Multiple sequence alignment - TraesCS5A01G549600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G549600 chr5A 100.000 5448 0 0 1 5448 703380920 703386367 0.000000e+00 10061.0
1 TraesCS5A01G549600 chr4D 95.049 1737 68 9 119 1844 506933921 506935650 0.000000e+00 2715.0
2 TraesCS5A01G549600 chr4D 95.181 913 35 4 2410 3314 506936497 506937408 0.000000e+00 1434.0
3 TraesCS5A01G549600 chr4D 92.054 969 56 15 4342 5301 506938351 506939307 0.000000e+00 1343.0
4 TraesCS5A01G549600 chr4D 93.092 912 52 4 3338 4246 506937403 506938306 0.000000e+00 1325.0
5 TraesCS5A01G549600 chr4D 95.467 375 15 2 2044 2418 506935662 506936034 1.010000e-166 597.0
6 TraesCS5A01G549600 chr4D 83.426 537 55 26 985 1514 435661387 435660878 8.260000e-128 468.0
7 TraesCS5A01G549600 chr4D 84.926 471 47 16 3755 4224 435659429 435658982 6.430000e-124 455.0
8 TraesCS5A01G549600 chr4D 96.825 126 4 0 1 126 506933767 506933892 1.540000e-50 211.0
9 TraesCS5A01G549600 chr4B 86.657 1379 142 25 2887 4246 664195766 664194411 0.000000e+00 1489.0
10 TraesCS5A01G549600 chr4B 91.151 1051 73 15 4259 5301 664194215 664193177 0.000000e+00 1408.0
11 TraesCS5A01G549600 chr4B 79.754 894 117 46 3336 4224 537368609 537367775 1.690000e-164 590.0
12 TraesCS5A01G549600 chr4B 86.940 536 36 8 697 1215 664200682 664200164 6.120000e-159 571.0
13 TraesCS5A01G549600 chr4B 83.549 541 54 27 985 1517 537371986 537371473 1.780000e-129 473.0
14 TraesCS5A01G549600 chr4B 88.764 267 30 0 2901 3167 537370740 537370474 1.460000e-85 327.0
15 TraesCS5A01G549600 chr4B 84.985 333 32 1 1202 1534 664200106 664199792 6.810000e-84 322.0
16 TraesCS5A01G549600 chr4B 86.174 311 27 8 2471 2776 664210127 664210426 6.810000e-84 322.0
17 TraesCS5A01G549600 chr4B 83.594 256 35 4 2207 2460 664198810 664198560 3.280000e-57 233.0
18 TraesCS5A01G549600 chr4B 86.772 189 15 2 120 302 664201348 664201164 9.250000e-48 202.0
19 TraesCS5A01G549600 chr4B 90.728 151 11 3 5152 5301 664189066 664188918 1.200000e-46 198.0
20 TraesCS5A01G549600 chr4B 92.647 68 5 0 4257 4324 664194429 664194362 1.250000e-16 99.0
21 TraesCS5A01G549600 chr4B 93.443 61 4 0 648 708 664200843 664200783 2.090000e-14 91.6
22 TraesCS5A01G549600 chr4B 90.909 66 6 0 4259 4324 664194286 664194221 7.520000e-14 89.8
23 TraesCS5A01G549600 chr4B 97.500 40 1 0 15 54 197304456 197304417 9.790000e-08 69.4
24 TraesCS5A01G549600 chr4A 78.834 978 142 43 3273 4237 32118303 32119228 2.810000e-167 599.0
25 TraesCS5A01G549600 chr4A 84.242 495 41 23 985 1473 32116398 32116861 1.080000e-121 448.0
26 TraesCS5A01G549600 chr4A 98.454 194 3 0 1853 2046 503041390 503041197 5.230000e-90 342.0
27 TraesCS5A01G549600 chr4A 96.618 207 6 1 1853 2058 596759156 596759362 5.230000e-90 342.0
28 TraesCS5A01G549600 chr4A 97.959 196 4 0 1853 2048 175771742 175771547 1.880000e-89 340.0
29 TraesCS5A01G549600 chr3B 85.253 434 51 8 3806 4237 800725651 800726073 8.380000e-118 435.0
30 TraesCS5A01G549600 chr3B 77.372 548 86 22 2886 3424 800710933 800711451 1.920000e-74 291.0
31 TraesCS5A01G549600 chr3A 99.479 192 1 0 1853 2044 250171242 250171051 3.120000e-92 350.0
32 TraesCS5A01G549600 chr3A 98.964 193 2 0 1853 2045 90481976 90481784 4.040000e-91 346.0
33 TraesCS5A01G549600 chr3A 98.964 193 2 0 1853 2045 321099855 321100047 4.040000e-91 346.0
34 TraesCS5A01G549600 chr3A 97.015 201 5 1 1853 2052 356838927 356838727 2.430000e-88 337.0
35 TraesCS5A01G549600 chr7A 97.970 197 4 0 1853 2049 691163344 691163148 5.230000e-90 342.0
36 TraesCS5A01G549600 chr7A 85.057 261 39 0 1218 1478 554480915 554480655 3.240000e-67 267.0
37 TraesCS5A01G549600 chr7A 85.446 213 31 0 3811 4023 716256159 716255947 7.100000e-54 222.0
38 TraesCS5A01G549600 chrUn 97.015 201 5 1 1853 2052 24548903 24549103 2.430000e-88 337.0
39 TraesCS5A01G549600 chr7D 82.213 253 45 0 3771 4023 620927121 620927373 9.190000e-53 219.0
40 TraesCS5A01G549600 chr7B 82.213 253 43 2 3772 4023 719078544 719078795 3.300000e-52 217.0
41 TraesCS5A01G549600 chr7B 81.496 254 41 3 1221 1468 719076181 719076434 2.570000e-48 204.0
42 TraesCS5A01G549600 chr6A 77.064 218 40 6 1252 1461 606076112 606076327 3.450000e-22 117.0
43 TraesCS5A01G549600 chr5B 97.143 35 0 1 23 57 686200659 686200692 2.120000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G549600 chr5A 703380920 703386367 5447 False 10061.000000 10061 100.000000 1 5448 1 chr5A.!!$F1 5447
1 TraesCS5A01G549600 chr4D 506933767 506939307 5540 False 1270.833333 2715 94.611333 1 5301 6 chr4D.!!$F1 5300
2 TraesCS5A01G549600 chr4D 435658982 435661387 2405 True 461.500000 468 84.176000 985 4224 2 chr4D.!!$R1 3239
3 TraesCS5A01G549600 chr4B 664193177 664201348 8171 True 500.600000 1489 88.566444 120 5301 9 chr4B.!!$R4 5181
4 TraesCS5A01G549600 chr4B 537367775 537371986 4211 True 463.333333 590 84.022333 985 4224 3 chr4B.!!$R3 3239
5 TraesCS5A01G549600 chr4A 32116398 32119228 2830 False 523.500000 599 81.538000 985 4237 2 chr4A.!!$F2 3252
6 TraesCS5A01G549600 chr3B 800710933 800711451 518 False 291.000000 291 77.372000 2886 3424 1 chr3B.!!$F1 538
7 TraesCS5A01G549600 chr7B 719076181 719078795 2614 False 210.500000 217 81.854500 1221 4023 2 chr7B.!!$F1 2802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 974 1.622232 GTTGGTCCGTAGTAGAACGC 58.378 55.0 0.00 0.00 41.51 4.84 F
1849 2715 0.327924 CCCTACATGGACACTGCCAA 59.672 55.0 0.00 0.00 42.16 4.52 F
3295 8239 0.033601 AGGTGGTGCGAGAGATCTCT 60.034 55.0 25.39 25.39 43.78 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 2815 0.948678 TGGCTACGAGTTGTTTTGCC 59.051 50.0 12.35 12.35 39.28 4.52 R
3313 8822 0.112606 TGTCCTCCGTCTCCACTCTT 59.887 55.0 0.00 0.00 0.00 2.85 R
4881 11791 0.102300 TAGGCGTCACACGATGATGG 59.898 55.0 13.16 4.34 46.05 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 224 3.306917 TGCCAACATGCATGAGAAAAG 57.693 42.857 32.75 14.89 36.04 2.27
383 426 9.645059 TGATATCACTACTTTTGTTTCTCTCAG 57.355 33.333 0.00 0.00 0.00 3.35
441 484 1.644509 TGCACATAGTCCACCTCACT 58.355 50.000 0.00 0.00 0.00 3.41
512 555 6.356556 ACATGCATGGAAACTGCTACTTATA 58.643 36.000 29.41 0.00 40.34 0.98
513 556 7.000472 ACATGCATGGAAACTGCTACTTATAT 59.000 34.615 29.41 0.00 40.34 0.86
514 557 8.156820 ACATGCATGGAAACTGCTACTTATATA 58.843 33.333 29.41 0.00 40.34 0.86
730 959 7.170998 GGTAGTTATAGACATGGATTTCGTTGG 59.829 40.741 0.00 0.00 0.00 3.77
743 972 3.559238 TTCGTTGGTCCGTAGTAGAAC 57.441 47.619 0.00 0.00 0.00 3.01
745 974 1.622232 GTTGGTCCGTAGTAGAACGC 58.378 55.000 0.00 0.00 41.51 4.84
758 987 5.784578 AGTAGAACGCAAATTCCCTTTTT 57.215 34.783 0.00 0.00 0.00 1.94
901 1134 2.826488 AGACAAGTGCTCCTACTGGAT 58.174 47.619 0.00 0.00 42.29 3.41
922 1155 9.640963 CTGGATTAGTAGTATATAAACAGGCAC 57.359 37.037 0.00 0.00 0.00 5.01
951 1184 6.039941 GCTAGTATGAAGCAGAGAGGAAACTA 59.960 42.308 0.00 0.00 39.60 2.24
962 1195 3.450904 AGAGGAAACTATGTGCCCACTA 58.549 45.455 0.00 0.00 44.43 2.74
963 1196 3.844211 AGAGGAAACTATGTGCCCACTAA 59.156 43.478 0.00 0.00 44.43 2.24
1229 1556 0.687354 ACGTTGTTGCAGGGATCTCT 59.313 50.000 0.00 0.00 0.00 3.10
1451 1784 1.874562 CTCCGACTTCGACGACCTT 59.125 57.895 0.00 0.00 43.02 3.50
1468 1801 0.792640 CTTGCCAGCAACGTCTACAG 59.207 55.000 0.00 0.00 0.00 2.74
1489 1825 4.080687 AGGGAGAAGTATATACGCCTGTC 58.919 47.826 12.67 7.62 0.00 3.51
1514 1850 8.356657 TCAAATGAATTTCTGTACCACGAAAAT 58.643 29.630 0.00 0.00 33.37 1.82
1521 1857 1.950216 TGTACCACGAAAATGCAAGCA 59.050 42.857 0.00 0.00 0.00 3.91
1722 2524 3.151912 AGAGATGGAGCAAAAGCAACT 57.848 42.857 0.00 0.00 0.00 3.16
1844 2710 1.899437 CGTGCCCCTACATGGACACT 61.899 60.000 0.00 0.00 39.21 3.55
1846 2712 1.452108 GCCCCTACATGGACACTGC 60.452 63.158 0.00 0.00 38.35 4.40
1847 2713 1.224592 CCCCTACATGGACACTGCC 59.775 63.158 0.00 0.00 38.35 4.85
1848 2714 1.561769 CCCCTACATGGACACTGCCA 61.562 60.000 0.00 0.00 43.23 4.92
1849 2715 0.327924 CCCTACATGGACACTGCCAA 59.672 55.000 0.00 0.00 42.16 4.52
1850 2716 1.453155 CCTACATGGACACTGCCAAC 58.547 55.000 0.00 0.00 42.16 3.77
1851 2717 1.003580 CCTACATGGACACTGCCAACT 59.996 52.381 0.00 0.00 42.16 3.16
1853 2719 3.118261 CCTACATGGACACTGCCAACTAT 60.118 47.826 0.00 0.00 42.16 2.12
1854 2720 3.439857 ACATGGACACTGCCAACTATT 57.560 42.857 0.00 0.00 42.16 1.73
1855 2721 3.084039 ACATGGACACTGCCAACTATTG 58.916 45.455 0.00 0.00 42.16 1.90
1885 2751 4.886247 CCAATATTTGGCTTGCCAAATG 57.114 40.909 40.40 31.51 46.02 2.32
1886 2752 4.263435 CCAATATTTGGCTTGCCAAATGT 58.737 39.130 40.40 35.55 46.02 2.71
1887 2753 4.701171 CCAATATTTGGCTTGCCAAATGTT 59.299 37.500 40.40 37.64 45.43 2.71
1888 2754 5.883503 AATATTTGGCTTGCCAAATGTTG 57.116 34.783 40.40 0.00 46.02 3.33
1916 2782 3.804036 CCAACTATTGGCAATACCGAGA 58.196 45.455 15.73 0.00 45.17 4.04
1917 2783 3.560068 CCAACTATTGGCAATACCGAGAC 59.440 47.826 15.73 0.00 45.17 3.36
1918 2784 4.442706 CAACTATTGGCAATACCGAGACT 58.557 43.478 15.73 0.00 43.94 3.24
1919 2785 4.755266 ACTATTGGCAATACCGAGACTT 57.245 40.909 15.73 0.00 43.94 3.01
1920 2786 4.442706 ACTATTGGCAATACCGAGACTTG 58.557 43.478 15.73 5.92 43.94 3.16
1921 2787 1.448985 TTGGCAATACCGAGACTTGC 58.551 50.000 0.00 0.00 43.94 4.01
1923 2789 3.153024 GCAATACCGAGACTTGCCA 57.847 52.632 0.00 0.00 39.42 4.92
1924 2790 1.448985 GCAATACCGAGACTTGCCAA 58.551 50.000 0.00 0.00 39.42 4.52
1925 2791 1.130561 GCAATACCGAGACTTGCCAAC 59.869 52.381 0.00 0.00 39.42 3.77
1926 2792 2.699954 CAATACCGAGACTTGCCAACT 58.300 47.619 0.00 0.00 0.00 3.16
1927 2793 3.857052 CAATACCGAGACTTGCCAACTA 58.143 45.455 0.00 0.00 0.00 2.24
1928 2794 4.442706 CAATACCGAGACTTGCCAACTAT 58.557 43.478 0.00 0.00 0.00 2.12
1929 2795 4.755266 ATACCGAGACTTGCCAACTATT 57.245 40.909 0.00 0.00 0.00 1.73
1930 2796 2.699954 ACCGAGACTTGCCAACTATTG 58.300 47.619 0.00 0.00 0.00 1.90
1944 2810 6.266168 CCAACTATTGGCAACTTTATGTGA 57.734 37.500 0.00 0.00 45.17 3.58
1945 2811 6.324819 CCAACTATTGGCAACTTTATGTGAG 58.675 40.000 0.00 0.00 45.17 3.51
1946 2812 6.150976 CCAACTATTGGCAACTTTATGTGAGA 59.849 38.462 0.00 0.00 45.17 3.27
1947 2813 6.992063 ACTATTGGCAACTTTATGTGAGAG 57.008 37.500 0.00 0.00 37.61 3.20
1948 2814 6.711277 ACTATTGGCAACTTTATGTGAGAGA 58.289 36.000 0.00 0.00 37.61 3.10
1949 2815 6.820656 ACTATTGGCAACTTTATGTGAGAGAG 59.179 38.462 0.00 0.00 37.61 3.20
1950 2816 3.942829 TGGCAACTTTATGTGAGAGAGG 58.057 45.455 0.00 0.00 37.61 3.69
1951 2817 2.680339 GGCAACTTTATGTGAGAGAGGC 59.320 50.000 0.00 0.00 0.00 4.70
1952 2818 3.338249 GCAACTTTATGTGAGAGAGGCA 58.662 45.455 0.00 0.00 0.00 4.75
1953 2819 3.753272 GCAACTTTATGTGAGAGAGGCAA 59.247 43.478 0.00 0.00 0.00 4.52
1954 2820 4.216257 GCAACTTTATGTGAGAGAGGCAAA 59.784 41.667 0.00 0.00 0.00 3.68
1955 2821 5.278463 GCAACTTTATGTGAGAGAGGCAAAA 60.278 40.000 0.00 0.00 0.00 2.44
1956 2822 5.948992 ACTTTATGTGAGAGAGGCAAAAC 57.051 39.130 0.00 0.00 0.00 2.43
1957 2823 5.376625 ACTTTATGTGAGAGAGGCAAAACA 58.623 37.500 0.00 0.00 0.00 2.83
1958 2824 5.827797 ACTTTATGTGAGAGAGGCAAAACAA 59.172 36.000 0.00 0.00 0.00 2.83
1959 2825 5.689383 TTATGTGAGAGAGGCAAAACAAC 57.311 39.130 0.00 0.00 0.00 3.32
1960 2826 3.281727 TGTGAGAGAGGCAAAACAACT 57.718 42.857 0.00 0.00 0.00 3.16
1961 2827 3.206150 TGTGAGAGAGGCAAAACAACTC 58.794 45.455 0.00 0.00 0.00 3.01
1962 2828 2.221981 GTGAGAGAGGCAAAACAACTCG 59.778 50.000 0.00 0.00 36.40 4.18
1963 2829 2.158957 TGAGAGAGGCAAAACAACTCGT 60.159 45.455 0.00 0.00 36.40 4.18
1964 2830 3.069016 TGAGAGAGGCAAAACAACTCGTA 59.931 43.478 0.00 0.00 36.40 3.43
1965 2831 3.654414 AGAGAGGCAAAACAACTCGTAG 58.346 45.455 0.00 0.00 36.40 3.51
1966 2832 2.143925 AGAGGCAAAACAACTCGTAGC 58.856 47.619 0.00 0.00 36.40 3.58
1967 2833 1.197036 GAGGCAAAACAACTCGTAGCC 59.803 52.381 0.00 0.00 39.32 3.93
1968 2834 0.948678 GGCAAAACAACTCGTAGCCA 59.051 50.000 0.00 0.00 39.03 4.75
1969 2835 1.335496 GGCAAAACAACTCGTAGCCAA 59.665 47.619 0.00 0.00 39.03 4.52
1970 2836 2.030274 GGCAAAACAACTCGTAGCCAAT 60.030 45.455 0.00 0.00 39.03 3.16
1971 2837 3.234386 GCAAAACAACTCGTAGCCAATC 58.766 45.455 0.00 0.00 0.00 2.67
1972 2838 3.304391 GCAAAACAACTCGTAGCCAATCA 60.304 43.478 0.00 0.00 0.00 2.57
1973 2839 4.791411 GCAAAACAACTCGTAGCCAATCAA 60.791 41.667 0.00 0.00 0.00 2.57
1974 2840 4.749245 AAACAACTCGTAGCCAATCAAG 57.251 40.909 0.00 0.00 0.00 3.02
1975 2841 3.402628 ACAACTCGTAGCCAATCAAGT 57.597 42.857 0.00 0.00 0.00 3.16
1976 2842 4.530710 ACAACTCGTAGCCAATCAAGTA 57.469 40.909 0.00 0.00 0.00 2.24
1977 2843 4.495422 ACAACTCGTAGCCAATCAAGTAG 58.505 43.478 0.00 0.00 0.00 2.57
1978 2844 4.021368 ACAACTCGTAGCCAATCAAGTAGT 60.021 41.667 0.00 0.00 0.00 2.73
1979 2845 4.803098 ACTCGTAGCCAATCAAGTAGTT 57.197 40.909 0.00 0.00 0.00 2.24
1980 2846 4.495422 ACTCGTAGCCAATCAAGTAGTTG 58.505 43.478 3.73 3.73 34.67 3.16
1981 2847 3.259064 TCGTAGCCAATCAAGTAGTTGC 58.741 45.455 5.35 0.00 33.23 4.17
1982 2848 2.351726 CGTAGCCAATCAAGTAGTTGCC 59.648 50.000 5.35 0.00 33.23 4.52
1983 2849 2.584835 AGCCAATCAAGTAGTTGCCA 57.415 45.000 5.35 0.00 33.23 4.92
1984 2850 2.875296 AGCCAATCAAGTAGTTGCCAA 58.125 42.857 5.35 0.00 33.23 4.52
1985 2851 3.434309 AGCCAATCAAGTAGTTGCCAAT 58.566 40.909 5.35 0.00 33.23 3.16
1986 2852 4.599041 AGCCAATCAAGTAGTTGCCAATA 58.401 39.130 5.35 0.00 33.23 1.90
1987 2853 5.203528 AGCCAATCAAGTAGTTGCCAATAT 58.796 37.500 5.35 0.00 33.23 1.28
1988 2854 5.658190 AGCCAATCAAGTAGTTGCCAATATT 59.342 36.000 5.35 0.00 33.23 1.28
1989 2855 6.155049 AGCCAATCAAGTAGTTGCCAATATTT 59.845 34.615 5.35 0.00 33.23 1.40
1990 2856 6.256321 GCCAATCAAGTAGTTGCCAATATTTG 59.744 38.462 5.35 0.00 33.23 2.32
2015 2881 3.910817 TGTCAAACATTGGCATGCC 57.089 47.368 30.54 30.54 40.96 4.40
2016 2882 1.046204 TGTCAAACATTGGCATGCCA 58.954 45.000 35.59 35.59 40.96 4.92
2034 2900 2.295885 CCAATTTTTGGCAGCAAACCA 58.704 42.857 0.00 0.00 45.17 3.67
2035 2901 2.686915 CCAATTTTTGGCAGCAAACCAA 59.313 40.909 0.00 1.35 45.17 3.67
2036 2902 3.318557 CCAATTTTTGGCAGCAAACCAAT 59.681 39.130 6.01 0.00 46.25 3.16
2037 2903 4.202131 CCAATTTTTGGCAGCAAACCAATT 60.202 37.500 6.01 0.00 46.25 2.32
2038 2904 5.009410 CCAATTTTTGGCAGCAAACCAATTA 59.991 36.000 6.01 0.00 46.25 1.40
2039 2905 6.294620 CCAATTTTTGGCAGCAAACCAATTAT 60.295 34.615 6.01 1.48 46.25 1.28
2040 2906 5.686159 TTTTTGGCAGCAAACCAATTATG 57.314 34.783 6.01 0.00 46.25 1.90
2041 2907 2.383368 TGGCAGCAAACCAATTATGC 57.617 45.000 0.00 0.00 40.34 3.14
2074 2982 1.281419 TTTCCATAGTTCCGGCCTCA 58.719 50.000 0.00 0.00 0.00 3.86
2075 2983 1.281419 TTCCATAGTTCCGGCCTCAA 58.719 50.000 0.00 0.00 0.00 3.02
2109 3017 2.571757 GCATGGACGACGTGGAGA 59.428 61.111 4.58 0.00 36.57 3.71
2142 3050 3.133365 AAGCTGCTGGAACCCCGTT 62.133 57.895 1.35 0.00 34.29 4.44
2186 3094 4.891627 TGCATATACACAATGGTTTCCG 57.108 40.909 0.00 0.00 0.00 4.30
2187 3095 4.265893 TGCATATACACAATGGTTTCCGT 58.734 39.130 0.00 0.00 0.00 4.69
2355 3944 1.668151 GACCTGTCGGACAAGGTGC 60.668 63.158 26.28 17.54 32.43 5.01
2659 7103 7.532682 TTCCAAAAGTTAACTGAACAATTGC 57.467 32.000 9.34 0.00 40.86 3.56
2851 7658 2.576317 GCAGACGACGCGGTCTAC 60.576 66.667 16.10 8.54 45.20 2.59
2883 7690 1.062047 GCGAGACATAGACGCGTCA 59.938 57.895 37.85 24.72 42.65 4.35
2884 7691 0.317103 GCGAGACATAGACGCGTCAT 60.317 55.000 37.85 25.71 42.65 3.06
2885 7692 1.070108 GCGAGACATAGACGCGTCATA 60.070 52.381 37.85 26.27 42.65 2.15
2886 7693 2.601504 GCGAGACATAGACGCGTCATAA 60.602 50.000 37.85 24.00 42.65 1.90
2889 7696 4.610680 CGAGACATAGACGCGTCATAATCA 60.611 45.833 37.85 17.17 34.48 2.57
2891 7698 5.394802 AGACATAGACGCGTCATAATCATC 58.605 41.667 37.85 24.05 34.48 2.92
3032 7957 0.909610 ATCCCTCTCGCCACCTTCAA 60.910 55.000 0.00 0.00 0.00 2.69
3090 8015 2.027751 GGCTATGAGGCCGTCGTC 59.972 66.667 0.00 0.00 42.82 4.20
3139 8067 1.003839 GACAAGTCCGGTGGCATCA 60.004 57.895 0.00 0.00 0.00 3.07
3150 8078 3.861797 GGCATCATCGACCCCCGT 61.862 66.667 0.00 0.00 39.75 5.28
3221 8158 7.169140 GCCATTTTTCGTTAGAAGTTGAAATGT 59.831 33.333 11.69 0.00 38.21 2.71
3295 8239 0.033601 AGGTGGTGCGAGAGATCTCT 60.034 55.000 25.39 25.39 43.78 3.10
3313 8822 1.996786 CTTACTCCGGAAGCGGCGTA 61.997 60.000 5.23 0.00 0.00 4.42
3320 8829 1.810030 GGAAGCGGCGTAAGAGTGG 60.810 63.158 9.37 0.00 43.02 4.00
3343 10009 1.975680 ACGGAGGACAACAAGGTGTAT 59.024 47.619 0.00 0.00 0.00 2.29
3383 10049 1.831652 CTCAACGAGCTTGGGGGTCT 61.832 60.000 5.79 0.00 40.01 3.85
3407 10073 9.797556 TCTTGCAATCAGATCTCATAAAATTTG 57.202 29.630 0.00 0.00 0.00 2.32
3590 10261 5.883115 TGTGTACACCAAGATCTTTGTCAAA 59.117 36.000 22.91 7.09 0.00 2.69
3680 10351 3.056465 GCTACTATGGAGTATGGCAGGTC 60.056 52.174 0.00 0.00 37.53 3.85
3765 10464 2.095059 AGTCTTGATGGAATTGTTGCGC 60.095 45.455 0.00 0.00 0.00 6.09
3766 10465 1.135717 TCTTGATGGAATTGTTGCGCG 60.136 47.619 0.00 0.00 0.00 6.86
3790 10496 0.905357 AGGAGTTTGAGGCGCAGTAT 59.095 50.000 10.83 0.00 0.00 2.12
3824 10530 1.745890 CTCTTGGTCACCGTCACCA 59.254 57.895 0.00 0.00 42.48 4.17
3909 10615 1.198094 TTGAGGAGCATGTTCCCCGA 61.198 55.000 23.58 10.46 38.02 5.14
3931 10637 2.571757 GATGTCCCTGACGCGACA 59.428 61.111 15.93 13.32 42.85 4.35
4035 10741 4.007644 CGACCAGCTCAGGGTGCA 62.008 66.667 0.00 0.00 39.19 4.57
4044 10750 2.125512 CAGGGTGCAGCGTACCTC 60.126 66.667 11.20 0.00 38.30 3.85
4046 10752 3.702048 GGGTGCAGCGTACCTCCA 61.702 66.667 10.24 0.00 38.30 3.86
4049 10755 0.887387 GGTGCAGCGTACCTCCAAAA 60.887 55.000 0.00 0.00 35.30 2.44
4050 10756 0.517316 GTGCAGCGTACCTCCAAAAG 59.483 55.000 0.00 0.00 0.00 2.27
4051 10757 0.107831 TGCAGCGTACCTCCAAAAGT 59.892 50.000 0.00 0.00 0.00 2.66
4052 10758 0.796927 GCAGCGTACCTCCAAAAGTC 59.203 55.000 0.00 0.00 0.00 3.01
4053 10759 1.439679 CAGCGTACCTCCAAAAGTCC 58.560 55.000 0.00 0.00 0.00 3.85
4058 10764 3.119955 GCGTACCTCCAAAAGTCCAAATC 60.120 47.826 0.00 0.00 0.00 2.17
4072 10778 4.079558 AGTCCAAATCATATTGTGCTCCCT 60.080 41.667 0.00 0.00 0.00 4.20
4088 10799 3.683847 GCTCCCTAATTGCTCATGTGACT 60.684 47.826 0.00 0.00 0.00 3.41
4113 10824 0.248621 GCGATTGCACCTTATGTGGC 60.249 55.000 0.00 0.00 45.55 5.01
4122 10833 1.285078 ACCTTATGTGGCTTTCCCCTC 59.715 52.381 0.00 0.00 0.00 4.30
4125 10836 0.255890 TATGTGGCTTTCCCCTCTGC 59.744 55.000 0.00 0.00 0.00 4.26
4177 10888 4.263572 CACCGGGGAGCACACCAA 62.264 66.667 6.32 0.00 40.12 3.67
4194 10905 0.447801 CAACGAGCACTACAATGGCC 59.552 55.000 0.00 0.00 0.00 5.36
4246 10961 2.993899 CGACGTCTTATGGCTTGTCTTT 59.006 45.455 14.70 0.00 0.00 2.52
4271 11028 6.588719 TTTTTAGCATGTCTTATGGCTTGT 57.411 33.333 0.00 0.00 37.79 3.16
4311 11209 7.976734 TGTTTTACTTTCAATTGTGGTAACCAG 59.023 33.333 5.13 0.00 32.34 4.00
4358 11261 9.618890 ATGCTTATGTGTATTATTCACTGTCTT 57.381 29.630 3.80 0.00 36.83 3.01
4390 11293 2.971660 TTGATTCGGCGGACATTCTA 57.028 45.000 7.21 0.00 0.00 2.10
4489 11392 9.388506 CATTTACAAACAGACTAATCCTCTGAT 57.611 33.333 2.47 0.00 37.90 2.90
4494 11397 5.923733 ACAGACTAATCCTCTGATCGTTT 57.076 39.130 2.47 0.00 37.90 3.60
4515 11418 1.202110 GCGAATGTGAAGCATGTCCTG 60.202 52.381 0.00 0.00 37.96 3.86
4520 11423 2.703416 TGTGAAGCATGTCCTGATGAC 58.297 47.619 0.00 0.00 44.72 3.06
4533 11436 1.345741 CTGATGACACTCTGTGGTGGT 59.654 52.381 2.72 0.00 41.09 4.16
4568 11471 6.288294 TGCTAACCATCGCTGTATTTATTCT 58.712 36.000 0.00 0.00 0.00 2.40
4602 11505 1.468054 GGGCTTTGCGTCATGAATGTC 60.468 52.381 0.00 0.00 0.00 3.06
4603 11506 1.527696 GCTTTGCGTCATGAATGTCG 58.472 50.000 0.00 0.00 41.13 4.35
4604 11507 1.128507 GCTTTGCGTCATGAATGTCGA 59.871 47.619 12.92 0.00 40.77 4.20
4605 11508 2.762472 CTTTGCGTCATGAATGTCGAC 58.238 47.619 9.11 9.11 40.77 4.20
4607 11510 2.931512 TGCGTCATGAATGTCGACTA 57.068 45.000 17.92 3.52 40.77 2.59
4609 11512 4.561735 TGCGTCATGAATGTCGACTATA 57.438 40.909 17.92 0.00 40.77 1.31
4611 11514 5.528870 TGCGTCATGAATGTCGACTATAAT 58.471 37.500 17.92 1.11 40.77 1.28
4612 11515 6.674066 TGCGTCATGAATGTCGACTATAATA 58.326 36.000 17.92 0.00 40.77 0.98
4739 11648 7.816945 ATTCATGCTAAACCATTTCTTTTCG 57.183 32.000 0.00 0.00 0.00 3.46
4756 11665 4.720649 TTTCGGATTGTTGGTTGTTTCA 57.279 36.364 0.00 0.00 0.00 2.69
4904 11814 1.076533 CATCGTGTGACGCCTACACC 61.077 60.000 10.58 0.00 44.18 4.16
4947 11857 4.385447 CGTGTGGCACCAAATTAAATTCAG 59.615 41.667 16.26 0.00 0.00 3.02
4977 11887 3.994392 ACTCACGCGTAGACATGAAAAAT 59.006 39.130 13.44 0.00 0.00 1.82
4979 11889 5.810587 ACTCACGCGTAGACATGAAAAATAT 59.189 36.000 13.44 0.00 0.00 1.28
4986 11896 7.977201 CGTAGACATGAAAAATATACGCATG 57.023 36.000 0.00 0.00 41.44 4.06
4995 11905 7.980062 TGAAAAATATACGCATGCTTGTAGAA 58.020 30.769 17.13 4.81 0.00 2.10
4996 11906 8.620416 TGAAAAATATACGCATGCTTGTAGAAT 58.380 29.630 17.13 6.80 0.00 2.40
5006 11916 6.183359 CGCATGCTTGTAGAATTATACGGTAG 60.183 42.308 17.13 4.61 0.00 3.18
5007 11917 6.866770 GCATGCTTGTAGAATTATACGGTAGA 59.133 38.462 11.37 0.00 0.00 2.59
5008 11918 7.384115 GCATGCTTGTAGAATTATACGGTAGAA 59.616 37.037 11.37 0.00 0.00 2.10
5009 11919 9.424319 CATGCTTGTAGAATTATACGGTAGAAT 57.576 33.333 5.81 2.30 0.00 2.40
5010 11920 8.812147 TGCTTGTAGAATTATACGGTAGAATG 57.188 34.615 8.64 0.00 0.00 2.67
5032 11942 3.409851 AATGTACATCTTGCATGTGCG 57.590 42.857 9.23 0.00 45.83 5.34
5064 11974 4.116238 GTCTTCGCATAAGCTAAGCTCTT 58.884 43.478 0.00 0.00 41.76 2.85
5073 11983 0.093705 GCTAAGCTCTTGCGTGAACG 59.906 55.000 0.00 0.00 45.42 3.95
5101 12011 4.983215 TTGTATAGCAAATACGGCATCG 57.017 40.909 5.17 0.00 36.93 3.84
5125 12035 3.142951 TGTGGTAAATCAGTTGTTCGGG 58.857 45.455 0.00 0.00 0.00 5.14
5126 12036 2.486592 GTGGTAAATCAGTTGTTCGGGG 59.513 50.000 0.00 0.00 0.00 5.73
5144 12054 3.316868 CGGGGTGTTATTTGTGTCTTTGT 59.683 43.478 0.00 0.00 0.00 2.83
5155 12065 7.624360 ATTTGTGTCTTTGTTTGTCTAGTCA 57.376 32.000 0.00 0.00 0.00 3.41
5204 12114 6.073440 GGACTGTTAATGTTCGCTAAAGTTGA 60.073 38.462 0.00 0.00 0.00 3.18
5234 12145 1.346068 TGTGGATCATGTCACGACCAA 59.654 47.619 0.00 0.00 36.74 3.67
5235 12146 2.027285 TGTGGATCATGTCACGACCAAT 60.027 45.455 0.00 0.00 36.74 3.16
5236 12147 3.009723 GTGGATCATGTCACGACCAATT 58.990 45.455 0.00 0.00 0.00 2.32
5249 12160 3.880490 ACGACCAATTAGAAACACTTGCA 59.120 39.130 0.00 0.00 0.00 4.08
5251 12162 4.024048 CGACCAATTAGAAACACTTGCACT 60.024 41.667 0.00 0.00 0.00 4.40
5253 12164 6.560253 ACCAATTAGAAACACTTGCACTAG 57.440 37.500 0.00 0.00 0.00 2.57
5288 12199 6.482973 AGGAAAATCGTGCAATGACAAAATTT 59.517 30.769 0.00 0.00 32.58 1.82
5303 12214 9.835389 ATGACAAAATTTCAAGGAAGAAAATGA 57.165 25.926 0.00 0.00 40.54 2.57
5304 12215 9.664332 TGACAAAATTTCAAGGAAGAAAATGAA 57.336 25.926 0.00 0.00 40.54 2.57
5309 12220 9.685276 AAATTTCAAGGAAGAAAATGAAAACCT 57.315 25.926 4.17 0.00 42.89 3.50
5310 12221 9.685276 AATTTCAAGGAAGAAAATGAAAACCTT 57.315 25.926 4.17 0.00 42.89 3.50
5313 12224 7.848223 CAAGGAAGAAAATGAAAACCTTGTT 57.152 32.000 0.00 0.00 44.15 2.83
5314 12225 8.267620 CAAGGAAGAAAATGAAAACCTTGTTT 57.732 30.769 0.00 0.00 44.15 2.83
5315 12226 9.377312 CAAGGAAGAAAATGAAAACCTTGTTTA 57.623 29.630 0.00 0.00 44.15 2.01
5316 12227 9.599866 AAGGAAGAAAATGAAAACCTTGTTTAG 57.400 29.630 0.00 0.00 35.39 1.85
5317 12228 8.977412 AGGAAGAAAATGAAAACCTTGTTTAGA 58.023 29.630 0.00 0.00 0.00 2.10
5318 12229 9.594478 GGAAGAAAATGAAAACCTTGTTTAGAA 57.406 29.630 0.00 0.00 0.00 2.10
5321 12232 9.378551 AGAAAATGAAAACCTTGTTTAGAAACC 57.621 29.630 2.80 0.00 38.11 3.27
5322 12233 7.764695 AAATGAAAACCTTGTTTAGAAACCG 57.235 32.000 2.80 0.00 38.11 4.44
5323 12234 6.702716 ATGAAAACCTTGTTTAGAAACCGA 57.297 33.333 2.80 0.00 38.11 4.69
5324 12235 5.882553 TGAAAACCTTGTTTAGAAACCGAC 58.117 37.500 2.80 0.00 38.11 4.79
5325 12236 5.648960 TGAAAACCTTGTTTAGAAACCGACT 59.351 36.000 2.80 0.00 38.11 4.18
5326 12237 6.822676 TGAAAACCTTGTTTAGAAACCGACTA 59.177 34.615 2.80 0.00 38.11 2.59
5327 12238 6.856135 AAACCTTGTTTAGAAACCGACTAG 57.144 37.500 2.80 0.00 38.11 2.57
5328 12239 5.796424 ACCTTGTTTAGAAACCGACTAGA 57.204 39.130 0.00 0.00 38.11 2.43
5329 12240 6.165700 ACCTTGTTTAGAAACCGACTAGAA 57.834 37.500 0.00 0.00 38.11 2.10
5330 12241 6.221659 ACCTTGTTTAGAAACCGACTAGAAG 58.778 40.000 0.00 0.00 38.11 2.85
5331 12242 5.638234 CCTTGTTTAGAAACCGACTAGAAGG 59.362 44.000 0.00 1.27 38.11 3.46
5332 12243 5.796424 TGTTTAGAAACCGACTAGAAGGT 57.204 39.130 0.00 2.00 43.68 3.50
5338 12249 2.486472 ACCGACTAGAAGGTTCTCGA 57.514 50.000 0.00 0.00 37.49 4.04
5339 12250 2.787994 ACCGACTAGAAGGTTCTCGAA 58.212 47.619 0.00 0.00 37.49 3.71
5340 12251 3.152341 ACCGACTAGAAGGTTCTCGAAA 58.848 45.455 0.00 0.00 37.49 3.46
5341 12252 3.057666 ACCGACTAGAAGGTTCTCGAAAC 60.058 47.826 0.00 0.00 37.49 2.78
5342 12253 3.162068 CGACTAGAAGGTTCTCGAAACG 58.838 50.000 0.00 0.00 38.70 3.60
5343 12254 3.500014 GACTAGAAGGTTCTCGAAACGG 58.500 50.000 0.00 0.00 38.70 4.44
5344 12255 2.230750 ACTAGAAGGTTCTCGAAACGGG 59.769 50.000 0.00 0.00 38.70 5.28
5345 12256 1.046204 AGAAGGTTCTCGAAACGGGT 58.954 50.000 0.00 0.00 29.94 5.28
5346 12257 2.242043 AGAAGGTTCTCGAAACGGGTA 58.758 47.619 0.00 0.00 29.94 3.69
5347 12258 2.629617 AGAAGGTTCTCGAAACGGGTAA 59.370 45.455 0.00 0.00 29.94 2.85
5348 12259 3.070015 AGAAGGTTCTCGAAACGGGTAAA 59.930 43.478 0.00 0.00 29.94 2.01
5349 12260 3.473923 AGGTTCTCGAAACGGGTAAAA 57.526 42.857 0.00 0.00 32.14 1.52
5350 12261 3.807553 AGGTTCTCGAAACGGGTAAAAA 58.192 40.909 0.00 0.00 32.14 1.94
5351 12262 3.561310 AGGTTCTCGAAACGGGTAAAAAC 59.439 43.478 0.00 0.00 32.14 2.43
5352 12263 3.561310 GGTTCTCGAAACGGGTAAAAACT 59.439 43.478 0.00 0.00 0.00 2.66
5353 12264 4.319046 GGTTCTCGAAACGGGTAAAAACTC 60.319 45.833 0.00 0.00 0.00 3.01
5354 12265 3.052036 TCTCGAAACGGGTAAAAACTCG 58.948 45.455 0.00 0.00 0.00 4.18
5355 12266 2.134346 TCGAAACGGGTAAAAACTCGG 58.866 47.619 2.57 0.00 0.00 4.63
5356 12267 1.195222 CGAAACGGGTAAAAACTCGGG 59.805 52.381 2.57 0.00 0.00 5.14
5357 12268 0.953727 AAACGGGTAAAAACTCGGGC 59.046 50.000 2.57 0.00 0.00 6.13
5358 12269 0.109153 AACGGGTAAAAACTCGGGCT 59.891 50.000 2.57 0.00 0.00 5.19
5359 12270 0.604511 ACGGGTAAAAACTCGGGCTG 60.605 55.000 2.57 0.00 0.00 4.85
5360 12271 1.303091 CGGGTAAAAACTCGGGCTGG 61.303 60.000 0.00 0.00 0.00 4.85
5361 12272 0.037160 GGGTAAAAACTCGGGCTGGA 59.963 55.000 0.00 0.00 0.00 3.86
5362 12273 1.546099 GGGTAAAAACTCGGGCTGGAA 60.546 52.381 0.00 0.00 0.00 3.53
5363 12274 1.538512 GGTAAAAACTCGGGCTGGAAC 59.461 52.381 0.00 0.00 0.00 3.62
5364 12275 1.538512 GTAAAAACTCGGGCTGGAACC 59.461 52.381 0.00 0.00 0.00 3.62
5365 12276 0.106419 AAAAACTCGGGCTGGAACCA 60.106 50.000 0.00 0.00 0.00 3.67
5366 12277 0.112412 AAAACTCGGGCTGGAACCAT 59.888 50.000 0.00 0.00 0.00 3.55
5367 12278 0.322546 AAACTCGGGCTGGAACCATC 60.323 55.000 0.00 0.00 0.00 3.51
5368 12279 2.190578 CTCGGGCTGGAACCATCC 59.809 66.667 5.27 5.27 46.76 3.51
5369 12280 2.285368 TCGGGCTGGAACCATCCT 60.285 61.111 12.51 0.00 46.70 3.24
5370 12281 2.124570 CGGGCTGGAACCATCCTG 60.125 66.667 12.51 10.28 46.70 3.86
5371 12282 2.669133 CGGGCTGGAACCATCCTGA 61.669 63.158 15.14 0.00 46.70 3.86
5372 12283 1.691219 GGGCTGGAACCATCCTGAA 59.309 57.895 12.51 0.00 46.70 3.02
5373 12284 0.681243 GGGCTGGAACCATCCTGAAC 60.681 60.000 12.51 0.00 46.70 3.18
5374 12285 1.026718 GGCTGGAACCATCCTGAACG 61.027 60.000 6.49 0.00 46.70 3.95
5375 12286 0.321653 GCTGGAACCATCCTGAACGT 60.322 55.000 6.00 0.00 46.70 3.99
5376 12287 1.882352 GCTGGAACCATCCTGAACGTT 60.882 52.381 0.00 0.00 46.70 3.99
5377 12288 2.076863 CTGGAACCATCCTGAACGTTC 58.923 52.381 21.42 21.42 46.70 3.95
5378 12289 1.697432 TGGAACCATCCTGAACGTTCT 59.303 47.619 27.32 5.89 46.70 3.01
5379 12290 2.105821 TGGAACCATCCTGAACGTTCTT 59.894 45.455 27.32 12.54 46.70 2.52
5380 12291 2.742589 GGAACCATCCTGAACGTTCTTC 59.257 50.000 27.32 19.37 42.93 2.87
5381 12292 2.080286 ACCATCCTGAACGTTCTTCG 57.920 50.000 27.32 15.74 46.00 3.79
5390 12301 3.147294 CGTTCTTCGTGACCAGCG 58.853 61.111 0.00 0.00 34.52 5.18
5391 12302 1.660575 CGTTCTTCGTGACCAGCGT 60.661 57.895 0.00 0.00 34.52 5.07
5392 12303 1.606350 CGTTCTTCGTGACCAGCGTC 61.606 60.000 0.00 0.00 39.66 5.19
5393 12304 1.006571 TTCTTCGTGACCAGCGTCC 60.007 57.895 0.00 0.00 38.32 4.79
5394 12305 1.740332 TTCTTCGTGACCAGCGTCCA 61.740 55.000 0.00 0.00 38.32 4.02
5395 12306 1.734477 CTTCGTGACCAGCGTCCAG 60.734 63.158 0.00 0.00 38.32 3.86
5396 12307 2.421877 CTTCGTGACCAGCGTCCAGT 62.422 60.000 0.00 0.00 38.32 4.00
5397 12308 2.023414 TTCGTGACCAGCGTCCAGTT 62.023 55.000 0.00 0.00 38.32 3.16
5398 12309 1.174078 TCGTGACCAGCGTCCAGTTA 61.174 55.000 0.00 0.00 38.32 2.24
5399 12310 0.108804 CGTGACCAGCGTCCAGTTAT 60.109 55.000 0.00 0.00 38.32 1.89
5400 12311 1.133598 CGTGACCAGCGTCCAGTTATA 59.866 52.381 0.00 0.00 38.32 0.98
5401 12312 2.794981 CGTGACCAGCGTCCAGTTATAG 60.795 54.545 0.00 0.00 38.32 1.31
5402 12313 2.426024 GTGACCAGCGTCCAGTTATAGA 59.574 50.000 0.00 0.00 38.32 1.98
5403 12314 3.093814 TGACCAGCGTCCAGTTATAGAA 58.906 45.455 0.00 0.00 38.32 2.10
5404 12315 3.130516 TGACCAGCGTCCAGTTATAGAAG 59.869 47.826 0.00 0.00 38.32 2.85
5405 12316 3.097614 ACCAGCGTCCAGTTATAGAAGT 58.902 45.455 0.00 0.00 0.00 3.01
5406 12317 3.119101 ACCAGCGTCCAGTTATAGAAGTG 60.119 47.826 0.00 0.00 35.98 3.16
5407 12318 3.130516 CCAGCGTCCAGTTATAGAAGTGA 59.869 47.826 6.49 0.00 38.12 3.41
5408 12319 4.202161 CCAGCGTCCAGTTATAGAAGTGAT 60.202 45.833 6.49 0.00 38.12 3.06
5409 12320 5.009710 CCAGCGTCCAGTTATAGAAGTGATA 59.990 44.000 6.49 0.00 38.12 2.15
5410 12321 6.461092 CCAGCGTCCAGTTATAGAAGTGATAA 60.461 42.308 6.49 0.00 38.12 1.75
5411 12322 6.978659 CAGCGTCCAGTTATAGAAGTGATAAA 59.021 38.462 6.49 0.00 38.12 1.40
5412 12323 7.168302 CAGCGTCCAGTTATAGAAGTGATAAAG 59.832 40.741 6.49 0.00 38.12 1.85
5413 12324 6.074249 GCGTCCAGTTATAGAAGTGATAAAGC 60.074 42.308 6.49 2.73 38.12 3.51
5414 12325 6.142480 CGTCCAGTTATAGAAGTGATAAAGCG 59.858 42.308 6.49 0.00 38.12 4.68
5415 12326 6.421202 GTCCAGTTATAGAAGTGATAAAGCGG 59.579 42.308 6.49 0.00 38.12 5.52
5416 12327 5.177696 CCAGTTATAGAAGTGATAAAGCGGC 59.822 44.000 6.49 0.00 38.12 6.53
5417 12328 5.177696 CAGTTATAGAAGTGATAAAGCGGCC 59.822 44.000 0.00 0.00 38.12 6.13
5418 12329 5.070580 AGTTATAGAAGTGATAAAGCGGCCT 59.929 40.000 0.00 0.00 0.00 5.19
5419 12330 2.029838 AGAAGTGATAAAGCGGCCTG 57.970 50.000 0.00 0.00 0.00 4.85
5420 12331 0.378610 GAAGTGATAAAGCGGCCTGC 59.621 55.000 11.02 11.02 46.98 4.85
5429 12340 4.166011 GCGGCCTGCGCAGTTAAG 62.166 66.667 33.75 22.30 36.38 1.85
5430 12341 2.434185 CGGCCTGCGCAGTTAAGA 60.434 61.111 33.75 0.00 36.38 2.10
5431 12342 2.032634 CGGCCTGCGCAGTTAAGAA 61.033 57.895 33.75 0.00 36.38 2.52
5432 12343 1.502190 GGCCTGCGCAGTTAAGAAC 59.498 57.895 33.75 14.47 36.38 3.01
5433 12344 1.132640 GCCTGCGCAGTTAAGAACG 59.867 57.895 33.75 17.88 36.23 3.95
5438 12349 2.431539 CGCAGTTAAGAACGCTCGT 58.568 52.632 0.00 0.00 36.23 4.18
5439 12350 0.362512 CGCAGTTAAGAACGCTCGTC 59.637 55.000 0.00 0.00 36.23 4.20
5440 12351 1.699343 GCAGTTAAGAACGCTCGTCT 58.301 50.000 0.00 0.00 36.23 4.18
5441 12352 1.387084 GCAGTTAAGAACGCTCGTCTG 59.613 52.381 0.00 0.00 36.23 3.51
5442 12353 1.986378 CAGTTAAGAACGCTCGTCTGG 59.014 52.381 0.00 0.00 36.23 3.86
5443 12354 1.884579 AGTTAAGAACGCTCGTCTGGA 59.115 47.619 0.00 0.00 36.23 3.86
5444 12355 2.492484 AGTTAAGAACGCTCGTCTGGAT 59.508 45.455 0.00 0.00 36.23 3.41
5445 12356 2.846039 TAAGAACGCTCGTCTGGATC 57.154 50.000 0.00 0.00 0.00 3.36
5446 12357 0.173708 AAGAACGCTCGTCTGGATCC 59.826 55.000 4.20 4.20 0.00 3.36
5447 12358 0.681564 AGAACGCTCGTCTGGATCCT 60.682 55.000 14.23 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.947612 TTCCACGTAGATACTCCCTCT 57.052 47.619 0.00 0.00 0.00 3.69
115 116 3.273434 GCTTGCATGATGAGGTGACTAA 58.727 45.455 3.33 0.00 44.43 2.24
287 330 7.169645 CCAGGAATTGGTTGCAATATATTTTCG 59.830 37.037 0.59 0.00 42.41 3.46
383 426 3.984508 ACTAGCATTTCTCATGCATGC 57.015 42.857 22.25 11.82 46.77 4.06
441 484 2.037902 CGTGGGGTGGCATACATATGTA 59.962 50.000 17.65 17.65 36.11 2.29
556 599 8.474025 AGTTGTTGGAATTTAAACATGAGAACA 58.526 29.630 0.00 0.00 36.26 3.18
557 600 8.871686 AGTTGTTGGAATTTAAACATGAGAAC 57.128 30.769 0.00 3.90 36.26 3.01
726 955 1.068333 TGCGTTCTACTACGGACCAAC 60.068 52.381 0.00 0.00 41.65 3.77
730 959 3.305361 GGAATTTGCGTTCTACTACGGAC 59.695 47.826 0.00 0.00 41.58 4.79
758 987 6.872585 ATTGCTAGGGATTGGATTTTCAAA 57.127 33.333 0.00 0.00 0.00 2.69
805 1034 2.488545 TGTACGAGTTGAGGCTCTCTTC 59.511 50.000 16.72 9.03 33.55 2.87
922 1155 5.709631 TCCTCTCTGCTTCATACTAGCTATG 59.290 44.000 0.00 0.00 39.38 2.23
951 1184 1.377202 CGCTGGTTAGTGGGCACAT 60.377 57.895 0.00 0.00 0.00 3.21
962 1195 2.436646 CGGATGAAGGCGCTGGTT 60.437 61.111 7.64 0.00 0.00 3.67
963 1196 4.473520 CCGGATGAAGGCGCTGGT 62.474 66.667 7.64 0.00 0.00 4.00
1451 1784 1.005037 CCTGTAGACGTTGCTGGCA 60.005 57.895 0.00 0.00 0.00 4.92
1468 1801 3.825014 TGACAGGCGTATATACTTCTCCC 59.175 47.826 11.05 3.94 0.00 4.30
1489 1825 7.922505 TTTTCGTGGTACAGAAATTCATTTG 57.077 32.000 9.97 0.00 41.80 2.32
1548 1884 3.238441 TGCAAACAACGTCAACTCAAAC 58.762 40.909 0.00 0.00 0.00 2.93
1558 1894 2.948979 TCTGAAAGGATGCAAACAACGT 59.051 40.909 0.00 0.00 0.00 3.99
1807 2665 5.278315 GGGCACGTAGTTTCTTTTTCATCTT 60.278 40.000 0.00 0.00 41.61 2.40
1896 2762 4.442706 AGTCTCGGTATTGCCAATAGTTG 58.557 43.478 0.00 0.00 36.97 3.16
1897 2763 4.755266 AGTCTCGGTATTGCCAATAGTT 57.245 40.909 0.00 0.00 36.97 2.24
1898 2764 4.442706 CAAGTCTCGGTATTGCCAATAGT 58.557 43.478 0.00 0.00 36.97 2.12
1899 2765 3.248602 GCAAGTCTCGGTATTGCCAATAG 59.751 47.826 0.00 0.00 42.70 1.73
1900 2766 3.202906 GCAAGTCTCGGTATTGCCAATA 58.797 45.455 0.00 0.00 42.70 1.90
1901 2767 2.017049 GCAAGTCTCGGTATTGCCAAT 58.983 47.619 0.00 0.00 42.70 3.16
1902 2768 1.448985 GCAAGTCTCGGTATTGCCAA 58.551 50.000 0.00 0.00 42.70 4.52
1903 2769 3.153024 GCAAGTCTCGGTATTGCCA 57.847 52.632 0.00 0.00 42.70 4.92
1905 2771 1.130561 GTTGGCAAGTCTCGGTATTGC 59.869 52.381 0.00 0.62 46.67 3.56
1906 2772 2.699954 AGTTGGCAAGTCTCGGTATTG 58.300 47.619 0.00 0.00 0.00 1.90
1907 2773 4.755266 ATAGTTGGCAAGTCTCGGTATT 57.245 40.909 11.55 0.00 0.00 1.89
1908 2774 4.442706 CAATAGTTGGCAAGTCTCGGTAT 58.557 43.478 11.55 0.00 0.00 2.73
1909 2775 3.369052 CCAATAGTTGGCAAGTCTCGGTA 60.369 47.826 11.55 0.00 45.17 4.02
1910 2776 2.615493 CCAATAGTTGGCAAGTCTCGGT 60.615 50.000 11.55 0.00 45.17 4.69
1911 2777 2.009774 CCAATAGTTGGCAAGTCTCGG 58.990 52.381 11.55 6.51 45.17 4.63
1922 2788 7.119699 TCTCTCACATAAAGTTGCCAATAGTTG 59.880 37.037 0.00 0.00 0.00 3.16
1923 2789 7.168219 TCTCTCACATAAAGTTGCCAATAGTT 58.832 34.615 0.00 0.00 0.00 2.24
1924 2790 6.711277 TCTCTCACATAAAGTTGCCAATAGT 58.289 36.000 0.00 0.00 0.00 2.12
1925 2791 6.259608 CCTCTCTCACATAAAGTTGCCAATAG 59.740 42.308 0.00 0.00 0.00 1.73
1926 2792 6.115446 CCTCTCTCACATAAAGTTGCCAATA 58.885 40.000 0.00 0.00 0.00 1.90
1927 2793 4.946157 CCTCTCTCACATAAAGTTGCCAAT 59.054 41.667 0.00 0.00 0.00 3.16
1928 2794 4.326826 CCTCTCTCACATAAAGTTGCCAA 58.673 43.478 0.00 0.00 0.00 4.52
1929 2795 3.869912 GCCTCTCTCACATAAAGTTGCCA 60.870 47.826 0.00 0.00 0.00 4.92
1930 2796 2.680339 GCCTCTCTCACATAAAGTTGCC 59.320 50.000 0.00 0.00 0.00 4.52
1931 2797 3.338249 TGCCTCTCTCACATAAAGTTGC 58.662 45.455 0.00 0.00 0.00 4.17
1932 2798 5.947228 TTTGCCTCTCTCACATAAAGTTG 57.053 39.130 0.00 0.00 0.00 3.16
1933 2799 5.827797 TGTTTTGCCTCTCTCACATAAAGTT 59.172 36.000 0.00 0.00 0.00 2.66
1934 2800 5.376625 TGTTTTGCCTCTCTCACATAAAGT 58.623 37.500 0.00 0.00 0.00 2.66
1935 2801 5.947228 TGTTTTGCCTCTCTCACATAAAG 57.053 39.130 0.00 0.00 0.00 1.85
1936 2802 5.827797 AGTTGTTTTGCCTCTCTCACATAAA 59.172 36.000 0.00 0.00 0.00 1.40
1937 2803 5.376625 AGTTGTTTTGCCTCTCTCACATAA 58.623 37.500 0.00 0.00 0.00 1.90
1938 2804 4.973168 AGTTGTTTTGCCTCTCTCACATA 58.027 39.130 0.00 0.00 0.00 2.29
1939 2805 3.817647 GAGTTGTTTTGCCTCTCTCACAT 59.182 43.478 0.00 0.00 0.00 3.21
1940 2806 3.206150 GAGTTGTTTTGCCTCTCTCACA 58.794 45.455 0.00 0.00 0.00 3.58
1941 2807 2.221981 CGAGTTGTTTTGCCTCTCTCAC 59.778 50.000 0.00 0.00 0.00 3.51
1942 2808 2.158957 ACGAGTTGTTTTGCCTCTCTCA 60.159 45.455 0.00 0.00 0.00 3.27
1943 2809 2.484889 ACGAGTTGTTTTGCCTCTCTC 58.515 47.619 0.00 0.00 0.00 3.20
1944 2810 2.622064 ACGAGTTGTTTTGCCTCTCT 57.378 45.000 0.00 0.00 0.00 3.10
1945 2811 2.157863 GCTACGAGTTGTTTTGCCTCTC 59.842 50.000 0.00 0.00 0.00 3.20
1946 2812 2.143925 GCTACGAGTTGTTTTGCCTCT 58.856 47.619 0.00 0.00 0.00 3.69
1947 2813 1.197036 GGCTACGAGTTGTTTTGCCTC 59.803 52.381 12.10 0.00 37.31 4.70
1948 2814 1.235724 GGCTACGAGTTGTTTTGCCT 58.764 50.000 12.10 0.00 37.31 4.75
1949 2815 0.948678 TGGCTACGAGTTGTTTTGCC 59.051 50.000 12.35 12.35 39.28 4.52
1950 2816 2.766970 TTGGCTACGAGTTGTTTTGC 57.233 45.000 0.00 0.00 0.00 3.68
1951 2817 4.481930 TGATTGGCTACGAGTTGTTTTG 57.518 40.909 0.00 0.00 0.00 2.44
1952 2818 4.578928 ACTTGATTGGCTACGAGTTGTTTT 59.421 37.500 0.00 0.00 0.00 2.43
1953 2819 4.134563 ACTTGATTGGCTACGAGTTGTTT 58.865 39.130 0.00 0.00 0.00 2.83
1954 2820 3.740115 ACTTGATTGGCTACGAGTTGTT 58.260 40.909 0.00 0.00 0.00 2.83
1955 2821 3.402628 ACTTGATTGGCTACGAGTTGT 57.597 42.857 0.00 0.00 0.00 3.32
1956 2822 4.495422 ACTACTTGATTGGCTACGAGTTG 58.505 43.478 0.00 0.00 33.49 3.16
1957 2823 4.803098 ACTACTTGATTGGCTACGAGTT 57.197 40.909 0.00 0.00 33.49 3.01
1958 2824 4.495422 CAACTACTTGATTGGCTACGAGT 58.505 43.478 0.00 0.00 35.33 4.18
1959 2825 3.307242 GCAACTACTTGATTGGCTACGAG 59.693 47.826 0.00 0.00 0.00 4.18
1960 2826 3.259064 GCAACTACTTGATTGGCTACGA 58.741 45.455 0.00 0.00 0.00 3.43
1961 2827 2.351726 GGCAACTACTTGATTGGCTACG 59.648 50.000 3.53 0.00 45.32 3.51
1966 2832 6.757947 CCAAATATTGGCAACTACTTGATTGG 59.242 38.462 0.00 5.63 45.17 3.16
1967 2833 7.760131 CCAAATATTGGCAACTACTTGATTG 57.240 36.000 0.00 0.23 45.17 2.67
1981 2847 6.372103 ATGTTTGACATTGTGCCAAATATTGG 59.628 34.615 4.74 4.74 44.45 3.16
1982 2848 6.782298 TGTTTGACATTGTGCCAAATATTG 57.218 33.333 6.86 0.00 33.17 1.90
1983 2849 7.982761 AATGTTTGACATTGTGCCAAATATT 57.017 28.000 14.65 14.65 46.18 1.28
1996 2862 1.624312 TGGCATGCCAATGTTTGACAT 59.376 42.857 36.95 0.00 44.12 3.06
1997 2863 1.046204 TGGCATGCCAATGTTTGACA 58.954 45.000 36.95 9.68 44.12 3.58
1998 2864 3.910817 TGGCATGCCAATGTTTGAC 57.089 47.368 36.95 6.63 44.12 3.18
2021 2887 3.617045 GAGCATAATTGGTTTGCTGCCAA 60.617 43.478 10.49 9.04 46.21 4.52
2022 2888 1.901159 AGCATAATTGGTTTGCTGCCA 59.099 42.857 0.00 0.00 44.63 4.92
2023 2889 2.167075 AGAGCATAATTGGTTTGCTGCC 59.833 45.455 10.49 0.70 46.21 4.85
2024 2890 3.515330 AGAGCATAATTGGTTTGCTGC 57.485 42.857 10.49 0.00 46.21 5.25
2025 2891 5.565592 TGTAGAGCATAATTGGTTTGCTG 57.434 39.130 10.49 0.00 46.21 4.41
2027 2893 7.545265 TGAAAATGTAGAGCATAATTGGTTTGC 59.455 33.333 0.00 0.00 36.67 3.68
2028 2894 8.984891 TGAAAATGTAGAGCATAATTGGTTTG 57.015 30.769 0.00 0.00 36.67 2.93
2038 2904 9.193806 ACTATGGAAAATGAAAATGTAGAGCAT 57.806 29.630 0.00 0.00 40.03 3.79
2039 2905 8.579850 ACTATGGAAAATGAAAATGTAGAGCA 57.420 30.769 0.00 0.00 0.00 4.26
2040 2906 9.508567 GAACTATGGAAAATGAAAATGTAGAGC 57.491 33.333 0.00 0.00 0.00 4.09
2042 2908 8.673711 CGGAACTATGGAAAATGAAAATGTAGA 58.326 33.333 0.00 0.00 0.00 2.59
2074 2982 1.211969 CGTGGACGACGTGGAGATT 59.788 57.895 4.58 0.00 43.50 2.40
2075 2983 2.875485 CGTGGACGACGTGGAGAT 59.125 61.111 4.58 0.00 43.50 2.75
2092 3000 1.517257 CTCTCCACGTCGTCCATGC 60.517 63.158 0.00 0.00 0.00 4.06
2105 3013 4.123506 GCTTGTGTAAAGGCTATCTCTCC 58.876 47.826 0.00 0.00 0.00 3.71
2109 3017 3.054802 AGCAGCTTGTGTAAAGGCTATCT 60.055 43.478 0.00 0.00 33.43 1.98
2142 3050 5.975988 ATATAGACAGCAAAGAGGGGAAA 57.024 39.130 0.00 0.00 0.00 3.13
2186 3094 1.221293 AGCATCTCCAGCAGCTCAC 59.779 57.895 0.00 0.00 30.05 3.51
2187 3095 3.723245 AGCATCTCCAGCAGCTCA 58.277 55.556 0.00 0.00 30.05 4.26
2280 3732 4.196193 CCACCTCTGTGAAGTTTGTACAA 58.804 43.478 3.59 3.59 45.76 2.41
2355 3944 4.082523 TTCCTCGCCGCCCTCTTG 62.083 66.667 0.00 0.00 0.00 3.02
2370 3959 1.168407 TGCAGCTTGGCAGAGTGTTC 61.168 55.000 0.00 0.00 39.25 3.18
2790 7597 2.092374 CATGGTCATGTCACGCTGG 58.908 57.895 2.97 0.00 34.23 4.85
2831 7638 4.702081 GACCGCGTCGTCTGCACT 62.702 66.667 4.92 0.00 0.00 4.40
2851 7658 1.220529 TCTCGCTTTGTGCAAGACAG 58.779 50.000 0.00 0.00 43.06 3.51
2883 7690 6.114187 ACACACATACGGATGGATGATTAT 57.886 37.500 17.60 0.00 37.39 1.28
2884 7691 5.069781 TGACACACATACGGATGGATGATTA 59.930 40.000 17.60 3.63 37.39 1.75
2885 7692 4.141733 TGACACACATACGGATGGATGATT 60.142 41.667 17.60 0.00 37.39 2.57
2886 7693 3.387699 TGACACACATACGGATGGATGAT 59.612 43.478 17.60 4.81 37.39 2.45
2889 7696 2.483714 GCTGACACACATACGGATGGAT 60.484 50.000 13.36 0.00 37.39 3.41
2891 7698 1.290203 GCTGACACACATACGGATGG 58.710 55.000 13.36 3.50 37.39 3.51
3090 8015 3.376935 CTGGCCAGCGAGGTGGTAG 62.377 68.421 22.33 15.42 40.09 3.18
3134 8062 2.280186 GACGGGGGTCGATGATGC 60.280 66.667 0.00 0.00 42.43 3.91
3139 8067 3.461773 CTGCAGACGGGGGTCGAT 61.462 66.667 8.42 0.00 42.43 3.59
3150 8078 0.181114 ACACCTTGTTGAGCTGCAGA 59.819 50.000 20.43 0.00 0.00 4.26
3313 8822 0.112606 TGTCCTCCGTCTCCACTCTT 59.887 55.000 0.00 0.00 0.00 2.85
3320 8829 0.680061 ACCTTGTTGTCCTCCGTCTC 59.320 55.000 0.00 0.00 0.00 3.36
3343 10009 4.290093 AGACCATGACATAGTCTGCCTTA 58.710 43.478 14.69 0.00 39.36 2.69
3383 10049 9.797556 CTCAAATTTTATGAGATCTGATTGCAA 57.202 29.630 0.00 0.00 45.74 4.08
3407 10073 1.202698 ACTGACAGGAAGTTGTGGCTC 60.203 52.381 7.51 0.00 0.00 4.70
3590 10261 1.272704 GGCCAGAACTTCTTGGGGAAT 60.273 52.381 0.00 0.00 33.01 3.01
3719 10416 5.716228 TGAAGTTGTAAGGAATGCATTGGAT 59.284 36.000 18.59 4.69 0.00 3.41
3726 10423 5.948992 AGACTTGAAGTTGTAAGGAATGC 57.051 39.130 0.00 0.00 0.00 3.56
3735 10432 6.322201 ACAATTCCATCAAGACTTGAAGTTGT 59.678 34.615 21.29 18.76 43.95 3.32
3765 10464 1.291877 CGCCTCAAACTCCTGAACCG 61.292 60.000 0.00 0.00 0.00 4.44
3766 10465 1.578206 GCGCCTCAAACTCCTGAACC 61.578 60.000 0.00 0.00 0.00 3.62
3790 10496 0.904865 AGAGGACATTGGCGTCTGGA 60.905 55.000 13.77 0.00 36.12 3.86
3824 10530 3.441290 CCGCCTCGACTCCTCGTT 61.441 66.667 0.00 0.00 41.02 3.85
3909 10615 1.826024 GCGTCAGGGACATCCTCAT 59.174 57.895 0.00 0.00 46.12 2.90
3922 10628 1.506718 GAGGATGTCTGTCGCGTCA 59.493 57.895 5.77 5.79 0.00 4.35
3931 10637 2.573869 CGTGGCACGAGGATGTCT 59.426 61.111 34.85 0.00 46.05 3.41
3961 10667 2.263895 AGGTGCCCATGTAGAACCTA 57.736 50.000 10.36 0.00 39.48 3.08
3972 10678 1.455849 CAGTTGGAGAAGGTGCCCA 59.544 57.895 0.00 0.00 0.00 5.36
4035 10741 1.053424 TGGACTTTTGGAGGTACGCT 58.947 50.000 0.00 0.00 0.00 5.07
4044 10750 6.400568 AGCACAATATGATTTGGACTTTTGG 58.599 36.000 0.00 0.00 0.00 3.28
4046 10752 6.351286 GGGAGCACAATATGATTTGGACTTTT 60.351 38.462 0.00 0.00 0.00 2.27
4049 10755 4.079558 AGGGAGCACAATATGATTTGGACT 60.080 41.667 0.00 0.00 0.00 3.85
4050 10756 4.210331 AGGGAGCACAATATGATTTGGAC 58.790 43.478 0.00 0.00 0.00 4.02
4051 10757 4.524802 AGGGAGCACAATATGATTTGGA 57.475 40.909 0.00 0.00 0.00 3.53
4052 10758 6.906157 ATTAGGGAGCACAATATGATTTGG 57.094 37.500 0.00 0.00 0.00 3.28
4053 10759 6.643770 GCAATTAGGGAGCACAATATGATTTG 59.356 38.462 0.00 0.00 0.00 2.32
4058 10764 4.823442 TGAGCAATTAGGGAGCACAATATG 59.177 41.667 0.00 0.00 0.00 1.78
4072 10778 5.617529 CGCAAAAGAGTCACATGAGCAATTA 60.618 40.000 0.00 0.00 0.00 1.40
4113 10824 7.510685 TGCCTATATATATAGCAGAGGGGAAAG 59.489 40.741 20.27 6.94 35.45 2.62
4122 10833 5.334957 CGACCGGTGCCTATATATATAGCAG 60.335 48.000 14.63 11.34 35.45 4.24
4125 10836 4.082895 GCCGACCGGTGCCTATATATATAG 60.083 50.000 14.63 19.15 37.65 1.31
4177 10888 0.253044 ATGGCCATTGTAGTGCTCGT 59.747 50.000 14.09 0.00 0.00 4.18
4194 10905 5.128205 TGAAAGATAAGCTCCATGGACATG 58.872 41.667 11.44 2.19 38.51 3.21
4249 11006 5.945784 AGACAAGCCATAAGACATGCTAAAA 59.054 36.000 0.00 0.00 32.82 1.52
4252 11009 4.760530 AGACAAGCCATAAGACATGCTA 57.239 40.909 0.00 0.00 32.82 3.49
4254 11011 3.691118 TCAAGACAAGCCATAAGACATGC 59.309 43.478 0.00 0.00 0.00 4.06
4255 11012 4.940046 ACTCAAGACAAGCCATAAGACATG 59.060 41.667 0.00 0.00 0.00 3.21
4257 11014 4.623932 ACTCAAGACAAGCCATAAGACA 57.376 40.909 0.00 0.00 0.00 3.41
4311 11209 6.073440 AGCATCAAATCAACATCAAGTTTTGC 60.073 34.615 0.00 0.00 38.74 3.68
4390 11293 4.348863 ACTCTTCTGAGCACAGTTGATT 57.651 40.909 11.07 2.86 43.85 2.57
4494 11397 0.804364 GGACATGCTTCACATTCGCA 59.196 50.000 0.00 0.00 36.64 5.10
4515 11418 1.344438 TCACCACCACAGAGTGTCATC 59.656 52.381 0.00 0.00 35.93 2.92
4520 11423 1.134401 ACAGTTCACCACCACAGAGTG 60.134 52.381 0.00 0.00 37.51 3.51
4533 11436 4.242475 CGATGGTTAGCAACTACAGTTCA 58.758 43.478 0.00 0.00 35.83 3.18
4568 11471 3.056607 GCAAAGCCCTGCAAAGAGAAATA 60.057 43.478 2.83 0.00 42.17 1.40
4612 11515 8.764558 TCATGATCCATCCATTCTTTCATTTTT 58.235 29.630 0.00 0.00 0.00 1.94
4623 11532 7.648770 TGATATCCATTCATGATCCATCCATT 58.351 34.615 0.00 0.00 0.00 3.16
4713 11622 8.711457 CGAAAAGAAATGGTTTAGCATGAATTT 58.289 29.630 0.00 0.00 0.00 1.82
4714 11623 7.331687 CCGAAAAGAAATGGTTTAGCATGAATT 59.668 33.333 0.00 0.00 0.00 2.17
4739 11648 7.961325 ATAACAATGAAACAACCAACAATCC 57.039 32.000 0.00 0.00 0.00 3.01
4877 11787 1.734377 GCGTCACACGATGATGGTACA 60.734 52.381 13.16 0.00 46.05 2.90
4881 11791 0.102300 TAGGCGTCACACGATGATGG 59.898 55.000 13.16 4.34 46.05 3.51
4904 11814 6.636850 CACACGATTTTCTTTTCCTTTACCAG 59.363 38.462 0.00 0.00 0.00 4.00
4925 11835 4.690280 CCTGAATTTAATTTGGTGCCACAC 59.310 41.667 0.00 0.00 0.00 3.82
4947 11857 3.922240 TGTCTACGCGTGAGTATTTTTCC 59.078 43.478 24.59 3.05 0.00 3.13
4977 11887 7.486870 CCGTATAATTCTACAAGCATGCGTATA 59.513 37.037 13.01 0.94 0.00 1.47
4979 11889 5.631929 CCGTATAATTCTACAAGCATGCGTA 59.368 40.000 13.01 8.61 0.00 4.42
4985 11895 8.635328 TCATTCTACCGTATAATTCTACAAGCA 58.365 33.333 2.37 0.00 0.00 3.91
4986 11896 9.472361 TTCATTCTACCGTATAATTCTACAAGC 57.528 33.333 2.37 0.00 0.00 4.01
5000 11910 6.037172 GCAAGATGTACATTTCATTCTACCGT 59.963 38.462 10.30 0.00 0.00 4.83
5006 11916 6.020121 GCACATGCAAGATGTACATTTCATTC 60.020 38.462 10.30 0.00 41.59 2.67
5007 11917 5.808540 GCACATGCAAGATGTACATTTCATT 59.191 36.000 10.30 0.62 41.59 2.57
5008 11918 5.345702 GCACATGCAAGATGTACATTTCAT 58.654 37.500 10.30 8.23 41.59 2.57
5009 11919 4.672283 CGCACATGCAAGATGTACATTTCA 60.672 41.667 10.30 6.31 42.21 2.69
5010 11920 3.787634 CGCACATGCAAGATGTACATTTC 59.212 43.478 10.30 0.00 42.21 2.17
5017 11927 4.700268 TTTATTCGCACATGCAAGATGT 57.300 36.364 4.49 0.00 42.21 3.06
5032 11942 6.776094 AGCTTATGCGAAGACTGTTTTATTC 58.224 36.000 2.48 0.00 45.42 1.75
5049 11959 3.190079 TCACGCAAGAGCTTAGCTTATG 58.810 45.455 8.58 11.66 39.88 1.90
5073 11983 5.907391 GCCGTATTTGCTATACAATTGTGTC 59.093 40.000 21.42 4.31 38.31 3.67
5079 11989 5.530519 CGATGCCGTATTTGCTATACAAT 57.469 39.130 9.28 1.89 38.31 2.71
5101 12011 4.973663 CCGAACAACTGATTTACCACAAAC 59.026 41.667 0.00 0.00 0.00 2.93
5125 12035 7.033185 AGACAAACAAAGACACAAATAACACC 58.967 34.615 0.00 0.00 0.00 4.16
5126 12036 9.221775 CTAGACAAACAAAGACACAAATAACAC 57.778 33.333 0.00 0.00 0.00 3.32
5204 12114 9.119418 TCGTGACATGATCCACAATATTTTATT 57.881 29.630 0.00 0.00 33.13 1.40
5228 12139 4.024048 AGTGCAAGTGTTTCTAATTGGTCG 60.024 41.667 0.00 0.00 0.00 4.79
5234 12145 7.162082 ACTTAGCTAGTGCAAGTGTTTCTAAT 58.838 34.615 0.00 0.00 42.74 1.73
5235 12146 6.522054 ACTTAGCTAGTGCAAGTGTTTCTAA 58.478 36.000 0.00 0.00 42.74 2.10
5236 12147 6.097915 ACTTAGCTAGTGCAAGTGTTTCTA 57.902 37.500 0.00 0.00 42.74 2.10
5249 12160 6.369065 CACGATTTTCCTTTCACTTAGCTAGT 59.631 38.462 0.00 0.00 37.68 2.57
5251 12162 5.121768 GCACGATTTTCCTTTCACTTAGCTA 59.878 40.000 0.00 0.00 0.00 3.32
5253 12164 4.159120 GCACGATTTTCCTTTCACTTAGC 58.841 43.478 0.00 0.00 0.00 3.09
5301 12212 5.648960 AGTCGGTTTCTAAACAAGGTTTTCA 59.351 36.000 7.80 0.00 40.63 2.69
5302 12213 6.127810 AGTCGGTTTCTAAACAAGGTTTTC 57.872 37.500 7.80 0.00 40.63 2.29
5303 12214 7.049754 TCTAGTCGGTTTCTAAACAAGGTTTT 58.950 34.615 7.80 0.00 40.63 2.43
5304 12215 6.585416 TCTAGTCGGTTTCTAAACAAGGTTT 58.415 36.000 7.80 0.00 40.63 3.27
5305 12216 6.165700 TCTAGTCGGTTTCTAAACAAGGTT 57.834 37.500 7.80 0.00 40.63 3.50
5306 12217 5.796424 TCTAGTCGGTTTCTAAACAAGGT 57.204 39.130 7.80 0.00 40.63 3.50
5307 12218 5.638234 CCTTCTAGTCGGTTTCTAAACAAGG 59.362 44.000 7.80 6.18 40.63 3.61
5308 12219 6.221659 ACCTTCTAGTCGGTTTCTAAACAAG 58.778 40.000 7.80 1.82 40.63 3.16
5309 12220 6.165700 ACCTTCTAGTCGGTTTCTAAACAA 57.834 37.500 7.80 0.00 40.63 2.83
5310 12221 5.796424 ACCTTCTAGTCGGTTTCTAAACA 57.204 39.130 7.80 0.00 40.63 2.83
5311 12222 6.453943 AGAACCTTCTAGTCGGTTTCTAAAC 58.546 40.000 16.00 0.00 43.23 2.01
5312 12223 6.569226 CGAGAACCTTCTAGTCGGTTTCTAAA 60.569 42.308 16.00 0.00 43.23 1.85
5313 12224 5.106396 CGAGAACCTTCTAGTCGGTTTCTAA 60.106 44.000 16.00 0.00 43.23 2.10
5314 12225 4.394300 CGAGAACCTTCTAGTCGGTTTCTA 59.606 45.833 16.00 0.00 43.23 2.10
5315 12226 3.190953 CGAGAACCTTCTAGTCGGTTTCT 59.809 47.826 16.00 14.09 43.23 2.52
5316 12227 3.190118 TCGAGAACCTTCTAGTCGGTTTC 59.810 47.826 16.00 13.88 43.23 2.78
5317 12228 3.152341 TCGAGAACCTTCTAGTCGGTTT 58.848 45.455 16.00 8.90 43.23 3.27
5318 12229 2.787994 TCGAGAACCTTCTAGTCGGTT 58.212 47.619 15.19 15.19 45.71 4.44
5319 12230 2.486472 TCGAGAACCTTCTAGTCGGT 57.514 50.000 0.71 0.71 37.73 4.69
5320 12231 3.500014 GTTTCGAGAACCTTCTAGTCGG 58.500 50.000 0.00 0.00 37.73 4.79
5321 12232 3.162068 CGTTTCGAGAACCTTCTAGTCG 58.838 50.000 0.00 0.00 37.73 4.18
5322 12233 3.500014 CCGTTTCGAGAACCTTCTAGTC 58.500 50.000 0.00 0.00 37.73 2.59
5323 12234 2.230750 CCCGTTTCGAGAACCTTCTAGT 59.769 50.000 0.00 0.00 37.73 2.57
5324 12235 2.230750 ACCCGTTTCGAGAACCTTCTAG 59.769 50.000 5.33 0.00 37.73 2.43
5325 12236 2.242043 ACCCGTTTCGAGAACCTTCTA 58.758 47.619 5.33 0.00 37.73 2.10
5326 12237 1.046204 ACCCGTTTCGAGAACCTTCT 58.954 50.000 5.33 0.00 41.00 2.85
5327 12238 2.730550 TACCCGTTTCGAGAACCTTC 57.269 50.000 5.33 0.00 0.00 3.46
5328 12239 3.473923 TTTACCCGTTTCGAGAACCTT 57.526 42.857 5.33 0.00 0.00 3.50
5329 12240 3.473923 TTTTACCCGTTTCGAGAACCT 57.526 42.857 5.33 0.00 0.00 3.50
5330 12241 3.561310 AGTTTTTACCCGTTTCGAGAACC 59.439 43.478 5.33 0.00 0.00 3.62
5331 12242 4.606894 CGAGTTTTTACCCGTTTCGAGAAC 60.607 45.833 0.00 0.00 0.00 3.01
5332 12243 3.490526 CGAGTTTTTACCCGTTTCGAGAA 59.509 43.478 0.00 0.00 0.00 2.87
5333 12244 3.052036 CGAGTTTTTACCCGTTTCGAGA 58.948 45.455 0.00 0.00 0.00 4.04
5334 12245 2.156310 CCGAGTTTTTACCCGTTTCGAG 59.844 50.000 0.00 0.00 0.00 4.04
5335 12246 2.134346 CCGAGTTTTTACCCGTTTCGA 58.866 47.619 0.00 0.00 0.00 3.71
5336 12247 1.195222 CCCGAGTTTTTACCCGTTTCG 59.805 52.381 0.00 0.00 0.00 3.46
5337 12248 1.069022 GCCCGAGTTTTTACCCGTTTC 60.069 52.381 0.00 0.00 0.00 2.78
5338 12249 0.953727 GCCCGAGTTTTTACCCGTTT 59.046 50.000 0.00 0.00 0.00 3.60
5339 12250 0.109153 AGCCCGAGTTTTTACCCGTT 59.891 50.000 0.00 0.00 0.00 4.44
5340 12251 0.604511 CAGCCCGAGTTTTTACCCGT 60.605 55.000 0.00 0.00 0.00 5.28
5341 12252 1.303091 CCAGCCCGAGTTTTTACCCG 61.303 60.000 0.00 0.00 0.00 5.28
5342 12253 0.037160 TCCAGCCCGAGTTTTTACCC 59.963 55.000 0.00 0.00 0.00 3.69
5343 12254 1.538512 GTTCCAGCCCGAGTTTTTACC 59.461 52.381 0.00 0.00 0.00 2.85
5344 12255 1.538512 GGTTCCAGCCCGAGTTTTTAC 59.461 52.381 0.00 0.00 0.00 2.01
5345 12256 1.143277 TGGTTCCAGCCCGAGTTTTTA 59.857 47.619 0.00 0.00 0.00 1.52
5346 12257 0.106419 TGGTTCCAGCCCGAGTTTTT 60.106 50.000 0.00 0.00 0.00 1.94
5347 12258 0.112412 ATGGTTCCAGCCCGAGTTTT 59.888 50.000 0.00 0.00 0.00 2.43
5348 12259 0.322546 GATGGTTCCAGCCCGAGTTT 60.323 55.000 0.00 0.00 0.00 2.66
5349 12260 1.299976 GATGGTTCCAGCCCGAGTT 59.700 57.895 0.00 0.00 0.00 3.01
5350 12261 2.670148 GGATGGTTCCAGCCCGAGT 61.670 63.158 14.46 0.00 42.12 4.18
5351 12262 2.190578 GGATGGTTCCAGCCCGAG 59.809 66.667 14.46 0.00 42.12 4.63
5352 12263 2.285368 AGGATGGTTCCAGCCCGA 60.285 61.111 20.60 0.00 45.30 5.14
5353 12264 2.124570 CAGGATGGTTCCAGCCCG 60.125 66.667 20.60 8.63 45.30 6.13
5354 12265 0.681243 GTTCAGGATGGTTCCAGCCC 60.681 60.000 20.60 12.44 45.30 5.19
5355 12266 1.026718 CGTTCAGGATGGTTCCAGCC 61.027 60.000 17.24 17.24 45.30 4.85
5356 12267 0.321653 ACGTTCAGGATGGTTCCAGC 60.322 55.000 0.00 0.00 45.30 4.85
5357 12268 2.076863 GAACGTTCAGGATGGTTCCAG 58.923 52.381 23.12 0.00 45.30 3.86
5358 12269 1.697432 AGAACGTTCAGGATGGTTCCA 59.303 47.619 28.78 0.00 45.30 3.53
5359 12270 2.474410 AGAACGTTCAGGATGGTTCC 57.526 50.000 28.78 0.00 39.58 3.62
5360 12271 2.412089 CGAAGAACGTTCAGGATGGTTC 59.588 50.000 28.78 19.31 39.16 3.62
5361 12272 2.413837 CGAAGAACGTTCAGGATGGTT 58.586 47.619 28.78 13.15 35.08 3.67
5362 12273 2.080286 CGAAGAACGTTCAGGATGGT 57.920 50.000 28.78 4.57 35.08 3.55
5373 12284 1.606350 GACGCTGGTCACGAAGAACG 61.606 60.000 0.00 0.00 42.91 3.95
5374 12285 1.282930 GGACGCTGGTCACGAAGAAC 61.283 60.000 0.00 0.00 45.28 3.01
5375 12286 1.006571 GGACGCTGGTCACGAAGAA 60.007 57.895 0.00 0.00 45.28 2.52
5376 12287 2.142357 CTGGACGCTGGTCACGAAGA 62.142 60.000 0.00 0.00 45.28 2.87
5377 12288 1.734477 CTGGACGCTGGTCACGAAG 60.734 63.158 0.00 0.00 45.28 3.79
5378 12289 2.023414 AACTGGACGCTGGTCACGAA 62.023 55.000 0.00 0.00 45.28 3.85
5379 12290 1.174078 TAACTGGACGCTGGTCACGA 61.174 55.000 0.00 0.00 45.28 4.35
5380 12291 0.108804 ATAACTGGACGCTGGTCACG 60.109 55.000 0.00 0.00 45.28 4.35
5381 12292 2.426024 TCTATAACTGGACGCTGGTCAC 59.574 50.000 0.00 0.00 45.28 3.67
5382 12293 2.730382 TCTATAACTGGACGCTGGTCA 58.270 47.619 0.00 0.00 45.28 4.02
5383 12294 3.130693 ACTTCTATAACTGGACGCTGGTC 59.869 47.826 0.00 0.00 42.66 4.02
5384 12295 3.097614 ACTTCTATAACTGGACGCTGGT 58.902 45.455 0.00 0.00 0.00 4.00
5385 12296 3.130516 TCACTTCTATAACTGGACGCTGG 59.869 47.826 0.00 0.00 0.00 4.85
5386 12297 4.371855 TCACTTCTATAACTGGACGCTG 57.628 45.455 0.00 0.00 0.00 5.18
5387 12298 6.710597 TTATCACTTCTATAACTGGACGCT 57.289 37.500 0.00 0.00 0.00 5.07
5388 12299 6.074249 GCTTTATCACTTCTATAACTGGACGC 60.074 42.308 0.00 0.00 0.00 5.19
5389 12300 6.142480 CGCTTTATCACTTCTATAACTGGACG 59.858 42.308 0.00 0.00 0.00 4.79
5390 12301 6.421202 CCGCTTTATCACTTCTATAACTGGAC 59.579 42.308 0.00 0.00 0.00 4.02
5391 12302 6.513180 CCGCTTTATCACTTCTATAACTGGA 58.487 40.000 0.00 0.00 0.00 3.86
5392 12303 5.177696 GCCGCTTTATCACTTCTATAACTGG 59.822 44.000 0.00 0.00 0.00 4.00
5393 12304 5.177696 GGCCGCTTTATCACTTCTATAACTG 59.822 44.000 0.00 0.00 0.00 3.16
5394 12305 5.070580 AGGCCGCTTTATCACTTCTATAACT 59.929 40.000 0.00 0.00 0.00 2.24
5395 12306 5.177696 CAGGCCGCTTTATCACTTCTATAAC 59.822 44.000 0.00 0.00 0.00 1.89
5396 12307 5.297547 CAGGCCGCTTTATCACTTCTATAA 58.702 41.667 0.00 0.00 0.00 0.98
5397 12308 4.799586 GCAGGCCGCTTTATCACTTCTATA 60.800 45.833 11.61 0.00 37.77 1.31
5398 12309 3.733337 CAGGCCGCTTTATCACTTCTAT 58.267 45.455 0.00 0.00 0.00 1.98
5399 12310 2.741878 GCAGGCCGCTTTATCACTTCTA 60.742 50.000 11.61 0.00 37.77 2.10
5400 12311 2.014068 GCAGGCCGCTTTATCACTTCT 61.014 52.381 11.61 0.00 37.77 2.85
5401 12312 0.378610 GCAGGCCGCTTTATCACTTC 59.621 55.000 11.61 0.00 37.77 3.01
5402 12313 1.369091 CGCAGGCCGCTTTATCACTT 61.369 55.000 15.78 0.00 39.08 3.16
5403 12314 1.815421 CGCAGGCCGCTTTATCACT 60.815 57.895 15.78 0.00 39.08 3.41
5404 12315 2.709475 CGCAGGCCGCTTTATCAC 59.291 61.111 15.78 0.00 39.08 3.06
5413 12324 2.032634 TTCTTAACTGCGCAGGCCG 61.033 57.895 38.27 23.46 38.85 6.13
5414 12325 1.502190 GTTCTTAACTGCGCAGGCC 59.498 57.895 38.27 15.32 38.85 5.19
5415 12326 1.132640 CGTTCTTAACTGCGCAGGC 59.867 57.895 38.27 18.28 40.52 4.85
5420 12331 0.362512 GACGAGCGTTCTTAACTGCG 59.637 55.000 0.00 0.00 36.51 5.18
5421 12332 1.387084 CAGACGAGCGTTCTTAACTGC 59.613 52.381 0.00 0.00 0.00 4.40
5422 12333 1.986378 CCAGACGAGCGTTCTTAACTG 59.014 52.381 0.00 0.00 0.00 3.16
5423 12334 1.884579 TCCAGACGAGCGTTCTTAACT 59.115 47.619 0.00 0.00 0.00 2.24
5424 12335 2.342910 TCCAGACGAGCGTTCTTAAC 57.657 50.000 0.00 0.00 0.00 2.01
5425 12336 2.159282 GGATCCAGACGAGCGTTCTTAA 60.159 50.000 6.95 0.00 0.00 1.85
5426 12337 1.404391 GGATCCAGACGAGCGTTCTTA 59.596 52.381 6.95 0.00 0.00 2.10
5427 12338 0.173708 GGATCCAGACGAGCGTTCTT 59.826 55.000 6.95 0.00 0.00 2.52
5428 12339 0.681564 AGGATCCAGACGAGCGTTCT 60.682 55.000 15.82 0.00 0.00 3.01
5429 12340 1.810532 AGGATCCAGACGAGCGTTC 59.189 57.895 15.82 0.00 0.00 3.95
5430 12341 4.019983 AGGATCCAGACGAGCGTT 57.980 55.556 15.82 0.00 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.