Multiple sequence alignment - TraesCS5A01G547300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G547300 chr5A 100.000 6891 0 0 814 7704 701069899 701076789 0.000000e+00 12726.0
1 TraesCS5A01G547300 chr5A 100.000 472 0 0 1 472 701069086 701069557 0.000000e+00 872.0
2 TraesCS5A01G547300 chrUn 94.724 3279 131 21 4461 7704 110796137 110799408 0.000000e+00 5059.0
3 TraesCS5A01G547300 chrUn 89.193 2554 146 53 1565 4049 110793292 110795784 0.000000e+00 3068.0
4 TraesCS5A01G547300 chrUn 83.203 768 87 28 814 1564 110792447 110793189 0.000000e+00 665.0
5 TraesCS5A01G547300 chrUn 95.683 278 6 2 196 472 110792184 110792456 7.100000e-120 442.0
6 TraesCS5A01G547300 chrUn 84.615 286 31 10 4182 4459 110795816 110796096 9.850000e-69 272.0
7 TraesCS5A01G547300 chrUn 97.541 122 1 2 196 315 110791879 110792000 2.820000e-49 207.0
8 TraesCS5A01G547300 chr4B 94.667 2569 110 15 4461 7005 660726685 660729250 0.000000e+00 3960.0
9 TraesCS5A01G547300 chr4B 87.351 2854 188 81 1689 4459 660723881 660726644 0.000000e+00 3110.0
10 TraesCS5A01G547300 chr4B 89.961 767 39 14 814 1566 660722946 660723688 0.000000e+00 955.0
11 TraesCS5A01G547300 chr4B 89.916 357 25 3 6503 6848 660800981 660801337 4.240000e-122 449.0
12 TraesCS5A01G547300 chr4B 89.527 296 11 8 196 472 660722661 660722955 2.640000e-94 357.0
13 TraesCS5A01G547300 chr4B 83.636 165 20 6 6846 7005 660867304 660867466 1.730000e-31 148.0
14 TraesCS5A01G547300 chr3B 88.793 348 26 6 2970 3316 734997575 734997910 1.550000e-111 414.0
15 TraesCS5A01G547300 chr3B 83.175 422 48 17 3317 3730 734997961 734998367 1.580000e-96 364.0
16 TraesCS5A01G547300 chr3B 85.204 196 24 3 5030 5225 824291269 824291459 6.100000e-46 196.0
17 TraesCS5A01G547300 chr5D 88.539 349 26 3 2970 3316 539737241 539737577 2.000000e-110 411.0
18 TraesCS5A01G547300 chr5D 88.411 302 27 7 3431 3730 539737769 539738064 2.640000e-94 357.0
19 TraesCS5A01G547300 chr5D 85.393 89 7 4 3784 3872 539738091 539738173 3.830000e-13 87.9
20 TraesCS5A01G547300 chr1A 87.679 349 28 7 2970 3316 17869988 17870323 7.250000e-105 392.0
21 TraesCS5A01G547300 chr1A 89.109 303 24 7 3430 3730 17870514 17870809 1.220000e-97 368.0
22 TraesCS5A01G547300 chr3D 81.933 476 52 18 5256 5720 615225463 615225915 9.440000e-99 372.0
23 TraesCS5A01G547300 chr3D 90.106 283 20 6 3449 3730 382808992 382809267 2.040000e-95 361.0
24 TraesCS5A01G547300 chr3D 83.099 142 16 7 5757 5893 615225919 615226057 1.050000e-23 122.0
25 TraesCS5A01G547300 chr3D 84.091 88 9 3 3784 3871 382809294 382809376 6.410000e-11 80.5
26 TraesCS5A01G547300 chr7D 90.106 283 20 6 3449 3730 124502667 124502392 2.040000e-95 361.0
27 TraesCS5A01G547300 chr7D 89.753 283 21 6 3449 3730 280488 280763 9.510000e-94 355.0
28 TraesCS5A01G547300 chr7D 85.556 90 7 4 3782 3871 280788 280871 1.060000e-13 89.8
29 TraesCS5A01G547300 chr7D 84.783 92 9 3 3784 3875 124502365 124502279 3.830000e-13 87.9
30 TraesCS5A01G547300 chr6D 89.753 283 20 6 3449 3730 108244419 108244693 3.420000e-93 353.0
31 TraesCS5A01G547300 chr6D 85.714 77 6 3 3795 3871 108244730 108244801 8.290000e-10 76.8
32 TraesCS5A01G547300 chr4D 89.399 283 22 6 3449 3730 484193369 484193644 4.420000e-92 350.0
33 TraesCS5A01G547300 chr4D 85.526 76 6 3 3796 3871 484193682 484193752 2.980000e-09 75.0
34 TraesCS5A01G547300 chr3A 90.196 153 15 0 2970 3122 94145870 94146022 4.710000e-47 200.0
35 TraesCS5A01G547300 chr3A 85.279 197 15 6 3122 3316 94148076 94148260 2.840000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G547300 chr5A 701069086 701076789 7703 False 6799.000000 12726 100.000000 1 7704 2 chr5A.!!$F1 7703
1 TraesCS5A01G547300 chrUn 110791879 110799408 7529 False 1618.833333 5059 90.826500 196 7704 6 chrUn.!!$F1 7508
2 TraesCS5A01G547300 chr4B 660722661 660729250 6589 False 2095.500000 3960 90.376500 196 7005 4 chr4B.!!$F3 6809
3 TraesCS5A01G547300 chr3B 734997575 734998367 792 False 389.000000 414 85.984000 2970 3730 2 chr3B.!!$F2 760
4 TraesCS5A01G547300 chr5D 539737241 539738173 932 False 285.300000 411 87.447667 2970 3872 3 chr5D.!!$F1 902
5 TraesCS5A01G547300 chr1A 17869988 17870809 821 False 380.000000 392 88.394000 2970 3730 2 chr1A.!!$F1 760
6 TraesCS5A01G547300 chr3D 615225463 615226057 594 False 247.000000 372 82.516000 5256 5893 2 chr3D.!!$F2 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.030638 CCCACACAAAAACTGAGGCG 59.969 55.000 0.00 0.00 0.00 5.52 F
985 1331 0.033504 TCCGTGAGTCCAAGAACTGC 59.966 55.000 0.00 0.00 0.00 4.40 F
1300 1657 0.723981 GCGACCTCAGTCAGATTTGC 59.276 55.000 0.00 0.00 43.73 3.68 F
1492 1856 2.184322 GGTGCGCTACTGCTGCTA 59.816 61.111 9.73 0.00 38.69 3.49 F
3193 3711 1.547372 GACATGGGTGCTTTGATTGCT 59.453 47.619 0.00 0.00 0.00 3.91 F
4228 4847 0.668535 GGGGTCAACAGCTGAAACAC 59.331 55.000 23.35 15.42 35.22 3.32 F
4543 5208 0.883833 CCACTTCTGGTGCAATGGAC 59.116 55.000 0.00 0.00 44.08 4.02 F
6421 7117 1.156736 CCGACCGCAAGATCAAACTT 58.843 50.000 0.00 0.00 43.02 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 2368 0.114954 AGCCCATTCCTTTGCTCCAA 59.885 50.000 0.0 0.00 0.00 3.53 R
1953 2421 1.135859 GCATCGAGAAGCCTTGTGTTG 60.136 52.381 0.0 0.00 0.00 3.33 R
3034 3550 1.003580 GCTTGTGGGACATCTCCTTGA 59.996 52.381 0.0 0.00 44.52 3.02 R
3443 4014 0.379669 CAAATGAGATGACAGCGGCC 59.620 55.000 0.0 0.00 0.00 6.13 R
4543 5208 1.135575 GGTTTCAGAAGATTGCCAGCG 60.136 52.381 0.0 0.00 0.00 5.18 R
5530 6218 0.039180 ACTTGGAAACCGGAATCCCC 59.961 55.000 22.0 10.76 34.68 4.81 R
6442 7138 0.401738 CAAGGCTTCCCAGGAACTCA 59.598 55.000 0.0 0.00 34.60 3.41 R
7348 8078 0.240945 GTGGTTGCCCTTTGATGTCG 59.759 55.000 0.0 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.294780 CGGGAGCATGGATAGGAGC 59.705 63.158 0.00 0.00 0.00 4.70
19 20 1.475169 CGGGAGCATGGATAGGAGCA 61.475 60.000 0.00 0.00 0.00 4.26
20 21 0.036022 GGGAGCATGGATAGGAGCAC 59.964 60.000 0.00 0.00 0.00 4.40
21 22 0.320247 GGAGCATGGATAGGAGCACG 60.320 60.000 0.00 0.00 0.00 5.34
22 23 0.948141 GAGCATGGATAGGAGCACGC 60.948 60.000 0.00 0.00 0.00 5.34
23 24 1.070445 GCATGGATAGGAGCACGCT 59.930 57.895 0.00 0.00 0.00 5.07
24 25 0.318441 GCATGGATAGGAGCACGCTA 59.682 55.000 0.00 0.00 0.00 4.26
25 26 1.671261 GCATGGATAGGAGCACGCTAG 60.671 57.143 0.00 0.00 0.00 3.42
26 27 1.067283 CATGGATAGGAGCACGCTAGG 60.067 57.143 0.00 0.00 0.00 3.02
27 28 0.827925 TGGATAGGAGCACGCTAGGG 60.828 60.000 5.05 5.05 0.00 3.53
28 29 0.828343 GGATAGGAGCACGCTAGGGT 60.828 60.000 6.62 6.62 0.00 4.34
29 30 1.547223 GGATAGGAGCACGCTAGGGTA 60.547 57.143 12.67 0.00 0.00 3.69
30 31 1.813786 GATAGGAGCACGCTAGGGTAG 59.186 57.143 12.67 8.35 0.00 3.18
31 32 0.178998 TAGGAGCACGCTAGGGTAGG 60.179 60.000 12.67 2.46 0.00 3.18
32 33 2.417936 GAGCACGCTAGGGTAGGC 59.582 66.667 12.67 12.67 0.00 3.93
33 34 2.363795 AGCACGCTAGGGTAGGCA 60.364 61.111 19.94 0.00 0.00 4.75
34 35 1.749334 GAGCACGCTAGGGTAGGCAT 61.749 60.000 19.94 8.66 0.00 4.40
35 36 0.469331 AGCACGCTAGGGTAGGCATA 60.469 55.000 19.94 0.00 0.00 3.14
36 37 0.319641 GCACGCTAGGGTAGGCATAC 60.320 60.000 12.67 0.00 0.00 2.39
46 47 2.150397 GTAGGCATACCCTAGCGTTG 57.850 55.000 0.00 0.00 46.80 4.10
47 48 1.684983 GTAGGCATACCCTAGCGTTGA 59.315 52.381 0.00 0.00 46.80 3.18
48 49 1.200519 AGGCATACCCTAGCGTTGAA 58.799 50.000 0.00 0.00 44.08 2.69
49 50 1.139058 AGGCATACCCTAGCGTTGAAG 59.861 52.381 0.00 0.00 44.08 3.02
50 51 1.583054 GCATACCCTAGCGTTGAAGG 58.417 55.000 0.00 0.00 0.00 3.46
56 57 0.179081 CCTAGCGTTGAAGGGGTAGC 60.179 60.000 0.00 0.00 33.93 3.58
57 58 0.527817 CTAGCGTTGAAGGGGTAGCG 60.528 60.000 0.00 0.00 0.00 4.26
58 59 1.952102 TAGCGTTGAAGGGGTAGCGG 61.952 60.000 0.00 0.00 0.00 5.52
59 60 2.975536 CGTTGAAGGGGTAGCGGA 59.024 61.111 0.00 0.00 0.00 5.54
60 61 1.153628 CGTTGAAGGGGTAGCGGAG 60.154 63.158 0.00 0.00 0.00 4.63
61 62 1.885163 CGTTGAAGGGGTAGCGGAGT 61.885 60.000 0.00 0.00 0.00 3.85
62 63 1.188863 GTTGAAGGGGTAGCGGAGTA 58.811 55.000 0.00 0.00 0.00 2.59
63 64 1.134877 GTTGAAGGGGTAGCGGAGTAC 60.135 57.143 0.00 0.00 0.00 2.73
64 65 0.685458 TGAAGGGGTAGCGGAGTACC 60.685 60.000 0.00 0.00 41.75 3.34
65 66 0.685458 GAAGGGGTAGCGGAGTACCA 60.685 60.000 8.68 0.00 43.97 3.25
66 67 0.252375 AAGGGGTAGCGGAGTACCAA 60.252 55.000 8.68 0.00 43.97 3.67
67 68 0.252375 AGGGGTAGCGGAGTACCAAA 60.252 55.000 8.68 0.00 43.97 3.28
68 69 0.107993 GGGGTAGCGGAGTACCAAAC 60.108 60.000 8.68 0.00 43.97 2.93
69 70 0.107993 GGGTAGCGGAGTACCAAACC 60.108 60.000 8.68 0.00 43.97 3.27
70 71 0.107993 GGTAGCGGAGTACCAAACCC 60.108 60.000 0.00 0.00 42.03 4.11
71 72 0.107993 GTAGCGGAGTACCAAACCCC 60.108 60.000 0.00 0.00 35.59 4.95
72 73 0.544833 TAGCGGAGTACCAAACCCCA 60.545 55.000 0.00 0.00 35.59 4.96
73 74 1.673337 GCGGAGTACCAAACCCCAC 60.673 63.158 0.00 0.00 35.59 4.61
74 75 2.063774 CGGAGTACCAAACCCCACT 58.936 57.895 0.00 0.00 35.59 4.00
75 76 0.321298 CGGAGTACCAAACCCCACTG 60.321 60.000 0.00 0.00 35.59 3.66
76 77 0.037734 GGAGTACCAAACCCCACTGG 59.962 60.000 0.00 0.00 38.77 4.00
86 87 2.757077 CCCACTGGTTCCTCACCC 59.243 66.667 0.00 0.00 46.68 4.61
87 88 2.757077 CCACTGGTTCCTCACCCC 59.243 66.667 0.00 0.00 46.68 4.95
88 89 2.757077 CACTGGTTCCTCACCCCC 59.243 66.667 0.00 0.00 46.68 5.40
89 90 2.153401 CACTGGTTCCTCACCCCCA 61.153 63.158 0.00 0.00 46.68 4.96
90 91 2.154074 ACTGGTTCCTCACCCCCAC 61.154 63.158 0.00 0.00 46.68 4.61
91 92 2.039298 TGGTTCCTCACCCCCACA 60.039 61.111 0.00 0.00 46.68 4.17
92 93 2.411765 CTGGTTCCTCACCCCCACAC 62.412 65.000 0.00 0.00 46.68 3.82
93 94 2.457323 GGTTCCTCACCCCCACACA 61.457 63.158 0.00 0.00 40.19 3.72
94 95 1.534697 GTTCCTCACCCCCACACAA 59.465 57.895 0.00 0.00 0.00 3.33
95 96 0.106419 GTTCCTCACCCCCACACAAA 60.106 55.000 0.00 0.00 0.00 2.83
96 97 0.631753 TTCCTCACCCCCACACAAAA 59.368 50.000 0.00 0.00 0.00 2.44
97 98 0.631753 TCCTCACCCCCACACAAAAA 59.368 50.000 0.00 0.00 0.00 1.94
98 99 0.750249 CCTCACCCCCACACAAAAAC 59.250 55.000 0.00 0.00 0.00 2.43
99 100 1.687996 CCTCACCCCCACACAAAAACT 60.688 52.381 0.00 0.00 0.00 2.66
100 101 1.408702 CTCACCCCCACACAAAAACTG 59.591 52.381 0.00 0.00 0.00 3.16
101 102 1.006043 TCACCCCCACACAAAAACTGA 59.994 47.619 0.00 0.00 0.00 3.41
102 103 1.408702 CACCCCCACACAAAAACTGAG 59.591 52.381 0.00 0.00 0.00 3.35
103 104 1.039856 CCCCCACACAAAAACTGAGG 58.960 55.000 0.00 0.00 0.00 3.86
104 105 0.389025 CCCCACACAAAAACTGAGGC 59.611 55.000 0.00 0.00 0.00 4.70
105 106 0.030638 CCCACACAAAAACTGAGGCG 59.969 55.000 0.00 0.00 0.00 5.52
106 107 1.021202 CCACACAAAAACTGAGGCGA 58.979 50.000 0.00 0.00 0.00 5.54
107 108 1.268539 CCACACAAAAACTGAGGCGAC 60.269 52.381 0.00 0.00 0.00 5.19
108 109 1.400142 CACACAAAAACTGAGGCGACA 59.600 47.619 0.00 0.00 0.00 4.35
109 110 2.088423 ACACAAAAACTGAGGCGACAA 58.912 42.857 0.00 0.00 0.00 3.18
110 111 2.490115 ACACAAAAACTGAGGCGACAAA 59.510 40.909 0.00 0.00 0.00 2.83
111 112 3.057174 ACACAAAAACTGAGGCGACAAAA 60.057 39.130 0.00 0.00 0.00 2.44
112 113 3.303229 CACAAAAACTGAGGCGACAAAAC 59.697 43.478 0.00 0.00 0.00 2.43
113 114 2.857748 CAAAAACTGAGGCGACAAAACC 59.142 45.455 0.00 0.00 0.00 3.27
114 115 1.757682 AAACTGAGGCGACAAAACCA 58.242 45.000 0.00 0.00 0.00 3.67
115 116 1.021968 AACTGAGGCGACAAAACCAC 58.978 50.000 0.00 0.00 0.00 4.16
116 117 0.180406 ACTGAGGCGACAAAACCACT 59.820 50.000 0.00 0.00 0.00 4.00
117 118 0.868406 CTGAGGCGACAAAACCACTC 59.132 55.000 0.00 0.00 0.00 3.51
118 119 0.534203 TGAGGCGACAAAACCACTCC 60.534 55.000 0.00 0.00 0.00 3.85
119 120 1.228154 AGGCGACAAAACCACTCCC 60.228 57.895 0.00 0.00 0.00 4.30
120 121 2.265904 GGCGACAAAACCACTCCCC 61.266 63.158 0.00 0.00 0.00 4.81
121 122 1.527380 GCGACAAAACCACTCCCCA 60.527 57.895 0.00 0.00 0.00 4.96
122 123 1.792118 GCGACAAAACCACTCCCCAC 61.792 60.000 0.00 0.00 0.00 4.61
123 124 0.179029 CGACAAAACCACTCCCCACT 60.179 55.000 0.00 0.00 0.00 4.00
124 125 1.071071 CGACAAAACCACTCCCCACTA 59.929 52.381 0.00 0.00 0.00 2.74
125 126 2.290071 CGACAAAACCACTCCCCACTAT 60.290 50.000 0.00 0.00 0.00 2.12
126 127 3.763057 GACAAAACCACTCCCCACTATT 58.237 45.455 0.00 0.00 0.00 1.73
127 128 4.149598 GACAAAACCACTCCCCACTATTT 58.850 43.478 0.00 0.00 0.00 1.40
128 129 4.149598 ACAAAACCACTCCCCACTATTTC 58.850 43.478 0.00 0.00 0.00 2.17
129 130 3.451402 AAACCACTCCCCACTATTTCC 57.549 47.619 0.00 0.00 0.00 3.13
130 131 2.361085 ACCACTCCCCACTATTTCCT 57.639 50.000 0.00 0.00 0.00 3.36
131 132 2.644151 ACCACTCCCCACTATTTCCTT 58.356 47.619 0.00 0.00 0.00 3.36
132 133 2.993863 ACCACTCCCCACTATTTCCTTT 59.006 45.455 0.00 0.00 0.00 3.11
133 134 3.010250 ACCACTCCCCACTATTTCCTTTC 59.990 47.826 0.00 0.00 0.00 2.62
134 135 3.270877 CACTCCCCACTATTTCCTTTCG 58.729 50.000 0.00 0.00 0.00 3.46
135 136 2.289565 CTCCCCACTATTTCCTTTCGC 58.710 52.381 0.00 0.00 0.00 4.70
136 137 1.014352 CCCCACTATTTCCTTTCGCG 58.986 55.000 0.00 0.00 0.00 5.87
137 138 1.677820 CCCCACTATTTCCTTTCGCGT 60.678 52.381 5.77 0.00 0.00 6.01
138 139 1.396996 CCCACTATTTCCTTTCGCGTG 59.603 52.381 5.77 0.00 0.00 5.34
139 140 2.343101 CCACTATTTCCTTTCGCGTGA 58.657 47.619 5.77 0.00 0.00 4.35
140 141 2.093783 CCACTATTTCCTTTCGCGTGAC 59.906 50.000 5.77 0.00 0.00 3.67
141 142 2.993899 CACTATTTCCTTTCGCGTGACT 59.006 45.455 5.77 0.00 0.00 3.41
142 143 3.060895 CACTATTTCCTTTCGCGTGACTC 59.939 47.826 5.77 0.00 0.00 3.36
143 144 1.439679 ATTTCCTTTCGCGTGACTCC 58.560 50.000 5.77 0.00 0.00 3.85
144 145 0.942410 TTTCCTTTCGCGTGACTCCG 60.942 55.000 5.77 0.00 0.00 4.63
145 146 1.798234 TTCCTTTCGCGTGACTCCGA 61.798 55.000 5.77 0.00 0.00 4.55
146 147 1.372499 CCTTTCGCGTGACTCCGAA 60.372 57.895 5.77 4.29 41.17 4.30
148 149 3.204505 TTTCGCGTGACTCCGAAAT 57.795 47.368 5.77 0.00 45.21 2.17
149 150 1.065358 TTTCGCGTGACTCCGAAATC 58.935 50.000 5.77 0.00 45.21 2.17
150 151 0.242825 TTCGCGTGACTCCGAAATCT 59.757 50.000 5.77 0.00 40.11 2.40
151 152 0.179171 TCGCGTGACTCCGAAATCTC 60.179 55.000 5.77 0.00 0.00 2.75
152 153 0.456142 CGCGTGACTCCGAAATCTCA 60.456 55.000 0.00 0.00 0.00 3.27
153 154 1.710013 GCGTGACTCCGAAATCTCAA 58.290 50.000 0.00 0.00 0.00 3.02
154 155 2.271800 GCGTGACTCCGAAATCTCAAT 58.728 47.619 0.00 0.00 0.00 2.57
155 156 2.673368 GCGTGACTCCGAAATCTCAATT 59.327 45.455 0.00 0.00 0.00 2.32
156 157 3.242123 GCGTGACTCCGAAATCTCAATTC 60.242 47.826 0.00 0.00 0.00 2.17
157 158 3.307242 CGTGACTCCGAAATCTCAATTCC 59.693 47.826 0.00 0.00 0.00 3.01
158 159 3.623510 GTGACTCCGAAATCTCAATTCCC 59.376 47.826 0.00 0.00 0.00 3.97
159 160 3.519510 TGACTCCGAAATCTCAATTCCCT 59.480 43.478 0.00 0.00 0.00 4.20
160 161 4.019321 TGACTCCGAAATCTCAATTCCCTT 60.019 41.667 0.00 0.00 0.00 3.95
161 162 4.518249 ACTCCGAAATCTCAATTCCCTTC 58.482 43.478 0.00 0.00 0.00 3.46
162 163 4.226168 ACTCCGAAATCTCAATTCCCTTCT 59.774 41.667 0.00 0.00 0.00 2.85
163 164 4.770795 TCCGAAATCTCAATTCCCTTCTC 58.229 43.478 0.00 0.00 0.00 2.87
164 165 3.879892 CCGAAATCTCAATTCCCTTCTCC 59.120 47.826 0.00 0.00 0.00 3.71
165 166 4.384647 CCGAAATCTCAATTCCCTTCTCCT 60.385 45.833 0.00 0.00 0.00 3.69
166 167 4.813697 CGAAATCTCAATTCCCTTCTCCTC 59.186 45.833 0.00 0.00 0.00 3.71
167 168 5.396213 CGAAATCTCAATTCCCTTCTCCTCT 60.396 44.000 0.00 0.00 0.00 3.69
168 169 5.628797 AATCTCAATTCCCTTCTCCTCTC 57.371 43.478 0.00 0.00 0.00 3.20
169 170 3.379452 TCTCAATTCCCTTCTCCTCTCC 58.621 50.000 0.00 0.00 0.00 3.71
170 171 3.110705 CTCAATTCCCTTCTCCTCTCCA 58.889 50.000 0.00 0.00 0.00 3.86
171 172 2.840651 TCAATTCCCTTCTCCTCTCCAC 59.159 50.000 0.00 0.00 0.00 4.02
172 173 1.886422 ATTCCCTTCTCCTCTCCACC 58.114 55.000 0.00 0.00 0.00 4.61
173 174 0.252742 TTCCCTTCTCCTCTCCACCC 60.253 60.000 0.00 0.00 0.00 4.61
174 175 1.690985 CCCTTCTCCTCTCCACCCC 60.691 68.421 0.00 0.00 0.00 4.95
175 176 1.690985 CCTTCTCCTCTCCACCCCC 60.691 68.421 0.00 0.00 0.00 5.40
176 177 1.394151 CTTCTCCTCTCCACCCCCT 59.606 63.158 0.00 0.00 0.00 4.79
177 178 0.689412 CTTCTCCTCTCCACCCCCTC 60.689 65.000 0.00 0.00 0.00 4.30
178 179 2.443016 CTCCTCTCCACCCCCTCG 60.443 72.222 0.00 0.00 0.00 4.63
179 180 2.944954 TCCTCTCCACCCCCTCGA 60.945 66.667 0.00 0.00 0.00 4.04
180 181 2.283809 CCTCTCCACCCCCTCGAT 59.716 66.667 0.00 0.00 0.00 3.59
181 182 2.136878 CCTCTCCACCCCCTCGATG 61.137 68.421 0.00 0.00 0.00 3.84
182 183 2.764128 TCTCCACCCCCTCGATGC 60.764 66.667 0.00 0.00 0.00 3.91
183 184 4.227134 CTCCACCCCCTCGATGCG 62.227 72.222 0.00 0.00 0.00 4.73
185 186 4.530857 CCACCCCCTCGATGCGTC 62.531 72.222 0.00 0.00 0.00 5.19
186 187 4.530857 CACCCCCTCGATGCGTCC 62.531 72.222 0.00 0.00 0.00 4.79
187 188 4.779733 ACCCCCTCGATGCGTCCT 62.780 66.667 0.00 0.00 0.00 3.85
188 189 3.470888 CCCCCTCGATGCGTCCTT 61.471 66.667 0.00 0.00 0.00 3.36
189 190 2.131709 CCCCCTCGATGCGTCCTTA 61.132 63.158 0.00 0.00 0.00 2.69
190 191 1.472662 CCCCCTCGATGCGTCCTTAT 61.473 60.000 0.00 0.00 0.00 1.73
191 192 0.319900 CCCCTCGATGCGTCCTTATG 60.320 60.000 0.00 0.00 0.00 1.90
192 193 0.673985 CCCTCGATGCGTCCTTATGA 59.326 55.000 0.00 0.00 0.00 2.15
193 194 1.336332 CCCTCGATGCGTCCTTATGAG 60.336 57.143 0.00 0.71 0.00 2.90
194 195 1.413382 CTCGATGCGTCCTTATGAGC 58.587 55.000 0.00 0.00 0.00 4.26
393 710 0.255890 ACCCCACCCAATCATCTTCG 59.744 55.000 0.00 0.00 0.00 3.79
413 734 3.787001 CTCCTTCCACGCCCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
849 1170 1.004320 CCGTCCGTCCAATTCACCA 60.004 57.895 0.00 0.00 0.00 4.17
862 1190 7.148154 CGTCCAATTCACCATCTTTTTATACCA 60.148 37.037 0.00 0.00 0.00 3.25
864 1192 7.123547 TCCAATTCACCATCTTTTTATACCACC 59.876 37.037 0.00 0.00 0.00 4.61
865 1193 7.093552 CCAATTCACCATCTTTTTATACCACCA 60.094 37.037 0.00 0.00 0.00 4.17
866 1194 6.827586 TTCACCATCTTTTTATACCACCAC 57.172 37.500 0.00 0.00 0.00 4.16
867 1195 5.258051 TCACCATCTTTTTATACCACCACC 58.742 41.667 0.00 0.00 0.00 4.61
868 1196 4.401202 CACCATCTTTTTATACCACCACCC 59.599 45.833 0.00 0.00 0.00 4.61
869 1197 3.958147 CCATCTTTTTATACCACCACCCC 59.042 47.826 0.00 0.00 0.00 4.95
870 1198 4.325816 CCATCTTTTTATACCACCACCCCT 60.326 45.833 0.00 0.00 0.00 4.79
897 1225 2.281070 CCTCGCCATTCCATCCCG 60.281 66.667 0.00 0.00 0.00 5.14
925 1253 2.747989 ACGCATCTAGAAGACGACAGAA 59.252 45.455 16.38 0.00 0.00 3.02
926 1254 3.181505 ACGCATCTAGAAGACGACAGAAG 60.182 47.826 16.38 0.00 0.00 2.85
927 1255 3.064134 CGCATCTAGAAGACGACAGAAGA 59.936 47.826 0.00 0.00 0.00 2.87
934 1262 2.834574 AGACGACAGAAGATACAGCG 57.165 50.000 0.00 0.00 0.00 5.18
985 1331 0.033504 TCCGTGAGTCCAAGAACTGC 59.966 55.000 0.00 0.00 0.00 4.40
1270 1623 8.466617 TCGCCTTTATCTTCTAGAGTATTTCT 57.533 34.615 0.00 0.00 40.06 2.52
1291 1648 1.139734 CTATGCACGCGACCTCAGT 59.860 57.895 15.93 0.00 0.00 3.41
1292 1649 0.867753 CTATGCACGCGACCTCAGTC 60.868 60.000 15.93 0.00 39.83 3.51
1293 1650 1.591504 TATGCACGCGACCTCAGTCA 61.592 55.000 15.93 0.00 43.73 3.41
1294 1651 2.807045 GCACGCGACCTCAGTCAG 60.807 66.667 15.93 0.00 43.73 3.51
1300 1657 0.723981 GCGACCTCAGTCAGATTTGC 59.276 55.000 0.00 0.00 43.73 3.68
1358 1718 4.590918 TGGTCACCGATTAATTTTGGCTA 58.409 39.130 0.00 0.00 0.00 3.93
1367 1727 6.483307 CCGATTAATTTTGGCTAGTGATGAGA 59.517 38.462 0.00 0.00 0.00 3.27
1369 1729 9.208022 CGATTAATTTTGGCTAGTGATGAGATA 57.792 33.333 0.00 0.00 0.00 1.98
1387 1747 5.537295 TGAGATATTGGGCCATCTGAATTTG 59.463 40.000 12.72 0.00 31.63 2.32
1449 1813 7.876936 AATGCAATTGTAGAGTCTGATTCAT 57.123 32.000 7.40 4.59 33.44 2.57
1456 1820 8.809159 ATTGTAGAGTCTGATTCATATGTTCG 57.191 34.615 1.86 0.00 0.00 3.95
1457 1821 7.568199 TGTAGAGTCTGATTCATATGTTCGA 57.432 36.000 1.86 0.00 0.00 3.71
1463 1827 8.362860 AGTCTGATTCATATGTTCGAAATCAG 57.637 34.615 24.67 24.67 33.19 2.90
1476 1840 7.362662 TGTTCGAAATCAGAATTCTTTTCAGG 58.637 34.615 23.09 13.31 0.00 3.86
1490 1854 3.494336 CAGGTGCGCTACTGCTGC 61.494 66.667 16.63 0.00 38.50 5.25
1491 1855 3.699894 AGGTGCGCTACTGCTGCT 61.700 61.111 9.73 0.00 38.69 4.24
1492 1856 2.184322 GGTGCGCTACTGCTGCTA 59.816 61.111 9.73 0.00 38.69 3.49
1519 1883 9.562408 CTAGATTTCACTACAGAGATACCACTA 57.438 37.037 0.00 0.00 0.00 2.74
1520 1884 8.228035 AGATTTCACTACAGAGATACCACTAC 57.772 38.462 0.00 0.00 0.00 2.73
1521 1885 6.770746 TTTCACTACAGAGATACCACTACC 57.229 41.667 0.00 0.00 0.00 3.18
1522 1886 5.446260 TCACTACAGAGATACCACTACCA 57.554 43.478 0.00 0.00 0.00 3.25
1523 1887 5.191426 TCACTACAGAGATACCACTACCAC 58.809 45.833 0.00 0.00 0.00 4.16
1524 1888 5.045066 TCACTACAGAGATACCACTACCACT 60.045 44.000 0.00 0.00 0.00 4.00
1546 1910 5.598005 ACTCCCTAGTTCTTCATCTGATGAG 59.402 44.000 18.80 13.53 34.61 2.90
1661 2129 9.651913 ACAAAACATTGTTTCTGTGAATAAACT 57.348 25.926 14.80 0.00 36.70 2.66
1666 2134 6.691754 TTGTTTCTGTGAATAAACTGCTCA 57.308 33.333 0.00 0.00 36.70 4.26
1733 2201 7.039722 TCCTGTTTATTCAGTATCCCCTTTT 57.960 36.000 0.00 0.00 34.02 2.27
1869 2337 4.696455 CCAAAGAAAGCAAACACCAGATT 58.304 39.130 0.00 0.00 0.00 2.40
1900 2368 7.232127 AGACTGAACATTTGATGAAATCCTTGT 59.768 33.333 0.00 0.00 44.73 3.16
2023 2491 7.721399 AGCCTAAGGTGATTTATCATAAACAGG 59.279 37.037 0.00 2.04 39.30 4.00
2058 2526 4.141824 GCTCTTCTACTTTCATACTGGCCT 60.142 45.833 3.32 0.00 0.00 5.19
2078 2546 4.445385 GCCTTAACATTTCTTTGTGCACTG 59.555 41.667 19.41 8.44 0.00 3.66
2120 2589 8.795786 TGTCAACAAGAAATATAAACAAGTGC 57.204 30.769 0.00 0.00 0.00 4.40
2121 2590 8.629158 TGTCAACAAGAAATATAAACAAGTGCT 58.371 29.630 0.00 0.00 0.00 4.40
2333 2806 3.648067 TGTTCAAGGACTTCCAGATCACT 59.352 43.478 0.00 0.00 38.89 3.41
2340 2813 4.709397 AGGACTTCCAGATCACTGTAGAAG 59.291 45.833 0.00 0.00 42.50 2.85
2398 2871 9.638239 GAAGCAAAATGTAATTGATCAAGGTAA 57.362 29.630 14.54 0.41 36.10 2.85
2399 2872 9.995003 AAGCAAAATGTAATTGATCAAGGTAAA 57.005 25.926 14.54 4.46 36.10 2.01
2400 2873 9.423061 AGCAAAATGTAATTGATCAAGGTAAAC 57.577 29.630 14.54 7.67 36.10 2.01
2498 2976 3.697542 CTCTGATCAAATTCCATGGTGCA 59.302 43.478 12.58 0.00 0.00 4.57
2525 3003 9.275572 ACCTAGAGTTTACCCTATAAAATGTCA 57.724 33.333 0.00 0.00 0.00 3.58
2543 3021 4.522114 TGTCACTTTTTGAGGTCATCACA 58.478 39.130 0.00 0.00 37.77 3.58
2575 3053 9.979578 AAACACATTCAATTGCTAAGTGATAAA 57.020 25.926 19.65 0.71 35.21 1.40
2579 3057 8.246180 ACATTCAATTGCTAAGTGATAAACAGG 58.754 33.333 0.00 0.00 35.21 4.00
2601 3079 9.561069 ACAGGAAACAAGATTGTATATATGGAC 57.439 33.333 0.00 0.00 41.31 4.02
2647 3137 8.650714 CCTTTTTAGCAGTGCAGAATTTTATTC 58.349 33.333 19.20 0.00 0.00 1.75
2674 3189 4.743493 TGTGCTTCCTTTGTTTCTTGAAC 58.257 39.130 0.00 0.00 38.78 3.18
2689 3204 7.013178 TGTTTCTTGAACTGTGAAGATATGCAA 59.987 33.333 0.00 0.00 39.08 4.08
2902 3417 3.370104 TGTTTTGATTGGTGAACCTGGT 58.630 40.909 0.00 0.00 36.82 4.00
2938 3453 4.689983 GCCATAGCTGAAGGGTAGGAAAAT 60.690 45.833 0.00 0.00 32.27 1.82
2993 3509 7.101652 TGAGTATGCCAGTAGTTTCTCTTAG 57.898 40.000 0.00 0.00 0.00 2.18
2995 3511 7.102847 AGTATGCCAGTAGTTTCTCTTAGTC 57.897 40.000 0.00 0.00 0.00 2.59
3034 3550 2.476199 AGGCTTGCTCAGAGGATAGTT 58.524 47.619 0.00 0.00 0.00 2.24
3086 3602 3.916776 CCGTCGAGTAAGTTTACTTGTCC 59.083 47.826 15.49 9.08 43.64 4.02
3193 3711 1.547372 GACATGGGTGCTTTGATTGCT 59.453 47.619 0.00 0.00 0.00 3.91
3304 3822 3.381045 TGACGAGATTCACACTGTTGTC 58.619 45.455 0.00 0.00 31.66 3.18
3434 4005 9.790344 AAAATTGAGGAATAGATAGACTGATGG 57.210 33.333 0.00 0.00 0.00 3.51
3435 4006 8.503428 AATTGAGGAATAGATAGACTGATGGT 57.497 34.615 0.00 0.00 0.00 3.55
3437 4008 7.531857 TGAGGAATAGATAGACTGATGGTTC 57.468 40.000 0.00 0.00 0.00 3.62
3438 4009 6.207614 TGAGGAATAGATAGACTGATGGTTCG 59.792 42.308 0.00 0.00 0.00 3.95
3442 4013 4.909696 AGATAGACTGATGGTTCGACTG 57.090 45.455 0.00 0.00 0.00 3.51
3443 4014 3.634448 AGATAGACTGATGGTTCGACTGG 59.366 47.826 0.00 0.00 0.00 4.00
3444 4015 0.898320 AGACTGATGGTTCGACTGGG 59.102 55.000 0.00 0.00 0.00 4.45
3445 4016 0.741221 GACTGATGGTTCGACTGGGC 60.741 60.000 0.00 0.00 0.00 5.36
3446 4017 1.450312 CTGATGGTTCGACTGGGCC 60.450 63.158 0.00 0.00 0.00 5.80
3447 4018 2.511600 GATGGTTCGACTGGGCCG 60.512 66.667 0.00 0.00 0.00 6.13
3597 4204 4.382901 GCATTTGATCCAATTTGGGTGCTA 60.383 41.667 15.37 0.00 38.32 3.49
3640 4247 8.735692 TTTATGAATACTGAGATGCATCAACA 57.264 30.769 27.81 23.25 0.00 3.33
3659 4266 4.223320 ACACAATTTTACAGCCGAAGTG 57.777 40.909 0.00 0.00 0.00 3.16
3730 4337 4.078363 ACAACAAAACAGTTCGTCAGTG 57.922 40.909 0.00 0.00 0.00 3.66
3732 4339 4.088648 CAACAAAACAGTTCGTCAGTGAC 58.911 43.478 13.56 13.56 0.00 3.67
3734 4341 3.370978 ACAAAACAGTTCGTCAGTGACTG 59.629 43.478 20.64 14.08 34.85 3.51
3735 4342 3.520290 AAACAGTTCGTCAGTGACTGA 57.480 42.857 20.64 11.93 38.25 3.41
3737 4344 3.520290 ACAGTTCGTCAGTGACTGAAA 57.480 42.857 18.01 6.23 42.46 2.69
3739 4346 3.804325 ACAGTTCGTCAGTGACTGAAATG 59.196 43.478 32.09 32.09 42.46 2.32
3741 4348 3.069586 AGTTCGTCAGTGACTGAAATGGA 59.930 43.478 18.01 9.53 42.46 3.41
3742 4349 3.961480 TCGTCAGTGACTGAAATGGAT 57.039 42.857 18.01 0.00 42.46 3.41
3743 4350 3.588955 TCGTCAGTGACTGAAATGGATG 58.411 45.455 18.01 0.00 42.46 3.51
3744 4351 3.006859 TCGTCAGTGACTGAAATGGATGT 59.993 43.478 18.01 0.00 42.46 3.06
3745 4352 4.219725 TCGTCAGTGACTGAAATGGATGTA 59.780 41.667 18.01 0.00 42.46 2.29
3749 4356 7.492524 GTCAGTGACTGAAATGGATGTATCTA 58.507 38.462 18.01 0.00 42.46 1.98
3750 4357 7.651304 GTCAGTGACTGAAATGGATGTATCTAG 59.349 40.741 18.01 0.00 42.46 2.43
3751 4358 7.561356 TCAGTGACTGAAATGGATGTATCTAGA 59.439 37.037 13.74 0.00 37.57 2.43
3752 4359 7.651304 CAGTGACTGAAATGGATGTATCTAGAC 59.349 40.741 6.79 0.00 32.44 2.59
3753 4360 6.926272 GTGACTGAAATGGATGTATCTAGACC 59.074 42.308 0.00 0.00 0.00 3.85
3754 4361 6.841229 TGACTGAAATGGATGTATCTAGACCT 59.159 38.462 0.00 0.00 0.00 3.85
3756 4363 8.184304 ACTGAAATGGATGTATCTAGACCTAC 57.816 38.462 0.00 0.00 0.00 3.18
3757 4364 7.785028 ACTGAAATGGATGTATCTAGACCTACA 59.215 37.037 8.32 8.32 32.75 2.74
3758 4365 8.727100 TGAAATGGATGTATCTAGACCTACAT 57.273 34.615 15.71 15.71 40.38 2.29
3766 4373 8.727100 ATGTATCTAGACCTACATCCATTTCA 57.273 34.615 11.60 0.00 34.29 2.69
3767 4374 8.183104 TGTATCTAGACCTACATCCATTTCAG 57.817 38.462 0.00 0.00 0.00 3.02
3768 4375 5.537300 TCTAGACCTACATCCATTTCAGC 57.463 43.478 0.00 0.00 0.00 4.26
3769 4376 3.567478 AGACCTACATCCATTTCAGCC 57.433 47.619 0.00 0.00 0.00 4.85
3770 4377 3.118531 AGACCTACATCCATTTCAGCCT 58.881 45.455 0.00 0.00 0.00 4.58
3771 4378 3.135530 AGACCTACATCCATTTCAGCCTC 59.864 47.826 0.00 0.00 0.00 4.70
3772 4379 2.173569 ACCTACATCCATTTCAGCCTCC 59.826 50.000 0.00 0.00 0.00 4.30
3773 4380 2.173356 CCTACATCCATTTCAGCCTCCA 59.827 50.000 0.00 0.00 0.00 3.86
3774 4381 3.181436 CCTACATCCATTTCAGCCTCCAT 60.181 47.826 0.00 0.00 0.00 3.41
3775 4382 4.042062 CCTACATCCATTTCAGCCTCCATA 59.958 45.833 0.00 0.00 0.00 2.74
3776 4383 4.096190 ACATCCATTTCAGCCTCCATAG 57.904 45.455 0.00 0.00 0.00 2.23
3777 4384 3.718434 ACATCCATTTCAGCCTCCATAGA 59.282 43.478 0.00 0.00 0.00 1.98
3778 4385 4.202440 ACATCCATTTCAGCCTCCATAGAG 60.202 45.833 0.00 0.00 40.09 2.43
3813 4421 9.575783 TGTTTGTTGAGTTAGAAAAATAACACC 57.424 29.630 0.00 0.00 37.98 4.16
3833 4442 5.105554 ACACCTAACATGTTTTGAGCACAAA 60.106 36.000 17.78 5.11 43.10 2.83
3886 4495 6.715347 AAGCTGTTCCATCTTGTTAAGTTT 57.285 33.333 0.00 0.00 0.00 2.66
3888 4497 5.241728 AGCTGTTCCATCTTGTTAAGTTTCC 59.758 40.000 0.00 0.00 0.00 3.13
3911 4520 8.421249 TCCTTTCATTATGAACCAAGTGATTT 57.579 30.769 7.19 0.00 35.89 2.17
3960 4569 9.482627 AAGTTCTACTTCTACACATTCTTTCAG 57.517 33.333 0.00 0.00 31.77 3.02
3964 4573 9.516546 TCTACTTCTACACATTCTTTCAGTAGA 57.483 33.333 0.00 0.00 38.44 2.59
3966 4575 8.994429 ACTTCTACACATTCTTTCAGTAGATG 57.006 34.615 0.00 0.00 40.35 2.90
3967 4576 7.547370 ACTTCTACACATTCTTTCAGTAGATGC 59.453 37.037 0.00 0.00 40.35 3.91
3968 4577 7.175347 TCTACACATTCTTTCAGTAGATGCT 57.825 36.000 0.00 0.00 37.01 3.79
3969 4578 8.293699 TCTACACATTCTTTCAGTAGATGCTA 57.706 34.615 0.00 0.00 37.01 3.49
3970 4579 8.409371 TCTACACATTCTTTCAGTAGATGCTAG 58.591 37.037 0.00 0.00 37.01 3.42
3971 4580 6.940739 ACACATTCTTTCAGTAGATGCTAGT 58.059 36.000 0.00 0.00 0.00 2.57
3978 4587 7.120051 TCTTTCAGTAGATGCTAGTAAGTCCT 58.880 38.462 0.00 0.00 0.00 3.85
3988 4597 3.866327 GCTAGTAAGTCCTAACAGCTTGC 59.134 47.826 0.00 0.00 0.00 4.01
3992 4601 2.046314 TCCTAACAGCTTGCGGGC 60.046 61.111 0.00 0.00 0.00 6.13
4018 4627 2.499289 TCTCATCCTGCTGTTCTCCTTC 59.501 50.000 0.00 0.00 0.00 3.46
4020 4629 2.027745 TCATCCTGCTGTTCTCCTTCAC 60.028 50.000 0.00 0.00 0.00 3.18
4021 4630 1.722034 TCCTGCTGTTCTCCTTCACT 58.278 50.000 0.00 0.00 0.00 3.41
4022 4631 1.345741 TCCTGCTGTTCTCCTTCACTG 59.654 52.381 0.00 0.00 0.00 3.66
4023 4632 1.345741 CCTGCTGTTCTCCTTCACTGA 59.654 52.381 0.00 0.00 0.00 3.41
4102 4713 4.517075 TGGACATGCAAAGTCAAATCGTTA 59.483 37.500 20.12 0.00 37.74 3.18
4104 4715 5.046910 ACATGCAAAGTCAAATCGTTAGG 57.953 39.130 0.00 0.00 0.00 2.69
4125 4736 6.966534 AGGTGAATTTGACTGAAAGAACAT 57.033 33.333 0.00 0.00 37.43 2.71
4126 4737 6.742109 AGGTGAATTTGACTGAAAGAACATG 58.258 36.000 0.00 0.00 37.43 3.21
4127 4738 6.547141 AGGTGAATTTGACTGAAAGAACATGA 59.453 34.615 0.00 0.00 37.43 3.07
4128 4739 7.068593 AGGTGAATTTGACTGAAAGAACATGAA 59.931 33.333 0.00 0.00 37.43 2.57
4129 4740 7.706179 GGTGAATTTGACTGAAAGAACATGAAA 59.294 33.333 0.00 0.00 37.43 2.69
4130 4741 9.086336 GTGAATTTGACTGAAAGAACATGAAAA 57.914 29.630 0.00 0.00 37.43 2.29
4131 4742 9.086336 TGAATTTGACTGAAAGAACATGAAAAC 57.914 29.630 0.00 0.00 37.43 2.43
4132 4743 9.086336 GAATTTGACTGAAAGAACATGAAAACA 57.914 29.630 0.00 0.00 37.43 2.83
4135 4746 5.352846 TGACTGAAAGAACATGAAAACACGA 59.647 36.000 0.00 0.00 37.43 4.35
4138 4749 6.747280 ACTGAAAGAACATGAAAACACGAAAG 59.253 34.615 0.00 0.00 37.43 2.62
4139 4750 5.514914 TGAAAGAACATGAAAACACGAAAGC 59.485 36.000 0.00 0.00 0.00 3.51
4151 4762 3.039011 ACACGAAAGCATAGATAGGGGT 58.961 45.455 0.00 0.00 0.00 4.95
4152 4763 3.069729 ACACGAAAGCATAGATAGGGGTC 59.930 47.826 0.00 0.00 0.00 4.46
4163 4774 4.014273 AGATAGGGGTCAAGTCTCCATT 57.986 45.455 0.00 0.00 0.00 3.16
4165 4776 2.887151 AGGGGTCAAGTCTCCATTTG 57.113 50.000 0.00 0.00 0.00 2.32
4171 4782 3.149196 GTCAAGTCTCCATTTGGCTGAA 58.851 45.455 0.00 0.00 34.44 3.02
4179 4790 4.015084 CTCCATTTGGCTGAAGAATGAGT 58.985 43.478 0.00 0.00 33.67 3.41
4189 4800 5.009010 GGCTGAAGAATGAGTGTTCTTTTGA 59.991 40.000 3.69 0.00 45.72 2.69
4195 4806 4.900635 ATGAGTGTTCTTTTGACACCAC 57.099 40.909 3.96 0.00 33.81 4.16
4204 4815 5.247507 TCTTTTGACACCACAGAAACATG 57.752 39.130 0.00 0.00 0.00 3.21
4218 4837 3.591527 AGAAACATGGATAGGGGTCAACA 59.408 43.478 0.00 0.00 0.00 3.33
4220 4839 1.212935 ACATGGATAGGGGTCAACAGC 59.787 52.381 0.00 0.00 0.00 4.40
4221 4840 1.492176 CATGGATAGGGGTCAACAGCT 59.508 52.381 0.00 0.00 0.00 4.24
4228 4847 0.668535 GGGGTCAACAGCTGAAACAC 59.331 55.000 23.35 15.42 35.22 3.32
4240 4859 2.354821 GCTGAAACACCACGAAAACTCT 59.645 45.455 0.00 0.00 0.00 3.24
4243 4862 4.505808 TGAAACACCACGAAAACTCTACA 58.494 39.130 0.00 0.00 0.00 2.74
4245 4864 3.814005 ACACCACGAAAACTCTACAGT 57.186 42.857 0.00 0.00 0.00 3.55
4246 4865 4.924305 ACACCACGAAAACTCTACAGTA 57.076 40.909 0.00 0.00 30.14 2.74
4247 4866 4.868067 ACACCACGAAAACTCTACAGTAG 58.132 43.478 0.47 0.47 30.14 2.57
4251 4870 4.989168 CCACGAAAACTCTACAGTAGCTTT 59.011 41.667 2.26 2.82 30.14 3.51
4253 4872 6.643770 CCACGAAAACTCTACAGTAGCTTTTA 59.356 38.462 2.26 0.00 30.14 1.52
4254 4873 7.331193 CCACGAAAACTCTACAGTAGCTTTTAT 59.669 37.037 2.26 0.14 30.14 1.40
4256 4875 8.305317 ACGAAAACTCTACAGTAGCTTTTATCT 58.695 33.333 2.26 0.00 30.14 1.98
4260 4879 9.593134 AAACTCTACAGTAGCTTTTATCTCATG 57.407 33.333 2.26 0.00 30.14 3.07
4261 4880 7.721402 ACTCTACAGTAGCTTTTATCTCATGG 58.279 38.462 2.26 0.00 0.00 3.66
4262 4881 7.561722 ACTCTACAGTAGCTTTTATCTCATGGA 59.438 37.037 2.26 0.00 0.00 3.41
4263 4882 8.306313 TCTACAGTAGCTTTTATCTCATGGAA 57.694 34.615 2.26 0.00 0.00 3.53
4264 4883 8.928448 TCTACAGTAGCTTTTATCTCATGGAAT 58.072 33.333 2.26 0.00 0.00 3.01
4267 4886 7.225538 ACAGTAGCTTTTATCTCATGGAATTCG 59.774 37.037 0.00 0.00 0.00 3.34
4275 4894 3.018856 TCTCATGGAATTCGCTTGCATT 58.981 40.909 0.00 0.00 42.63 3.56
4277 4896 4.823442 TCTCATGGAATTCGCTTGCATTAT 59.177 37.500 0.00 0.00 42.63 1.28
4334 4954 7.491682 TCACGTCTTAAAACTAACTTACCAGT 58.508 34.615 0.00 0.00 33.11 4.00
4335 4955 7.981225 TCACGTCTTAAAACTAACTTACCAGTT 59.019 33.333 0.00 0.00 45.73 3.16
4340 4960 9.856162 TCTTAAAACTAACTTACCAGTTCCATT 57.144 29.630 0.00 0.00 42.66 3.16
4344 4964 7.662604 AACTAACTTACCAGTTCCATTAACG 57.337 36.000 0.00 0.00 42.66 3.18
4351 4971 7.879160 ACTTACCAGTTCCATTAACGTGAATAA 59.121 33.333 0.00 0.00 43.29 1.40
4358 4978 6.358118 TCCATTAACGTGAATAACATGAGC 57.642 37.500 0.00 0.00 38.72 4.26
4421 5043 7.687941 AAAACTAACTTACCATCACCATCAG 57.312 36.000 0.00 0.00 0.00 2.90
4459 5086 6.099269 AGTTTCCTGTCTACAAACTTGGACTA 59.901 38.462 0.00 0.00 37.09 2.59
4460 5087 5.723672 TCCTGTCTACAAACTTGGACTAG 57.276 43.478 0.00 0.00 0.00 2.57
4462 5089 5.010719 TCCTGTCTACAAACTTGGACTAGTG 59.989 44.000 0.00 0.00 0.00 2.74
4463 5090 5.010719 CCTGTCTACAAACTTGGACTAGTGA 59.989 44.000 0.00 0.00 0.00 3.41
4468 5133 8.121086 GTCTACAAACTTGGACTAGTGAAAAAC 58.879 37.037 0.00 0.00 0.00 2.43
4469 5134 5.875930 ACAAACTTGGACTAGTGAAAAACG 58.124 37.500 0.00 0.00 0.00 3.60
4472 5137 5.729974 ACTTGGACTAGTGAAAAACGAAC 57.270 39.130 0.00 0.00 0.00 3.95
4477 5142 5.295045 TGGACTAGTGAAAAACGAACTTTCC 59.705 40.000 0.00 0.00 32.79 3.13
4481 5146 5.638596 AGTGAAAAACGAACTTTCCTGTT 57.361 34.783 0.00 0.00 32.79 3.16
4482 5147 5.399013 AGTGAAAAACGAACTTTCCTGTTG 58.601 37.500 0.00 0.00 32.79 3.33
4486 5151 4.877323 AAACGAACTTTCCTGTTGACTC 57.123 40.909 0.00 0.00 0.00 3.36
4487 5152 3.821421 ACGAACTTTCCTGTTGACTCT 57.179 42.857 0.00 0.00 0.00 3.24
4499 5164 7.067496 TCCTGTTGACTCTTCAGAAGTTTAT 57.933 36.000 10.09 0.00 31.71 1.40
4504 5169 8.993121 TGTTGACTCTTCAGAAGTTTATGAATC 58.007 33.333 10.09 0.00 37.71 2.52
4508 5173 8.785329 ACTCTTCAGAAGTTTATGAATCTTCC 57.215 34.615 10.09 0.00 37.71 3.46
4509 5174 8.378565 ACTCTTCAGAAGTTTATGAATCTTCCA 58.621 33.333 10.09 0.00 37.71 3.53
4510 5175 9.393512 CTCTTCAGAAGTTTATGAATCTTCCAT 57.606 33.333 10.09 0.00 37.71 3.41
4543 5208 0.883833 CCACTTCTGGTGCAATGGAC 59.116 55.000 0.00 0.00 44.08 4.02
4639 5304 8.366671 AGTACCGCAAATATATTGAGAAAGAC 57.633 34.615 0.00 0.00 0.00 3.01
5008 5674 7.577426 GCCAAGTTGAAAATGGAGATAACATCA 60.577 37.037 3.87 0.00 36.27 3.07
5108 5774 4.152045 CAGACAAAGCATCAAGAGACAGAC 59.848 45.833 0.00 0.00 0.00 3.51
5132 5798 2.421073 TCTCGCATTGAAGCAGAATTGG 59.579 45.455 0.00 0.00 0.00 3.16
5338 6022 6.183360 TGCAACAGATTGACAGGTTAAATGTT 60.183 34.615 0.00 5.59 38.15 2.71
5515 6203 5.558818 ACCCAAGATGATATTGCAGAGATC 58.441 41.667 0.00 0.00 0.00 2.75
5530 6218 1.517257 GATCGTGAGCAGGTGGACG 60.517 63.158 0.00 0.00 0.00 4.79
5533 6221 4.394712 GTGAGCAGGTGGACGGGG 62.395 72.222 0.00 0.00 0.00 5.73
5789 6477 1.271054 ACACTGAGGATGCTGTTGTCC 60.271 52.381 0.00 0.00 34.64 4.02
6099 6792 5.131642 TGAATATGGATGAAGAAGCTGGAGT 59.868 40.000 0.00 0.00 0.00 3.85
6255 6948 7.814107 CAGCATTGTCAAATTACAGGTAACAAT 59.186 33.333 0.00 0.00 41.41 2.71
6310 7006 7.636150 AATGTCAGTGCTAGCAAAAGAATAT 57.364 32.000 21.29 11.92 0.00 1.28
6319 7015 7.174946 GTGCTAGCAAAAGAATATAAGGCCATA 59.825 37.037 21.29 0.00 0.00 2.74
6322 7018 7.472334 AGCAAAAGAATATAAGGCCATATGG 57.528 36.000 18.07 18.07 38.53 2.74
6344 7040 2.076100 TGCGAGCCACTTGTTAATCAG 58.924 47.619 0.00 0.00 0.00 2.90
6348 7044 3.189287 CGAGCCACTTGTTAATCAGCTTT 59.811 43.478 0.00 0.00 0.00 3.51
6357 7053 6.479990 ACTTGTTAATCAGCTTTTCTTTTGCC 59.520 34.615 0.00 0.00 0.00 4.52
6421 7117 1.156736 CCGACCGCAAGATCAAACTT 58.843 50.000 0.00 0.00 43.02 2.66
6442 7138 0.322816 ATGTCTCACCGGCAGCAATT 60.323 50.000 0.00 0.00 0.00 2.32
6619 7315 2.940467 TCCAATGGCCAGCTCCCA 60.940 61.111 13.05 5.16 36.66 4.37
6700 7396 0.759346 AGAAGTTCCTGCCGACAGTT 59.241 50.000 0.00 0.00 42.81 3.16
6828 7533 3.056322 GCCAGAATTCTTTGCTCCAACAT 60.056 43.478 16.10 0.00 0.00 2.71
6836 7541 9.294030 GAATTCTTTGCTCCAACATTACATTAG 57.706 33.333 0.00 0.00 0.00 1.73
6851 7559 2.305927 ACATTAGCAGTAGCACAACCCT 59.694 45.455 0.00 0.00 45.49 4.34
6853 7561 4.164221 ACATTAGCAGTAGCACAACCCTAT 59.836 41.667 0.00 0.00 45.49 2.57
6858 7566 5.566469 AGCAGTAGCACAACCCTATAAAAA 58.434 37.500 0.00 0.00 45.49 1.94
6869 7577 4.341487 ACCCTATAAAAACAGAGGTTGCC 58.659 43.478 0.00 0.00 37.30 4.52
6871 7579 4.770010 CCCTATAAAAACAGAGGTTGCCAA 59.230 41.667 0.00 0.00 37.30 4.52
6872 7580 5.245075 CCCTATAAAAACAGAGGTTGCCAAA 59.755 40.000 0.00 0.00 37.30 3.28
6875 7589 4.391405 AAAAACAGAGGTTGCCAAAGAG 57.609 40.909 0.00 0.00 37.30 2.85
6995 7712 2.884012 TCACTGCATTTCCATGTTCGTT 59.116 40.909 0.00 0.00 32.28 3.85
7027 7744 2.216940 TGCGAGTTTTACAGACGAAACG 59.783 45.455 0.00 0.00 39.94 3.60
7075 7792 7.870509 TGCTGTGAGCTTATGAGAATAATTT 57.129 32.000 0.00 0.00 42.97 1.82
7159 7885 7.434492 TGTGATTTATTAGATCGAGGTTCTCC 58.566 38.462 0.00 0.00 0.00 3.71
7160 7886 6.869388 GTGATTTATTAGATCGAGGTTCTCCC 59.131 42.308 0.00 0.00 0.00 4.30
7208 7934 3.373130 CCATATGAACTGACTGCTGTGTG 59.627 47.826 3.65 0.00 0.00 3.82
7209 7935 2.627515 ATGAACTGACTGCTGTGTGT 57.372 45.000 0.00 0.00 0.00 3.72
7210 7936 2.401583 TGAACTGACTGCTGTGTGTT 57.598 45.000 0.00 5.85 0.00 3.32
7212 7938 3.194861 TGAACTGACTGCTGTGTGTTAC 58.805 45.455 0.00 2.21 0.00 2.50
7213 7939 2.979814 ACTGACTGCTGTGTGTTACA 57.020 45.000 0.00 0.00 37.78 2.41
7214 7940 3.475566 ACTGACTGCTGTGTGTTACAT 57.524 42.857 0.00 0.00 38.92 2.29
7215 7941 3.393800 ACTGACTGCTGTGTGTTACATC 58.606 45.455 0.00 0.00 38.92 3.06
7348 8078 3.804036 TGGGGTGTTCATCGATTATCAC 58.196 45.455 10.89 10.89 0.00 3.06
7351 8081 3.489785 GGGTGTTCATCGATTATCACGAC 59.510 47.826 12.38 6.56 42.37 4.34
7382 8112 3.753797 GCAACCACCAACTTTTCCAAAAA 59.246 39.130 0.00 0.00 0.00 1.94
7415 8145 3.041211 TCTATACAGCCCTGACATTGCT 58.959 45.455 1.69 0.00 35.25 3.91
7477 8207 9.775854 AACACAATCATTGTTAATCAATCCAAA 57.224 25.926 0.00 0.00 43.93 3.28
7540 8270 7.568738 TGATTTATTCAGGGATCCTAGACTTCA 59.431 37.037 12.58 3.10 29.64 3.02
7557 8291 4.082125 ACTTCAGTTTCCATGATTCACCC 58.918 43.478 0.00 0.00 0.00 4.61
7594 8328 6.719365 CCGGATCATTTAGAAGTTGTTGATC 58.281 40.000 0.00 5.13 39.00 2.92
7617 8351 7.079451 TCTACTTCCCTCTCACAAATTTTCT 57.921 36.000 0.00 0.00 0.00 2.52
7629 8363 7.282901 TCTCACAAATTTTCTGACACATCTTGA 59.717 33.333 0.00 0.00 0.00 3.02
7661 8395 9.632807 TTTAAATTCAATCGGTTCTTATTGTGG 57.367 29.630 0.00 0.00 35.16 4.17
7666 8400 6.469410 TCAATCGGTTCTTATTGTGGTAGTT 58.531 36.000 0.00 0.00 35.16 2.24
7683 8418 5.884232 TGGTAGTTCGATAAGCTCTCTAACA 59.116 40.000 12.98 0.00 0.00 2.41
7686 8421 8.566260 GGTAGTTCGATAAGCTCTCTAACATAA 58.434 37.037 12.98 0.88 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.294780 GCTCCTATCCATGCTCCCG 59.705 63.158 0.00 0.00 0.00 5.14
1 2 0.036022 GTGCTCCTATCCATGCTCCC 59.964 60.000 0.00 0.00 0.00 4.30
2 3 0.320247 CGTGCTCCTATCCATGCTCC 60.320 60.000 0.00 0.00 0.00 4.70
3 4 0.948141 GCGTGCTCCTATCCATGCTC 60.948 60.000 0.00 0.00 40.05 4.26
4 5 1.070445 GCGTGCTCCTATCCATGCT 59.930 57.895 0.00 0.00 40.05 3.79
5 6 0.318441 TAGCGTGCTCCTATCCATGC 59.682 55.000 0.00 0.00 42.72 4.06
6 7 1.067283 CCTAGCGTGCTCCTATCCATG 60.067 57.143 0.00 0.00 0.00 3.66
7 8 1.261480 CCTAGCGTGCTCCTATCCAT 58.739 55.000 0.00 0.00 0.00 3.41
8 9 0.827925 CCCTAGCGTGCTCCTATCCA 60.828 60.000 0.00 0.00 0.00 3.41
9 10 0.828343 ACCCTAGCGTGCTCCTATCC 60.828 60.000 0.00 0.00 0.00 2.59
10 11 1.813786 CTACCCTAGCGTGCTCCTATC 59.186 57.143 0.00 0.00 0.00 2.08
11 12 1.548128 CCTACCCTAGCGTGCTCCTAT 60.548 57.143 0.00 0.00 0.00 2.57
12 13 0.178998 CCTACCCTAGCGTGCTCCTA 60.179 60.000 0.00 0.00 0.00 2.94
13 14 1.455959 CCTACCCTAGCGTGCTCCT 60.456 63.158 0.00 0.00 0.00 3.69
14 15 3.130227 CCTACCCTAGCGTGCTCC 58.870 66.667 0.00 0.00 0.00 4.70
15 16 1.749334 ATGCCTACCCTAGCGTGCTC 61.749 60.000 0.00 0.00 0.00 4.26
16 17 0.469331 TATGCCTACCCTAGCGTGCT 60.469 55.000 0.00 0.00 0.00 4.40
17 18 0.319641 GTATGCCTACCCTAGCGTGC 60.320 60.000 0.00 0.00 0.00 5.34
18 19 0.317479 GGTATGCCTACCCTAGCGTG 59.683 60.000 6.92 0.00 41.50 5.34
19 20 2.742746 GGTATGCCTACCCTAGCGT 58.257 57.895 6.92 0.00 41.50 5.07
26 27 1.046204 AACGCTAGGGTATGCCTACC 58.954 55.000 13.46 9.56 45.87 3.18
27 28 1.684983 TCAACGCTAGGGTATGCCTAC 59.315 52.381 13.46 0.00 34.45 3.18
28 29 2.076207 TCAACGCTAGGGTATGCCTA 57.924 50.000 13.46 0.00 34.45 3.93
29 30 1.139058 CTTCAACGCTAGGGTATGCCT 59.861 52.381 13.46 0.00 34.45 4.75
30 31 1.583054 CTTCAACGCTAGGGTATGCC 58.417 55.000 13.46 0.00 0.00 4.40
31 32 1.583054 CCTTCAACGCTAGGGTATGC 58.417 55.000 13.46 0.00 0.00 3.14
32 33 2.240493 CCCTTCAACGCTAGGGTATG 57.760 55.000 13.46 12.97 45.12 2.39
37 38 0.179081 GCTACCCCTTCAACGCTAGG 60.179 60.000 0.00 0.00 0.00 3.02
38 39 0.527817 CGCTACCCCTTCAACGCTAG 60.528 60.000 0.00 0.00 0.00 3.42
39 40 1.514087 CGCTACCCCTTCAACGCTA 59.486 57.895 0.00 0.00 0.00 4.26
40 41 2.264794 CGCTACCCCTTCAACGCT 59.735 61.111 0.00 0.00 0.00 5.07
41 42 2.818274 CCGCTACCCCTTCAACGC 60.818 66.667 0.00 0.00 0.00 4.84
42 43 1.153628 CTCCGCTACCCCTTCAACG 60.154 63.158 0.00 0.00 0.00 4.10
43 44 1.134877 GTACTCCGCTACCCCTTCAAC 60.135 57.143 0.00 0.00 0.00 3.18
44 45 1.188863 GTACTCCGCTACCCCTTCAA 58.811 55.000 0.00 0.00 0.00 2.69
45 46 0.685458 GGTACTCCGCTACCCCTTCA 60.685 60.000 0.00 0.00 31.29 3.02
46 47 0.685458 TGGTACTCCGCTACCCCTTC 60.685 60.000 0.00 0.00 36.09 3.46
47 48 0.252375 TTGGTACTCCGCTACCCCTT 60.252 55.000 0.00 0.00 36.09 3.95
48 49 0.252375 TTTGGTACTCCGCTACCCCT 60.252 55.000 0.00 0.00 36.09 4.79
49 50 0.107993 GTTTGGTACTCCGCTACCCC 60.108 60.000 0.00 0.00 36.09 4.95
50 51 0.107993 GGTTTGGTACTCCGCTACCC 60.108 60.000 0.00 0.00 36.09 3.69
51 52 0.107993 GGGTTTGGTACTCCGCTACC 60.108 60.000 0.00 0.00 37.31 3.18
52 53 0.107993 GGGGTTTGGTACTCCGCTAC 60.108 60.000 0.00 0.00 37.74 3.58
53 54 2.289840 GGGGTTTGGTACTCCGCTA 58.710 57.895 0.00 0.00 37.74 4.26
54 55 3.075186 GGGGTTTGGTACTCCGCT 58.925 61.111 0.00 0.00 37.74 5.52
58 59 3.644861 CCAGTGGGGTTTGGTACTC 57.355 57.895 0.00 0.00 0.00 2.59
76 77 0.106419 TTTGTGTGGGGGTGAGGAAC 60.106 55.000 0.00 0.00 0.00 3.62
77 78 0.631753 TTTTGTGTGGGGGTGAGGAA 59.368 50.000 0.00 0.00 0.00 3.36
78 79 0.631753 TTTTTGTGTGGGGGTGAGGA 59.368 50.000 0.00 0.00 0.00 3.71
79 80 0.750249 GTTTTTGTGTGGGGGTGAGG 59.250 55.000 0.00 0.00 0.00 3.86
80 81 1.408702 CAGTTTTTGTGTGGGGGTGAG 59.591 52.381 0.00 0.00 0.00 3.51
81 82 1.006043 TCAGTTTTTGTGTGGGGGTGA 59.994 47.619 0.00 0.00 0.00 4.02
82 83 1.408702 CTCAGTTTTTGTGTGGGGGTG 59.591 52.381 0.00 0.00 0.00 4.61
83 84 1.687996 CCTCAGTTTTTGTGTGGGGGT 60.688 52.381 0.00 0.00 0.00 4.95
84 85 1.039856 CCTCAGTTTTTGTGTGGGGG 58.960 55.000 0.00 0.00 0.00 5.40
85 86 0.389025 GCCTCAGTTTTTGTGTGGGG 59.611 55.000 0.00 0.00 0.00 4.96
86 87 0.030638 CGCCTCAGTTTTTGTGTGGG 59.969 55.000 0.00 0.00 0.00 4.61
87 88 1.021202 TCGCCTCAGTTTTTGTGTGG 58.979 50.000 0.00 0.00 0.00 4.17
88 89 1.400142 TGTCGCCTCAGTTTTTGTGTG 59.600 47.619 0.00 0.00 0.00 3.82
89 90 1.745232 TGTCGCCTCAGTTTTTGTGT 58.255 45.000 0.00 0.00 0.00 3.72
90 91 2.842208 TTGTCGCCTCAGTTTTTGTG 57.158 45.000 0.00 0.00 0.00 3.33
91 92 3.507786 GTTTTGTCGCCTCAGTTTTTGT 58.492 40.909 0.00 0.00 0.00 2.83
92 93 2.857748 GGTTTTGTCGCCTCAGTTTTTG 59.142 45.455 0.00 0.00 0.00 2.44
93 94 2.494073 TGGTTTTGTCGCCTCAGTTTTT 59.506 40.909 0.00 0.00 0.00 1.94
94 95 2.096248 TGGTTTTGTCGCCTCAGTTTT 58.904 42.857 0.00 0.00 0.00 2.43
95 96 1.404035 GTGGTTTTGTCGCCTCAGTTT 59.596 47.619 0.00 0.00 0.00 2.66
96 97 1.021968 GTGGTTTTGTCGCCTCAGTT 58.978 50.000 0.00 0.00 0.00 3.16
97 98 0.180406 AGTGGTTTTGTCGCCTCAGT 59.820 50.000 0.00 0.00 0.00 3.41
98 99 0.868406 GAGTGGTTTTGTCGCCTCAG 59.132 55.000 0.00 0.00 0.00 3.35
99 100 0.534203 GGAGTGGTTTTGTCGCCTCA 60.534 55.000 0.00 0.00 0.00 3.86
100 101 1.235281 GGGAGTGGTTTTGTCGCCTC 61.235 60.000 0.00 0.00 0.00 4.70
101 102 1.228154 GGGAGTGGTTTTGTCGCCT 60.228 57.895 0.00 0.00 0.00 5.52
102 103 2.265904 GGGGAGTGGTTTTGTCGCC 61.266 63.158 0.00 0.00 36.29 5.54
103 104 1.527380 TGGGGAGTGGTTTTGTCGC 60.527 57.895 0.00 0.00 0.00 5.19
104 105 0.179029 AGTGGGGAGTGGTTTTGTCG 60.179 55.000 0.00 0.00 0.00 4.35
105 106 2.943036 TAGTGGGGAGTGGTTTTGTC 57.057 50.000 0.00 0.00 0.00 3.18
106 107 3.895704 AATAGTGGGGAGTGGTTTTGT 57.104 42.857 0.00 0.00 0.00 2.83
107 108 3.509967 GGAAATAGTGGGGAGTGGTTTTG 59.490 47.826 0.00 0.00 0.00 2.44
108 109 3.401342 AGGAAATAGTGGGGAGTGGTTTT 59.599 43.478 0.00 0.00 0.00 2.43
109 110 2.993863 AGGAAATAGTGGGGAGTGGTTT 59.006 45.455 0.00 0.00 0.00 3.27
110 111 2.644151 AGGAAATAGTGGGGAGTGGTT 58.356 47.619 0.00 0.00 0.00 3.67
111 112 2.361085 AGGAAATAGTGGGGAGTGGT 57.639 50.000 0.00 0.00 0.00 4.16
112 113 3.621558 GAAAGGAAATAGTGGGGAGTGG 58.378 50.000 0.00 0.00 0.00 4.00
113 114 3.270877 CGAAAGGAAATAGTGGGGAGTG 58.729 50.000 0.00 0.00 0.00 3.51
114 115 2.355818 GCGAAAGGAAATAGTGGGGAGT 60.356 50.000 0.00 0.00 0.00 3.85
115 116 2.289565 GCGAAAGGAAATAGTGGGGAG 58.710 52.381 0.00 0.00 0.00 4.30
116 117 1.406341 CGCGAAAGGAAATAGTGGGGA 60.406 52.381 0.00 0.00 0.00 4.81
117 118 1.014352 CGCGAAAGGAAATAGTGGGG 58.986 55.000 0.00 0.00 0.00 4.96
118 119 1.396996 CACGCGAAAGGAAATAGTGGG 59.603 52.381 15.93 0.00 0.00 4.61
119 120 2.093783 GTCACGCGAAAGGAAATAGTGG 59.906 50.000 15.93 0.00 0.00 4.00
120 121 2.993899 AGTCACGCGAAAGGAAATAGTG 59.006 45.455 15.93 0.00 0.00 2.74
121 122 3.251571 GAGTCACGCGAAAGGAAATAGT 58.748 45.455 15.93 0.00 0.00 2.12
122 123 2.603560 GGAGTCACGCGAAAGGAAATAG 59.396 50.000 15.93 0.00 0.00 1.73
123 124 2.613691 GGAGTCACGCGAAAGGAAATA 58.386 47.619 15.93 0.00 0.00 1.40
124 125 1.439679 GGAGTCACGCGAAAGGAAAT 58.560 50.000 15.93 0.00 0.00 2.17
125 126 0.942410 CGGAGTCACGCGAAAGGAAA 60.942 55.000 15.93 0.00 0.00 3.13
126 127 1.372499 CGGAGTCACGCGAAAGGAA 60.372 57.895 15.93 0.00 0.00 3.36
127 128 1.798234 TTCGGAGTCACGCGAAAGGA 61.798 55.000 15.93 1.13 31.93 3.36
128 129 0.942410 TTTCGGAGTCACGCGAAAGG 60.942 55.000 15.93 0.00 36.79 3.11
129 130 1.059264 GATTTCGGAGTCACGCGAAAG 59.941 52.381 15.93 1.66 40.93 2.62
130 131 1.065358 GATTTCGGAGTCACGCGAAA 58.935 50.000 15.93 14.87 41.40 3.46
131 132 0.242825 AGATTTCGGAGTCACGCGAA 59.757 50.000 15.93 0.00 32.57 4.70
132 133 0.179171 GAGATTTCGGAGTCACGCGA 60.179 55.000 15.93 0.00 0.00 5.87
133 134 0.456142 TGAGATTTCGGAGTCACGCG 60.456 55.000 3.53 3.53 0.00 6.01
134 135 1.710013 TTGAGATTTCGGAGTCACGC 58.290 50.000 0.00 0.00 0.00 5.34
135 136 3.307242 GGAATTGAGATTTCGGAGTCACG 59.693 47.826 0.00 0.00 0.00 4.35
136 137 3.623510 GGGAATTGAGATTTCGGAGTCAC 59.376 47.826 0.00 0.00 0.00 3.67
137 138 3.519510 AGGGAATTGAGATTTCGGAGTCA 59.480 43.478 0.00 0.00 0.00 3.41
138 139 4.143986 AGGGAATTGAGATTTCGGAGTC 57.856 45.455 0.00 0.00 0.00 3.36
139 140 4.226168 AGAAGGGAATTGAGATTTCGGAGT 59.774 41.667 0.00 0.00 0.00 3.85
140 141 4.775236 AGAAGGGAATTGAGATTTCGGAG 58.225 43.478 0.00 0.00 0.00 4.63
141 142 4.384208 GGAGAAGGGAATTGAGATTTCGGA 60.384 45.833 0.00 0.00 0.00 4.55
142 143 3.879892 GGAGAAGGGAATTGAGATTTCGG 59.120 47.826 0.00 0.00 0.00 4.30
143 144 4.775236 AGGAGAAGGGAATTGAGATTTCG 58.225 43.478 0.00 0.00 0.00 3.46
144 145 6.000246 AGAGGAGAAGGGAATTGAGATTTC 58.000 41.667 0.00 0.00 0.00 2.17
145 146 5.104151 GGAGAGGAGAAGGGAATTGAGATTT 60.104 44.000 0.00 0.00 0.00 2.17
146 147 4.411869 GGAGAGGAGAAGGGAATTGAGATT 59.588 45.833 0.00 0.00 0.00 2.40
147 148 3.973305 GGAGAGGAGAAGGGAATTGAGAT 59.027 47.826 0.00 0.00 0.00 2.75
148 149 3.246130 TGGAGAGGAGAAGGGAATTGAGA 60.246 47.826 0.00 0.00 0.00 3.27
149 150 3.110705 TGGAGAGGAGAAGGGAATTGAG 58.889 50.000 0.00 0.00 0.00 3.02
150 151 2.840651 GTGGAGAGGAGAAGGGAATTGA 59.159 50.000 0.00 0.00 0.00 2.57
151 152 2.092699 GGTGGAGAGGAGAAGGGAATTG 60.093 54.545 0.00 0.00 0.00 2.32
152 153 2.200955 GGTGGAGAGGAGAAGGGAATT 58.799 52.381 0.00 0.00 0.00 2.17
153 154 1.626631 GGGTGGAGAGGAGAAGGGAAT 60.627 57.143 0.00 0.00 0.00 3.01
154 155 0.252742 GGGTGGAGAGGAGAAGGGAA 60.253 60.000 0.00 0.00 0.00 3.97
155 156 1.392534 GGGTGGAGAGGAGAAGGGA 59.607 63.158 0.00 0.00 0.00 4.20
156 157 1.690985 GGGGTGGAGAGGAGAAGGG 60.691 68.421 0.00 0.00 0.00 3.95
157 158 1.690985 GGGGGTGGAGAGGAGAAGG 60.691 68.421 0.00 0.00 0.00 3.46
158 159 0.689412 GAGGGGGTGGAGAGGAGAAG 60.689 65.000 0.00 0.00 0.00 2.85
159 160 1.392534 GAGGGGGTGGAGAGGAGAA 59.607 63.158 0.00 0.00 0.00 2.87
160 161 2.997584 CGAGGGGGTGGAGAGGAGA 61.998 68.421 0.00 0.00 0.00 3.71
161 162 2.305314 ATCGAGGGGGTGGAGAGGAG 62.305 65.000 0.00 0.00 0.00 3.69
162 163 2.325364 ATCGAGGGGGTGGAGAGGA 61.325 63.158 0.00 0.00 0.00 3.71
163 164 2.136878 CATCGAGGGGGTGGAGAGG 61.137 68.421 0.00 0.00 0.00 3.69
164 165 2.801631 GCATCGAGGGGGTGGAGAG 61.802 68.421 0.00 0.00 0.00 3.20
165 166 2.764128 GCATCGAGGGGGTGGAGA 60.764 66.667 0.00 0.00 0.00 3.71
166 167 4.227134 CGCATCGAGGGGGTGGAG 62.227 72.222 6.20 0.00 0.00 3.86
168 169 4.530857 GACGCATCGAGGGGGTGG 62.531 72.222 18.58 0.00 33.80 4.61
169 170 4.530857 GGACGCATCGAGGGGGTG 62.531 72.222 18.58 0.00 33.80 4.61
170 171 2.866523 TAAGGACGCATCGAGGGGGT 62.867 60.000 18.58 13.55 33.80 4.95
171 172 1.472662 ATAAGGACGCATCGAGGGGG 61.473 60.000 18.58 10.40 33.80 5.40
172 173 0.319900 CATAAGGACGCATCGAGGGG 60.320 60.000 12.92 12.92 33.80 4.79
173 174 0.673985 TCATAAGGACGCATCGAGGG 59.326 55.000 0.00 0.00 0.00 4.30
174 175 1.932604 GCTCATAAGGACGCATCGAGG 60.933 57.143 0.00 0.00 0.00 4.63
175 176 1.269257 TGCTCATAAGGACGCATCGAG 60.269 52.381 0.00 0.00 0.00 4.04
176 177 0.744281 TGCTCATAAGGACGCATCGA 59.256 50.000 0.00 0.00 0.00 3.59
177 178 1.570813 TTGCTCATAAGGACGCATCG 58.429 50.000 0.00 0.00 32.36 3.84
178 179 3.198068 TCTTTGCTCATAAGGACGCATC 58.802 45.455 0.00 0.00 32.36 3.91
179 180 3.118629 TCTCTTTGCTCATAAGGACGCAT 60.119 43.478 0.00 0.00 32.36 4.73
180 181 2.233676 TCTCTTTGCTCATAAGGACGCA 59.766 45.455 0.00 0.00 0.00 5.24
181 182 2.863137 CTCTCTTTGCTCATAAGGACGC 59.137 50.000 0.00 0.00 0.00 5.19
182 183 4.116747 ACTCTCTTTGCTCATAAGGACG 57.883 45.455 0.00 0.00 0.00 4.79
189 190 9.499479 CCAACATATATTACTCTCTTTGCTCAT 57.501 33.333 0.00 0.00 0.00 2.90
190 191 7.933577 CCCAACATATATTACTCTCTTTGCTCA 59.066 37.037 0.00 0.00 0.00 4.26
191 192 7.389053 CCCCAACATATATTACTCTCTTTGCTC 59.611 40.741 0.00 0.00 0.00 4.26
192 193 7.227156 CCCCAACATATATTACTCTCTTTGCT 58.773 38.462 0.00 0.00 0.00 3.91
193 194 6.431234 CCCCCAACATATATTACTCTCTTTGC 59.569 42.308 0.00 0.00 0.00 3.68
194 195 7.445402 CACCCCCAACATATATTACTCTCTTTG 59.555 40.741 0.00 0.00 0.00 2.77
380 697 1.765314 AGGAGGACGAAGATGATTGGG 59.235 52.381 0.00 0.00 0.00 4.12
381 698 3.462021 GAAGGAGGACGAAGATGATTGG 58.538 50.000 0.00 0.00 0.00 3.16
393 710 3.003763 AGGGCGTGGAAGGAGGAC 61.004 66.667 0.00 0.00 0.00 3.85
413 734 3.901797 GAGGTTCAGGGGTGCACGG 62.902 68.421 11.45 0.20 0.00 4.94
849 1170 4.384868 CGAGGGGTGGTGGTATAAAAAGAT 60.385 45.833 0.00 0.00 0.00 2.40
897 1225 0.318762 CTTCTAGATGCGTAGGGGGC 59.681 60.000 0.00 0.00 0.00 5.80
925 1253 3.119316 GGCTGTATAGATGCGCTGTATCT 60.119 47.826 9.73 11.56 38.46 1.98
926 1254 3.182967 GGCTGTATAGATGCGCTGTATC 58.817 50.000 9.73 3.08 0.00 2.24
927 1255 2.416027 CGGCTGTATAGATGCGCTGTAT 60.416 50.000 9.73 5.47 0.00 2.29
934 1262 1.347817 GCGAGCGGCTGTATAGATGC 61.348 60.000 7.50 0.00 39.11 3.91
1032 1378 1.033574 GGTAGGAGATGTGGAGGTCG 58.966 60.000 0.00 0.00 0.00 4.79
1261 1610 5.284188 GTCGCGTGCATAGATAGAAATACTC 59.716 44.000 5.77 0.00 0.00 2.59
1262 1611 5.154932 GTCGCGTGCATAGATAGAAATACT 58.845 41.667 5.77 0.00 0.00 2.12
1270 1623 1.266989 CTGAGGTCGCGTGCATAGATA 59.733 52.381 5.77 0.00 0.00 1.98
1291 1648 6.728200 CACAAAACTCAAGTAGCAAATCTGA 58.272 36.000 0.00 0.00 0.00 3.27
1292 1649 5.400485 GCACAAAACTCAAGTAGCAAATCTG 59.600 40.000 0.00 0.00 0.00 2.90
1293 1650 5.523369 GCACAAAACTCAAGTAGCAAATCT 58.477 37.500 0.00 0.00 0.00 2.40
1294 1651 4.379793 CGCACAAAACTCAAGTAGCAAATC 59.620 41.667 0.00 0.00 0.00 2.17
1300 1657 3.311322 TGTTCCGCACAAAACTCAAGTAG 59.689 43.478 0.00 0.00 29.87 2.57
1358 1718 3.915073 AGATGGCCCAATATCTCATCACT 59.085 43.478 0.00 0.00 37.33 3.41
1367 1727 4.964262 ACACAAATTCAGATGGCCCAATAT 59.036 37.500 0.00 0.00 0.00 1.28
1369 1729 3.175594 ACACAAATTCAGATGGCCCAAT 58.824 40.909 0.00 0.00 0.00 3.16
1387 1747 3.206150 TCAGACTTTCAGGCTCAAACAC 58.794 45.455 0.00 0.00 24.26 3.32
1456 1820 5.570589 CGCACCTGAAAAGAATTCTGATTTC 59.429 40.000 19.29 19.29 33.48 2.17
1457 1821 5.464168 CGCACCTGAAAAGAATTCTGATTT 58.536 37.500 9.17 6.78 0.00 2.17
1463 1827 2.997485 AGCGCACCTGAAAAGAATTC 57.003 45.000 11.47 0.00 0.00 2.17
1490 1854 9.562408 TGGTATCTCTGTAGTGAAATCTAGTAG 57.438 37.037 0.00 0.00 0.00 2.57
1491 1855 9.339850 GTGGTATCTCTGTAGTGAAATCTAGTA 57.660 37.037 0.00 0.00 0.00 1.82
1492 1856 8.056400 AGTGGTATCTCTGTAGTGAAATCTAGT 58.944 37.037 0.00 0.00 0.00 2.57
1519 1883 3.772025 CAGATGAAGAACTAGGGAGTGGT 59.228 47.826 0.00 0.00 35.52 4.16
1520 1884 4.026744 TCAGATGAAGAACTAGGGAGTGG 58.973 47.826 0.00 0.00 35.52 4.00
1521 1885 5.362143 TCATCAGATGAAGAACTAGGGAGTG 59.638 44.000 10.93 0.00 36.11 3.51
1522 1886 5.523588 TCATCAGATGAAGAACTAGGGAGT 58.476 41.667 10.93 0.00 36.11 3.85
1523 1887 5.832595 TCTCATCAGATGAAGAACTAGGGAG 59.167 44.000 14.25 0.00 39.11 4.30
1524 1888 5.770919 TCTCATCAGATGAAGAACTAGGGA 58.229 41.667 14.25 2.30 39.11 4.20
1546 1910 7.719483 TCATCATCAAGGCAATTTTAAGGATC 58.281 34.615 0.00 0.00 0.00 3.36
1666 2134 8.893219 TTCTATACGATGAAAATCAAGCTCAT 57.107 30.769 0.00 0.00 32.49 2.90
1751 2219 9.229784 CAAAGAAGTGATAATGCATTACATGAC 57.770 33.333 21.10 11.86 39.60 3.06
1759 2227 4.441079 GCAGCCAAAGAAGTGATAATGCAT 60.441 41.667 0.00 0.00 0.00 3.96
1761 2229 3.442100 GCAGCCAAAGAAGTGATAATGC 58.558 45.455 0.00 0.00 0.00 3.56
1770 2238 3.084039 TGTAATCTGGCAGCCAAAGAAG 58.916 45.455 17.03 3.07 30.80 2.85
1869 2337 4.971939 TCATCAAATGTTCAGTCTCCACA 58.028 39.130 0.00 0.00 0.00 4.17
1900 2368 0.114954 AGCCCATTCCTTTGCTCCAA 59.885 50.000 0.00 0.00 0.00 3.53
1953 2421 1.135859 GCATCGAGAAGCCTTGTGTTG 60.136 52.381 0.00 0.00 0.00 3.33
2023 2491 6.874288 AAGTAGAAGAGCCAATTGATATGC 57.126 37.500 7.12 1.25 0.00 3.14
2035 2503 4.123506 GGCCAGTATGAAAGTAGAAGAGC 58.876 47.826 0.00 0.00 39.69 4.09
2058 2526 5.003692 TGCAGTGCACAAAGAAATGTTAA 57.996 34.783 21.04 0.00 31.71 2.01
2078 2546 8.909708 TTGTTGACAATAAAGCAATATACTGC 57.090 30.769 0.00 0.00 42.97 4.40
2119 2588 4.773323 AAAAAGTCTCATTGCAGGTAGC 57.227 40.909 0.00 0.00 45.96 3.58
2146 2619 7.675161 TCTTCACCTAATACCTGAATCATCA 57.325 36.000 0.00 0.00 0.00 3.07
2333 2806 3.820557 AGCTGTTTTCAAGGCTTCTACA 58.179 40.909 0.00 0.00 28.91 2.74
2340 2813 5.105063 GGATTCAATAGCTGTTTTCAAGGC 58.895 41.667 0.00 0.00 0.00 4.35
2447 2920 3.261580 CGGTATGAGCATGTGAAGAACA 58.738 45.455 0.00 0.00 44.79 3.18
2525 3003 8.918202 TTAATAGTGTGATGACCTCAAAAAGT 57.082 30.769 0.00 0.00 35.07 2.66
2530 3008 7.220740 TGTGTTTAATAGTGTGATGACCTCAA 58.779 34.615 0.00 0.00 35.07 3.02
2575 3053 9.561069 GTCCATATATACAATCTTGTTTCCTGT 57.439 33.333 0.20 0.00 42.35 4.00
2647 3137 7.147312 TCAAGAAACAAAGGAAGCACATATTG 58.853 34.615 0.00 0.00 0.00 1.90
2698 3213 9.331282 AGATCATTTAATAGTTGTTACTCAGGC 57.669 33.333 0.00 0.00 35.78 4.85
2848 3363 2.493675 TGTTCTCCGAGACAGAATCTGG 59.506 50.000 15.38 0.00 38.00 3.86
2855 3370 6.256757 GGATTATTCTTTGTTCTCCGAGACAG 59.743 42.308 0.00 0.00 0.00 3.51
2902 3417 1.892474 GCTATGGCTGTTTTTCCCACA 59.108 47.619 0.00 0.00 35.22 4.17
2949 3464 9.842775 ATACTCATAACTGATGAAATGATGTGT 57.157 29.630 0.00 0.00 44.14 3.72
3007 3523 5.435686 TCCTCTGAGCAAGCCTAAATAAA 57.564 39.130 0.00 0.00 0.00 1.40
3034 3550 1.003580 GCTTGTGGGACATCTCCTTGA 59.996 52.381 0.00 0.00 44.52 3.02
3193 3711 7.833682 TCAAATTCTCCTCTATATTTTGCACCA 59.166 33.333 0.00 0.00 0.00 4.17
3206 3724 4.347583 CAGCCTATCCTCAAATTCTCCTCT 59.652 45.833 0.00 0.00 0.00 3.69
3304 3822 5.008712 GGAAATAAGGAAATTACCTGCTCCG 59.991 44.000 0.00 0.00 40.49 4.63
3384 3953 5.449107 AGGCTATGCATGCATCTTTAAAG 57.551 39.130 35.35 25.43 37.82 1.85
3434 4005 4.681978 ACAGCGGCCCAGTCGAAC 62.682 66.667 0.00 0.00 29.41 3.95
3435 4006 4.373116 GACAGCGGCCCAGTCGAA 62.373 66.667 0.00 0.00 29.41 3.71
3437 4008 4.457496 ATGACAGCGGCCCAGTCG 62.457 66.667 0.00 0.00 35.09 4.18
3438 4009 2.512515 GATGACAGCGGCCCAGTC 60.513 66.667 0.00 3.28 0.00 3.51
3442 4013 0.749454 AAATGAGATGACAGCGGCCC 60.749 55.000 0.00 0.00 0.00 5.80
3443 4014 0.379669 CAAATGAGATGACAGCGGCC 59.620 55.000 0.00 0.00 0.00 6.13
3444 4015 0.379669 CCAAATGAGATGACAGCGGC 59.620 55.000 0.00 0.00 0.00 6.53
3445 4016 2.028420 TCCAAATGAGATGACAGCGG 57.972 50.000 0.00 0.00 0.00 5.52
3446 4017 3.464907 AGATCCAAATGAGATGACAGCG 58.535 45.455 0.00 0.00 0.00 5.18
3447 4018 4.449131 TGAGATCCAAATGAGATGACAGC 58.551 43.478 0.00 0.00 0.00 4.40
3518 4125 8.204836 AGTTTATTAGCTACATGGAACTAGTGG 58.795 37.037 0.00 0.00 0.00 4.00
3640 4247 7.859325 ATATACACTTCGGCTGTAAAATTGT 57.141 32.000 0.00 0.00 0.00 2.71
3730 4337 7.296628 AGGTCTAGATACATCCATTTCAGTC 57.703 40.000 0.00 0.00 0.00 3.51
3732 4339 8.183104 TGTAGGTCTAGATACATCCATTTCAG 57.817 38.462 0.00 0.00 0.00 3.02
3741 4348 8.727100 TGAAATGGATGTAGGTCTAGATACAT 57.273 34.615 15.71 15.71 40.77 2.29
3742 4349 7.255977 GCTGAAATGGATGTAGGTCTAGATACA 60.256 40.741 8.32 8.32 34.64 2.29
3743 4350 7.093992 GCTGAAATGGATGTAGGTCTAGATAC 58.906 42.308 0.00 0.00 0.00 2.24
3744 4351 6.211584 GGCTGAAATGGATGTAGGTCTAGATA 59.788 42.308 0.00 0.00 0.00 1.98
3745 4352 5.012561 GGCTGAAATGGATGTAGGTCTAGAT 59.987 44.000 0.00 0.00 0.00 1.98
3749 4356 3.118531 AGGCTGAAATGGATGTAGGTCT 58.881 45.455 0.00 0.00 0.00 3.85
3750 4357 3.471680 GAGGCTGAAATGGATGTAGGTC 58.528 50.000 0.00 0.00 0.00 3.85
3751 4358 2.173569 GGAGGCTGAAATGGATGTAGGT 59.826 50.000 0.00 0.00 0.00 3.08
3752 4359 2.173356 TGGAGGCTGAAATGGATGTAGG 59.827 50.000 0.00 0.00 0.00 3.18
3753 4360 3.565764 TGGAGGCTGAAATGGATGTAG 57.434 47.619 0.00 0.00 0.00 2.74
3754 4361 4.907269 TCTATGGAGGCTGAAATGGATGTA 59.093 41.667 0.00 0.00 0.00 2.29
3756 4363 4.325119 CTCTATGGAGGCTGAAATGGATG 58.675 47.826 0.00 0.00 36.03 3.51
3757 4364 4.637387 CTCTATGGAGGCTGAAATGGAT 57.363 45.455 0.00 0.00 36.03 3.41
3770 4377 6.636454 ACAAACAAATACTCCCTCTATGGA 57.364 37.500 0.00 0.00 38.35 3.41
3771 4378 6.884295 TCAACAAACAAATACTCCCTCTATGG 59.116 38.462 0.00 0.00 0.00 2.74
3772 4379 7.607991 ACTCAACAAACAAATACTCCCTCTATG 59.392 37.037 0.00 0.00 0.00 2.23
3773 4380 7.690256 ACTCAACAAACAAATACTCCCTCTAT 58.310 34.615 0.00 0.00 0.00 1.98
3774 4381 7.074653 ACTCAACAAACAAATACTCCCTCTA 57.925 36.000 0.00 0.00 0.00 2.43
3775 4382 5.941788 ACTCAACAAACAAATACTCCCTCT 58.058 37.500 0.00 0.00 0.00 3.69
3776 4383 6.635030 AACTCAACAAACAAATACTCCCTC 57.365 37.500 0.00 0.00 0.00 4.30
3777 4384 7.514721 TCTAACTCAACAAACAAATACTCCCT 58.485 34.615 0.00 0.00 0.00 4.20
3778 4385 7.739498 TCTAACTCAACAAACAAATACTCCC 57.261 36.000 0.00 0.00 0.00 4.30
3810 4418 4.566545 TGTGCTCAAAACATGTTAGGTG 57.433 40.909 12.39 10.60 0.00 4.00
3811 4419 5.590530 TTTGTGCTCAAAACATGTTAGGT 57.409 34.783 12.39 0.00 40.08 3.08
3886 4495 8.306038 CAAATCACTTGGTTCATAATGAAAGGA 58.694 33.333 0.00 0.00 38.22 3.36
3941 4550 7.547370 GCATCTACTGAAAGAATGTGTAGAAGT 59.453 37.037 0.00 0.00 41.56 3.01
3942 4551 7.763528 AGCATCTACTGAAAGAATGTGTAGAAG 59.236 37.037 0.00 0.00 41.56 2.85
3943 4552 7.615403 AGCATCTACTGAAAGAATGTGTAGAA 58.385 34.615 0.00 0.00 41.56 2.10
3944 4553 7.175347 AGCATCTACTGAAAGAATGTGTAGA 57.825 36.000 0.00 0.00 42.15 2.59
3945 4554 8.194104 ACTAGCATCTACTGAAAGAATGTGTAG 58.806 37.037 0.00 0.00 37.43 2.74
3946 4555 8.067751 ACTAGCATCTACTGAAAGAATGTGTA 57.932 34.615 0.00 0.00 37.43 2.90
3947 4556 6.940739 ACTAGCATCTACTGAAAGAATGTGT 58.059 36.000 0.00 0.00 37.43 3.72
3948 4557 8.932945 TTACTAGCATCTACTGAAAGAATGTG 57.067 34.615 0.00 0.00 37.43 3.21
3949 4558 8.754080 ACTTACTAGCATCTACTGAAAGAATGT 58.246 33.333 0.00 0.00 37.43 2.71
3960 4569 6.263617 AGCTGTTAGGACTTACTAGCATCTAC 59.736 42.308 12.06 0.00 34.38 2.59
3964 4573 5.665459 CAAGCTGTTAGGACTTACTAGCAT 58.335 41.667 12.06 2.47 34.38 3.79
3966 4575 3.866327 GCAAGCTGTTAGGACTTACTAGC 59.134 47.826 0.00 0.00 0.00 3.42
3967 4576 4.106197 CGCAAGCTGTTAGGACTTACTAG 58.894 47.826 0.00 0.00 0.00 2.57
3968 4577 3.119245 CCGCAAGCTGTTAGGACTTACTA 60.119 47.826 0.00 0.00 0.00 1.82
3969 4578 2.353803 CCGCAAGCTGTTAGGACTTACT 60.354 50.000 0.00 0.00 0.00 2.24
3970 4579 2.000447 CCGCAAGCTGTTAGGACTTAC 59.000 52.381 0.00 0.00 0.00 2.34
3971 4580 1.066430 CCCGCAAGCTGTTAGGACTTA 60.066 52.381 0.00 0.00 0.00 2.24
3978 4587 0.821711 AACAAGCCCGCAAGCTGTTA 60.822 50.000 0.00 0.00 44.11 2.41
3988 4597 1.372087 GCAGGATGAGAACAAGCCCG 61.372 60.000 0.00 0.00 39.69 6.13
3992 4601 3.672808 AGAACAGCAGGATGAGAACAAG 58.327 45.455 0.00 0.00 39.69 3.16
4018 4627 9.410556 CCAGTATCTTTTACCAAATTTTCAGTG 57.589 33.333 0.00 0.00 0.00 3.66
4049 4659 9.859427 CAGTGAACCAATGTAATTTTGATGTAT 57.141 29.630 0.00 0.00 31.22 2.29
4050 4660 8.855110 ACAGTGAACCAATGTAATTTTGATGTA 58.145 29.630 0.00 0.00 40.90 2.29
4051 4661 7.725251 ACAGTGAACCAATGTAATTTTGATGT 58.275 30.769 0.00 0.00 40.90 3.06
4052 4662 8.592105 AACAGTGAACCAATGTAATTTTGATG 57.408 30.769 0.00 0.00 41.85 3.07
4054 4664 9.689976 CATAACAGTGAACCAATGTAATTTTGA 57.310 29.630 0.00 0.00 41.85 2.69
4055 4665 8.924691 CCATAACAGTGAACCAATGTAATTTTG 58.075 33.333 0.00 0.00 41.85 2.44
4056 4666 8.865090 TCCATAACAGTGAACCAATGTAATTTT 58.135 29.630 0.00 0.00 41.85 1.82
4057 4667 8.303876 GTCCATAACAGTGAACCAATGTAATTT 58.696 33.333 0.00 0.00 41.85 1.82
4058 4668 7.450014 TGTCCATAACAGTGAACCAATGTAATT 59.550 33.333 0.00 0.00 41.85 1.40
4059 4669 6.945435 TGTCCATAACAGTGAACCAATGTAAT 59.055 34.615 0.00 0.00 41.85 1.89
4060 4670 6.299922 TGTCCATAACAGTGAACCAATGTAA 58.700 36.000 0.00 0.00 41.85 2.41
4061 4671 5.870706 TGTCCATAACAGTGAACCAATGTA 58.129 37.500 0.00 0.00 41.85 2.29
4062 4672 4.724399 TGTCCATAACAGTGAACCAATGT 58.276 39.130 0.00 0.00 44.59 2.71
4063 4673 5.643664 CATGTCCATAACAGTGAACCAATG 58.356 41.667 0.00 0.00 42.37 2.82
4064 4674 4.158394 GCATGTCCATAACAGTGAACCAAT 59.842 41.667 0.00 0.00 42.37 3.16
4065 4675 3.505680 GCATGTCCATAACAGTGAACCAA 59.494 43.478 0.00 0.00 42.37 3.67
4066 4676 3.081061 GCATGTCCATAACAGTGAACCA 58.919 45.455 0.00 0.00 42.37 3.67
4067 4677 3.081061 TGCATGTCCATAACAGTGAACC 58.919 45.455 0.00 0.00 42.37 3.62
4068 4678 4.764679 TTGCATGTCCATAACAGTGAAC 57.235 40.909 0.00 0.00 42.37 3.18
4102 4713 6.547141 TCATGTTCTTTCAGTCAAATTCACCT 59.453 34.615 0.00 0.00 0.00 4.00
4104 4715 8.633075 TTTCATGTTCTTTCAGTCAAATTCAC 57.367 30.769 0.00 0.00 0.00 3.18
4125 4736 5.584649 CCCTATCTATGCTTTCGTGTTTTCA 59.415 40.000 0.00 0.00 0.00 2.69
4126 4737 5.007724 CCCCTATCTATGCTTTCGTGTTTTC 59.992 44.000 0.00 0.00 0.00 2.29
4127 4738 4.881850 CCCCTATCTATGCTTTCGTGTTTT 59.118 41.667 0.00 0.00 0.00 2.43
4128 4739 4.080526 ACCCCTATCTATGCTTTCGTGTTT 60.081 41.667 0.00 0.00 0.00 2.83
4129 4740 3.454812 ACCCCTATCTATGCTTTCGTGTT 59.545 43.478 0.00 0.00 0.00 3.32
4130 4741 3.039011 ACCCCTATCTATGCTTTCGTGT 58.961 45.455 0.00 0.00 0.00 4.49
4131 4742 3.069586 TGACCCCTATCTATGCTTTCGTG 59.930 47.826 0.00 0.00 0.00 4.35
4132 4743 3.305720 TGACCCCTATCTATGCTTTCGT 58.694 45.455 0.00 0.00 0.00 3.85
4135 4746 4.971924 AGACTTGACCCCTATCTATGCTTT 59.028 41.667 0.00 0.00 0.00 3.51
4138 4749 3.259625 GGAGACTTGACCCCTATCTATGC 59.740 52.174 0.00 0.00 0.00 3.14
4139 4750 4.483950 TGGAGACTTGACCCCTATCTATG 58.516 47.826 0.00 0.00 0.00 2.23
4151 4762 3.072915 TCTTCAGCCAAATGGAGACTTGA 59.927 43.478 2.98 0.00 37.39 3.02
4152 4763 3.415212 TCTTCAGCCAAATGGAGACTTG 58.585 45.455 2.98 0.00 37.39 3.16
4163 4774 4.090761 AGAACACTCATTCTTCAGCCAA 57.909 40.909 0.00 0.00 35.29 4.52
4165 4776 5.009010 TCAAAAGAACACTCATTCTTCAGCC 59.991 40.000 1.47 0.00 46.02 4.85
4171 4782 5.066505 GTGGTGTCAAAAGAACACTCATTCT 59.933 40.000 6.38 0.00 45.05 2.40
4179 4790 4.520874 TGTTTCTGTGGTGTCAAAAGAACA 59.479 37.500 0.00 0.00 31.55 3.18
4189 4800 3.308402 CCCTATCCATGTTTCTGTGGTGT 60.308 47.826 0.00 0.00 36.84 4.16
4195 4806 3.931907 TGACCCCTATCCATGTTTCTG 57.068 47.619 0.00 0.00 0.00 3.02
4204 4815 1.204146 TCAGCTGTTGACCCCTATCC 58.796 55.000 14.67 0.00 0.00 2.59
4218 4837 2.354821 GAGTTTTCGTGGTGTTTCAGCT 59.645 45.455 0.96 0.00 32.61 4.24
4220 4839 4.569162 TGTAGAGTTTTCGTGGTGTTTCAG 59.431 41.667 0.00 0.00 0.00 3.02
4221 4840 4.505808 TGTAGAGTTTTCGTGGTGTTTCA 58.494 39.130 0.00 0.00 0.00 2.69
4228 4847 4.175787 AGCTACTGTAGAGTTTTCGTGG 57.824 45.455 18.64 0.00 33.21 4.94
4240 4859 9.547753 GAATTCCATGAGATAAAAGCTACTGTA 57.452 33.333 0.00 0.00 0.00 2.74
4243 4862 6.203723 GCGAATTCCATGAGATAAAAGCTACT 59.796 38.462 0.00 0.00 0.00 2.57
4245 4864 6.291377 AGCGAATTCCATGAGATAAAAGCTA 58.709 36.000 0.00 0.00 0.00 3.32
4246 4865 5.128919 AGCGAATTCCATGAGATAAAAGCT 58.871 37.500 0.00 0.00 0.00 3.74
4247 4866 5.429957 AGCGAATTCCATGAGATAAAAGC 57.570 39.130 0.00 0.00 0.00 3.51
4251 4870 4.198530 TGCAAGCGAATTCCATGAGATAA 58.801 39.130 0.00 0.00 0.00 1.75
4253 4872 2.646930 TGCAAGCGAATTCCATGAGAT 58.353 42.857 0.00 0.00 0.00 2.75
4254 4873 2.112380 TGCAAGCGAATTCCATGAGA 57.888 45.000 0.00 0.00 0.00 3.27
4256 4875 6.822667 ATATAATGCAAGCGAATTCCATGA 57.177 33.333 0.00 0.00 0.00 3.07
4260 4879 6.902341 TGAGAATATAATGCAAGCGAATTCC 58.098 36.000 0.00 0.00 0.00 3.01
4261 4880 7.484007 CCATGAGAATATAATGCAAGCGAATTC 59.516 37.037 0.00 0.00 0.00 2.17
4262 4881 7.175467 TCCATGAGAATATAATGCAAGCGAATT 59.825 33.333 0.00 0.00 0.00 2.17
4263 4882 6.656270 TCCATGAGAATATAATGCAAGCGAAT 59.344 34.615 0.00 0.00 0.00 3.34
4264 4883 5.997129 TCCATGAGAATATAATGCAAGCGAA 59.003 36.000 0.00 0.00 0.00 4.70
4267 4886 6.973843 TGTTCCATGAGAATATAATGCAAGC 58.026 36.000 0.00 0.00 36.69 4.01
4275 4894 8.739039 CCAAGTTTGTTGTTCCATGAGAATATA 58.261 33.333 0.00 0.00 36.69 0.86
4277 4896 6.775142 TCCAAGTTTGTTGTTCCATGAGAATA 59.225 34.615 0.00 0.00 36.69 1.75
4334 4954 6.372937 TGCTCATGTTATTCACGTTAATGGAA 59.627 34.615 5.23 0.00 0.00 3.53
4335 4955 5.877564 TGCTCATGTTATTCACGTTAATGGA 59.122 36.000 5.23 0.00 0.00 3.41
4340 4960 6.128391 GGAACTTGCTCATGTTATTCACGTTA 60.128 38.462 0.00 0.00 0.00 3.18
4344 4964 5.182001 ACAGGAACTTGCTCATGTTATTCAC 59.818 40.000 0.00 0.00 37.02 3.18
4351 4971 4.623932 TTAGACAGGAACTTGCTCATGT 57.376 40.909 0.00 0.00 42.69 3.21
4421 5043 9.733219 GTAGACAGGAAACTTAGTCATATACAC 57.267 37.037 0.00 0.00 40.21 2.90
4425 5047 9.654663 GTTTGTAGACAGGAAACTTAGTCATAT 57.345 33.333 0.00 0.00 40.21 1.78
4426 5048 8.867097 AGTTTGTAGACAGGAAACTTAGTCATA 58.133 33.333 0.00 0.00 40.21 2.15
4459 5086 5.182380 TCAACAGGAAAGTTCGTTTTTCACT 59.818 36.000 9.82 4.19 36.50 3.41
4460 5087 5.285370 GTCAACAGGAAAGTTCGTTTTTCAC 59.715 40.000 9.82 2.61 36.50 3.18
4462 5089 5.637809 AGTCAACAGGAAAGTTCGTTTTTC 58.362 37.500 0.00 0.00 34.55 2.29
4463 5090 5.414765 AGAGTCAACAGGAAAGTTCGTTTTT 59.585 36.000 0.00 0.00 0.00 1.94
4468 5133 4.119862 TGAAGAGTCAACAGGAAAGTTCG 58.880 43.478 0.00 0.00 0.00 3.95
4469 5134 5.360591 TCTGAAGAGTCAACAGGAAAGTTC 58.639 41.667 13.81 0.00 31.88 3.01
4472 5137 5.363939 ACTTCTGAAGAGTCAACAGGAAAG 58.636 41.667 23.36 12.91 31.88 2.62
4477 5142 7.953158 TCATAAACTTCTGAAGAGTCAACAG 57.047 36.000 23.36 9.38 31.88 3.16
4481 5146 9.429359 GAAGATTCATAAACTTCTGAAGAGTCA 57.571 33.333 23.36 6.36 37.58 3.41
4482 5147 8.878769 GGAAGATTCATAAACTTCTGAAGAGTC 58.121 37.037 23.36 6.89 39.61 3.36
4486 5151 9.393512 AGATGGAAGATTCATAAACTTCTGAAG 57.606 33.333 15.59 15.59 39.61 3.02
4487 5152 9.745018 AAGATGGAAGATTCATAAACTTCTGAA 57.255 29.630 0.00 0.00 39.61 3.02
4499 5164 5.591472 CACCTGCAATAAGATGGAAGATTCA 59.409 40.000 0.00 0.00 0.00 2.57
4504 5169 2.360165 GGCACCTGCAATAAGATGGAAG 59.640 50.000 0.00 0.00 44.36 3.46
4508 5173 2.372264 AGTGGCACCTGCAATAAGATG 58.628 47.619 15.27 0.00 44.36 2.90
4509 5174 2.814805 AGTGGCACCTGCAATAAGAT 57.185 45.000 15.27 0.00 44.36 2.40
4510 5175 2.040278 AGAAGTGGCACCTGCAATAAGA 59.960 45.455 15.27 0.00 44.36 2.10
4543 5208 1.135575 GGTTTCAGAAGATTGCCAGCG 60.136 52.381 0.00 0.00 0.00 5.18
4868 5533 2.157738 GCCCTATTATCAAGCAGGCTG 58.842 52.381 10.94 10.94 36.00 4.85
5108 5774 5.441543 CAATTCTGCTTCAATGCGAGATAG 58.558 41.667 0.00 0.00 35.36 2.08
5132 5798 4.045636 TCTGCCTTTCTTTCAAAAGTGC 57.954 40.909 2.63 3.30 37.31 4.40
5164 5830 2.601666 TCACGCTCCCACTGCTCT 60.602 61.111 0.00 0.00 0.00 4.09
5265 5931 2.033550 GGCAACAACAACCGTGTCAATA 59.966 45.455 0.00 0.00 36.80 1.90
5338 6022 2.364186 TCGGCCTGCTGGATCTCA 60.364 61.111 14.77 0.00 34.57 3.27
5515 6203 4.742201 CCCGTCCACCTGCTCACG 62.742 72.222 0.00 0.00 0.00 4.35
5530 6218 0.039180 ACTTGGAAACCGGAATCCCC 59.961 55.000 22.00 10.76 34.68 4.81
5533 6221 4.022676 TGCTTTAACTTGGAAACCGGAATC 60.023 41.667 9.46 5.44 0.00 2.52
5743 6431 3.903714 ACATAAAAGAAGCAAGGGCCTTT 59.096 39.130 18.16 1.33 42.56 3.11
5746 6434 3.258123 TGAACATAAAAGAAGCAAGGGCC 59.742 43.478 0.00 0.00 42.56 5.80
5752 6440 6.238731 CCTCAGTGTTGAACATAAAAGAAGCA 60.239 38.462 0.00 0.00 31.69 3.91
5789 6477 2.492019 TACTCGCTCATGTCAATCCG 57.508 50.000 0.00 0.00 0.00 4.18
5860 6553 0.464452 GACCACCCTCTTCATACCCG 59.536 60.000 0.00 0.00 0.00 5.28
6093 6786 0.460987 GGCCGAATCAGTCACTCCAG 60.461 60.000 0.00 0.00 0.00 3.86
6099 6792 0.738975 CTCGTAGGCCGAATCAGTCA 59.261 55.000 0.00 0.00 46.75 3.41
6272 6968 6.538021 AGCACTGACATTTTAAATTGCAAACA 59.462 30.769 1.71 5.38 0.00 2.83
6283 6979 6.875948 TCTTTTGCTAGCACTGACATTTTA 57.124 33.333 19.17 0.00 0.00 1.52
6290 6986 6.260936 GCCTTATATTCTTTTGCTAGCACTGA 59.739 38.462 19.17 12.84 0.00 3.41
6292 6988 5.532779 GGCCTTATATTCTTTTGCTAGCACT 59.467 40.000 19.17 0.73 0.00 4.40
6310 7006 1.813862 GCTCGCAACCATATGGCCTTA 60.814 52.381 22.18 1.49 39.32 2.69
6319 7015 0.823356 AACAAGTGGCTCGCAACCAT 60.823 50.000 0.00 0.00 39.95 3.55
6322 7018 2.225491 TGATTAACAAGTGGCTCGCAAC 59.775 45.455 0.00 0.00 0.00 4.17
6344 7040 1.869132 CAGGCAAGGCAAAAGAAAAGC 59.131 47.619 0.00 0.00 0.00 3.51
6348 7044 2.499289 TCAAACAGGCAAGGCAAAAGAA 59.501 40.909 0.00 0.00 0.00 2.52
6357 7053 4.984161 CCAACTGTATTTCAAACAGGCAAG 59.016 41.667 8.01 0.00 46.97 4.01
6421 7117 2.110757 TTGCTGCCGGTGAGACATCA 62.111 55.000 1.90 0.00 0.00 3.07
6424 7120 1.073025 AATTGCTGCCGGTGAGACA 59.927 52.632 1.90 0.00 0.00 3.41
6442 7138 0.401738 CAAGGCTTCCCAGGAACTCA 59.598 55.000 0.00 0.00 34.60 3.41
6598 7294 3.628646 GAGCTGGCCATTGGACGGT 62.629 63.158 18.83 11.56 39.83 4.83
6700 7396 5.163488 CCTCTGCAAAAATATGGAGCATCAA 60.163 40.000 0.00 0.00 38.51 2.57
6756 7458 2.426024 GAGATACACTACCAGTTCGCCA 59.574 50.000 0.00 0.00 0.00 5.69
6828 7533 4.019681 AGGGTTGTGCTACTGCTAATGTAA 60.020 41.667 0.00 0.00 40.48 2.41
6836 7541 5.182380 TGTTTTTATAGGGTTGTGCTACTGC 59.818 40.000 0.00 0.00 40.20 4.40
6851 7559 6.294508 GCTCTTTGGCAACCTCTGTTTTTATA 60.295 38.462 0.00 0.00 30.42 0.98
6853 7561 4.202111 GCTCTTTGGCAACCTCTGTTTTTA 60.202 41.667 0.00 0.00 30.42 1.52
6858 7566 0.538287 GGCTCTTTGGCAACCTCTGT 60.538 55.000 0.00 0.00 41.37 3.41
6869 7577 3.741476 GGCGTGCCAGGCTCTTTG 61.741 66.667 14.15 0.00 35.81 2.77
6884 7598 0.463474 GGACATCTGGAAGCAGAGGC 60.463 60.000 0.00 0.00 36.56 4.70
7006 7723 2.216940 CGTTTCGTCTGTAAAACTCGCA 59.783 45.455 0.00 0.00 34.06 5.10
7008 7725 4.880760 ATCGTTTCGTCTGTAAAACTCG 57.119 40.909 0.00 0.00 34.06 4.18
7027 7744 0.872881 GCCATGCCATGTCGCAAATC 60.873 55.000 3.63 0.00 43.24 2.17
7208 7934 0.618458 TGGCCACCTCAGGATGTAAC 59.382 55.000 0.00 0.00 37.40 2.50
7209 7935 1.004277 GTTGGCCACCTCAGGATGTAA 59.996 52.381 3.88 0.00 37.40 2.41
7210 7936 0.618458 GTTGGCCACCTCAGGATGTA 59.382 55.000 3.88 0.00 37.40 2.29
7212 7938 0.962356 GTGTTGGCCACCTCAGGATG 60.962 60.000 3.88 0.00 38.18 3.51
7213 7939 1.380302 GTGTTGGCCACCTCAGGAT 59.620 57.895 3.88 0.00 38.18 3.24
7214 7940 2.836154 GTGTTGGCCACCTCAGGA 59.164 61.111 3.88 0.00 38.18 3.86
7312 8042 2.574369 CACCCCATTTGTCTACCTACCA 59.426 50.000 0.00 0.00 0.00 3.25
7348 8078 0.240945 GTGGTTGCCCTTTGATGTCG 59.759 55.000 0.00 0.00 0.00 4.35
7351 8081 1.047002 TTGGTGGTTGCCCTTTGATG 58.953 50.000 0.00 0.00 0.00 3.07
7382 8112 4.284746 GGGCTGTATAGAAGGCAATAGAGT 59.715 45.833 10.15 0.00 41.80 3.24
7534 8264 4.156739 GGGTGAATCATGGAAACTGAAGTC 59.843 45.833 0.00 0.00 0.00 3.01
7540 8270 1.715931 TGGGGGTGAATCATGGAAACT 59.284 47.619 0.00 0.00 0.00 2.66
7557 8291 3.697439 ATCCGGCGGAACATGTGGG 62.697 63.158 34.58 0.00 34.34 4.61
7594 8328 6.936900 TCAGAAAATTTGTGAGAGGGAAGTAG 59.063 38.462 1.15 0.00 0.00 2.57
7601 8335 5.756195 TGTGTCAGAAAATTTGTGAGAGG 57.244 39.130 5.77 0.00 33.21 3.69
7604 8338 7.420002 TCAAGATGTGTCAGAAAATTTGTGAG 58.580 34.615 5.77 0.00 33.21 3.51
7637 8371 8.343168 ACCACAATAAGAACCGATTGAATTTA 57.657 30.769 1.82 0.00 36.69 1.40
7646 8380 4.218200 TCGAACTACCACAATAAGAACCGA 59.782 41.667 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.