430 285 17 1050 2470 29009191 29007770 0.000000e+00 952
16 TraesCS5A01G549800 chr7A 78.531 1430 291 16 1050 2470 28808875 28807453 0.000000e+00 926
17 TraesCS5A01G549800 chr7A 78.322 1430 294 16 1050 2470 28845676 28844254 0.000000e+00 909
18 TraesCS5A01G549800 chr7B 79.337 1418 283 10 1049 2461 525598433 525597021 0.000000e+00 987
19 TraesCS5A01G549800 chrUn 78.531 1430 287 18 1050 2470 313533320 313531902 0.000000e+00 922
20 TraesCS5A01G549800 chrUn 92.276 246 18 1 431 675 266580221 266579976 7.260000e-92 348
21 TraesCS5A01G549800 chr1B 92.713 247 16 2 430 675 152079621 152079866 4.340000e-94 355
22 TraesCS5A01G549800 chr4A 92.623 244 18 0 432 675 565349080 565349323 5.620000e-93 351
23 TraesCS5A01G549800 chr3A 92.308 247 19 0 429 675 44724652 44724406 5.620000e-93 351
24 TraesCS5A01G549800 chr2A 90.875 263 21 3 420 681 478914588 478914848 2.020000e-92 350
25 TraesCS5A01G549800 chr2A 90.189 265 22 4 419 681 444369666 444369404 3.380000e-90 342
26 TraesCS5A01G549800 chr1A 92.623 244 16 2 432 674 70214992 70214750 2.020000e-92 350
27 TraesCS5A01G549800 chr1A 92.593 243 16 2 434 675 506278268 506278027 7.260000e-92 348
28 TraesCS5A01G549800 chr1A 91.304 253 20 2 433 684 562726961 562726710 9.400000e-91 344
29 TraesCS5A01G549800 chr1A 80.508 354 62 5 1 351 479033515 479033864 7.530000e-67 265
30 TraesCS5A01G549800 chr1D 80.114 352 67 3 1 350 6224139 6224489 3.500000e-65 259
31 TraesCS5A01G549800 chr1D 79.811 317 61 3 1 314 27923673 27923989 9.870000e-56 228
32 TraesCS5A01G549800 chr6D 80.696 316 58 3 7 320 89736310 89735996 3.530000e-60 243
33 TraesCS5A01G549800 chr7D 78.531 354 68 6 1 351 120535582 120535234 3.550000e-55 226


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G549800 chr5A 703470078 703473613 3535 False 6530.000000 6530 100.000000 1 3536 1 chr5A.!!$F1 3535
1 TraesCS5A01G549800 chr4B 663902021 663903463 1442 False 1718.000000 1718 88.166000 1028 2470 1 chr4B.!!$F1 1442
2 TraesCS5A01G549800 chr4B 664677722 664680498 2776 False 849.333333 1701 82.475667 1028 3531 3 chr4B.!!$F2 2503
3 TraesCS5A01G549800 chr4D 507000153 507003502 3349 False 745.250000 1528 89.975500 1 3536 4 chr4D.!!$F2 3535
4 TraesCS5A01G549800 chr2B 742171262 742172683 1421 True 1062.000000 1062 80.266000 1050 2470 1 chr2B.!!$R2 1420
5 TraesCS5A01G549800 chr2D 608576927 608578348 1421 True 1051.000000 1051 80.126000 1050 2470 1 chr2D.!!$R1 1420
6 TraesCS5A01G549800 chr7A 563245343 563246772 1429 True 1026.000000 1026 79.722000 1029 2461 1 chr7A.!!$R4 1432
7 TraesCS5A01G549800 chr7A 29007770 29009191 1421 True 952.000000 952 78.881000 1050 2470 1 chr7A.!!$R3 1420
8 TraesCS5A01G549800 chr7A 28807453 28808875 1422 True 926.000000 926 78.531000 1050 2470 1 chr7A.!!$R1 1420
9 TraesCS5A01G549800 chr7A 28844254 28845676 1422 True 909.000000 909 78.322000 1050 2470 1 chr7A.!!$R2 1420
10 TraesCS5A01G549800 chr7B 525597021 525598433 1412 True 987.000000 987 79.337000 1049 2461 1 chr7B.!!$R1 1412
11 TraesCS5A01G549800 chrUn 313531902 313533320 1418 True 922.000000 922 78.531000 1050 2470 1 chrUn.!!$R2 1420

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 1360 0.034186 ATTCGCCCTGCCAATCAAGA 60.034 50.0 0.00 0.0 0.0 3.02 F
943 1557 0.182061 TCCATCTCTTGCTGCATCCC 59.818 55.0 1.84 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 2837 0.107945 GGACAAGCTCCTCGAATGCT 60.108 55.0 0.00 1.32 38.87 3.79 R
2828 3748 1.006086 TCAAATAGTGCACGCCGATG 58.994 50.0 12.01 8.61 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.006598 CGAGAAGTCGTCGTACTACGG 60.007 57.143 18.47 2.20 43.05 4.02
43 44 3.490890 GTCGTCGTACTACGGCCT 58.509 61.111 18.47 0.00 44.43 5.19
49 50 1.534595 GTCGTACTACGGCCTCATAGG 59.465 57.143 8.71 0.00 40.90 2.57
52 53 2.031333 CGTACTACGGCCTCATAGGAAC 60.031 54.545 0.00 2.79 36.14 3.62
54 55 2.463752 ACTACGGCCTCATAGGAACAA 58.536 47.619 0.00 0.00 37.67 2.83
55 56 3.039011 ACTACGGCCTCATAGGAACAAT 58.961 45.455 0.00 0.00 37.67 2.71
59 60 2.590821 GGCCTCATAGGAACAATGCAT 58.409 47.619 0.00 0.00 37.67 3.96
62 63 3.825014 GCCTCATAGGAACAATGCATCAT 59.175 43.478 0.00 0.00 37.67 2.45
67 68 8.960351 CCTCATAGGAACAATGCATCATAGCAG 61.960 44.444 0.00 0.00 42.73 4.24
76 77 0.531311 CATCATAGCAGCAGCCGTCA 60.531 55.000 0.00 0.00 43.56 4.35
77 78 0.395686 ATCATAGCAGCAGCCGTCAT 59.604 50.000 0.00 0.00 43.56 3.06
95 96 4.970611 CGTCATCGATGAAGAAAGTCGTAT 59.029 41.667 30.11 0.00 38.33 3.06
112 113 6.750148 AGTCGTATATCAGAAGGATCAAACC 58.250 40.000 0.00 0.00 37.44 3.27
123 124 5.998363 AGAAGGATCAAACCTGTAAACACTC 59.002 40.000 0.00 0.00 40.49 3.51
124 125 5.304686 AGGATCAAACCTGTAAACACTCA 57.695 39.130 0.00 0.00 39.01 3.41
125 126 5.690865 AGGATCAAACCTGTAAACACTCAA 58.309 37.500 0.00 0.00 39.01 3.02
126 127 6.126409 AGGATCAAACCTGTAAACACTCAAA 58.874 36.000 0.00 0.00 39.01 2.69
127 128 6.039382 AGGATCAAACCTGTAAACACTCAAAC 59.961 38.462 0.00 0.00 39.01 2.93
128 129 6.183360 GGATCAAACCTGTAAACACTCAAACA 60.183 38.462 0.00 0.00 0.00 2.83
129 130 6.189677 TCAAACCTGTAAACACTCAAACAG 57.810 37.500 0.00 0.00 39.22 3.16
130 131 5.941058 TCAAACCTGTAAACACTCAAACAGA 59.059 36.000 3.00 0.00 41.47 3.41
176 177 0.977627 ATCCATCGAGACCAGCACCA 60.978 55.000 0.00 0.00 0.00 4.17
178 179 1.021390 CCATCGAGACCAGCACCAAC 61.021 60.000 0.00 0.00 0.00 3.77
180 181 1.480212 ATCGAGACCAGCACCAACCA 61.480 55.000 0.00 0.00 0.00 3.67
189 190 2.569354 GCACCAACCAAATCCCGCA 61.569 57.895 0.00 0.00 0.00 5.69
200 201 1.672854 AATCCCGCAAGATCCGACGA 61.673 55.000 0.00 0.00 43.02 4.20
211 212 0.526662 ATCCGACGAAGACACACCTC 59.473 55.000 0.00 0.00 0.00 3.85
216 217 0.104304 ACGAAGACACACCTCCACAC 59.896 55.000 0.00 0.00 0.00 3.82
223 224 3.314331 CACCTCCACACGCCCTCT 61.314 66.667 0.00 0.00 0.00 3.69
224 225 3.314331 ACCTCCACACGCCCTCTG 61.314 66.667 0.00 0.00 0.00 3.35
230 231 1.663379 CCACACGCCCTCTGACGATA 61.663 60.000 0.00 0.00 0.00 2.92
234 235 1.880675 CACGCCCTCTGACGATACTAT 59.119 52.381 0.00 0.00 0.00 2.12
236 237 3.690139 CACGCCCTCTGACGATACTATAT 59.310 47.826 0.00 0.00 0.00 0.86
244 245 7.417229 CCCTCTGACGATACTATATGCATCATT 60.417 40.741 0.19 0.00 0.00 2.57
245 246 8.624776 CCTCTGACGATACTATATGCATCATTA 58.375 37.037 0.19 0.00 0.00 1.90
249 250 8.406297 TGACGATACTATATGCATCATTAGGAC 58.594 37.037 0.19 0.00 0.00 3.85
256 257 1.072173 TGCATCATTAGGACGGGGATG 59.928 52.381 0.00 0.00 38.64 3.51
259 260 1.717032 TCATTAGGACGGGGATGGAG 58.283 55.000 0.00 0.00 0.00 3.86
264 265 0.561184 AGGACGGGGATGGAGTATGA 59.439 55.000 0.00 0.00 0.00 2.15
265 266 1.062428 AGGACGGGGATGGAGTATGAA 60.062 52.381 0.00 0.00 0.00 2.57
306 307 1.818959 GCATTGCCACCACCACACAT 61.819 55.000 0.00 0.00 0.00 3.21
316 317 0.895100 CACCACACATCCCCAACCAG 60.895 60.000 0.00 0.00 0.00 4.00
322 323 1.000896 CATCCCCAACCAGGACACC 60.001 63.158 0.00 0.00 41.22 4.16
331 332 0.251832 ACCAGGACACCGAGTCTCAT 60.252 55.000 0.00 0.00 46.72 2.90
343 344 3.436496 CGAGTCTCATAAGAACGGGAAC 58.564 50.000 0.00 0.00 33.13 3.62
411 419 2.611225 TTCTTGCAAAAATGGGCGTT 57.389 40.000 0.00 0.00 0.00 4.84
418 427 2.555199 CAAAAATGGGCGTTTTGGTGA 58.445 42.857 10.23 0.00 40.63 4.02
438 447 8.506168 TGGTGAAAAATCAAGTCATATACTCC 57.494 34.615 0.00 0.00 37.50 3.85
439 448 7.556275 TGGTGAAAAATCAAGTCATATACTCCC 59.444 37.037 0.00 0.00 37.50 4.30
440 449 7.775561 GGTGAAAAATCAAGTCATATACTCCCT 59.224 37.037 0.00 0.00 37.50 4.20
441 450 8.831550 GTGAAAAATCAAGTCATATACTCCCTC 58.168 37.037 0.00 0.00 37.50 4.30
442 451 7.993183 TGAAAAATCAAGTCATATACTCCCTCC 59.007 37.037 0.00 0.00 37.50 4.30
443 452 7.451731 AAAATCAAGTCATATACTCCCTCCA 57.548 36.000 0.00 0.00 37.50 3.86
444 453 7.639062 AAATCAAGTCATATACTCCCTCCAT 57.361 36.000 0.00 0.00 37.50 3.41
445 454 7.639062 AATCAAGTCATATACTCCCTCCATT 57.361 36.000 0.00 0.00 37.50 3.16
446 455 6.672266 TCAAGTCATATACTCCCTCCATTC 57.328 41.667 0.00 0.00 37.50 2.67
447 456 5.544176 TCAAGTCATATACTCCCTCCATTCC 59.456 44.000 0.00 0.00 37.50 3.01
448 457 5.093236 AGTCATATACTCCCTCCATTCCA 57.907 43.478 0.00 0.00 30.33 3.53
449 458 5.476983 AGTCATATACTCCCTCCATTCCAA 58.523 41.667 0.00 0.00 30.33 3.53
450 459 5.911178 AGTCATATACTCCCTCCATTCCAAA 59.089 40.000 0.00 0.00 30.33 3.28
451 460 6.389869 AGTCATATACTCCCTCCATTCCAAAA 59.610 38.462 0.00 0.00 30.33 2.44
452 461 7.074237 AGTCATATACTCCCTCCATTCCAAAAT 59.926 37.037 0.00 0.00 30.33 1.82
453 462 8.383175 GTCATATACTCCCTCCATTCCAAAATA 58.617 37.037 0.00 0.00 0.00 1.40
454 463 9.127560 TCATATACTCCCTCCATTCCAAAATAT 57.872 33.333 0.00 0.00 0.00 1.28
457 466 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
458 467 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
459 468 6.389869 ACTCCCTCCATTCCAAAATATAGTGA 59.610 38.462 0.00 0.00 0.00 3.41
460 469 6.841601 TCCCTCCATTCCAAAATATAGTGAG 58.158 40.000 0.00 0.00 0.00 3.51
461 470 5.474876 CCCTCCATTCCAAAATATAGTGAGC 59.525 44.000 0.00 0.00 0.00 4.26
462 471 5.474876 CCTCCATTCCAAAATATAGTGAGCC 59.525 44.000 0.00 0.00 0.00 4.70
463 472 5.385198 TCCATTCCAAAATATAGTGAGCCC 58.615 41.667 0.00 0.00 0.00 5.19
464 473 5.103728 TCCATTCCAAAATATAGTGAGCCCA 60.104 40.000 0.00 0.00 0.00 5.36
465 474 5.010012 CCATTCCAAAATATAGTGAGCCCAC 59.990 44.000 0.00 0.00 43.50 4.61
476 485 2.361610 AGCCCACGCTTCCCAATG 60.362 61.111 0.00 0.00 45.55 2.82
477 486 2.676471 GCCCACGCTTCCCAATGT 60.676 61.111 0.00 0.00 0.00 2.71
478 487 2.275380 GCCCACGCTTCCCAATGTT 61.275 57.895 0.00 0.00 0.00 2.71
479 488 1.883021 CCCACGCTTCCCAATGTTC 59.117 57.895 0.00 0.00 0.00 3.18
480 489 0.893270 CCCACGCTTCCCAATGTTCA 60.893 55.000 0.00 0.00 0.00 3.18
481 490 0.958091 CCACGCTTCCCAATGTTCAA 59.042 50.000 0.00 0.00 0.00 2.69
482 491 1.335872 CCACGCTTCCCAATGTTCAAC 60.336 52.381 0.00 0.00 0.00 3.18
483 492 1.608590 CACGCTTCCCAATGTTCAACT 59.391 47.619 0.00 0.00 0.00 3.16
484 493 2.034558 CACGCTTCCCAATGTTCAACTT 59.965 45.455 0.00 0.00 0.00 2.66
485 494 2.693074 ACGCTTCCCAATGTTCAACTTT 59.307 40.909 0.00 0.00 0.00 2.66
486 495 3.052036 CGCTTCCCAATGTTCAACTTTG 58.948 45.455 8.82 8.82 34.26 2.77
487 496 3.243367 CGCTTCCCAATGTTCAACTTTGA 60.243 43.478 15.93 0.00 35.88 2.69
488 497 4.559300 CGCTTCCCAATGTTCAACTTTGAT 60.559 41.667 15.93 0.00 35.88 2.57
489 498 4.925646 GCTTCCCAATGTTCAACTTTGATC 59.074 41.667 15.93 0.00 35.88 2.92
490 499 5.509501 GCTTCCCAATGTTCAACTTTGATCA 60.510 40.000 15.93 5.43 40.12 2.92
491 500 6.669125 TTCCCAATGTTCAACTTTGATCAT 57.331 33.333 15.93 8.96 44.92 2.45
492 501 7.577426 GCTTCCCAATGTTCAACTTTGATCATA 60.577 37.037 15.93 0.00 43.24 2.15
493 502 7.773489 TCCCAATGTTCAACTTTGATCATAA 57.227 32.000 15.93 0.00 43.24 1.90
494 503 8.187913 TCCCAATGTTCAACTTTGATCATAAA 57.812 30.769 15.93 0.00 43.24 1.40
495 504 8.814931 TCCCAATGTTCAACTTTGATCATAAAT 58.185 29.630 15.93 0.07 43.24 1.40
496 505 9.439500 CCCAATGTTCAACTTTGATCATAAATT 57.561 29.630 15.93 0.45 43.24 1.82
510 519 8.519799 TGATCATAAATTTAACCAAGGAGACC 57.480 34.615 1.21 0.00 0.00 3.85
511 520 8.112822 TGATCATAAATTTAACCAAGGAGACCA 58.887 33.333 1.21 0.00 0.00 4.02
512 521 8.893563 ATCATAAATTTAACCAAGGAGACCAA 57.106 30.769 1.21 0.00 0.00 3.67
513 522 8.117813 TCATAAATTTAACCAAGGAGACCAAC 57.882 34.615 1.21 0.00 0.00 3.77
514 523 7.947890 TCATAAATTTAACCAAGGAGACCAACT 59.052 33.333 1.21 0.00 0.00 3.16
515 524 6.405278 AAATTTAACCAAGGAGACCAACTG 57.595 37.500 0.00 0.00 0.00 3.16
516 525 2.561478 TAACCAAGGAGACCAACTGC 57.439 50.000 0.00 0.00 37.22 4.40
517 526 0.535102 AACCAAGGAGACCAACTGCG 60.535 55.000 0.00 0.00 41.86 5.18
518 527 1.672356 CCAAGGAGACCAACTGCGG 60.672 63.158 0.00 0.00 41.86 5.69
519 528 2.032681 AAGGAGACCAACTGCGGC 59.967 61.111 0.00 0.00 41.86 6.53
520 529 3.883744 AAGGAGACCAACTGCGGCG 62.884 63.158 0.51 0.51 41.86 6.46
522 531 4.373116 GAGACCAACTGCGGCGGA 62.373 66.667 17.15 4.40 0.00 5.54
523 532 4.379243 AGACCAACTGCGGCGGAG 62.379 66.667 27.12 27.12 0.00 4.63
524 533 4.373116 GACCAACTGCGGCGGAGA 62.373 66.667 34.83 0.00 0.00 3.71
525 534 3.876589 GACCAACTGCGGCGGAGAA 62.877 63.158 34.83 0.00 0.00 2.87
526 535 2.668212 CCAACTGCGGCGGAGAAA 60.668 61.111 34.83 0.00 0.00 2.52
527 536 2.258013 CCAACTGCGGCGGAGAAAA 61.258 57.895 34.83 0.00 0.00 2.29
528 537 1.652012 CAACTGCGGCGGAGAAAAA 59.348 52.632 34.83 0.00 0.00 1.94
569 578 9.450807 AAACTTCTTTCGAATACAAAATCACTG 57.549 29.630 0.00 0.00 0.00 3.66
570 579 8.378172 ACTTCTTTCGAATACAAAATCACTGA 57.622 30.769 0.00 0.00 0.00 3.41
571 580 9.003658 ACTTCTTTCGAATACAAAATCACTGAT 57.996 29.630 0.00 0.00 0.00 2.90
586 595 9.822185 AAAATCACTGATATAATTTTTGCTCCC 57.178 29.630 0.00 0.00 29.42 4.30
587 596 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
588 597 5.530915 TCACTGATATAATTTTTGCTCCCGG 59.469 40.000 0.00 0.00 0.00 5.73
589 598 4.278419 ACTGATATAATTTTTGCTCCCGGC 59.722 41.667 0.00 0.00 42.22 6.13
590 599 3.252215 TGATATAATTTTTGCTCCCGGCG 59.748 43.478 0.00 0.00 45.43 6.46
591 600 0.102300 ATAATTTTTGCTCCCGGCGC 59.898 50.000 0.00 0.00 45.43 6.53
592 601 1.244697 TAATTTTTGCTCCCGGCGCA 61.245 50.000 10.83 12.01 45.43 6.09
593 602 2.093537 AATTTTTGCTCCCGGCGCAA 62.094 50.000 21.03 21.03 44.83 4.85
594 603 1.887344 ATTTTTGCTCCCGGCGCAAT 61.887 50.000 24.09 11.37 45.67 3.56
595 604 2.093537 TTTTTGCTCCCGGCGCAATT 62.094 50.000 24.09 0.00 45.67 2.32
596 605 2.762006 TTTTGCTCCCGGCGCAATTG 62.762 55.000 24.09 0.00 45.67 2.32
597 606 4.713735 TGCTCCCGGCGCAATTGA 62.714 61.111 10.83 0.00 45.43 2.57
598 607 3.211963 GCTCCCGGCGCAATTGAT 61.212 61.111 10.83 0.00 0.00 2.57
599 608 3.025619 CTCCCGGCGCAATTGATC 58.974 61.111 10.83 0.00 0.00 2.92
600 609 1.524621 CTCCCGGCGCAATTGATCT 60.525 57.895 10.83 0.00 0.00 2.75
601 610 1.077787 TCCCGGCGCAATTGATCTT 60.078 52.632 10.83 0.00 0.00 2.40
602 611 1.064621 CCCGGCGCAATTGATCTTG 59.935 57.895 10.83 0.00 0.00 3.02
603 612 1.064621 CCGGCGCAATTGATCTTGG 59.935 57.895 10.83 0.00 0.00 3.61
604 613 1.656818 CCGGCGCAATTGATCTTGGT 61.657 55.000 10.83 0.00 0.00 3.67
605 614 1.013596 CGGCGCAATTGATCTTGGTA 58.986 50.000 10.83 0.00 0.00 3.25
606 615 1.003545 CGGCGCAATTGATCTTGGTAG 60.004 52.381 10.83 0.00 0.00 3.18
607 616 2.017049 GGCGCAATTGATCTTGGTAGT 58.983 47.619 10.83 0.00 0.00 2.73
608 617 2.423538 GGCGCAATTGATCTTGGTAGTT 59.576 45.455 10.83 0.00 0.00 2.24
609 618 3.625764 GGCGCAATTGATCTTGGTAGTTA 59.374 43.478 10.83 0.00 0.00 2.24
610 619 4.095782 GGCGCAATTGATCTTGGTAGTTAA 59.904 41.667 10.83 0.00 0.00 2.01
611 620 5.392595 GGCGCAATTGATCTTGGTAGTTAAA 60.393 40.000 10.83 0.00 0.00 1.52
612 621 6.265577 GCGCAATTGATCTTGGTAGTTAAAT 58.734 36.000 10.34 0.00 0.00 1.40
613 622 6.751888 GCGCAATTGATCTTGGTAGTTAAATT 59.248 34.615 10.34 0.00 0.00 1.82
614 623 7.275560 GCGCAATTGATCTTGGTAGTTAAATTT 59.724 33.333 10.34 0.00 0.00 1.82
615 624 9.781834 CGCAATTGATCTTGGTAGTTAAATTTA 57.218 29.630 10.34 0.00 0.00 1.40
619 628 8.851541 TTGATCTTGGTAGTTAAATTTACGGT 57.148 30.769 0.00 0.00 0.00 4.83
620 629 8.483307 TGATCTTGGTAGTTAAATTTACGGTC 57.517 34.615 0.00 0.00 0.00 4.79
621 630 8.095792 TGATCTTGGTAGTTAAATTTACGGTCA 58.904 33.333 0.00 0.00 0.00 4.02
622 631 8.851541 ATCTTGGTAGTTAAATTTACGGTCAA 57.148 30.769 0.00 0.00 0.00 3.18
623 632 8.674263 TCTTGGTAGTTAAATTTACGGTCAAA 57.326 30.769 0.00 0.00 0.00 2.69
624 633 8.776470 TCTTGGTAGTTAAATTTACGGTCAAAG 58.224 33.333 0.00 0.00 0.00 2.77
625 634 8.449251 TTGGTAGTTAAATTTACGGTCAAAGT 57.551 30.769 0.00 0.00 0.00 2.66
626 635 8.449251 TGGTAGTTAAATTTACGGTCAAAGTT 57.551 30.769 0.00 0.00 31.36 2.66
627 636 8.344098 TGGTAGTTAAATTTACGGTCAAAGTTG 58.656 33.333 0.00 0.00 29.44 3.16
628 637 8.558700 GGTAGTTAAATTTACGGTCAAAGTTGA 58.441 33.333 0.00 0.00 34.20 3.18
629 638 9.934190 GTAGTTAAATTTACGGTCAAAGTTGAA 57.066 29.630 0.00 0.00 39.21 2.69
631 640 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
632 641 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
633 642 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
634 643 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
635 644 0.041312 CGGTCAAAGTTGAAGCACGG 60.041 55.000 0.00 0.00 39.21 4.94
636 645 1.305201 GGTCAAAGTTGAAGCACGGA 58.695 50.000 0.00 0.00 39.21 4.69
637 646 1.264288 GGTCAAAGTTGAAGCACGGAG 59.736 52.381 0.00 0.00 39.21 4.63
638 647 2.210116 GTCAAAGTTGAAGCACGGAGA 58.790 47.619 0.00 0.00 39.21 3.71
639 648 2.808543 GTCAAAGTTGAAGCACGGAGAT 59.191 45.455 0.00 0.00 39.21 2.75
640 649 3.994392 GTCAAAGTTGAAGCACGGAGATA 59.006 43.478 0.00 0.00 39.21 1.98
641 650 4.092091 GTCAAAGTTGAAGCACGGAGATAG 59.908 45.833 0.00 0.00 39.21 2.08
642 651 4.021456 TCAAAGTTGAAGCACGGAGATAGA 60.021 41.667 0.00 0.00 33.55 1.98
643 652 3.791973 AGTTGAAGCACGGAGATAGAG 57.208 47.619 0.00 0.00 0.00 2.43
644 653 2.428890 AGTTGAAGCACGGAGATAGAGG 59.571 50.000 0.00 0.00 0.00 3.69
645 654 2.427453 GTTGAAGCACGGAGATAGAGGA 59.573 50.000 0.00 0.00 0.00 3.71
646 655 2.735151 TGAAGCACGGAGATAGAGGAA 58.265 47.619 0.00 0.00 0.00 3.36
647 656 2.690497 TGAAGCACGGAGATAGAGGAAG 59.310 50.000 0.00 0.00 0.00 3.46
648 657 1.036707 AGCACGGAGATAGAGGAAGC 58.963 55.000 0.00 0.00 0.00 3.86
649 658 0.747255 GCACGGAGATAGAGGAAGCA 59.253 55.000 0.00 0.00 0.00 3.91
650 659 1.537135 GCACGGAGATAGAGGAAGCAC 60.537 57.143 0.00 0.00 0.00 4.40
651 660 2.028130 CACGGAGATAGAGGAAGCACT 58.972 52.381 0.00 0.00 0.00 4.40
652 661 3.215151 CACGGAGATAGAGGAAGCACTA 58.785 50.000 0.00 0.00 0.00 2.74
653 662 3.003897 CACGGAGATAGAGGAAGCACTAC 59.996 52.174 0.00 0.00 0.00 2.73
654 663 3.215151 CGGAGATAGAGGAAGCACTACA 58.785 50.000 0.00 0.00 0.00 2.74
655 664 3.823873 CGGAGATAGAGGAAGCACTACAT 59.176 47.826 0.00 0.00 0.00 2.29
656 665 4.279671 CGGAGATAGAGGAAGCACTACATT 59.720 45.833 0.00 0.00 0.00 2.71
657 666 5.473846 CGGAGATAGAGGAAGCACTACATTA 59.526 44.000 0.00 0.00 0.00 1.90
658 667 6.151985 CGGAGATAGAGGAAGCACTACATTAT 59.848 42.308 0.00 0.00 0.00 1.28
659 668 7.319646 GGAGATAGAGGAAGCACTACATTATG 58.680 42.308 0.00 0.00 0.00 1.90
660 669 7.177568 GGAGATAGAGGAAGCACTACATTATGA 59.822 40.741 0.00 0.00 0.00 2.15
661 670 8.484214 AGATAGAGGAAGCACTACATTATGAA 57.516 34.615 0.00 0.00 0.00 2.57
662 671 8.928448 AGATAGAGGAAGCACTACATTATGAAA 58.072 33.333 0.00 0.00 0.00 2.69
663 672 9.717942 GATAGAGGAAGCACTACATTATGAAAT 57.282 33.333 0.00 0.00 0.00 2.17
664 673 7.798596 AGAGGAAGCACTACATTATGAAATG 57.201 36.000 0.00 0.00 46.66 2.32
665 674 7.568349 AGAGGAAGCACTACATTATGAAATGA 58.432 34.615 0.00 0.00 44.50 2.57
666 675 8.049117 AGAGGAAGCACTACATTATGAAATGAA 58.951 33.333 0.00 0.00 44.50 2.57
667 676 8.218338 AGGAAGCACTACATTATGAAATGAAG 57.782 34.615 0.00 0.00 44.50 3.02
668 677 7.284034 AGGAAGCACTACATTATGAAATGAAGG 59.716 37.037 0.00 0.00 44.50 3.46
669 678 6.949352 AGCACTACATTATGAAATGAAGGG 57.051 37.500 0.00 0.00 44.50 3.95
670 679 6.662755 AGCACTACATTATGAAATGAAGGGA 58.337 36.000 0.00 0.00 44.50 4.20
671 680 6.769822 AGCACTACATTATGAAATGAAGGGAG 59.230 38.462 0.00 0.00 44.50 4.30
672 681 6.543831 GCACTACATTATGAAATGAAGGGAGT 59.456 38.462 0.00 0.00 44.50 3.85
673 682 7.715249 GCACTACATTATGAAATGAAGGGAGTA 59.285 37.037 0.00 0.00 44.50 2.59
690 699 7.986553 AGGGAGTATGAGATATATTCAAGGG 57.013 40.000 0.00 0.00 0.00 3.95
696 705 4.489737 TGAGATATATTCAAGGGGACGGT 58.510 43.478 0.00 0.00 0.00 4.83
697 706 4.527038 TGAGATATATTCAAGGGGACGGTC 59.473 45.833 0.00 0.00 0.00 4.79
698 707 4.489737 AGATATATTCAAGGGGACGGTCA 58.510 43.478 10.76 0.00 0.00 4.02
699 708 5.094387 AGATATATTCAAGGGGACGGTCAT 58.906 41.667 10.76 0.00 0.00 3.06
710 719 4.601857 AGGGGACGGTCATTTTCCATATAT 59.398 41.667 10.76 0.00 0.00 0.86
711 720 5.788533 AGGGGACGGTCATTTTCCATATATA 59.211 40.000 10.76 0.00 0.00 0.86
721 730 8.177663 GTCATTTTCCATATATAATCTGGTGCG 58.822 37.037 1.66 0.00 0.00 5.34
797 806 5.975138 GTCACAAAGACGCAATATTTCAC 57.025 39.130 0.00 0.00 37.53 3.18
798 807 4.851558 GTCACAAAGACGCAATATTTCACC 59.148 41.667 0.00 0.00 37.53 4.02
799 808 4.083003 TCACAAAGACGCAATATTTCACCC 60.083 41.667 0.00 0.00 0.00 4.61
800 809 3.119990 ACAAAGACGCAATATTTCACCCG 60.120 43.478 0.00 0.00 0.00 5.28
803 812 1.329599 GACGCAATATTTCACCCGGTC 59.670 52.381 0.00 0.00 0.00 4.79
804 813 0.303493 CGCAATATTTCACCCGGTCG 59.697 55.000 0.00 0.00 0.00 4.79
805 814 0.661020 GCAATATTTCACCCGGTCGG 59.339 55.000 0.00 1.86 37.81 4.79
806 815 0.661020 CAATATTTCACCCGGTCGGC 59.339 55.000 0.00 0.00 33.26 5.54
807 816 0.464916 AATATTTCACCCGGTCGGCC 60.465 55.000 0.00 0.00 33.26 6.13
808 817 1.628238 ATATTTCACCCGGTCGGCCA 61.628 55.000 6.96 0.00 33.26 5.36
809 818 2.246761 TATTTCACCCGGTCGGCCAG 62.247 60.000 6.96 0.00 33.26 4.85
822 1350 3.818787 GCCAGTGCATTCGCCCTG 61.819 66.667 0.00 0.00 42.66 4.45
831 1359 0.101759 CATTCGCCCTGCCAATCAAG 59.898 55.000 0.00 0.00 0.00 3.02
832 1360 0.034186 ATTCGCCCTGCCAATCAAGA 60.034 50.000 0.00 0.00 0.00 3.02
834 1362 1.078214 CGCCCTGCCAATCAAGAGA 60.078 57.895 0.00 0.00 0.00 3.10
835 1363 1.094073 CGCCCTGCCAATCAAGAGAG 61.094 60.000 0.00 0.00 0.00 3.20
836 1364 0.254178 GCCCTGCCAATCAAGAGAGA 59.746 55.000 0.00 0.00 0.00 3.10
837 1365 2.016096 GCCCTGCCAATCAAGAGAGAC 61.016 57.143 0.00 0.00 0.00 3.36
838 1366 1.649664 CCTGCCAATCAAGAGAGACG 58.350 55.000 0.00 0.00 0.00 4.18
839 1367 1.205655 CCTGCCAATCAAGAGAGACGA 59.794 52.381 0.00 0.00 0.00 4.20
841 1369 1.618343 TGCCAATCAAGAGAGACGACA 59.382 47.619 0.00 0.00 0.00 4.35
842 1370 2.234661 TGCCAATCAAGAGAGACGACAT 59.765 45.455 0.00 0.00 0.00 3.06
843 1371 3.447229 TGCCAATCAAGAGAGACGACATA 59.553 43.478 0.00 0.00 0.00 2.29
844 1372 4.100035 TGCCAATCAAGAGAGACGACATAT 59.900 41.667 0.00 0.00 0.00 1.78
845 1373 4.447054 GCCAATCAAGAGAGACGACATATG 59.553 45.833 0.00 0.00 0.00 1.78
846 1374 5.595885 CCAATCAAGAGAGACGACATATGT 58.404 41.667 8.43 8.43 0.00 2.29
847 1375 6.735968 GCCAATCAAGAGAGACGACATATGTA 60.736 42.308 8.71 0.00 0.00 2.29
848 1376 6.860539 CCAATCAAGAGAGACGACATATGTAG 59.139 42.308 8.71 11.57 0.00 2.74
850 1378 6.852858 TCAAGAGAGACGACATATGTAGAG 57.147 41.667 21.06 12.28 0.00 2.43
852 1380 4.069304 AGAGAGACGACATATGTAGAGGC 58.931 47.826 21.06 12.15 0.00 4.70
853 1381 4.069304 GAGAGACGACATATGTAGAGGCT 58.931 47.826 21.06 16.34 0.00 4.58
854 1382 4.465886 AGAGACGACATATGTAGAGGCTT 58.534 43.478 21.06 0.00 0.00 4.35
855 1383 4.517453 AGAGACGACATATGTAGAGGCTTC 59.483 45.833 21.06 8.76 0.00 3.86
856 1384 3.570550 AGACGACATATGTAGAGGCTTCC 59.429 47.826 21.06 0.00 0.00 3.46
857 1385 2.293677 ACGACATATGTAGAGGCTTCCG 59.706 50.000 21.06 13.24 0.00 4.30
858 1386 2.293677 CGACATATGTAGAGGCTTCCGT 59.706 50.000 8.71 0.00 0.00 4.69
859 1387 3.609644 CGACATATGTAGAGGCTTCCGTC 60.610 52.174 8.71 0.00 0.00 4.79
860 1388 2.628657 ACATATGTAGAGGCTTCCGTCC 59.371 50.000 6.56 0.00 0.00 4.79
861 1389 1.700955 TATGTAGAGGCTTCCGTCCC 58.299 55.000 0.00 0.00 0.00 4.46
875 1459 2.036733 TCCGTCCCATATAAAGCCTTCG 59.963 50.000 0.00 0.00 0.00 3.79
883 1467 1.299541 ATAAAGCCTTCGCACATCCG 58.700 50.000 0.00 0.00 37.52 4.18
916 1500 2.296190 ACATCACAGAGCACAAGACGTA 59.704 45.455 0.00 0.00 0.00 3.57
917 1501 2.417339 TCACAGAGCACAAGACGTAC 57.583 50.000 0.00 0.00 0.00 3.67
918 1502 1.000607 TCACAGAGCACAAGACGTACC 60.001 52.381 0.00 0.00 0.00 3.34
919 1503 1.037493 ACAGAGCACAAGACGTACCA 58.963 50.000 0.00 0.00 0.00 3.25
920 1504 1.411246 ACAGAGCACAAGACGTACCAA 59.589 47.619 0.00 0.00 0.00 3.67
921 1505 1.792949 CAGAGCACAAGACGTACCAAC 59.207 52.381 0.00 0.00 0.00 3.77
923 1507 0.466543 AGCACAAGACGTACCAACCA 59.533 50.000 0.00 0.00 0.00 3.67
927 1511 1.695242 ACAAGACGTACCAACCATCCA 59.305 47.619 0.00 0.00 0.00 3.41
928 1512 2.304761 ACAAGACGTACCAACCATCCAT 59.695 45.455 0.00 0.00 0.00 3.41
930 1514 2.467880 AGACGTACCAACCATCCATCT 58.532 47.619 0.00 0.00 0.00 2.90
939 1553 0.622136 ACCATCCATCTCTTGCTGCA 59.378 50.000 0.00 0.00 0.00 4.41
943 1557 0.182061 TCCATCTCTTGCTGCATCCC 59.818 55.000 1.84 0.00 0.00 3.85
972 1586 2.027897 ACGCGCGACAAGGTAACA 59.972 55.556 39.36 0.00 41.41 2.41
977 1591 1.003223 GCGCGACAAGGTAACAAACTT 60.003 47.619 12.10 0.00 41.41 2.66
982 1596 6.592166 CGCGACAAGGTAACAAACTTAATTA 58.408 36.000 0.00 0.00 41.41 1.40
1009 1623 3.898517 TCACTAAGACGATGGATAGCG 57.101 47.619 0.00 0.00 42.36 4.26
1020 1634 1.705256 TGGATAGCGTCGACACAAAC 58.295 50.000 17.16 3.56 0.00 2.93
1082 1696 3.481903 AGAAGACGTGCGCGCATG 61.482 61.111 42.73 42.73 42.83 4.06
1121 1735 5.520632 CGACTTCATCACGGATTACTACAT 58.479 41.667 0.00 0.00 0.00 2.29
1174 1788 1.001248 AAGCCAGGCTACCTACGGA 59.999 57.895 16.56 0.00 38.25 4.69
1266 1880 2.839098 GTCCCCGGGATGATGCAT 59.161 61.111 26.32 0.00 32.73 3.96
1274 1888 1.818913 CGGGATGATGCATTGGGCTAA 60.819 52.381 0.00 0.00 45.15 3.09
1335 1949 3.550431 GCCATCGCAGGGGAGCTA 61.550 66.667 0.00 0.00 34.03 3.32
1359 1973 2.358125 TCGGCCATGAACACCGTG 60.358 61.111 2.24 0.00 46.92 4.94
1413 2027 1.812922 GATGGAGGTGCTCGTGCTG 60.813 63.158 11.19 0.00 40.48 4.41
1444 2058 4.079850 AGCTCCTGCGACTGCCAG 62.080 66.667 0.00 0.00 45.42 4.85
1530 2144 2.265739 GAGGCCATGCTCGTCACA 59.734 61.111 5.01 0.00 0.00 3.58
1533 2147 2.393768 GGCCATGCTCGTCACACTG 61.394 63.158 0.00 0.00 0.00 3.66
1542 2156 2.899838 GTCACACTGGTTGCCGCA 60.900 61.111 0.00 0.00 0.00 5.69
1582 2196 3.443045 GTGGCTCCAATGGCGTGG 61.443 66.667 0.00 0.65 40.33 4.94
1583 2197 3.645660 TGGCTCCAATGGCGTGGA 61.646 61.111 9.18 9.18 45.72 4.02
1586 2200 2.819595 CTCCAATGGCGTGGACCG 60.820 66.667 5.66 0.00 42.97 4.79
1662 2276 3.254024 ATGCCGCCTCACCGACTTT 62.254 57.895 0.00 0.00 0.00 2.66
1746 2360 2.612672 CAAGTTGCTCGAGATCATGCAT 59.387 45.455 18.75 0.00 35.27 3.96
1749 2363 1.219522 TGCTCGAGATCATGCATGCG 61.220 55.000 22.25 18.46 0.00 4.73
1755 2369 1.945394 GAGATCATGCATGCGGACTTT 59.055 47.619 22.25 2.87 0.00 2.66
1756 2370 1.945394 AGATCATGCATGCGGACTTTC 59.055 47.619 22.25 8.00 0.00 2.62
1757 2371 0.659427 ATCATGCATGCGGACTTTCG 59.341 50.000 22.25 0.00 0.00 3.46
1762 2376 2.031919 ATGCGGACTTTCGTGCCA 59.968 55.556 0.00 0.00 0.00 4.92
1764 2378 4.090057 GCGGACTTTCGTGCCAGC 62.090 66.667 0.00 0.00 0.00 4.85
1797 2411 1.968017 CATCTGCGCCACTGTTGGT 60.968 57.895 4.18 0.00 45.98 3.67
1806 2420 0.942410 CCACTGTTGGTACCACGTCG 60.942 60.000 16.04 6.11 38.23 5.12
1959 2573 1.209019 GAGCATGTGGACTCCATCAGT 59.791 52.381 0.00 0.00 38.45 3.41
2048 2662 0.452184 CTCACCGACGCACTACAGAT 59.548 55.000 0.00 0.00 0.00 2.90
2178 2792 4.082523 ATGCGCACCTACGGCACT 62.083 61.111 14.90 0.00 39.84 4.40
2179 2793 2.622903 GATGCGCACCTACGGCACTA 62.623 60.000 14.90 0.00 39.84 2.74
2223 2837 0.455410 GCGATGTTGCTATGGCCAAA 59.545 50.000 10.96 0.00 37.74 3.28
2287 2902 3.311110 TGCCGAGGAACTTCGCCT 61.311 61.111 0.95 0.00 41.55 5.52
2353 2968 0.815615 GGCCGATGAGGTGAACCATC 60.816 60.000 1.62 0.00 43.70 3.51
2355 2970 1.808133 GCCGATGAGGTGAACCATCTC 60.808 57.143 1.62 0.51 41.56 2.75
2422 3037 2.525629 TGGTCGGCAGGAGGTTCA 60.526 61.111 0.00 0.00 0.00 3.18
2423 3038 2.047179 GGTCGGCAGGAGGTTCAC 60.047 66.667 0.00 0.00 0.00 3.18
2494 3158 3.993081 GAGGAGATCATGCAATAACGGAG 59.007 47.826 0.00 0.00 0.00 4.63
2513 3179 6.842163 ACGGAGTTCATCAATTAATGTGTTC 58.158 36.000 0.00 0.00 37.78 3.18
2565 3231 2.236489 AATCCTTCCAATGGTGGTGG 57.764 50.000 12.11 5.47 46.11 4.61
2598 3272 1.469703 CAGTACGATGTACCGGTGACA 59.530 52.381 19.93 17.45 0.00 3.58
2663 3343 9.871238 TTAGGAGATGAGTAAATTAGTGTTCAC 57.129 33.333 0.00 0.00 0.00 3.18
2834 3754 4.083643 CCATTATGATGACTTGTCATCGGC 60.084 45.833 27.86 13.70 46.93 5.54
2911 3833 7.648039 AATAGGTTCCAACAAACTAACAACA 57.352 32.000 0.00 0.00 0.00 3.33
2920 3842 4.787551 ACAAACTAACAACAGATGTCCCA 58.212 39.130 0.00 0.00 42.99 4.37
2922 3844 4.431416 AACTAACAACAGATGTCCCACA 57.569 40.909 0.00 0.00 42.99 4.17
2978 3901 9.944663 TGTTGTAAGACTTTTTGTGTATGATTC 57.055 29.630 0.00 0.00 0.00 2.52
2990 3913 6.223138 TGTGTATGATTCGTGTGAAACTTC 57.777 37.500 0.00 0.00 37.71 3.01
3207 4130 5.707764 ACTTTTGTGCCTCCTTCTAAGATTC 59.292 40.000 0.00 0.00 0.00 2.52
3275 4198 8.146412 GCCCTATTTGCTATCTCATTGAAAATT 58.854 33.333 0.00 0.00 0.00 1.82
3326 4250 3.388024 AGCCCTTATTACTCGAGCATTGA 59.612 43.478 13.61 0.00 0.00 2.57
3327 4251 4.127171 GCCCTTATTACTCGAGCATTGAA 58.873 43.478 13.61 0.00 0.00 2.69
3431 4356 8.682936 AATAGAAGGTAGCACCAAATAGAATG 57.317 34.615 7.86 0.00 41.95 2.67
3444 4369 7.761249 CACCAAATAGAATGATTTCCAAACTCC 59.239 37.037 0.00 0.00 31.84 3.85
3498 4434 6.215636 AGTTGTGGTAGAAGGGAATGACTAAT 59.784 38.462 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.593010 GACTTCTCGCCTGTCTAATACAAT 58.407 41.667 0.00 0.00 37.74 2.71
10 11 2.093106 ACGACTTCTCGCCTGTCTAAT 58.907 47.619 0.00 0.00 44.33 1.73
19 20 1.588551 CGTAGTACGACGACTTCTCGC 60.589 57.143 22.03 0.00 46.05 5.03
31 32 1.888215 TCCTATGAGGCCGTAGTACG 58.112 55.000 15.86 15.86 36.20 3.67
38 39 0.947244 GCATTGTTCCTATGAGGCCG 59.053 55.000 0.00 0.00 34.61 6.13
40 41 3.216800 TGATGCATTGTTCCTATGAGGC 58.783 45.455 0.00 0.00 34.61 4.70
43 44 5.623169 TGCTATGATGCATTGTTCCTATGA 58.377 37.500 0.00 0.00 38.12 2.15
49 50 3.629058 CTGCTGCTATGATGCATTGTTC 58.371 45.455 0.00 0.00 42.48 3.18
52 53 1.335964 GGCTGCTGCTATGATGCATTG 60.336 52.381 15.64 0.00 42.48 2.82
54 55 1.235281 CGGCTGCTGCTATGATGCAT 61.235 55.000 15.64 0.00 42.48 3.96
55 56 1.890510 CGGCTGCTGCTATGATGCA 60.891 57.895 15.64 0.00 41.05 3.96
59 60 0.249615 GATGACGGCTGCTGCTATGA 60.250 55.000 15.64 0.00 39.59 2.15
62 63 1.738346 ATCGATGACGGCTGCTGCTA 61.738 55.000 15.64 0.00 40.21 3.49
67 68 0.528466 TCTTCATCGATGACGGCTGC 60.528 55.000 27.28 0.00 40.21 5.25
70 71 2.271800 ACTTTCTTCATCGATGACGGC 58.728 47.619 27.28 0.00 40.21 5.68
76 77 8.100508 TCTGATATACGACTTTCTTCATCGAT 57.899 34.615 0.00 0.00 39.16 3.59
77 78 7.492352 TCTGATATACGACTTTCTTCATCGA 57.508 36.000 0.00 0.00 39.16 3.59
95 96 7.606456 GTGTTTACAGGTTTGATCCTTCTGATA 59.394 37.037 8.70 0.00 35.37 2.15
112 113 6.662414 TTGTCTCTGTTTGAGTGTTTACAG 57.338 37.500 0.00 0.00 43.13 2.74
123 124 3.680789 GGTCGTTGTTTGTCTCTGTTTG 58.319 45.455 0.00 0.00 0.00 2.93
124 125 2.350498 CGGTCGTTGTTTGTCTCTGTTT 59.650 45.455 0.00 0.00 0.00 2.83
125 126 1.931172 CGGTCGTTGTTTGTCTCTGTT 59.069 47.619 0.00 0.00 0.00 3.16
126 127 1.567504 CGGTCGTTGTTTGTCTCTGT 58.432 50.000 0.00 0.00 0.00 3.41
127 128 0.859232 CCGGTCGTTGTTTGTCTCTG 59.141 55.000 0.00 0.00 0.00 3.35
128 129 0.748450 TCCGGTCGTTGTTTGTCTCT 59.252 50.000 0.00 0.00 0.00 3.10
129 130 1.725164 GATCCGGTCGTTGTTTGTCTC 59.275 52.381 0.00 0.00 0.00 3.36
130 131 1.792006 GATCCGGTCGTTGTTTGTCT 58.208 50.000 0.00 0.00 0.00 3.41
131 132 0.437295 CGATCCGGTCGTTGTTTGTC 59.563 55.000 15.48 0.00 45.19 3.18
132 133 2.524300 CGATCCGGTCGTTGTTTGT 58.476 52.632 15.48 0.00 45.19 2.83
150 151 3.452474 CTGGTCTCGATGGATCTGTTTC 58.548 50.000 0.00 0.00 0.00 2.78
162 163 1.691195 TTGGTTGGTGCTGGTCTCGA 61.691 55.000 0.00 0.00 0.00 4.04
176 177 1.474330 GGATCTTGCGGGATTTGGTT 58.526 50.000 0.00 0.00 0.00 3.67
178 179 0.463654 TCGGATCTTGCGGGATTTGG 60.464 55.000 0.00 0.00 0.00 3.28
180 181 0.810031 CGTCGGATCTTGCGGGATTT 60.810 55.000 0.00 0.00 0.00 2.17
189 190 1.067776 GGTGTGTCTTCGTCGGATCTT 60.068 52.381 0.00 0.00 0.00 2.40
200 201 1.227556 GCGTGTGGAGGTGTGTCTT 60.228 57.895 0.00 0.00 0.00 3.01
211 212 1.663379 TATCGTCAGAGGGCGTGTGG 61.663 60.000 4.43 0.00 0.00 4.17
216 217 3.487711 GCATATAGTATCGTCAGAGGGCG 60.488 52.174 0.00 0.00 0.00 6.13
223 224 8.406297 GTCCTAATGATGCATATAGTATCGTCA 58.594 37.037 0.00 0.00 41.68 4.35
224 225 7.588123 CGTCCTAATGATGCATATAGTATCGTC 59.412 40.741 0.00 0.00 41.68 4.20
230 231 4.162320 CCCCGTCCTAATGATGCATATAGT 59.838 45.833 0.00 0.00 0.00 2.12
234 235 2.615391 TCCCCGTCCTAATGATGCATA 58.385 47.619 0.00 0.00 0.00 3.14
236 237 1.072173 CATCCCCGTCCTAATGATGCA 59.928 52.381 0.00 0.00 0.00 3.96
244 245 1.784593 TCATACTCCATCCCCGTCCTA 59.215 52.381 0.00 0.00 0.00 2.94
245 246 0.561184 TCATACTCCATCCCCGTCCT 59.439 55.000 0.00 0.00 0.00 3.85
249 250 2.434336 TGTCTTTCATACTCCATCCCCG 59.566 50.000 0.00 0.00 0.00 5.73
264 265 6.159751 TGCCCCTTAGTAGGAATAATGTCTTT 59.840 38.462 0.00 0.00 45.05 2.52
265 266 5.670361 TGCCCCTTAGTAGGAATAATGTCTT 59.330 40.000 0.00 0.00 45.05 3.01
295 296 1.152830 GTTGGGGATGTGTGGTGGT 59.847 57.895 0.00 0.00 0.00 4.16
306 307 3.246112 CGGTGTCCTGGTTGGGGA 61.246 66.667 0.00 0.00 36.20 4.81
316 317 3.731264 CGTTCTTATGAGACTCGGTGTCC 60.731 52.174 6.59 0.32 46.46 4.02
322 323 3.436496 GTTCCCGTTCTTATGAGACTCG 58.564 50.000 0.00 4.89 32.72 4.18
331 332 1.974543 GGACCCGTTCCCGTTCTTA 59.025 57.895 0.00 0.00 38.70 2.10
347 348 0.533085 TCATTGACGTGCAAACGGGA 60.533 50.000 0.00 0.00 40.48 5.14
393 401 2.611225 AAACGCCCATTTTTGCAAGA 57.389 40.000 0.00 0.00 0.00 3.02
398 406 2.555199 TCACCAAAACGCCCATTTTTG 58.445 42.857 2.17 2.17 41.61 2.44
400 408 2.990066 TTCACCAAAACGCCCATTTT 57.010 40.000 0.00 0.00 31.87 1.82
407 415 4.564769 TGACTTGATTTTTCACCAAAACGC 59.435 37.500 0.00 0.00 37.18 4.84
418 427 7.872138 TGGAGGGAGTATATGACTTGATTTTT 58.128 34.615 0.00 0.00 39.06 1.94
435 444 6.841601 TCACTATATTTTGGAATGGAGGGAG 58.158 40.000 0.00 0.00 0.00 4.30
436 445 6.691491 GCTCACTATATTTTGGAATGGAGGGA 60.691 42.308 0.00 0.00 0.00 4.20
437 446 5.474876 GCTCACTATATTTTGGAATGGAGGG 59.525 44.000 0.00 0.00 0.00 4.30
438 447 5.474876 GGCTCACTATATTTTGGAATGGAGG 59.525 44.000 0.00 0.00 0.00 4.30
439 448 5.474876 GGGCTCACTATATTTTGGAATGGAG 59.525 44.000 0.00 0.00 0.00 3.86
440 449 5.103728 TGGGCTCACTATATTTTGGAATGGA 60.104 40.000 0.00 0.00 0.00 3.41
441 450 5.010012 GTGGGCTCACTATATTTTGGAATGG 59.990 44.000 10.23 0.00 40.58 3.16
442 451 5.277974 CGTGGGCTCACTATATTTTGGAATG 60.278 44.000 16.21 0.00 41.53 2.67
443 452 4.821805 CGTGGGCTCACTATATTTTGGAAT 59.178 41.667 16.21 0.00 41.53 3.01
444 453 4.196193 CGTGGGCTCACTATATTTTGGAA 58.804 43.478 16.21 0.00 41.53 3.53
445 454 3.804036 CGTGGGCTCACTATATTTTGGA 58.196 45.455 16.21 0.00 41.53 3.53
446 455 2.290641 GCGTGGGCTCACTATATTTTGG 59.709 50.000 16.21 0.00 41.53 3.28
447 456 3.609103 GCGTGGGCTCACTATATTTTG 57.391 47.619 16.21 0.00 41.53 2.44
460 469 2.212900 GAACATTGGGAAGCGTGGGC 62.213 60.000 0.00 0.00 40.37 5.36
461 470 0.893270 TGAACATTGGGAAGCGTGGG 60.893 55.000 0.00 0.00 0.00 4.61
462 471 0.958091 TTGAACATTGGGAAGCGTGG 59.042 50.000 0.00 0.00 0.00 4.94
463 472 1.608590 AGTTGAACATTGGGAAGCGTG 59.391 47.619 0.00 0.00 0.00 5.34
464 473 1.981256 AGTTGAACATTGGGAAGCGT 58.019 45.000 0.00 0.00 0.00 5.07
465 474 3.052036 CAAAGTTGAACATTGGGAAGCG 58.948 45.455 5.45 0.00 0.00 4.68
466 475 4.320608 TCAAAGTTGAACATTGGGAAGC 57.679 40.909 12.58 0.00 33.55 3.86
467 476 6.088016 TGATCAAAGTTGAACATTGGGAAG 57.912 37.500 12.58 0.00 41.13 3.46
468 477 6.669125 ATGATCAAAGTTGAACATTGGGAA 57.331 33.333 12.58 0.57 44.88 3.97
469 478 7.773489 TTATGATCAAAGTTGAACATTGGGA 57.227 32.000 18.30 2.40 44.88 4.37
470 479 9.439500 AATTTATGATCAAAGTTGAACATTGGG 57.561 29.630 18.30 0.00 44.88 4.12
484 493 8.966868 GGTCTCCTTGGTTAAATTTATGATCAA 58.033 33.333 0.00 0.00 0.00 2.57
485 494 8.112822 TGGTCTCCTTGGTTAAATTTATGATCA 58.887 33.333 0.00 0.00 0.00 2.92
486 495 8.519799 TGGTCTCCTTGGTTAAATTTATGATC 57.480 34.615 0.00 0.00 0.00 2.92
487 496 8.749354 GTTGGTCTCCTTGGTTAAATTTATGAT 58.251 33.333 0.00 0.00 0.00 2.45
488 497 7.947890 AGTTGGTCTCCTTGGTTAAATTTATGA 59.052 33.333 0.00 0.00 0.00 2.15
489 498 8.028938 CAGTTGGTCTCCTTGGTTAAATTTATG 58.971 37.037 0.00 0.00 0.00 1.90
490 499 7.309805 GCAGTTGGTCTCCTTGGTTAAATTTAT 60.310 37.037 0.00 0.00 0.00 1.40
491 500 6.015772 GCAGTTGGTCTCCTTGGTTAAATTTA 60.016 38.462 0.00 0.00 0.00 1.40
492 501 5.221441 GCAGTTGGTCTCCTTGGTTAAATTT 60.221 40.000 0.00 0.00 0.00 1.82
493 502 4.280929 GCAGTTGGTCTCCTTGGTTAAATT 59.719 41.667 0.00 0.00 0.00 1.82
494 503 3.826729 GCAGTTGGTCTCCTTGGTTAAAT 59.173 43.478 0.00 0.00 0.00 1.40
495 504 3.219281 GCAGTTGGTCTCCTTGGTTAAA 58.781 45.455 0.00 0.00 0.00 1.52
496 505 2.808933 CGCAGTTGGTCTCCTTGGTTAA 60.809 50.000 0.00 0.00 0.00 2.01
497 506 1.270625 CGCAGTTGGTCTCCTTGGTTA 60.271 52.381 0.00 0.00 0.00 2.85
498 507 0.535102 CGCAGTTGGTCTCCTTGGTT 60.535 55.000 0.00 0.00 0.00 3.67
499 508 1.071471 CGCAGTTGGTCTCCTTGGT 59.929 57.895 0.00 0.00 0.00 3.67
500 509 1.672356 CCGCAGTTGGTCTCCTTGG 60.672 63.158 0.00 0.00 0.00 3.61
501 510 2.328099 GCCGCAGTTGGTCTCCTTG 61.328 63.158 0.00 0.00 0.00 3.61
502 511 2.032681 GCCGCAGTTGGTCTCCTT 59.967 61.111 0.00 0.00 0.00 3.36
503 512 4.379243 CGCCGCAGTTGGTCTCCT 62.379 66.667 0.00 0.00 0.00 3.69
505 514 4.373116 TCCGCCGCAGTTGGTCTC 62.373 66.667 0.00 0.00 0.00 3.36
506 515 4.379243 CTCCGCCGCAGTTGGTCT 62.379 66.667 0.00 0.00 0.00 3.85
507 516 3.876589 TTCTCCGCCGCAGTTGGTC 62.877 63.158 0.00 0.00 0.00 4.02
508 517 2.951475 TTTTCTCCGCCGCAGTTGGT 62.951 55.000 0.00 0.00 0.00 3.67
509 518 1.791103 TTTTTCTCCGCCGCAGTTGG 61.791 55.000 0.00 0.00 0.00 3.77
510 519 1.652012 TTTTTCTCCGCCGCAGTTG 59.348 52.632 0.00 0.00 0.00 3.16
511 520 4.150994 TTTTTCTCCGCCGCAGTT 57.849 50.000 0.00 0.00 0.00 3.16
560 569 9.822185 GGGAGCAAAAATTATATCAGTGATTTT 57.178 29.630 11.68 3.27 34.24 1.82
561 570 8.137437 CGGGAGCAAAAATTATATCAGTGATTT 58.863 33.333 11.68 6.10 0.00 2.17
562 571 7.255590 CCGGGAGCAAAAATTATATCAGTGATT 60.256 37.037 11.68 2.21 0.00 2.57
563 572 6.207417 CCGGGAGCAAAAATTATATCAGTGAT 59.793 38.462 11.12 11.12 0.00 3.06
564 573 5.530915 CCGGGAGCAAAAATTATATCAGTGA 59.469 40.000 0.00 0.00 0.00 3.41
565 574 5.762045 CCGGGAGCAAAAATTATATCAGTG 58.238 41.667 0.00 0.00 0.00 3.66
566 575 4.278419 GCCGGGAGCAAAAATTATATCAGT 59.722 41.667 2.18 0.00 42.97 3.41
567 576 4.613622 CGCCGGGAGCAAAAATTATATCAG 60.614 45.833 2.18 0.00 44.04 2.90
568 577 3.252215 CGCCGGGAGCAAAAATTATATCA 59.748 43.478 2.18 0.00 44.04 2.15
569 578 3.821841 CGCCGGGAGCAAAAATTATATC 58.178 45.455 2.18 0.00 44.04 1.63
570 579 2.030274 GCGCCGGGAGCAAAAATTATAT 60.030 45.455 18.32 0.00 44.04 0.86
571 580 1.335496 GCGCCGGGAGCAAAAATTATA 59.665 47.619 18.32 0.00 44.04 0.98
572 581 0.102300 GCGCCGGGAGCAAAAATTAT 59.898 50.000 18.32 0.00 44.04 1.28
573 582 1.244697 TGCGCCGGGAGCAAAAATTA 61.245 50.000 23.47 0.00 44.04 1.40
574 583 2.261361 GCGCCGGGAGCAAAAATT 59.739 55.556 18.32 0.00 44.04 1.82
575 584 2.988684 TGCGCCGGGAGCAAAAAT 60.989 55.556 23.47 0.00 44.04 1.82
580 589 3.993614 ATCAATTGCGCCGGGAGCA 62.994 57.895 21.94 21.94 44.04 4.26
581 590 3.186390 GATCAATTGCGCCGGGAGC 62.186 63.158 16.40 16.40 38.52 4.70
582 591 1.097547 AAGATCAATTGCGCCGGGAG 61.098 55.000 4.18 0.00 0.00 4.30
583 592 1.077787 AAGATCAATTGCGCCGGGA 60.078 52.632 4.18 0.00 0.00 5.14
584 593 1.064621 CAAGATCAATTGCGCCGGG 59.935 57.895 4.18 0.00 0.00 5.73
585 594 1.064621 CCAAGATCAATTGCGCCGG 59.935 57.895 4.18 0.00 0.00 6.13
586 595 1.003545 CTACCAAGATCAATTGCGCCG 60.004 52.381 4.18 0.00 0.00 6.46
587 596 2.017049 ACTACCAAGATCAATTGCGCC 58.983 47.619 4.18 0.00 0.00 6.53
588 597 3.764885 AACTACCAAGATCAATTGCGC 57.235 42.857 0.00 0.00 0.00 6.09
589 598 8.687824 AAATTTAACTACCAAGATCAATTGCG 57.312 30.769 0.00 0.00 0.00 4.85
593 602 9.457436 ACCGTAAATTTAACTACCAAGATCAAT 57.543 29.630 0.00 0.00 0.00 2.57
594 603 8.851541 ACCGTAAATTTAACTACCAAGATCAA 57.148 30.769 0.00 0.00 0.00 2.57
595 604 8.095792 TGACCGTAAATTTAACTACCAAGATCA 58.904 33.333 0.00 0.00 0.00 2.92
596 605 8.483307 TGACCGTAAATTTAACTACCAAGATC 57.517 34.615 0.00 0.00 0.00 2.75
597 606 8.851541 TTGACCGTAAATTTAACTACCAAGAT 57.148 30.769 0.00 0.00 0.00 2.40
598 607 8.674263 TTTGACCGTAAATTTAACTACCAAGA 57.326 30.769 0.00 0.00 0.00 3.02
599 608 8.562052 ACTTTGACCGTAAATTTAACTACCAAG 58.438 33.333 0.00 2.45 0.00 3.61
600 609 8.449251 ACTTTGACCGTAAATTTAACTACCAA 57.551 30.769 0.00 0.00 0.00 3.67
601 610 8.344098 CAACTTTGACCGTAAATTTAACTACCA 58.656 33.333 0.00 0.00 0.00 3.25
602 611 8.558700 TCAACTTTGACCGTAAATTTAACTACC 58.441 33.333 0.00 0.00 31.01 3.18
603 612 9.934190 TTCAACTTTGACCGTAAATTTAACTAC 57.066 29.630 0.00 0.00 36.83 2.73
605 614 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
606 615 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
607 616 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
608 617 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
609 618 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
610 619 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
611 620 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
612 621 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
613 622 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
614 623 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
615 624 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
616 625 0.041312 CCGTGCTTCAACTTTGACCG 60.041 55.000 0.00 0.00 36.83 4.79
617 626 1.264288 CTCCGTGCTTCAACTTTGACC 59.736 52.381 0.00 0.00 36.83 4.02
618 627 2.210116 TCTCCGTGCTTCAACTTTGAC 58.790 47.619 0.00 0.00 36.83 3.18
619 628 2.613026 TCTCCGTGCTTCAACTTTGA 57.387 45.000 0.00 0.00 34.92 2.69
620 629 4.245660 TCTATCTCCGTGCTTCAACTTTG 58.754 43.478 0.00 0.00 0.00 2.77
621 630 4.499183 CTCTATCTCCGTGCTTCAACTTT 58.501 43.478 0.00 0.00 0.00 2.66
622 631 3.118956 CCTCTATCTCCGTGCTTCAACTT 60.119 47.826 0.00 0.00 0.00 2.66
623 632 2.428890 CCTCTATCTCCGTGCTTCAACT 59.571 50.000 0.00 0.00 0.00 3.16
624 633 2.427453 TCCTCTATCTCCGTGCTTCAAC 59.573 50.000 0.00 0.00 0.00 3.18
625 634 2.735151 TCCTCTATCTCCGTGCTTCAA 58.265 47.619 0.00 0.00 0.00 2.69
626 635 2.437085 TCCTCTATCTCCGTGCTTCA 57.563 50.000 0.00 0.00 0.00 3.02
627 636 2.544903 GCTTCCTCTATCTCCGTGCTTC 60.545 54.545 0.00 0.00 0.00 3.86
628 637 1.410882 GCTTCCTCTATCTCCGTGCTT 59.589 52.381 0.00 0.00 0.00 3.91
629 638 1.036707 GCTTCCTCTATCTCCGTGCT 58.963 55.000 0.00 0.00 0.00 4.40
630 639 0.747255 TGCTTCCTCTATCTCCGTGC 59.253 55.000 0.00 0.00 0.00 5.34
631 640 2.028130 AGTGCTTCCTCTATCTCCGTG 58.972 52.381 0.00 0.00 0.00 4.94
632 641 2.445682 AGTGCTTCCTCTATCTCCGT 57.554 50.000 0.00 0.00 0.00 4.69
633 642 3.215151 TGTAGTGCTTCCTCTATCTCCG 58.785 50.000 0.00 0.00 0.00 4.63
634 643 5.799827 AATGTAGTGCTTCCTCTATCTCC 57.200 43.478 0.00 0.00 0.00 3.71
635 644 8.116651 TCATAATGTAGTGCTTCCTCTATCTC 57.883 38.462 0.00 0.00 0.00 2.75
636 645 8.484214 TTCATAATGTAGTGCTTCCTCTATCT 57.516 34.615 0.00 0.00 0.00 1.98
637 646 9.717942 ATTTCATAATGTAGTGCTTCCTCTATC 57.282 33.333 0.00 0.00 0.00 2.08
638 647 9.499479 CATTTCATAATGTAGTGCTTCCTCTAT 57.501 33.333 0.00 0.00 37.06 1.98
639 648 8.704668 TCATTTCATAATGTAGTGCTTCCTCTA 58.295 33.333 0.00 0.00 41.54 2.43
640 649 7.568349 TCATTTCATAATGTAGTGCTTCCTCT 58.432 34.615 0.00 0.00 41.54 3.69
641 650 7.792374 TCATTTCATAATGTAGTGCTTCCTC 57.208 36.000 0.00 0.00 41.54 3.71
642 651 7.284034 CCTTCATTTCATAATGTAGTGCTTCCT 59.716 37.037 0.00 0.00 41.54 3.36
643 652 7.420800 CCTTCATTTCATAATGTAGTGCTTCC 58.579 38.462 0.00 0.00 41.54 3.46
644 653 7.283127 TCCCTTCATTTCATAATGTAGTGCTTC 59.717 37.037 0.00 0.00 41.54 3.86
645 654 7.118723 TCCCTTCATTTCATAATGTAGTGCTT 58.881 34.615 0.00 0.00 41.54 3.91
646 655 6.662755 TCCCTTCATTTCATAATGTAGTGCT 58.337 36.000 0.00 0.00 41.54 4.40
647 656 6.543831 ACTCCCTTCATTTCATAATGTAGTGC 59.456 38.462 0.00 0.00 41.54 4.40
648 657 9.784531 ATACTCCCTTCATTTCATAATGTAGTG 57.215 33.333 0.00 0.00 41.54 2.74
649 658 9.784531 CATACTCCCTTCATTTCATAATGTAGT 57.215 33.333 0.00 0.00 41.54 2.73
652 661 8.717717 TCTCATACTCCCTTCATTTCATAATGT 58.282 33.333 0.00 0.00 41.54 2.71
653 662 9.736414 ATCTCATACTCCCTTCATTTCATAATG 57.264 33.333 0.00 0.00 42.06 1.90
663 672 9.040259 CCTTGAATATATCTCATACTCCCTTCA 57.960 37.037 0.00 0.00 0.00 3.02
664 673 8.482128 CCCTTGAATATATCTCATACTCCCTTC 58.518 40.741 0.00 0.00 0.00 3.46
665 674 7.404396 CCCCTTGAATATATCTCATACTCCCTT 59.596 40.741 0.00 0.00 0.00 3.95
666 675 6.905776 CCCCTTGAATATATCTCATACTCCCT 59.094 42.308 0.00 0.00 0.00 4.20
667 676 6.903534 TCCCCTTGAATATATCTCATACTCCC 59.096 42.308 0.00 0.00 0.00 4.30
668 677 7.416890 CGTCCCCTTGAATATATCTCATACTCC 60.417 44.444 0.00 0.00 0.00 3.85
669 678 7.416890 CCGTCCCCTTGAATATATCTCATACTC 60.417 44.444 0.00 0.00 0.00 2.59
670 679 6.381420 CCGTCCCCTTGAATATATCTCATACT 59.619 42.308 0.00 0.00 0.00 2.12
671 680 6.154706 ACCGTCCCCTTGAATATATCTCATAC 59.845 42.308 0.00 0.00 0.00 2.39
672 681 6.261435 ACCGTCCCCTTGAATATATCTCATA 58.739 40.000 0.00 0.00 0.00 2.15
673 682 5.094387 ACCGTCCCCTTGAATATATCTCAT 58.906 41.667 0.00 0.00 0.00 2.90
683 692 2.510613 GAAAATGACCGTCCCCTTGAA 58.489 47.619 0.00 0.00 0.00 2.69
685 694 1.173913 GGAAAATGACCGTCCCCTTG 58.826 55.000 0.00 0.00 0.00 3.61
686 695 0.774908 TGGAAAATGACCGTCCCCTT 59.225 50.000 0.00 0.00 0.00 3.95
690 699 8.883731 CAGATTATATATGGAAAATGACCGTCC 58.116 37.037 0.00 0.00 0.00 4.79
696 705 7.148255 GCGCACCAGATTATATATGGAAAATGA 60.148 37.037 0.30 0.00 44.32 2.57
697 706 6.968904 GCGCACCAGATTATATATGGAAAATG 59.031 38.462 0.30 0.00 44.32 2.32
698 707 6.658816 TGCGCACCAGATTATATATGGAAAAT 59.341 34.615 5.66 0.00 44.32 1.82
699 708 6.000840 TGCGCACCAGATTATATATGGAAAA 58.999 36.000 5.66 0.00 44.32 2.29
721 730 0.033504 TCTTCTGTCAACTCGGGTGC 59.966 55.000 0.00 0.00 0.00 5.01
732 741 2.576406 CACGTCGTCTTCTCTTCTGTC 58.424 52.381 0.00 0.00 0.00 3.51
754 763 1.375523 CCGCACCAACTACCACTCC 60.376 63.158 0.00 0.00 0.00 3.85
789 798 1.147600 GGCCGACCGGGTGAAATAT 59.852 57.895 3.30 0.00 38.44 1.28
790 799 2.246761 CTGGCCGACCGGGTGAAATA 62.247 60.000 3.30 0.00 38.86 1.40
791 800 3.622060 CTGGCCGACCGGGTGAAAT 62.622 63.158 3.30 0.00 38.86 2.17
792 801 4.323477 CTGGCCGACCGGGTGAAA 62.323 66.667 3.30 0.00 38.86 2.69
799 808 3.499737 GAATGCACTGGCCGACCG 61.500 66.667 0.00 0.00 39.70 4.79
800 809 3.499737 CGAATGCACTGGCCGACC 61.500 66.667 0.00 0.00 40.13 4.79
811 820 1.947597 TTGATTGGCAGGGCGAATGC 61.948 55.000 3.17 0.00 37.12 3.56
822 1350 2.370281 TGTCGTCTCTCTTGATTGGC 57.630 50.000 0.00 0.00 0.00 4.52
831 1359 4.069304 AGCCTCTACATATGTCGTCTCTC 58.931 47.826 12.68 0.00 0.00 3.20
832 1360 4.093472 AGCCTCTACATATGTCGTCTCT 57.907 45.455 12.68 3.01 0.00 3.10
834 1362 3.570550 GGAAGCCTCTACATATGTCGTCT 59.429 47.826 12.68 3.14 0.00 4.18
835 1363 3.609644 CGGAAGCCTCTACATATGTCGTC 60.610 52.174 12.68 5.34 0.00 4.20
836 1364 2.293677 CGGAAGCCTCTACATATGTCGT 59.706 50.000 12.68 0.00 0.00 4.34
837 1365 2.293677 ACGGAAGCCTCTACATATGTCG 59.706 50.000 12.68 6.31 0.00 4.35
838 1366 3.305471 GGACGGAAGCCTCTACATATGTC 60.305 52.174 12.68 0.00 0.00 3.06
839 1367 2.628657 GGACGGAAGCCTCTACATATGT 59.371 50.000 13.93 13.93 0.00 2.29
841 1369 2.249139 GGGACGGAAGCCTCTACATAT 58.751 52.381 0.00 0.00 0.00 1.78
842 1370 1.063492 TGGGACGGAAGCCTCTACATA 60.063 52.381 0.00 0.00 0.00 2.29
843 1371 0.325296 TGGGACGGAAGCCTCTACAT 60.325 55.000 0.00 0.00 0.00 2.29
844 1372 0.325296 ATGGGACGGAAGCCTCTACA 60.325 55.000 0.00 0.00 0.00 2.74
845 1373 1.700955 TATGGGACGGAAGCCTCTAC 58.299 55.000 0.00 0.00 0.00 2.59
846 1374 2.696526 ATATGGGACGGAAGCCTCTA 57.303 50.000 0.00 0.00 0.00 2.43
847 1375 2.696526 TATATGGGACGGAAGCCTCT 57.303 50.000 0.00 0.00 0.00 3.69
848 1376 3.665190 CTTTATATGGGACGGAAGCCTC 58.335 50.000 0.00 0.00 0.00 4.70
850 1378 2.152016 GCTTTATATGGGACGGAAGCC 58.848 52.381 0.00 0.00 34.87 4.35
852 1380 3.771577 AGGCTTTATATGGGACGGAAG 57.228 47.619 0.00 0.00 0.00 3.46
853 1381 3.493699 CGAAGGCTTTATATGGGACGGAA 60.494 47.826 0.00 0.00 0.00 4.30
854 1382 2.036733 CGAAGGCTTTATATGGGACGGA 59.963 50.000 0.00 0.00 0.00 4.69
855 1383 2.413837 CGAAGGCTTTATATGGGACGG 58.586 52.381 0.00 0.00 0.00 4.79
856 1384 1.798813 GCGAAGGCTTTATATGGGACG 59.201 52.381 0.00 0.00 35.83 4.79
857 1385 2.548480 GTGCGAAGGCTTTATATGGGAC 59.452 50.000 0.00 0.00 40.82 4.46
858 1386 2.171659 TGTGCGAAGGCTTTATATGGGA 59.828 45.455 0.00 0.00 40.82 4.37
859 1387 2.571212 TGTGCGAAGGCTTTATATGGG 58.429 47.619 0.00 0.00 40.82 4.00
860 1388 3.189287 GGATGTGCGAAGGCTTTATATGG 59.811 47.826 0.00 0.00 40.82 2.74
861 1389 3.120546 CGGATGTGCGAAGGCTTTATATG 60.121 47.826 0.00 0.00 40.82 1.78
895 1479 1.069204 ACGTCTTGTGCTCTGTGATGT 59.931 47.619 0.00 0.00 0.00 3.06
916 1500 1.637553 AGCAAGAGATGGATGGTTGGT 59.362 47.619 0.00 0.00 0.00 3.67
917 1501 2.022195 CAGCAAGAGATGGATGGTTGG 58.978 52.381 0.00 0.00 0.00 3.77
918 1502 1.404391 GCAGCAAGAGATGGATGGTTG 59.596 52.381 0.00 0.00 0.00 3.77
919 1503 1.005097 TGCAGCAAGAGATGGATGGTT 59.995 47.619 0.00 0.00 0.00 3.67
920 1504 0.622136 TGCAGCAAGAGATGGATGGT 59.378 50.000 0.00 0.00 0.00 3.55
921 1505 1.880675 GATGCAGCAAGAGATGGATGG 59.119 52.381 0.00 0.00 42.47 3.51
923 1507 1.202903 GGGATGCAGCAAGAGATGGAT 60.203 52.381 3.51 0.00 45.19 3.41
927 1511 0.763652 ATCGGGATGCAGCAAGAGAT 59.236 50.000 3.51 0.00 0.00 2.75
928 1512 0.105593 GATCGGGATGCAGCAAGAGA 59.894 55.000 3.51 0.00 0.00 3.10
930 1514 1.146930 GGATCGGGATGCAGCAAGA 59.853 57.895 3.51 2.19 0.00 3.02
939 1553 2.203070 GTGCGCTTGGATCGGGAT 60.203 61.111 9.73 0.00 0.00 3.85
959 1573 7.799784 TCTAATTAAGTTTGTTACCTTGTCGC 58.200 34.615 0.00 0.00 0.00 5.19
1005 1619 1.372004 CGGGTTTGTGTCGACGCTA 60.372 57.895 27.76 19.13 0.00 4.26
1009 1623 3.708734 CGCCGGGTTTGTGTCGAC 61.709 66.667 9.11 9.11 0.00 4.20
1030 1644 2.996168 AAGCTGCAACCTTCGACGCT 62.996 55.000 1.02 0.00 0.00 5.07
1121 1735 1.144716 GGCATGGACTCGATGCTGA 59.855 57.895 21.23 0.00 44.75 4.26
1155 1769 4.835927 CGTAGGTAGCCTGGCTTG 57.164 61.111 28.55 6.44 40.44 4.01
1174 1788 1.153429 GGGACGCCATAAGCTCGTT 60.153 57.895 0.00 0.00 40.39 3.85
1274 1888 0.883370 GAACGCGAAGAAGTTGGGGT 60.883 55.000 15.93 0.00 38.89 4.95
1326 1940 1.700042 CCGAGGCAATTAGCTCCCCT 61.700 60.000 0.00 0.00 44.79 4.79
1335 1949 0.611618 TGTTCATGGCCGAGGCAATT 60.612 50.000 16.65 0.00 42.43 2.32
1437 2051 0.907486 TCATGAAGCTAGCTGGCAGT 59.093 50.000 24.99 11.55 34.17 4.40
1444 2058 0.375106 GTGCGGTTCATGAAGCTAGC 59.625 55.000 29.27 25.78 36.72 3.42
1491 2105 0.475632 TGGTGGTCCCAAGGATGACT 60.476 55.000 0.00 0.00 41.50 3.41
1530 2144 3.825160 ATCACGTGCGGCAACCAGT 62.825 57.895 11.67 0.00 0.00 4.00
1533 2147 4.759096 GCATCACGTGCGGCAACC 62.759 66.667 21.36 0.00 45.23 3.77
1582 2196 1.375908 TGAGCCTTGTGATGCGGTC 60.376 57.895 0.00 0.00 0.00 4.79
1583 2197 1.672356 GTGAGCCTTGTGATGCGGT 60.672 57.895 0.00 0.00 0.00 5.68
1586 2200 1.672356 ACCGTGAGCCTTGTGATGC 60.672 57.895 0.00 0.00 0.00 3.91
1613 2227 1.498865 CGTGGAGTGTGTCTGGTTGC 61.499 60.000 0.00 0.00 0.00 4.17
1615 2229 0.539986 AACGTGGAGTGTGTCTGGTT 59.460 50.000 0.00 0.00 0.00 3.67
1654 2268 1.990160 TTGGCAGGGTCAAAGTCGGT 61.990 55.000 0.00 0.00 0.00 4.69
1658 2272 0.178990 GAGGTTGGCAGGGTCAAAGT 60.179 55.000 0.00 0.00 0.00 2.66
1662 2276 3.636231 CGGAGGTTGGCAGGGTCA 61.636 66.667 0.00 0.00 0.00 4.02
1762 2376 0.253044 ATGTATGTTGGCACGAGGCT 59.747 50.000 8.06 0.00 44.01 4.58
1764 2378 1.935873 CAGATGTATGTTGGCACGAGG 59.064 52.381 0.00 0.00 0.00 4.63
1797 2411 2.050168 GCGTTGGACGACGTGGTA 60.050 61.111 4.58 0.00 46.05 3.25
1839 2453 2.401583 TAAACATGGCTGCGACATCT 57.598 45.000 0.00 0.00 0.00 2.90
1899 2513 1.363744 GAAACTCCGGACAGATGCAG 58.636 55.000 0.00 0.00 0.00 4.41
1924 2538 3.253230 CATGCTCAACGCCATCGATATA 58.747 45.455 0.00 0.00 39.41 0.86
1959 2573 1.078497 CCACTTGTGCGGGCTCATA 60.078 57.895 0.00 0.00 0.00 2.15
2017 2631 2.279918 GGTGAGACGGTGCGTGTT 60.280 61.111 0.00 0.00 41.37 3.32
2048 2662 4.082190 CGTTCTTCAGATACTCTGGGTTCA 60.082 45.833 4.43 0.00 44.39 3.18
2064 2678 0.167689 ACTCGGTAGCGTCGTTCTTC 59.832 55.000 14.79 0.00 0.00 2.87
2089 2703 0.982852 TCCTTGAGATCGGTGGCCAT 60.983 55.000 9.72 0.00 0.00 4.40
2090 2704 1.612146 TCCTTGAGATCGGTGGCCA 60.612 57.895 0.00 0.00 0.00 5.36
2172 2786 1.021390 CCTGAAGCTTGGTAGTGCCG 61.021 60.000 2.10 0.00 41.21 5.69
2223 2837 0.107945 GGACAAGCTCCTCGAATGCT 60.108 55.000 0.00 1.32 38.87 3.79
2287 2902 3.889815 CCCTGATTCTGAAGCATACCAA 58.110 45.455 8.97 0.00 0.00 3.67
2353 2968 1.617018 TTGAGCCGGTCCATCAGGAG 61.617 60.000 1.90 0.00 46.92 3.69
2355 2970 1.450312 GTTGAGCCGGTCCATCAGG 60.450 63.158 1.90 0.00 34.52 3.86
2415 3030 1.731750 GCGAACCGTAGAGTGAACCTC 60.732 57.143 0.00 0.00 40.80 3.85
2422 3037 1.372087 CCTACCGCGAACCGTAGAGT 61.372 60.000 18.16 3.39 34.38 3.24
2423 3038 1.354506 CCTACCGCGAACCGTAGAG 59.645 63.158 18.16 7.68 34.38 2.43
2513 3179 9.677567 CCCCTCACAAACAATAATAATTAATCG 57.322 33.333 0.00 0.00 0.00 3.34
2562 3228 4.545706 TGCCGGCGGATCATCCAC 62.546 66.667 33.44 9.82 35.91 4.02
2565 3231 1.664965 GTACTGCCGGCGGATCATC 60.665 63.158 41.14 20.37 0.00 2.92
2598 3272 4.330944 TCACAACACGTCAATAGAGGTT 57.669 40.909 0.00 0.00 40.64 3.50
2828 3748 1.006086 TCAAATAGTGCACGCCGATG 58.994 50.000 12.01 8.61 0.00 3.84
2834 3754 7.026562 TCCATAAAAATGTCAAATAGTGCACG 58.973 34.615 12.01 0.00 0.00 5.34
2877 3798 9.626045 GTTTGTTGGAACCTATTTTCTTATCAG 57.374 33.333 0.00 0.00 0.00 2.90
2978 3901 5.293569 AGGTAGACAAAAGAAGTTTCACACG 59.706 40.000 0.00 0.00 0.00 4.49
2990 3913 7.910683 GTCAACAAGAAAGAAGGTAGACAAAAG 59.089 37.037 0.00 0.00 0.00 2.27
3038 3961 7.671398 ACTGAAGATATTTCCAATGGAAGTTGT 59.329 33.333 15.20 5.77 43.06 3.32
3076 3999 5.025826 GGTCGTTAAATTGGTATTCTTGCG 58.974 41.667 0.00 0.00 0.00 4.85
3132 4055 5.523552 CACAAAGATCGCCATGTATTGACTA 59.476 40.000 0.00 0.00 0.00 2.59
3133 4056 4.333649 CACAAAGATCGCCATGTATTGACT 59.666 41.667 0.00 0.00 0.00 3.41
3207 4130 1.431496 TGATGTCTCGTGCACATGTG 58.569 50.000 21.83 21.83 34.49 3.21
3245 4168 4.778213 TGAGATAGCAAATAGGGCAAGT 57.222 40.909 0.00 0.00 0.00 3.16
3246 4169 5.766670 TCAATGAGATAGCAAATAGGGCAAG 59.233 40.000 0.00 0.00 0.00 4.01
3275 4198 7.007116 AGACATGAGGTAAGTAGCTATCATCA 58.993 38.462 0.00 2.69 33.58 3.07
3371 4296 8.986477 AAACGGTATGTAAACTAAAGTACGAT 57.014 30.769 0.00 0.00 0.00 3.73
3398 4323 4.404715 GGTGCTACCTTCTATTAGGACACA 59.595 45.833 0.00 0.00 38.15 3.72
3431 4356 4.077108 ACCTAAACCGGAGTTTGGAAATC 58.923 43.478 22.32 0.00 44.76 2.17
3444 4369 4.448395 TGTCGTGATTTTACACCTAAACCG 59.552 41.667 0.00 0.00 37.48 4.44
3498 4434 4.890158 TGTCAAACTTGAGGAGCTATGA 57.110 40.909 0.00 0.00 37.98 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.