Multiple sequence alignment - TraesCS5A01G548900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G548900 chr5A 100.000 2548 0 0 1 2548 702815652 702813105 0.000000e+00 4706
1 TraesCS5A01G548900 chr5A 91.923 1981 134 13 587 2548 650703528 650701555 0.000000e+00 2748
2 TraesCS5A01G548900 chr5A 85.582 541 66 3 5 545 702870314 702869786 7.960000e-155 556
3 TraesCS5A01G548900 chr5D 92.594 1985 109 19 591 2548 44511941 44513914 0.000000e+00 2817
4 TraesCS5A01G548900 chr6D 92.409 1976 121 15 595 2548 12108135 12106167 0.000000e+00 2791
5 TraesCS5A01G548900 chr6D 90.932 1985 125 19 592 2548 312544303 312542346 0.000000e+00 2617
6 TraesCS5A01G548900 chrUn 92.931 1938 103 19 636 2548 43407879 43409807 0.000000e+00 2789
7 TraesCS5A01G548900 chrUn 92.248 1948 134 12 593 2525 20573301 20575246 0.000000e+00 2745
8 TraesCS5A01G548900 chr4D 92.273 1980 122 14 591 2548 78732771 78730801 0.000000e+00 2780
9 TraesCS5A01G548900 chr4D 81.912 387 58 5 23 407 506562312 506561936 1.470000e-82 316
10 TraesCS5A01G548900 chr3B 92.292 1985 112 20 591 2548 370213879 370215849 0.000000e+00 2780
11 TraesCS5A01G548900 chr3B 91.208 1979 140 17 593 2548 763485553 763483586 0.000000e+00 2660
12 TraesCS5A01G548900 chr3B 86.024 415 57 1 2 416 800144086 800144499 6.470000e-121 444
13 TraesCS5A01G548900 chr3B 91.259 286 8 3 2280 2548 599077691 599077406 8.610000e-100 374
14 TraesCS5A01G548900 chr1B 91.906 1952 135 14 593 2525 593290586 593288639 0.000000e+00 2708
15 TraesCS5A01G548900 chr2D 93.750 256 6 3 2280 2525 331198906 331199161 2.390000e-100 375


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G548900 chr5A 702813105 702815652 2547 True 4706 4706 100.000 1 2548 1 chr5A.!!$R2 2547
1 TraesCS5A01G548900 chr5A 650701555 650703528 1973 True 2748 2748 91.923 587 2548 1 chr5A.!!$R1 1961
2 TraesCS5A01G548900 chr5A 702869786 702870314 528 True 556 556 85.582 5 545 1 chr5A.!!$R3 540
3 TraesCS5A01G548900 chr5D 44511941 44513914 1973 False 2817 2817 92.594 591 2548 1 chr5D.!!$F1 1957
4 TraesCS5A01G548900 chr6D 12106167 12108135 1968 True 2791 2791 92.409 595 2548 1 chr6D.!!$R1 1953
5 TraesCS5A01G548900 chr6D 312542346 312544303 1957 True 2617 2617 90.932 592 2548 1 chr6D.!!$R2 1956
6 TraesCS5A01G548900 chrUn 43407879 43409807 1928 False 2789 2789 92.931 636 2548 1 chrUn.!!$F2 1912
7 TraesCS5A01G548900 chrUn 20573301 20575246 1945 False 2745 2745 92.248 593 2525 1 chrUn.!!$F1 1932
8 TraesCS5A01G548900 chr4D 78730801 78732771 1970 True 2780 2780 92.273 591 2548 1 chr4D.!!$R1 1957
9 TraesCS5A01G548900 chr3B 370213879 370215849 1970 False 2780 2780 92.292 591 2548 1 chr3B.!!$F1 1957
10 TraesCS5A01G548900 chr3B 763483586 763485553 1967 True 2660 2660 91.208 593 2548 1 chr3B.!!$R2 1955
11 TraesCS5A01G548900 chr1B 593288639 593290586 1947 True 2708 2708 91.906 593 2525 1 chr1B.!!$R1 1932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
622 623 0.03254 CCTTTTGCCTTCAGTGGTGC 59.967 55.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2355 2406 1.265635 TGGCAGTGCAAACATACGTTC 59.734 47.619 18.61 0.0 32.91 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.906055 ACCAGGACTCCATGCTCT 57.094 55.556 0.00 0.00 0.00 4.09
19 20 0.908198 ACCAGGACTCCATGCTCTTC 59.092 55.000 0.00 0.00 0.00 2.87
21 22 0.820226 CAGGACTCCATGCTCTTCGA 59.180 55.000 0.00 0.00 0.00 3.71
22 23 1.110442 AGGACTCCATGCTCTTCGAG 58.890 55.000 0.00 0.00 0.00 4.04
72 73 1.623973 GGGTTGTAGACGAAGCACGC 61.624 60.000 0.00 0.00 46.94 5.34
100 101 1.599606 CGGACACACAGAGGAGGAGG 61.600 65.000 0.00 0.00 0.00 4.30
103 104 2.681778 ACACAGAGGAGGAGGCCG 60.682 66.667 0.00 0.00 0.00 6.13
109 110 3.249189 AGGAGGAGGCCGTTGCAA 61.249 61.111 0.00 0.00 40.13 4.08
132 133 0.598419 TCGATGACGATGCATGAGGC 60.598 55.000 2.46 0.00 43.81 4.70
135 136 0.534427 ATGACGATGCATGAGGCCAG 60.534 55.000 2.46 0.00 43.89 4.85
177 178 2.824041 GGTGTCGATGCCGCCATT 60.824 61.111 0.00 0.00 35.37 3.16
179 180 2.823593 TGTCGATGCCGCCATTGG 60.824 61.111 0.00 0.00 34.23 3.16
205 206 1.952621 TCCCTCGGGAGAAGAAACAT 58.047 50.000 0.00 0.00 39.76 2.71
217 218 2.169832 AGAAACATGTGTCGTCCCAG 57.830 50.000 10.42 0.00 0.00 4.45
219 220 0.179032 AAACATGTGTCGTCCCAGCA 60.179 50.000 0.00 0.00 0.00 4.41
221 222 0.674581 ACATGTGTCGTCCCAGCATG 60.675 55.000 0.00 0.00 41.67 4.06
238 239 2.125832 GCGCTGCCCGTGTAGTTA 60.126 61.111 0.00 0.00 39.71 2.24
251 252 4.377022 CCGTGTAGTTAATGAATATGCCGC 60.377 45.833 0.00 0.00 0.00 6.53
289 290 4.069232 TGCGAGAGGACAAGCCCG 62.069 66.667 0.00 0.00 37.37 6.13
326 327 1.069765 CACCAGTCCTTGCAGACGT 59.930 57.895 0.00 0.00 41.83 4.34
357 358 3.056328 GAGGTGCTTTGGCGGGAC 61.056 66.667 0.00 0.00 42.25 4.46
384 385 1.741770 GGATGTCGGCGAGCAACTT 60.742 57.895 11.20 0.00 0.00 2.66
388 389 2.357034 TCGGCGAGCAACTTGTCC 60.357 61.111 4.99 0.00 0.00 4.02
390 391 2.357034 GGCGAGCAACTTGTCCGA 60.357 61.111 8.47 0.00 0.00 4.55
403 404 0.977627 TGTCCGACAGCTCCATGGAT 60.978 55.000 16.63 0.00 0.00 3.41
404 405 0.531532 GTCCGACAGCTCCATGGATG 60.532 60.000 16.63 14.46 0.00 3.51
424 425 2.310647 TGGATGGATGGATGGATGGATG 59.689 50.000 0.00 0.00 0.00 3.51
428 429 2.579400 TGGATGGATGGATGGATGGATC 59.421 50.000 0.00 0.00 0.00 3.36
434 435 1.715785 TGGATGGATGGATCTACGCA 58.284 50.000 0.00 0.00 0.00 5.24
440 441 1.470979 GGATGGATCTACGCAACGTGT 60.471 52.381 2.35 0.00 41.39 4.49
451 452 3.384532 AACGTGTCGGCCGGGTAT 61.385 61.111 27.83 4.48 0.00 2.73
456 457 2.510691 GTCGGCCGGGTATGTGTG 60.511 66.667 27.83 0.00 0.00 3.82
457 458 2.998480 TCGGCCGGGTATGTGTGT 60.998 61.111 27.83 0.00 0.00 3.72
458 459 2.046700 CGGCCGGGTATGTGTGTT 60.047 61.111 20.10 0.00 0.00 3.32
459 460 2.395360 CGGCCGGGTATGTGTGTTG 61.395 63.158 20.10 0.00 0.00 3.33
460 461 1.302993 GGCCGGGTATGTGTGTTGT 60.303 57.895 2.18 0.00 0.00 3.32
461 462 0.891904 GGCCGGGTATGTGTGTTGTT 60.892 55.000 2.18 0.00 0.00 2.83
462 463 0.519961 GCCGGGTATGTGTGTTGTTC 59.480 55.000 2.18 0.00 0.00 3.18
463 464 0.793861 CCGGGTATGTGTGTTGTTCG 59.206 55.000 0.00 0.00 0.00 3.95
464 465 0.793861 CGGGTATGTGTGTTGTTCGG 59.206 55.000 0.00 0.00 0.00 4.30
465 466 1.874739 CGGGTATGTGTGTTGTTCGGT 60.875 52.381 0.00 0.00 0.00 4.69
466 467 2.223745 GGGTATGTGTGTTGTTCGGTT 58.776 47.619 0.00 0.00 0.00 4.44
467 468 2.619646 GGGTATGTGTGTTGTTCGGTTT 59.380 45.455 0.00 0.00 0.00 3.27
468 469 3.549221 GGGTATGTGTGTTGTTCGGTTTG 60.549 47.826 0.00 0.00 0.00 2.93
469 470 2.861462 ATGTGTGTTGTTCGGTTTGG 57.139 45.000 0.00 0.00 0.00 3.28
470 471 0.171455 TGTGTGTTGTTCGGTTTGGC 59.829 50.000 0.00 0.00 0.00 4.52
471 472 0.526739 GTGTGTTGTTCGGTTTGGCC 60.527 55.000 0.00 0.00 0.00 5.36
472 473 0.965866 TGTGTTGTTCGGTTTGGCCA 60.966 50.000 0.00 0.00 36.97 5.36
473 474 0.173708 GTGTTGTTCGGTTTGGCCAA 59.826 50.000 16.05 16.05 36.97 4.52
474 475 0.173708 TGTTGTTCGGTTTGGCCAAC 59.826 50.000 20.35 13.42 36.97 3.77
475 476 0.173708 GTTGTTCGGTTTGGCCAACA 59.826 50.000 20.35 10.00 37.07 3.33
476 477 0.895530 TTGTTCGGTTTGGCCAACAA 59.104 45.000 20.35 16.12 41.43 2.83
477 478 0.457851 TGTTCGGTTTGGCCAACAAG 59.542 50.000 20.35 12.24 40.82 3.16
478 479 0.874175 GTTCGGTTTGGCCAACAAGC 60.874 55.000 20.35 13.68 40.82 4.01
479 480 1.323271 TTCGGTTTGGCCAACAAGCA 61.323 50.000 20.35 0.00 41.51 3.91
480 481 1.300080 CGGTTTGGCCAACAAGCAG 60.300 57.895 20.35 7.19 41.51 4.24
481 482 1.733402 CGGTTTGGCCAACAAGCAGA 61.733 55.000 20.35 0.00 41.51 4.26
482 483 0.463620 GGTTTGGCCAACAAGCAGAA 59.536 50.000 20.35 0.00 41.51 3.02
483 484 1.538849 GGTTTGGCCAACAAGCAGAAG 60.539 52.381 20.35 0.00 41.51 2.85
484 485 1.408702 GTTTGGCCAACAAGCAGAAGA 59.591 47.619 20.35 0.00 40.82 2.87
485 486 1.999648 TTGGCCAACAAGCAGAAGAT 58.000 45.000 16.05 0.00 33.18 2.40
486 487 1.250328 TGGCCAACAAGCAGAAGATG 58.750 50.000 0.61 0.00 0.00 2.90
487 488 1.202915 TGGCCAACAAGCAGAAGATGA 60.203 47.619 0.61 0.00 0.00 2.92
488 489 1.888512 GGCCAACAAGCAGAAGATGAA 59.111 47.619 0.00 0.00 0.00 2.57
489 490 2.094854 GGCCAACAAGCAGAAGATGAAG 60.095 50.000 0.00 0.00 0.00 3.02
490 491 2.094854 GCCAACAAGCAGAAGATGAAGG 60.095 50.000 0.00 0.00 0.00 3.46
491 492 2.094854 CCAACAAGCAGAAGATGAAGGC 60.095 50.000 0.00 0.00 0.00 4.35
492 493 1.446907 ACAAGCAGAAGATGAAGGCG 58.553 50.000 0.00 0.00 0.00 5.52
493 494 0.731417 CAAGCAGAAGATGAAGGCGG 59.269 55.000 0.00 0.00 0.00 6.13
494 495 0.326264 AAGCAGAAGATGAAGGCGGT 59.674 50.000 0.00 0.00 0.00 5.68
495 496 0.392193 AGCAGAAGATGAAGGCGGTG 60.392 55.000 0.00 0.00 0.00 4.94
496 497 1.372087 GCAGAAGATGAAGGCGGTGG 61.372 60.000 0.00 0.00 0.00 4.61
497 498 1.078143 AGAAGATGAAGGCGGTGGC 60.078 57.895 0.00 0.00 38.90 5.01
498 499 1.377202 GAAGATGAAGGCGGTGGCA 60.377 57.895 0.00 0.00 42.47 4.92
499 500 0.749454 GAAGATGAAGGCGGTGGCAT 60.749 55.000 0.00 0.00 42.47 4.40
500 501 1.033746 AAGATGAAGGCGGTGGCATG 61.034 55.000 0.00 0.00 42.47 4.06
501 502 2.440796 ATGAAGGCGGTGGCATGG 60.441 61.111 0.00 0.00 42.47 3.66
502 503 4.738998 TGAAGGCGGTGGCATGGG 62.739 66.667 0.00 0.00 42.47 4.00
506 507 4.875713 GGCGGTGGCATGGGGTAG 62.876 72.222 0.00 0.00 42.47 3.18
508 509 4.108299 CGGTGGCATGGGGTAGCA 62.108 66.667 0.00 0.00 0.00 3.49
509 510 2.124151 GGTGGCATGGGGTAGCAG 60.124 66.667 0.00 0.00 0.00 4.24
510 511 2.679342 GGTGGCATGGGGTAGCAGA 61.679 63.158 0.00 0.00 0.00 4.26
511 512 1.153086 GTGGCATGGGGTAGCAGAG 60.153 63.158 0.00 0.00 0.00 3.35
512 513 1.616327 TGGCATGGGGTAGCAGAGT 60.616 57.895 0.00 0.00 0.00 3.24
513 514 1.207488 TGGCATGGGGTAGCAGAGTT 61.207 55.000 0.00 0.00 0.00 3.01
514 515 0.749454 GGCATGGGGTAGCAGAGTTG 60.749 60.000 0.00 0.00 0.00 3.16
515 516 0.749454 GCATGGGGTAGCAGAGTTGG 60.749 60.000 0.00 0.00 0.00 3.77
516 517 0.911769 CATGGGGTAGCAGAGTTGGA 59.088 55.000 0.00 0.00 0.00 3.53
517 518 1.492176 CATGGGGTAGCAGAGTTGGAT 59.508 52.381 0.00 0.00 0.00 3.41
518 519 1.204146 TGGGGTAGCAGAGTTGGATC 58.796 55.000 0.00 0.00 0.00 3.36
519 520 0.470341 GGGGTAGCAGAGTTGGATCC 59.530 60.000 4.20 4.20 0.00 3.36
520 521 1.204146 GGGTAGCAGAGTTGGATCCA 58.796 55.000 11.44 11.44 0.00 3.41
521 522 1.559682 GGGTAGCAGAGTTGGATCCAA 59.440 52.381 23.63 23.63 0.00 3.53
522 523 2.026262 GGGTAGCAGAGTTGGATCCAAA 60.026 50.000 28.64 8.75 37.70 3.28
523 524 3.372025 GGGTAGCAGAGTTGGATCCAAAT 60.372 47.826 28.64 27.62 37.70 2.32
524 525 3.629398 GGTAGCAGAGTTGGATCCAAATG 59.371 47.826 30.80 25.86 37.70 2.32
525 526 2.097825 AGCAGAGTTGGATCCAAATGC 58.902 47.619 33.14 33.14 39.91 3.56
526 527 1.202222 GCAGAGTTGGATCCAAATGCG 60.202 52.381 30.80 20.96 37.70 4.73
527 528 1.098050 AGAGTTGGATCCAAATGCGC 58.902 50.000 30.80 18.72 37.70 6.09
528 529 1.098050 GAGTTGGATCCAAATGCGCT 58.902 50.000 30.80 21.31 37.70 5.92
529 530 1.474077 GAGTTGGATCCAAATGCGCTT 59.526 47.619 30.80 9.91 37.70 4.68
530 531 1.895131 AGTTGGATCCAAATGCGCTTT 59.105 42.857 28.64 5.65 37.70 3.51
531 532 1.994779 GTTGGATCCAAATGCGCTTTG 59.005 47.619 28.64 19.16 43.27 2.77
532 533 1.543607 TGGATCCAAATGCGCTTTGA 58.456 45.000 24.49 13.76 45.96 2.69
533 534 1.891811 TGGATCCAAATGCGCTTTGAA 59.108 42.857 24.49 12.08 45.96 2.69
534 535 2.496871 TGGATCCAAATGCGCTTTGAAT 59.503 40.909 24.49 15.46 45.96 2.57
535 536 3.055963 TGGATCCAAATGCGCTTTGAATT 60.056 39.130 24.49 8.61 45.96 2.17
536 537 3.307782 GGATCCAAATGCGCTTTGAATTG 59.692 43.478 24.49 13.59 45.96 2.32
537 538 2.686235 TCCAAATGCGCTTTGAATTGG 58.314 42.857 24.49 20.00 45.96 3.16
538 539 2.298446 TCCAAATGCGCTTTGAATTGGA 59.702 40.909 24.49 21.48 45.96 3.53
539 540 3.055963 TCCAAATGCGCTTTGAATTGGAT 60.056 39.130 24.49 0.00 45.96 3.41
540 541 3.685756 CCAAATGCGCTTTGAATTGGATT 59.314 39.130 24.49 5.42 45.96 3.01
541 542 4.201744 CCAAATGCGCTTTGAATTGGATTC 60.202 41.667 24.49 0.00 45.96 2.52
542 543 3.872511 ATGCGCTTTGAATTGGATTCA 57.127 38.095 9.73 0.00 46.77 2.57
550 551 3.781079 TGAATTGGATTCATTGCGGTC 57.219 42.857 0.00 0.00 43.84 4.79
551 552 2.097304 TGAATTGGATTCATTGCGGTCG 59.903 45.455 0.00 0.00 43.84 4.79
552 553 0.381801 ATTGGATTCATTGCGGTCGC 59.618 50.000 8.54 8.54 42.35 5.19
553 554 5.569008 GAATTGGATTCATTGCGGTCGCA 62.569 47.826 14.32 14.32 43.04 5.10
568 569 4.043200 GCAAGTCGGCAGCCCAAC 62.043 66.667 5.63 4.53 0.00 3.77
569 570 2.281761 CAAGTCGGCAGCCCAACT 60.282 61.111 5.63 7.11 0.00 3.16
570 571 1.898574 CAAGTCGGCAGCCCAACTT 60.899 57.895 17.54 17.54 0.00 2.66
571 572 1.898574 AAGTCGGCAGCCCAACTTG 60.899 57.895 21.01 1.15 0.00 3.16
572 573 2.594592 GTCGGCAGCCCAACTTGT 60.595 61.111 5.63 0.00 0.00 3.16
573 574 2.594303 TCGGCAGCCCAACTTGTG 60.594 61.111 5.63 0.00 0.00 3.33
574 575 2.906897 CGGCAGCCCAACTTGTGT 60.907 61.111 5.63 0.00 0.00 3.72
575 576 2.908073 CGGCAGCCCAACTTGTGTC 61.908 63.158 5.63 0.00 0.00 3.67
576 577 2.564721 GGCAGCCCAACTTGTGTCC 61.565 63.158 0.00 0.00 0.00 4.02
577 578 2.908073 GCAGCCCAACTTGTGTCCG 61.908 63.158 0.00 0.00 0.00 4.79
578 579 1.227823 CAGCCCAACTTGTGTCCGA 60.228 57.895 0.00 0.00 0.00 4.55
579 580 1.071471 AGCCCAACTTGTGTCCGAG 59.929 57.895 0.00 0.00 0.00 4.63
580 581 1.966451 GCCCAACTTGTGTCCGAGG 60.966 63.158 0.00 0.00 0.00 4.63
581 582 1.450211 CCCAACTTGTGTCCGAGGT 59.550 57.895 0.00 0.00 0.00 3.85
582 583 0.682852 CCCAACTTGTGTCCGAGGTA 59.317 55.000 0.00 0.00 0.00 3.08
583 584 1.071071 CCCAACTTGTGTCCGAGGTAA 59.929 52.381 0.00 0.00 0.00 2.85
584 585 2.485835 CCCAACTTGTGTCCGAGGTAAA 60.486 50.000 0.00 0.00 0.00 2.01
585 586 2.546789 CCAACTTGTGTCCGAGGTAAAC 59.453 50.000 0.00 0.00 0.00 2.01
589 590 3.624410 ACTTGTGTCCGAGGTAAACAAAC 59.376 43.478 0.00 0.00 30.90 2.93
612 613 6.022958 ACAAGGGTTAATTATCCTTTTGCCT 58.977 36.000 19.33 5.96 38.70 4.75
622 623 0.032540 CCTTTTGCCTTCAGTGGTGC 59.967 55.000 0.00 0.00 0.00 5.01
662 663 2.163010 CCTCAGATGCGAATTGTGCTTT 59.837 45.455 0.00 0.00 0.00 3.51
709 710 0.039074 CTCGTTCCGTGAACTCTGCT 60.039 55.000 12.80 0.00 40.05 4.24
752 753 1.987855 CTCGGCCCTTACAGGTGGA 60.988 63.158 0.00 0.00 31.93 4.02
810 811 4.555709 ACGCGTGGCTTGTGGGAA 62.556 61.111 12.93 0.00 0.00 3.97
873 874 0.462375 TATAAGCGGGCGACACACAT 59.538 50.000 0.00 0.00 0.00 3.21
875 876 0.246910 TAAGCGGGCGACACACATTA 59.753 50.000 0.00 0.00 0.00 1.90
991 1011 0.253327 GTTGAGATCCCCTTCGGCTT 59.747 55.000 0.00 0.00 0.00 4.35
1153 1173 0.249114 TTCGTTCTACGTGTGCAGCA 60.249 50.000 0.00 0.00 43.14 4.41
1178 1199 3.297134 TGGGTAAGAATCAGGGCAATC 57.703 47.619 0.00 0.00 0.00 2.67
1203 1224 1.933853 CATTTTCGTGGTCGGGATCTC 59.066 52.381 0.00 0.00 37.69 2.75
1218 1239 2.295885 GATCTCTGAGCAATGGGTTGG 58.704 52.381 0.00 0.00 35.83 3.77
1254 1275 3.138884 TGCAGGTGACATGCTTCTTTA 57.861 42.857 23.05 0.00 44.17 1.85
1336 1357 1.525718 TTGTGCATGCTGCCACGAAT 61.526 50.000 20.33 0.00 44.23 3.34
1443 1464 6.494666 TGTTGAAGAAGAAGGTTAGGAAGA 57.505 37.500 0.00 0.00 0.00 2.87
1557 1582 8.916062 TGTATGGAAATGCATGAATTATGAAGT 58.084 29.630 0.00 0.00 39.21 3.01
1687 1722 8.593492 AAAAAGGAAGAAAAATGAGGAATTCG 57.407 30.769 0.00 0.00 0.00 3.34
1740 1775 3.067180 TGCTCTGCCTTTCTGTCAAAAAG 59.933 43.478 0.00 0.00 34.25 2.27
1757 1794 5.312178 TCAAAAAGAAGGTTCCTCTATGGGA 59.688 40.000 0.00 0.00 36.20 4.37
1850 1889 3.135994 GGTTCTCCTGCGTGTTTTTCTA 58.864 45.455 0.00 0.00 0.00 2.10
1933 1973 7.981225 GCTAATTGAATTATTCCAGAGCCAAAA 59.019 33.333 2.22 0.00 0.00 2.44
1949 1991 8.194769 CAGAGCCAAAAAGTTAAGGTTAGAAAA 58.805 33.333 0.00 0.00 0.00 2.29
1950 1992 8.755028 AGAGCCAAAAAGTTAAGGTTAGAAAAA 58.245 29.630 0.00 0.00 0.00 1.94
2008 2050 8.902806 TCATTACTCCAATTCAAATACACCATC 58.097 33.333 0.00 0.00 0.00 3.51
2047 2089 3.615224 AATGTCATGGAAAATGTGCCC 57.385 42.857 0.00 0.00 0.00 5.36
2147 2198 5.799827 TTTGTCTAAAAATGAAGGGTGGG 57.200 39.130 0.00 0.00 0.00 4.61
2186 2237 2.895424 CGGCTGGGGACTCAAACCT 61.895 63.158 0.00 0.00 0.00 3.50
2218 2269 1.525941 GTTTGTGGCGTTTAGGGCTA 58.474 50.000 0.00 0.00 0.00 3.93
2249 2300 4.036518 ACTGCTAGGACAGATGGAAAGAT 58.963 43.478 4.57 0.00 40.25 2.40
2355 2406 2.972021 ACTGAAATTTTGGAGGGTTGGG 59.028 45.455 0.00 0.00 0.00 4.12
2431 2491 4.386711 GTTAGAGTGGCACTTGGTTTAGT 58.613 43.478 22.98 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.908198 GAAGAGCATGGAGTCCTGGT 59.092 55.000 11.33 11.47 0.00 4.00
1 2 0.179089 CGAAGAGCATGGAGTCCTGG 60.179 60.000 11.33 3.42 0.00 4.45
2 3 0.820226 TCGAAGAGCATGGAGTCCTG 59.180 55.000 11.33 7.45 0.00 3.86
3 4 3.289797 TCGAAGAGCATGGAGTCCT 57.710 52.632 11.33 0.00 0.00 3.85
15 16 2.283676 AGGTTCCGGCCTCGAAGA 60.284 61.111 0.00 0.00 39.00 2.87
17 18 4.388499 GCAGGTTCCGGCCTCGAA 62.388 66.667 0.00 0.00 36.58 3.71
50 51 1.180456 TGCTTCGTCTACAACCCGGA 61.180 55.000 0.73 0.00 0.00 5.14
79 80 0.894184 TCCTCCTCTGTGTGTCCGAC 60.894 60.000 0.00 0.00 0.00 4.79
86 87 2.681778 CGGCCTCCTCCTCTGTGT 60.682 66.667 0.00 0.00 0.00 3.72
87 88 2.286523 AACGGCCTCCTCCTCTGTG 61.287 63.158 0.00 0.00 0.00 3.66
88 89 2.120718 AACGGCCTCCTCCTCTGT 59.879 61.111 0.00 0.00 0.00 3.41
100 101 1.226379 CATCGACCATTGCAACGGC 60.226 57.895 12.35 3.64 41.68 5.68
103 104 1.075542 TCGTCATCGACCATTGCAAC 58.924 50.000 0.00 0.00 41.35 4.17
147 148 4.988716 ACACCCGTCTCGCCTCCA 62.989 66.667 0.00 0.00 0.00 3.86
148 149 4.131088 GACACCCGTCTCGCCTCC 62.131 72.222 0.00 0.00 39.22 4.30
179 180 1.338136 TTCTCCCGAGGGATGCCTTC 61.338 60.000 7.42 0.00 44.24 3.46
205 206 2.358615 GCATGCTGGGACGACACA 60.359 61.111 11.37 0.00 0.00 3.72
219 220 2.233605 TAACTACACGGGCAGCGCAT 62.234 55.000 11.47 0.00 0.00 4.73
221 222 1.087771 ATTAACTACACGGGCAGCGC 61.088 55.000 0.00 0.00 0.00 5.92
238 239 2.945984 CCGCGCGGCATATTCATT 59.054 55.556 38.48 0.00 0.00 2.57
268 269 1.446966 GCTTGTCCTCTCGCACCTC 60.447 63.158 0.00 0.00 0.00 3.85
289 290 4.166011 GCTGCAATCGACGGCCAC 62.166 66.667 2.24 0.00 33.09 5.01
301 302 4.254709 AAGGACTGGTGCGCTGCA 62.255 61.111 9.73 0.00 35.60 4.41
304 305 4.254709 TGCAAGGACTGGTGCGCT 62.255 61.111 9.73 0.00 43.93 5.92
309 310 1.069765 CACGTCTGCAAGGACTGGT 59.930 57.895 4.76 0.00 34.38 4.00
334 335 3.726517 CCAAAGCACCTCACCGCG 61.727 66.667 0.00 0.00 0.00 6.46
339 340 3.565214 TCCCGCCAAAGCACCTCA 61.565 61.111 0.00 0.00 39.83 3.86
363 364 2.351244 TTGCTCGCCGACATCCTCT 61.351 57.895 0.00 0.00 0.00 3.69
364 365 2.167861 GTTGCTCGCCGACATCCTC 61.168 63.158 0.00 0.00 0.00 3.71
375 376 1.891060 GCTGTCGGACAAGTTGCTCG 61.891 60.000 12.54 7.41 0.00 5.03
384 385 0.977627 ATCCATGGAGCTGTCGGACA 60.978 55.000 21.33 10.88 0.00 4.02
403 404 2.136974 TCCATCCATCCATCCATCCA 57.863 50.000 0.00 0.00 0.00 3.41
404 405 2.357881 CCATCCATCCATCCATCCATCC 60.358 54.545 0.00 0.00 0.00 3.51
405 406 2.579400 TCCATCCATCCATCCATCCATC 59.421 50.000 0.00 0.00 0.00 3.51
406 407 2.651190 TCCATCCATCCATCCATCCAT 58.349 47.619 0.00 0.00 0.00 3.41
407 408 2.136974 TCCATCCATCCATCCATCCA 57.863 50.000 0.00 0.00 0.00 3.41
408 409 2.851194 AGATCCATCCATCCATCCATCC 59.149 50.000 0.00 0.00 0.00 3.51
409 410 4.442612 CGTAGATCCATCCATCCATCCATC 60.443 50.000 0.00 0.00 0.00 3.51
410 411 3.453717 CGTAGATCCATCCATCCATCCAT 59.546 47.826 0.00 0.00 0.00 3.41
411 412 2.833943 CGTAGATCCATCCATCCATCCA 59.166 50.000 0.00 0.00 0.00 3.41
412 413 2.419297 GCGTAGATCCATCCATCCATCC 60.419 54.545 0.00 0.00 0.00 3.51
413 414 2.234661 TGCGTAGATCCATCCATCCATC 59.765 50.000 0.00 0.00 0.00 3.51
414 415 2.259917 TGCGTAGATCCATCCATCCAT 58.740 47.619 0.00 0.00 0.00 3.41
415 416 1.715785 TGCGTAGATCCATCCATCCA 58.284 50.000 0.00 0.00 0.00 3.41
424 425 1.138047 CCGACACGTTGCGTAGATCC 61.138 60.000 6.14 0.00 38.32 3.36
428 429 3.475774 GGCCGACACGTTGCGTAG 61.476 66.667 6.14 0.00 38.32 3.51
434 435 3.384532 ATACCCGGCCGACACGTT 61.385 61.111 30.73 0.00 0.00 3.99
440 441 2.585341 AACACACATACCCGGCCGA 61.585 57.895 30.73 7.23 0.00 5.54
451 452 0.171455 GCCAAACCGAACAACACACA 59.829 50.000 0.00 0.00 0.00 3.72
456 457 0.173708 TGTTGGCCAAACCGAACAAC 59.826 50.000 22.47 5.50 43.94 3.32
457 458 0.895530 TTGTTGGCCAAACCGAACAA 59.104 45.000 22.47 17.05 42.26 2.83
458 459 0.457851 CTTGTTGGCCAAACCGAACA 59.542 50.000 22.47 11.11 43.94 3.18
459 460 0.874175 GCTTGTTGGCCAAACCGAAC 60.874 55.000 22.47 8.05 43.94 3.95
460 461 1.323271 TGCTTGTTGGCCAAACCGAA 61.323 50.000 22.47 9.83 43.94 4.30
461 462 1.733402 CTGCTTGTTGGCCAAACCGA 61.733 55.000 22.47 7.86 43.94 4.69
462 463 1.300080 CTGCTTGTTGGCCAAACCG 60.300 57.895 22.47 12.13 43.94 4.44
463 464 0.463620 TTCTGCTTGTTGGCCAAACC 59.536 50.000 22.47 9.72 38.06 3.27
464 465 1.408702 TCTTCTGCTTGTTGGCCAAAC 59.591 47.619 22.47 15.01 39.41 2.93
465 466 1.774110 TCTTCTGCTTGTTGGCCAAA 58.226 45.000 22.47 4.38 31.20 3.28
466 467 1.614903 CATCTTCTGCTTGTTGGCCAA 59.385 47.619 16.05 16.05 0.00 4.52
467 468 1.202915 TCATCTTCTGCTTGTTGGCCA 60.203 47.619 0.00 0.00 0.00 5.36
468 469 1.538047 TCATCTTCTGCTTGTTGGCC 58.462 50.000 0.00 0.00 0.00 5.36
469 470 2.094854 CCTTCATCTTCTGCTTGTTGGC 60.095 50.000 0.00 0.00 0.00 4.52
470 471 2.094854 GCCTTCATCTTCTGCTTGTTGG 60.095 50.000 0.00 0.00 0.00 3.77
471 472 2.413765 CGCCTTCATCTTCTGCTTGTTG 60.414 50.000 0.00 0.00 0.00 3.33
472 473 1.808945 CGCCTTCATCTTCTGCTTGTT 59.191 47.619 0.00 0.00 0.00 2.83
473 474 1.446907 CGCCTTCATCTTCTGCTTGT 58.553 50.000 0.00 0.00 0.00 3.16
474 475 0.731417 CCGCCTTCATCTTCTGCTTG 59.269 55.000 0.00 0.00 0.00 4.01
475 476 0.326264 ACCGCCTTCATCTTCTGCTT 59.674 50.000 0.00 0.00 0.00 3.91
476 477 0.392193 CACCGCCTTCATCTTCTGCT 60.392 55.000 0.00 0.00 0.00 4.24
477 478 1.372087 CCACCGCCTTCATCTTCTGC 61.372 60.000 0.00 0.00 0.00 4.26
478 479 1.372087 GCCACCGCCTTCATCTTCTG 61.372 60.000 0.00 0.00 0.00 3.02
479 480 1.078143 GCCACCGCCTTCATCTTCT 60.078 57.895 0.00 0.00 0.00 2.85
480 481 0.749454 ATGCCACCGCCTTCATCTTC 60.749 55.000 0.00 0.00 0.00 2.87
481 482 1.033746 CATGCCACCGCCTTCATCTT 61.034 55.000 0.00 0.00 0.00 2.40
482 483 1.452651 CATGCCACCGCCTTCATCT 60.453 57.895 0.00 0.00 0.00 2.90
483 484 2.484062 CCATGCCACCGCCTTCATC 61.484 63.158 0.00 0.00 0.00 2.92
484 485 2.440796 CCATGCCACCGCCTTCAT 60.441 61.111 0.00 0.00 0.00 2.57
485 486 4.738998 CCCATGCCACCGCCTTCA 62.739 66.667 0.00 0.00 0.00 3.02
489 490 4.875713 CTACCCCATGCCACCGCC 62.876 72.222 0.00 0.00 0.00 6.13
491 492 4.108299 TGCTACCCCATGCCACCG 62.108 66.667 0.00 0.00 0.00 4.94
492 493 2.124151 CTGCTACCCCATGCCACC 60.124 66.667 0.00 0.00 0.00 4.61
493 494 1.153086 CTCTGCTACCCCATGCCAC 60.153 63.158 0.00 0.00 0.00 5.01
494 495 1.207488 AACTCTGCTACCCCATGCCA 61.207 55.000 0.00 0.00 0.00 4.92
495 496 0.749454 CAACTCTGCTACCCCATGCC 60.749 60.000 0.00 0.00 0.00 4.40
496 497 0.749454 CCAACTCTGCTACCCCATGC 60.749 60.000 0.00 0.00 0.00 4.06
497 498 0.911769 TCCAACTCTGCTACCCCATG 59.088 55.000 0.00 0.00 0.00 3.66
498 499 1.771255 GATCCAACTCTGCTACCCCAT 59.229 52.381 0.00 0.00 0.00 4.00
499 500 1.204146 GATCCAACTCTGCTACCCCA 58.796 55.000 0.00 0.00 0.00 4.96
500 501 0.470341 GGATCCAACTCTGCTACCCC 59.530 60.000 6.95 0.00 0.00 4.95
501 502 1.204146 TGGATCCAACTCTGCTACCC 58.796 55.000 13.46 0.00 0.00 3.69
502 503 3.350219 TTTGGATCCAACTCTGCTACC 57.650 47.619 27.04 0.00 35.46 3.18
503 504 3.065925 GCATTTGGATCCAACTCTGCTAC 59.934 47.826 30.59 14.79 35.27 3.58
504 505 3.282021 GCATTTGGATCCAACTCTGCTA 58.718 45.455 30.59 17.65 35.27 3.49
505 506 2.097825 GCATTTGGATCCAACTCTGCT 58.902 47.619 30.59 12.84 35.27 4.24
506 507 1.202222 CGCATTTGGATCCAACTCTGC 60.202 52.381 29.32 29.32 35.46 4.26
507 508 1.202222 GCGCATTTGGATCCAACTCTG 60.202 52.381 27.04 22.52 35.46 3.35
508 509 1.098050 GCGCATTTGGATCCAACTCT 58.902 50.000 27.04 11.77 35.46 3.24
509 510 1.098050 AGCGCATTTGGATCCAACTC 58.902 50.000 27.04 16.43 35.46 3.01
510 511 1.549203 AAGCGCATTTGGATCCAACT 58.451 45.000 27.04 19.06 35.46 3.16
511 512 1.994779 CAAAGCGCATTTGGATCCAAC 59.005 47.619 27.04 14.77 43.88 3.77
512 513 1.891811 TCAAAGCGCATTTGGATCCAA 59.108 42.857 23.63 23.63 46.93 3.53
513 514 1.543607 TCAAAGCGCATTTGGATCCA 58.456 45.000 23.06 11.44 46.93 3.41
514 515 2.652941 TTCAAAGCGCATTTGGATCC 57.347 45.000 23.06 4.20 46.93 3.36
515 516 3.307782 CCAATTCAAAGCGCATTTGGATC 59.692 43.478 23.06 0.00 44.90 3.36
517 518 2.298446 TCCAATTCAAAGCGCATTTGGA 59.702 40.909 23.06 17.98 46.93 3.53
518 519 2.686235 TCCAATTCAAAGCGCATTTGG 58.314 42.857 23.06 16.36 46.93 3.28
519 520 4.389382 TGAATCCAATTCAAAGCGCATTTG 59.611 37.500 19.72 19.72 45.57 2.32
520 521 4.567971 TGAATCCAATTCAAAGCGCATTT 58.432 34.783 11.47 4.44 45.57 2.32
521 522 4.191033 TGAATCCAATTCAAAGCGCATT 57.809 36.364 11.47 0.00 45.57 3.56
522 523 3.872511 TGAATCCAATTCAAAGCGCAT 57.127 38.095 11.47 0.00 45.57 4.73
529 530 6.963045 GCGACCGCAATGAATCCAATTCAA 62.963 45.833 9.73 0.00 45.32 2.69
530 531 5.569008 GCGACCGCAATGAATCCAATTCA 62.569 47.826 9.73 4.94 45.78 2.57
531 532 2.719798 CGACCGCAATGAATCCAATTC 58.280 47.619 0.00 0.00 39.70 2.17
532 533 1.202290 GCGACCGCAATGAATCCAATT 60.202 47.619 9.73 0.00 41.49 2.32
533 534 0.381801 GCGACCGCAATGAATCCAAT 59.618 50.000 9.73 0.00 41.49 3.16
534 535 1.800032 GCGACCGCAATGAATCCAA 59.200 52.632 9.73 0.00 41.49 3.53
535 536 3.496711 GCGACCGCAATGAATCCA 58.503 55.556 9.73 0.00 41.49 3.41
551 552 4.043200 GTTGGGCTGCCGACTTGC 62.043 66.667 13.40 0.00 0.00 4.01
552 553 1.898574 AAGTTGGGCTGCCGACTTG 60.899 57.895 27.58 0.00 41.34 3.16
553 554 1.898574 CAAGTTGGGCTGCCGACTT 60.899 57.895 24.61 24.61 43.02 3.01
554 555 2.281761 CAAGTTGGGCTGCCGACT 60.282 61.111 17.42 17.42 36.10 4.18
555 556 2.594592 ACAAGTTGGGCTGCCGAC 60.595 61.111 13.40 13.70 0.00 4.79
556 557 2.594303 CACAAGTTGGGCTGCCGA 60.594 61.111 13.40 5.79 0.00 5.54
557 558 2.906897 ACACAAGTTGGGCTGCCG 60.907 61.111 13.40 0.00 0.00 5.69
558 559 2.564721 GGACACAAGTTGGGCTGCC 61.565 63.158 11.05 11.05 0.00 4.85
559 560 2.908073 CGGACACAAGTTGGGCTGC 61.908 63.158 4.63 0.00 0.00 5.25
560 561 1.227823 TCGGACACAAGTTGGGCTG 60.228 57.895 4.63 3.58 0.00 4.85
561 562 1.071471 CTCGGACACAAGTTGGGCT 59.929 57.895 4.63 0.00 0.00 5.19
562 563 1.966451 CCTCGGACACAAGTTGGGC 60.966 63.158 4.63 0.00 0.00 5.36
563 564 0.682852 TACCTCGGACACAAGTTGGG 59.317 55.000 2.79 2.79 0.00 4.12
564 565 2.536761 TTACCTCGGACACAAGTTGG 57.463 50.000 7.96 0.00 0.00 3.77
565 566 3.199677 TGTTTACCTCGGACACAAGTTG 58.800 45.455 0.00 0.00 0.00 3.16
566 567 3.547054 TGTTTACCTCGGACACAAGTT 57.453 42.857 0.00 0.00 0.00 2.66
567 568 3.547054 TTGTTTACCTCGGACACAAGT 57.453 42.857 0.00 0.00 0.00 3.16
568 569 3.623960 TGTTTGTTTACCTCGGACACAAG 59.376 43.478 0.00 0.00 0.00 3.16
569 570 3.607741 TGTTTGTTTACCTCGGACACAA 58.392 40.909 0.00 0.00 0.00 3.33
570 571 3.263489 TGTTTGTTTACCTCGGACACA 57.737 42.857 0.00 0.00 0.00 3.72
571 572 3.002965 CCTTGTTTGTTTACCTCGGACAC 59.997 47.826 0.00 0.00 0.00 3.67
572 573 3.207778 CCTTGTTTGTTTACCTCGGACA 58.792 45.455 0.00 0.00 0.00 4.02
573 574 2.551032 CCCTTGTTTGTTTACCTCGGAC 59.449 50.000 0.00 0.00 0.00 4.79
574 575 2.173143 ACCCTTGTTTGTTTACCTCGGA 59.827 45.455 0.00 0.00 0.00 4.55
575 576 2.578786 ACCCTTGTTTGTTTACCTCGG 58.421 47.619 0.00 0.00 0.00 4.63
576 577 5.754543 TTAACCCTTGTTTGTTTACCTCG 57.245 39.130 0.00 0.00 35.87 4.63
577 578 9.850628 GATAATTAACCCTTGTTTGTTTACCTC 57.149 33.333 0.00 0.00 35.87 3.85
578 579 8.809066 GGATAATTAACCCTTGTTTGTTTACCT 58.191 33.333 0.24 0.00 35.87 3.08
579 580 8.809066 AGGATAATTAACCCTTGTTTGTTTACC 58.191 33.333 8.09 0.00 35.87 2.85
583 584 9.554395 CAAAAGGATAATTAACCCTTGTTTGTT 57.446 29.630 17.93 9.26 39.97 2.83
584 585 7.659799 GCAAAAGGATAATTAACCCTTGTTTGT 59.340 33.333 20.94 9.03 39.97 2.83
585 586 7.119116 GGCAAAAGGATAATTAACCCTTGTTTG 59.881 37.037 17.93 18.30 39.97 2.93
589 590 6.544928 AGGCAAAAGGATAATTAACCCTTG 57.455 37.500 17.93 16.37 39.97 3.61
622 623 0.037975 GGCAAAACTGAGCACATGGG 60.038 55.000 0.00 0.00 0.00 4.00
662 663 0.250553 CACGGACTAGGGGCAAAACA 60.251 55.000 0.00 0.00 0.00 2.83
709 710 0.469331 AGGTTGACCTGACGGAGACA 60.469 55.000 0.97 0.00 46.55 3.41
752 753 2.743718 CGTCTCTGCCACCTGGTT 59.256 61.111 0.00 0.00 37.57 3.67
810 811 0.600557 CTCAACGACTCTCTGCTGGT 59.399 55.000 0.00 0.00 0.00 4.00
873 874 0.036765 GTCACCATGGTCACCGCTAA 60.037 55.000 16.53 0.00 0.00 3.09
875 876 2.347490 GTCACCATGGTCACCGCT 59.653 61.111 16.53 0.00 0.00 5.52
991 1011 1.107114 GAGGAAGACATGGAGCTCGA 58.893 55.000 7.83 3.70 0.00 4.04
1062 1082 1.797933 CCGCAGACAGACGAAGACG 60.798 63.158 0.00 0.00 45.75 4.18
1153 1173 3.269381 TGCCCTGATTCTTACCCATTCTT 59.731 43.478 0.00 0.00 0.00 2.52
1203 1224 1.171308 CAGACCAACCCATTGCTCAG 58.829 55.000 0.00 0.00 34.17 3.35
1218 1239 2.287788 CCTGCATGAACACCAAACAGAC 60.288 50.000 0.00 0.00 35.16 3.51
1254 1275 0.749454 GCCAGAGCATCGACCCAAAT 60.749 55.000 0.00 0.00 42.67 2.32
1279 1300 3.141398 TCTTGCAGTTCATTCACCAGAC 58.859 45.455 0.00 0.00 0.00 3.51
1443 1464 6.543831 GGTATTGGTAGTGCTTGATCTTCAAT 59.456 38.462 0.00 0.00 35.59 2.57
1670 1705 6.901081 AGTTTCCGAATTCCTCATTTTTCT 57.099 33.333 0.00 0.00 0.00 2.52
1671 1706 7.946655 AAAGTTTCCGAATTCCTCATTTTTC 57.053 32.000 0.00 0.00 0.00 2.29
1673 1708 7.496747 TCAAAAGTTTCCGAATTCCTCATTTT 58.503 30.769 0.00 0.00 0.00 1.82
1687 1722 7.424227 TGCATTTCATTGATCAAAAGTTTCC 57.576 32.000 13.09 0.55 0.00 3.13
1740 1775 4.569719 TTTGTCCCATAGAGGAACCTTC 57.430 45.455 0.00 0.00 41.22 3.46
1757 1794 2.028112 TGGCTCTACGCTCTGAATTTGT 60.028 45.455 0.00 0.00 39.13 2.83
1836 1874 6.912591 AGAACAGAAAATAGAAAAACACGCAG 59.087 34.615 0.00 0.00 0.00 5.18
1983 2025 8.685427 TGATGGTGTATTTGAATTGGAGTAATG 58.315 33.333 0.00 0.00 0.00 1.90
2181 2232 2.680066 CCCACGAGGTCCTAGGTTT 58.320 57.895 9.08 0.00 0.00 3.27
2218 2269 2.169352 CTGTCCTAGCAGTTACCAGCAT 59.831 50.000 0.58 0.00 0.00 3.79
2249 2300 2.990284 TCCTTCCCTACCCATGTCAAAA 59.010 45.455 0.00 0.00 0.00 2.44
2355 2406 1.265635 TGGCAGTGCAAACATACGTTC 59.734 47.619 18.61 0.00 32.91 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.