Multiple sequence alignment - TraesCS5A01G547000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G547000 chr5A 100.000 2321 0 0 1 2321 700797258 700799578 0.000000e+00 4287.0
1 TraesCS5A01G547000 chr5A 100.000 458 0 0 2663 3120 700799920 700800377 0.000000e+00 846.0
2 TraesCS5A01G547000 chrUn 87.153 2125 150 50 232 2319 110763775 110765813 0.000000e+00 2298.0
3 TraesCS5A01G547000 chrUn 83.687 1226 119 40 310 1491 273155246 273156434 0.000000e+00 1081.0
4 TraesCS5A01G547000 chrUn 90.028 702 37 13 1628 2321 273156635 273157311 0.000000e+00 878.0
5 TraesCS5A01G547000 chrUn 94.348 460 21 4 2663 3120 273157370 273157826 0.000000e+00 701.0
6 TraesCS5A01G547000 chrUn 91.932 471 19 10 2664 3120 110765872 110766337 2.620000e-180 641.0
7 TraesCS5A01G547000 chr4B 85.956 1773 123 57 622 2321 660702656 660704375 0.000000e+00 1779.0
8 TraesCS5A01G547000 chr4B 83.687 1226 119 40 310 1491 660496628 660495440 0.000000e+00 1081.0
9 TraesCS5A01G547000 chr4B 90.129 699 36 13 1631 2321 660495236 660494563 0.000000e+00 878.0
10 TraesCS5A01G547000 chr4B 94.348 460 21 4 2663 3120 660494504 660494048 0.000000e+00 701.0
11 TraesCS5A01G547000 chr4B 94.130 460 22 4 2663 3120 660704431 660704887 0.000000e+00 695.0
12 TraesCS5A01G547000 chr4D 79.132 484 86 10 1643 2125 505364220 505363751 1.400000e-83 320.0
13 TraesCS5A01G547000 chr7A 83.495 103 8 4 1480 1582 398924423 398924516 1.540000e-13 87.9
14 TraesCS5A01G547000 chr7A 96.875 32 0 1 354 385 34030425 34030455 6.000000e-03 52.8
15 TraesCS5A01G547000 chr3A 84.211 95 6 4 1489 1583 700747626 700747711 1.990000e-12 84.2
16 TraesCS5A01G547000 chr5D 100.000 34 0 0 1514 1547 340756140 340756107 2.600000e-06 63.9
17 TraesCS5A01G547000 chr2B 90.196 51 1 2 1492 1542 216855370 216855416 2.600000e-06 63.9
18 TraesCS5A01G547000 chr1D 95.000 40 2 0 1514 1553 332935675 332935636 2.600000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G547000 chr5A 700797258 700800377 3119 False 2566.500000 4287 100.000000 1 3120 2 chr5A.!!$F1 3119
1 TraesCS5A01G547000 chrUn 110763775 110766337 2562 False 1469.500000 2298 89.542500 232 3120 2 chrUn.!!$F1 2888
2 TraesCS5A01G547000 chrUn 273155246 273157826 2580 False 886.666667 1081 89.354333 310 3120 3 chrUn.!!$F2 2810
3 TraesCS5A01G547000 chr4B 660702656 660704887 2231 False 1237.000000 1779 90.043000 622 3120 2 chr4B.!!$F1 2498
4 TraesCS5A01G547000 chr4B 660494048 660496628 2580 True 886.666667 1081 89.388000 310 3120 3 chr4B.!!$R1 2810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.030638 CGTTTTGACCCAGCCACTTG 59.969 55.0 0.00 0.0 0.00 3.16 F
1254 1330 0.098905 CGCTCGAGAACTGGAATCGA 59.901 55.0 18.75 0.0 42.71 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 2359 0.536233 TTCTTGCACCAAAGCGCCTA 60.536 50.000 2.29 0.0 37.31 3.93 R
2227 2513 1.402456 GCTGTAGTACACCACTCACCG 60.402 57.143 0.00 0.0 38.80 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.336581 TTCTGCCACGAGTTCACG 57.663 55.556 0.00 0.00 39.31 4.35
26 27 2.724977 ACGAGTTCACGTGTCATCAT 57.275 45.000 16.51 0.00 44.84 2.45
27 28 2.328473 ACGAGTTCACGTGTCATCATG 58.672 47.619 16.51 3.65 44.84 3.07
28 29 2.288213 ACGAGTTCACGTGTCATCATGT 60.288 45.455 16.51 4.28 44.84 3.21
29 30 2.342651 CGAGTTCACGTGTCATCATGTC 59.657 50.000 16.51 1.98 41.25 3.06
30 31 2.668457 GAGTTCACGTGTCATCATGTCC 59.332 50.000 16.51 0.00 41.25 4.02
31 32 1.732259 GTTCACGTGTCATCATGTCCC 59.268 52.381 16.51 0.00 41.25 4.46
32 33 0.249120 TCACGTGTCATCATGTCCCC 59.751 55.000 16.51 0.00 41.25 4.81
33 34 0.036483 CACGTGTCATCATGTCCCCA 60.036 55.000 7.58 0.00 41.25 4.96
34 35 0.036388 ACGTGTCATCATGTCCCCAC 60.036 55.000 0.00 0.00 39.28 4.61
35 36 0.744414 CGTGTCATCATGTCCCCACC 60.744 60.000 0.00 0.00 0.00 4.61
36 37 0.327924 GTGTCATCATGTCCCCACCA 59.672 55.000 0.00 0.00 0.00 4.17
37 38 0.327924 TGTCATCATGTCCCCACCAC 59.672 55.000 0.00 0.00 0.00 4.16
38 39 0.394352 GTCATCATGTCCCCACCACC 60.394 60.000 0.00 0.00 0.00 4.61
39 40 0.844221 TCATCATGTCCCCACCACCA 60.844 55.000 0.00 0.00 0.00 4.17
40 41 0.680921 CATCATGTCCCCACCACCAC 60.681 60.000 0.00 0.00 0.00 4.16
41 42 2.196997 ATCATGTCCCCACCACCACG 62.197 60.000 0.00 0.00 0.00 4.94
42 43 2.528127 ATGTCCCCACCACCACGA 60.528 61.111 0.00 0.00 0.00 4.35
43 44 2.592993 ATGTCCCCACCACCACGAG 61.593 63.158 0.00 0.00 0.00 4.18
44 45 2.920912 GTCCCCACCACCACGAGA 60.921 66.667 0.00 0.00 0.00 4.04
45 46 2.121832 TCCCCACCACCACGAGAT 59.878 61.111 0.00 0.00 0.00 2.75
46 47 1.537889 TCCCCACCACCACGAGATT 60.538 57.895 0.00 0.00 0.00 2.40
47 48 0.252330 TCCCCACCACCACGAGATTA 60.252 55.000 0.00 0.00 0.00 1.75
48 49 0.837272 CCCCACCACCACGAGATTAT 59.163 55.000 0.00 0.00 0.00 1.28
49 50 2.043992 CCCCACCACCACGAGATTATA 58.956 52.381 0.00 0.00 0.00 0.98
50 51 2.224209 CCCCACCACCACGAGATTATAC 60.224 54.545 0.00 0.00 0.00 1.47
51 52 2.432874 CCCACCACCACGAGATTATACA 59.567 50.000 0.00 0.00 0.00 2.29
52 53 3.118555 CCCACCACCACGAGATTATACAA 60.119 47.826 0.00 0.00 0.00 2.41
53 54 4.444306 CCCACCACCACGAGATTATACAAT 60.444 45.833 0.00 0.00 0.00 2.71
54 55 5.221561 CCCACCACCACGAGATTATACAATA 60.222 44.000 0.00 0.00 0.00 1.90
55 56 6.464222 CCACCACCACGAGATTATACAATAT 58.536 40.000 0.00 0.00 0.00 1.28
56 57 6.368791 CCACCACCACGAGATTATACAATATG 59.631 42.308 0.00 0.00 0.00 1.78
57 58 7.151976 CACCACCACGAGATTATACAATATGA 58.848 38.462 0.00 0.00 0.00 2.15
58 59 7.655732 CACCACCACGAGATTATACAATATGAA 59.344 37.037 0.00 0.00 0.00 2.57
59 60 8.208224 ACCACCACGAGATTATACAATATGAAA 58.792 33.333 0.00 0.00 0.00 2.69
60 61 9.051679 CCACCACGAGATTATACAATATGAAAA 57.948 33.333 0.00 0.00 0.00 2.29
74 75 7.488322 ACAATATGAAAATTGGAATGGTACCG 58.512 34.615 7.57 0.00 40.48 4.02
75 76 7.123547 ACAATATGAAAATTGGAATGGTACCGT 59.876 33.333 7.57 3.49 40.48 4.83
76 77 4.775058 TGAAAATTGGAATGGTACCGTG 57.225 40.909 7.57 0.00 0.00 4.94
77 78 3.057174 TGAAAATTGGAATGGTACCGTGC 60.057 43.478 7.57 5.24 0.00 5.34
78 79 1.470051 AATTGGAATGGTACCGTGCC 58.530 50.000 23.22 23.22 0.00 5.01
79 80 0.329931 ATTGGAATGGTACCGTGCCA 59.670 50.000 28.01 28.01 38.83 4.92
81 82 1.205055 TGGAATGGTACCGTGCCATA 58.795 50.000 28.01 8.41 45.21 2.74
82 83 1.771854 TGGAATGGTACCGTGCCATAT 59.228 47.619 28.01 11.21 45.21 1.78
83 84 2.151202 GGAATGGTACCGTGCCATATG 58.849 52.381 24.79 0.00 45.21 1.78
84 85 1.535462 GAATGGTACCGTGCCATATGC 59.465 52.381 20.13 10.10 45.21 3.14
85 86 0.602638 ATGGTACCGTGCCATATGCG 60.603 55.000 18.63 0.00 44.23 4.73
91 92 2.689083 CGTGCCATATGCGGAAAGA 58.311 52.632 0.00 0.00 45.60 2.52
92 93 1.229428 CGTGCCATATGCGGAAAGAT 58.771 50.000 0.00 0.00 45.60 2.40
93 94 1.195448 CGTGCCATATGCGGAAAGATC 59.805 52.381 0.00 0.00 45.60 2.75
94 95 2.498167 GTGCCATATGCGGAAAGATCT 58.502 47.619 0.00 0.00 45.60 2.75
95 96 2.880890 GTGCCATATGCGGAAAGATCTT 59.119 45.455 0.88 0.88 45.60 2.40
96 97 2.880268 TGCCATATGCGGAAAGATCTTG 59.120 45.455 9.17 0.00 45.60 3.02
97 98 2.227388 GCCATATGCGGAAAGATCTTGG 59.773 50.000 9.17 4.29 0.00 3.61
98 99 2.227388 CCATATGCGGAAAGATCTTGGC 59.773 50.000 9.17 13.28 0.00 4.52
99 100 3.144506 CATATGCGGAAAGATCTTGGCT 58.855 45.455 20.44 12.26 0.00 4.75
100 101 2.134789 ATGCGGAAAGATCTTGGCTT 57.865 45.000 20.44 14.47 0.00 4.35
101 102 1.167851 TGCGGAAAGATCTTGGCTTG 58.832 50.000 20.44 10.42 0.00 4.01
102 103 1.271325 TGCGGAAAGATCTTGGCTTGA 60.271 47.619 20.44 5.04 0.00 3.02
103 104 2.019984 GCGGAAAGATCTTGGCTTGAT 58.980 47.619 9.17 0.00 0.00 2.57
104 105 2.424956 GCGGAAAGATCTTGGCTTGATT 59.575 45.455 9.17 0.00 0.00 2.57
105 106 3.488216 GCGGAAAGATCTTGGCTTGATTC 60.488 47.826 9.17 0.00 0.00 2.52
106 107 3.944015 CGGAAAGATCTTGGCTTGATTCT 59.056 43.478 9.17 0.00 0.00 2.40
107 108 4.201891 CGGAAAGATCTTGGCTTGATTCTG 60.202 45.833 9.17 1.41 0.00 3.02
108 109 4.704057 GGAAAGATCTTGGCTTGATTCTGT 59.296 41.667 9.17 0.00 0.00 3.41
109 110 5.882557 GGAAAGATCTTGGCTTGATTCTGTA 59.117 40.000 9.17 0.00 0.00 2.74
110 111 6.038050 GGAAAGATCTTGGCTTGATTCTGTAG 59.962 42.308 9.17 0.00 0.00 2.74
111 112 5.033589 AGATCTTGGCTTGATTCTGTAGG 57.966 43.478 0.00 0.00 0.00 3.18
112 113 4.472833 AGATCTTGGCTTGATTCTGTAGGT 59.527 41.667 0.00 0.00 0.00 3.08
113 114 4.207891 TCTTGGCTTGATTCTGTAGGTC 57.792 45.455 0.00 0.00 0.00 3.85
114 115 3.840666 TCTTGGCTTGATTCTGTAGGTCT 59.159 43.478 0.00 0.00 0.00 3.85
115 116 4.287067 TCTTGGCTTGATTCTGTAGGTCTT 59.713 41.667 0.00 0.00 0.00 3.01
116 117 5.483937 TCTTGGCTTGATTCTGTAGGTCTTA 59.516 40.000 0.00 0.00 0.00 2.10
117 118 5.344743 TGGCTTGATTCTGTAGGTCTTAG 57.655 43.478 0.00 0.00 0.00 2.18
118 119 4.162320 TGGCTTGATTCTGTAGGTCTTAGG 59.838 45.833 0.00 0.00 0.00 2.69
119 120 4.443598 GGCTTGATTCTGTAGGTCTTAGGG 60.444 50.000 0.00 0.00 0.00 3.53
120 121 4.162509 GCTTGATTCTGTAGGTCTTAGGGT 59.837 45.833 0.00 0.00 0.00 4.34
121 122 5.338463 GCTTGATTCTGTAGGTCTTAGGGTT 60.338 44.000 0.00 0.00 0.00 4.11
122 123 5.934402 TGATTCTGTAGGTCTTAGGGTTC 57.066 43.478 0.00 0.00 0.00 3.62
123 124 5.590818 TGATTCTGTAGGTCTTAGGGTTCT 58.409 41.667 0.00 0.00 0.00 3.01
124 125 6.023603 TGATTCTGTAGGTCTTAGGGTTCTT 58.976 40.000 0.00 0.00 0.00 2.52
125 126 7.186972 TGATTCTGTAGGTCTTAGGGTTCTTA 58.813 38.462 0.00 0.00 0.00 2.10
126 127 7.844779 TGATTCTGTAGGTCTTAGGGTTCTTAT 59.155 37.037 0.00 0.00 0.00 1.73
127 128 8.625467 ATTCTGTAGGTCTTAGGGTTCTTATT 57.375 34.615 0.00 0.00 0.00 1.40
128 129 9.725206 ATTCTGTAGGTCTTAGGGTTCTTATTA 57.275 33.333 0.00 0.00 0.00 0.98
129 130 9.551339 TTCTGTAGGTCTTAGGGTTCTTATTAA 57.449 33.333 0.00 0.00 0.00 1.40
130 131 9.198475 TCTGTAGGTCTTAGGGTTCTTATTAAG 57.802 37.037 0.00 0.00 0.00 1.85
131 132 7.789026 TGTAGGTCTTAGGGTTCTTATTAAGC 58.211 38.462 0.00 0.00 0.00 3.09
132 133 7.622479 TGTAGGTCTTAGGGTTCTTATTAAGCT 59.378 37.037 0.00 0.00 0.00 3.74
133 134 7.512117 AGGTCTTAGGGTTCTTATTAAGCTT 57.488 36.000 3.48 3.48 0.00 3.74
134 135 8.619683 AGGTCTTAGGGTTCTTATTAAGCTTA 57.380 34.615 0.86 0.86 0.00 3.09
135 136 9.054580 AGGTCTTAGGGTTCTTATTAAGCTTAA 57.945 33.333 20.71 20.71 30.69 1.85
136 137 9.848710 GGTCTTAGGGTTCTTATTAAGCTTAAT 57.151 33.333 29.41 29.41 37.19 1.40
141 142 8.226819 AGGGTTCTTATTAAGCTTAATTGAGC 57.773 34.615 31.10 26.80 43.02 4.26
142 143 7.285629 AGGGTTCTTATTAAGCTTAATTGAGCC 59.714 37.037 31.65 31.65 43.74 4.70
143 144 7.426410 GGTTCTTATTAAGCTTAATTGAGCCC 58.574 38.462 30.70 25.62 43.74 5.19
144 145 7.285629 GGTTCTTATTAAGCTTAATTGAGCCCT 59.714 37.037 30.70 16.93 43.74 5.19
145 146 9.338622 GTTCTTATTAAGCTTAATTGAGCCCTA 57.661 33.333 31.10 12.34 43.74 3.53
147 148 9.507329 TCTTATTAAGCTTAATTGAGCCCTATG 57.493 33.333 31.10 15.49 43.74 2.23
148 149 8.635765 TTATTAAGCTTAATTGAGCCCTATGG 57.364 34.615 31.10 0.00 43.74 2.74
149 150 4.796110 AAGCTTAATTGAGCCCTATGGA 57.204 40.909 17.83 0.00 43.74 3.41
150 151 4.363991 AGCTTAATTGAGCCCTATGGAG 57.636 45.455 17.83 0.00 43.74 3.86
151 152 3.718956 AGCTTAATTGAGCCCTATGGAGT 59.281 43.478 17.83 0.00 43.74 3.85
152 153 3.817647 GCTTAATTGAGCCCTATGGAGTG 59.182 47.826 11.02 0.00 36.66 3.51
153 154 4.444876 GCTTAATTGAGCCCTATGGAGTGA 60.445 45.833 11.02 0.00 36.66 3.41
154 155 3.567478 AATTGAGCCCTATGGAGTGAC 57.433 47.619 0.00 0.00 0.00 3.67
155 156 1.951209 TTGAGCCCTATGGAGTGACA 58.049 50.000 0.00 0.00 0.00 3.58
156 157 2.180946 TGAGCCCTATGGAGTGACAT 57.819 50.000 0.00 0.00 34.90 3.06
157 158 3.328535 TGAGCCCTATGGAGTGACATA 57.671 47.619 0.00 0.00 32.39 2.29
158 159 3.234353 TGAGCCCTATGGAGTGACATAG 58.766 50.000 6.30 6.30 46.27 2.23
159 160 1.974236 AGCCCTATGGAGTGACATAGC 59.026 52.381 7.51 0.00 45.67 2.97
160 161 1.974236 GCCCTATGGAGTGACATAGCT 59.026 52.381 7.51 0.00 45.67 3.32
161 162 2.028567 GCCCTATGGAGTGACATAGCTC 60.029 54.545 7.51 0.00 45.67 4.09
162 163 3.234353 CCCTATGGAGTGACATAGCTCA 58.766 50.000 7.51 0.00 45.67 4.26
163 164 3.837146 CCCTATGGAGTGACATAGCTCAT 59.163 47.826 7.51 0.00 45.67 2.90
164 165 5.019470 CCCTATGGAGTGACATAGCTCATA 58.981 45.833 7.51 0.00 45.67 2.15
165 166 5.660417 CCCTATGGAGTGACATAGCTCATAT 59.340 44.000 7.51 0.00 45.67 1.78
166 167 6.406737 CCCTATGGAGTGACATAGCTCATATG 60.407 46.154 7.51 0.00 45.67 1.78
167 168 4.263018 TGGAGTGACATAGCTCATATGC 57.737 45.455 0.00 0.00 44.50 3.14
168 169 3.007290 TGGAGTGACATAGCTCATATGCC 59.993 47.826 0.00 0.00 44.50 4.40
169 170 3.007290 GGAGTGACATAGCTCATATGCCA 59.993 47.826 0.00 0.00 44.50 4.92
170 171 4.503817 GGAGTGACATAGCTCATATGCCAA 60.504 45.833 0.00 0.00 44.50 4.52
171 172 4.384056 AGTGACATAGCTCATATGCCAAC 58.616 43.478 0.00 0.00 44.50 3.77
172 173 3.185188 GTGACATAGCTCATATGCCAACG 59.815 47.826 0.00 0.00 44.50 4.10
173 174 3.069443 TGACATAGCTCATATGCCAACGA 59.931 43.478 0.00 0.00 44.50 3.85
174 175 4.058124 GACATAGCTCATATGCCAACGAA 58.942 43.478 0.00 0.00 44.50 3.85
175 176 4.060900 ACATAGCTCATATGCCAACGAAG 58.939 43.478 0.00 0.00 44.50 3.79
176 177 2.988010 AGCTCATATGCCAACGAAGA 57.012 45.000 0.00 0.00 0.00 2.87
177 178 3.266510 AGCTCATATGCCAACGAAGAA 57.733 42.857 0.00 0.00 0.00 2.52
178 179 3.201290 AGCTCATATGCCAACGAAGAAG 58.799 45.455 0.00 0.00 0.00 2.85
179 180 2.286654 GCTCATATGCCAACGAAGAAGC 60.287 50.000 0.00 0.00 0.00 3.86
180 181 3.201290 CTCATATGCCAACGAAGAAGCT 58.799 45.455 0.00 0.00 0.00 3.74
181 182 4.371786 CTCATATGCCAACGAAGAAGCTA 58.628 43.478 0.00 0.00 0.00 3.32
182 183 4.960938 TCATATGCCAACGAAGAAGCTAT 58.039 39.130 0.00 0.00 0.00 2.97
183 184 4.751600 TCATATGCCAACGAAGAAGCTATG 59.248 41.667 0.00 0.00 0.00 2.23
184 185 1.737838 TGCCAACGAAGAAGCTATGG 58.262 50.000 0.00 0.00 0.00 2.74
185 186 0.378610 GCCAACGAAGAAGCTATGGC 59.621 55.000 0.00 0.00 45.54 4.40
186 187 1.017387 CCAACGAAGAAGCTATGGCC 58.983 55.000 0.00 0.00 39.73 5.36
187 188 1.678728 CCAACGAAGAAGCTATGGCCA 60.679 52.381 8.56 8.56 39.73 5.36
188 189 2.083774 CAACGAAGAAGCTATGGCCAA 58.916 47.619 10.96 0.00 39.73 4.52
189 190 2.029838 ACGAAGAAGCTATGGCCAAG 57.970 50.000 10.96 10.17 39.73 3.61
190 191 1.555075 ACGAAGAAGCTATGGCCAAGA 59.445 47.619 10.96 0.00 39.73 3.02
191 192 2.171448 ACGAAGAAGCTATGGCCAAGAT 59.829 45.455 10.96 4.47 39.73 2.40
192 193 3.209410 CGAAGAAGCTATGGCCAAGATT 58.791 45.455 10.96 13.85 39.73 2.40
193 194 3.003068 CGAAGAAGCTATGGCCAAGATTG 59.997 47.826 10.96 0.00 39.73 2.67
194 195 2.305009 AGAAGCTATGGCCAAGATTGC 58.695 47.619 10.96 6.30 39.73 3.56
195 196 2.026641 GAAGCTATGGCCAAGATTGCA 58.973 47.619 10.96 0.00 39.73 4.08
196 197 1.688772 AGCTATGGCCAAGATTGCAG 58.311 50.000 10.96 0.00 39.73 4.41
197 198 1.064166 AGCTATGGCCAAGATTGCAGT 60.064 47.619 10.96 0.00 39.73 4.40
198 199 2.173356 AGCTATGGCCAAGATTGCAGTA 59.827 45.455 10.96 0.00 39.73 2.74
199 200 2.951642 GCTATGGCCAAGATTGCAGTAA 59.048 45.455 10.96 0.00 0.00 2.24
200 201 3.571401 GCTATGGCCAAGATTGCAGTAAT 59.429 43.478 10.96 0.00 0.00 1.89
201 202 4.558095 GCTATGGCCAAGATTGCAGTAATG 60.558 45.833 10.96 0.00 0.00 1.90
202 203 2.806434 TGGCCAAGATTGCAGTAATGT 58.194 42.857 0.61 0.00 0.00 2.71
203 204 3.961849 TGGCCAAGATTGCAGTAATGTA 58.038 40.909 0.61 0.00 0.00 2.29
204 205 4.339748 TGGCCAAGATTGCAGTAATGTAA 58.660 39.130 0.61 0.00 0.00 2.41
205 206 4.769488 TGGCCAAGATTGCAGTAATGTAAA 59.231 37.500 0.61 0.00 0.00 2.01
206 207 5.102313 GGCCAAGATTGCAGTAATGTAAAC 58.898 41.667 0.00 0.00 0.00 2.01
207 208 5.336372 GGCCAAGATTGCAGTAATGTAAACA 60.336 40.000 0.00 0.00 0.00 2.83
208 209 5.801947 GCCAAGATTGCAGTAATGTAAACAG 59.198 40.000 0.00 0.00 0.00 3.16
209 210 6.349280 GCCAAGATTGCAGTAATGTAAACAGA 60.349 38.462 0.00 0.00 0.00 3.41
210 211 7.629222 GCCAAGATTGCAGTAATGTAAACAGAT 60.629 37.037 0.00 0.00 0.00 2.90
211 212 8.246180 CCAAGATTGCAGTAATGTAAACAGATT 58.754 33.333 0.00 0.00 0.00 2.40
212 213 9.069078 CAAGATTGCAGTAATGTAAACAGATTG 57.931 33.333 0.00 0.00 0.00 2.67
213 214 7.765307 AGATTGCAGTAATGTAAACAGATTGG 58.235 34.615 0.00 0.00 0.00 3.16
214 215 7.611467 AGATTGCAGTAATGTAAACAGATTGGA 59.389 33.333 0.00 0.00 0.00 3.53
215 216 6.741992 TGCAGTAATGTAAACAGATTGGAG 57.258 37.500 0.00 0.00 0.00 3.86
216 217 5.647658 TGCAGTAATGTAAACAGATTGGAGG 59.352 40.000 0.00 0.00 0.00 4.30
217 218 5.880332 GCAGTAATGTAAACAGATTGGAGGA 59.120 40.000 0.00 0.00 0.00 3.71
218 219 6.037610 GCAGTAATGTAAACAGATTGGAGGAG 59.962 42.308 0.00 0.00 0.00 3.69
219 220 6.037610 CAGTAATGTAAACAGATTGGAGGAGC 59.962 42.308 0.00 0.00 0.00 4.70
220 221 4.574674 ATGTAAACAGATTGGAGGAGCA 57.425 40.909 0.00 0.00 0.00 4.26
221 222 4.574674 TGTAAACAGATTGGAGGAGCAT 57.425 40.909 0.00 0.00 0.00 3.79
222 223 4.264253 TGTAAACAGATTGGAGGAGCATG 58.736 43.478 0.00 0.00 0.00 4.06
223 224 3.446442 AAACAGATTGGAGGAGCATGT 57.554 42.857 0.00 0.00 0.00 3.21
224 225 3.446442 AACAGATTGGAGGAGCATGTT 57.554 42.857 0.00 0.00 0.00 2.71
225 226 2.996631 ACAGATTGGAGGAGCATGTTC 58.003 47.619 0.04 0.04 0.00 3.18
226 227 2.295885 CAGATTGGAGGAGCATGTTCC 58.704 52.381 20.22 20.22 37.52 3.62
227 228 1.918262 AGATTGGAGGAGCATGTTCCA 59.082 47.619 27.96 16.46 39.84 3.53
229 230 2.205022 TTGGAGGAGCATGTTCCAAG 57.795 50.000 27.96 0.00 43.94 3.61
230 231 1.067295 TGGAGGAGCATGTTCCAAGT 58.933 50.000 27.96 9.82 38.03 3.16
262 263 6.417503 AATTAGAATCCCTAAACCTTGGGT 57.582 37.500 0.00 0.00 43.74 4.51
263 264 3.739401 AGAATCCCTAAACCTTGGGTG 57.261 47.619 0.00 0.00 43.74 4.61
266 267 1.154430 TCCCTAAACCTTGGGTGCTT 58.846 50.000 0.00 0.00 43.74 3.91
269 270 1.256812 CTAAACCTTGGGTGCTTGGG 58.743 55.000 0.00 0.00 35.34 4.12
270 271 0.178947 TAAACCTTGGGTGCTTGGGG 60.179 55.000 0.00 0.00 35.34 4.96
276 277 1.406860 TTGGGTGCTTGGGGCTTTTC 61.407 55.000 0.00 0.00 42.39 2.29
284 285 2.469826 CTTGGGGCTTTTCGTTTTGAC 58.530 47.619 0.00 0.00 0.00 3.18
287 288 0.747852 GGGCTTTTCGTTTTGACCCA 59.252 50.000 0.00 0.00 35.84 4.51
291 292 1.407258 CTTTTCGTTTTGACCCAGCCA 59.593 47.619 0.00 0.00 0.00 4.75
295 296 0.030638 CGTTTTGACCCAGCCACTTG 59.969 55.000 0.00 0.00 0.00 3.16
326 328 7.381408 TGTCACGAATTTACACAGTAGAAAGAG 59.619 37.037 0.00 0.00 0.00 2.85
328 330 6.145534 CACGAATTTACACAGTAGAAAGAGCA 59.854 38.462 0.00 0.00 0.00 4.26
350 359 1.137282 TCACTGCCACGAGTTTACACA 59.863 47.619 0.00 0.00 0.00 3.72
351 360 2.143122 CACTGCCACGAGTTTACACAT 58.857 47.619 0.00 0.00 0.00 3.21
354 363 4.391830 CACTGCCACGAGTTTACACATTAT 59.608 41.667 0.00 0.00 0.00 1.28
355 364 4.391830 ACTGCCACGAGTTTACACATTATG 59.608 41.667 0.00 0.00 0.00 1.90
356 365 3.126171 TGCCACGAGTTTACACATTATGC 59.874 43.478 0.00 0.00 0.00 3.14
357 366 3.486875 GCCACGAGTTTACACATTATGCC 60.487 47.826 0.00 0.00 0.00 4.40
358 367 3.242284 CCACGAGTTTACACATTATGCCG 60.242 47.826 0.00 0.00 0.00 5.69
359 368 3.369756 CACGAGTTTACACATTATGCCGT 59.630 43.478 0.00 0.00 0.00 5.68
360 369 4.563580 CACGAGTTTACACATTATGCCGTA 59.436 41.667 0.00 0.00 0.00 4.02
361 370 5.233476 CACGAGTTTACACATTATGCCGTAT 59.767 40.000 0.00 0.00 0.00 3.06
362 371 5.233476 ACGAGTTTACACATTATGCCGTATG 59.767 40.000 0.00 0.00 0.00 2.39
385 394 2.675348 GGCGACTTCTTCAATCTCAAGG 59.325 50.000 0.00 0.00 0.00 3.61
388 397 3.929610 CGACTTCTTCAATCTCAAGGTCC 59.070 47.826 0.00 0.00 0.00 4.46
408 417 5.455899 GGTCCATAGGCTCAGAATCTCAAAT 60.456 44.000 0.00 0.00 0.00 2.32
448 457 0.179121 TGCCTGCATACGTTCGTAGG 60.179 55.000 14.23 14.23 37.99 3.18
456 465 3.313526 GCATACGTTCGTAGGGAGAAGTA 59.686 47.826 16.38 0.00 0.00 2.24
482 491 1.643880 CGTACATGTGAGCATCTGCA 58.356 50.000 9.11 0.00 45.16 4.41
486 495 1.556451 ACATGTGAGCATCTGCACCTA 59.444 47.619 0.00 0.00 45.16 3.08
498 507 1.924524 CTGCACCTATACCGTGTTTCG 59.075 52.381 0.00 0.00 39.52 3.46
501 510 2.738314 GCACCTATACCGTGTTTCGTTT 59.262 45.455 0.00 0.00 37.94 3.60
511 520 4.030366 CCGTGTTTCGTTTAAAACTCCAC 58.970 43.478 0.00 0.00 39.39 4.02
514 523 5.446206 CGTGTTTCGTTTAAAACTCCACTGA 60.446 40.000 0.00 0.00 39.39 3.41
515 524 6.492254 GTGTTTCGTTTAAAACTCCACTGAT 58.508 36.000 0.00 0.00 39.39 2.90
516 525 6.970613 GTGTTTCGTTTAAAACTCCACTGATT 59.029 34.615 0.00 0.00 39.39 2.57
527 536 2.604914 CTCCACTGATTGAAACGATCGG 59.395 50.000 20.98 1.23 36.25 4.18
534 543 3.639561 TGATTGAAACGATCGGGGATCTA 59.360 43.478 20.98 8.86 36.96 1.98
538 547 0.674534 AACGATCGGGGATCTACAGC 59.325 55.000 20.98 0.00 36.96 4.40
555 564 3.297620 CCAAGCACCCTGCCACAC 61.298 66.667 0.00 0.00 46.52 3.82
595 604 0.389948 AACAGAGTTCGATGCGGTCC 60.390 55.000 0.00 0.00 0.00 4.46
610 619 2.993008 TCCAGCCTGGAGTCATGC 59.007 61.111 10.05 0.00 42.67 4.06
611 620 1.919816 TCCAGCCTGGAGTCATGCA 60.920 57.895 10.05 0.00 42.67 3.96
612 621 1.451567 CCAGCCTGGAGTCATGCAG 60.452 63.158 4.15 0.00 40.96 4.41
628 637 0.245539 GCAGACAAGCAACATGGCAT 59.754 50.000 0.00 0.00 35.83 4.40
762 791 4.900635 TCTTTGACCTTGAACTTGCTTC 57.099 40.909 0.00 0.00 0.00 3.86
783 815 8.133628 GCTTCTGCACTTTACGCATTACGATA 62.134 42.308 0.00 0.00 41.23 2.92
816 850 7.439157 TCCAAGAGTTTACATGTGATCAAAG 57.561 36.000 9.11 0.00 0.00 2.77
829 863 0.317160 ATCAAAGTGTCGACGAGGCA 59.683 50.000 11.62 0.00 0.00 4.75
832 866 3.575351 AAGTGTCGACGAGGCAGGC 62.575 63.158 11.62 0.00 33.59 4.85
874 914 7.923414 TTCTCTGGCTCTTAGGTTTATTTTC 57.077 36.000 0.00 0.00 0.00 2.29
882 923 7.395206 GGCTCTTAGGTTTATTTTCCACCTTAA 59.605 37.037 0.00 0.00 41.42 1.85
906 947 1.202940 GGGCCAAGGGGATACAGATTC 60.203 57.143 4.39 0.00 35.59 2.52
944 989 1.941975 GTACTACGAGGAGAGAGCACC 59.058 57.143 0.00 0.00 0.00 5.01
990 1040 0.468029 ACCACCCTGAAACAAGGCAG 60.468 55.000 0.00 0.00 35.85 4.85
1020 1078 0.898326 TGCCGCTCTCCAACTCTACA 60.898 55.000 0.00 0.00 0.00 2.74
1101 1177 2.124570 GTGGCGCTGGTGATGGAT 60.125 61.111 7.64 0.00 0.00 3.41
1147 1223 4.314440 GCCTGCCACCGACAGACA 62.314 66.667 0.00 0.00 37.32 3.41
1193 1269 4.803426 GAGGACGGTGCGGCTCTG 62.803 72.222 9.20 9.20 34.07 3.35
1254 1330 0.098905 CGCTCGAGAACTGGAATCGA 59.901 55.000 18.75 0.00 42.71 3.59
1449 1545 4.592942 AGTTCATGAGGTACGGTACTACA 58.407 43.478 17.14 16.22 0.00 2.74
1463 1559 7.493743 ACGGTACTACATATGACTACTTCAG 57.506 40.000 10.38 0.00 37.77 3.02
1547 1643 8.818141 TTTTGACACTGTCATAGACTCTAAAG 57.182 34.615 12.71 0.00 42.40 1.85
1554 1650 7.700234 CACTGTCATAGACTCTAAAGATGTCAC 59.300 40.741 10.27 3.52 33.15 3.67
1555 1651 7.613801 ACTGTCATAGACTCTAAAGATGTCACT 59.386 37.037 10.27 0.00 33.15 3.41
1556 1652 7.766283 TGTCATAGACTCTAAAGATGTCACTG 58.234 38.462 10.27 7.83 33.15 3.66
1557 1653 7.611855 TGTCATAGACTCTAAAGATGTCACTGA 59.388 37.037 10.27 9.23 33.15 3.41
1558 1654 8.128582 GTCATAGACTCTAAAGATGTCACTGAG 58.871 40.741 10.27 0.00 33.56 3.35
1595 1700 6.018180 GCAGAGGTAGTATTAATTTTGGACCG 60.018 42.308 0.00 0.00 0.00 4.79
1611 1716 2.159170 GGACCGATCACAAGGAGAAGAG 60.159 54.545 0.00 0.00 0.00 2.85
1612 1717 2.755655 GACCGATCACAAGGAGAAGAGA 59.244 50.000 0.00 0.00 0.00 3.10
1613 1718 3.370104 ACCGATCACAAGGAGAAGAGAT 58.630 45.455 0.00 0.00 0.00 2.75
1614 1719 3.383185 ACCGATCACAAGGAGAAGAGATC 59.617 47.826 0.00 0.00 0.00 2.75
1693 1972 4.704833 GACCGCTCAAGGCTGCCA 62.705 66.667 22.65 0.00 39.13 4.92
1714 1993 2.049156 TCTGTGCAGAAGACCGCG 60.049 61.111 0.00 0.00 33.91 6.46
1900 2179 2.433838 CTCCAGACCAGCTGTGCG 60.434 66.667 13.81 0.00 43.33 5.34
1903 2182 4.994471 CAGACCAGCTGTGCGGCA 62.994 66.667 13.81 0.00 39.85 5.69
2056 2335 0.698886 AGGCCCAATATCTCCAGGCA 60.699 55.000 0.00 0.00 45.72 4.75
2061 2340 3.152341 CCCAATATCTCCAGGCATTGAC 58.848 50.000 0.00 0.00 31.44 3.18
2080 2359 1.684386 CGGCCTTCCAGAGCAGAGAT 61.684 60.000 0.00 0.00 0.00 2.75
2102 2381 0.576798 GCGCTTTGGTGCAAGAAAAC 59.423 50.000 0.00 0.00 46.98 2.43
2151 2430 2.509336 CACGTGACCCGATGCTCC 60.509 66.667 10.90 0.00 40.70 4.70
2170 2456 5.360429 TGCTCCATCATGCTCTATCTATCTC 59.640 44.000 0.00 0.00 0.00 2.75
2225 2511 3.782656 AATAAAGTGTTCCCCTCACGT 57.217 42.857 0.00 0.00 40.28 4.49
2226 2512 4.895668 AATAAAGTGTTCCCCTCACGTA 57.104 40.909 0.00 0.00 40.28 3.57
2227 2513 2.538512 AAAGTGTTCCCCTCACGTAC 57.461 50.000 0.00 0.00 40.28 3.67
2228 2514 0.316204 AAGTGTTCCCCTCACGTACG 59.684 55.000 15.01 15.01 40.28 3.67
2229 2515 1.080298 GTGTTCCCCTCACGTACGG 60.080 63.158 21.06 8.79 0.00 4.02
2244 2530 2.159653 CGTACGGTGAGTGGTGTACTAC 60.160 54.545 7.57 0.00 40.53 2.73
2980 3277 2.232452 AGGGTCAAGACTCATCGTTCTG 59.768 50.000 2.53 0.00 33.19 3.02
2985 3282 4.508124 GTCAAGACTCATCGTTCTGTGTTT 59.492 41.667 0.00 0.00 0.00 2.83
3058 3364 2.093447 ACTTCAGTTAAGGCTATGCGCT 60.093 45.455 9.73 0.00 39.73 5.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.440060 ACGTGAACTCGTGGCAGAA 59.560 52.632 0.00 0.00 42.56 3.02
1 2 3.125607 ACGTGAACTCGTGGCAGA 58.874 55.556 0.00 0.00 42.56 4.26
7 8 2.288213 ACATGATGACACGTGAACTCGT 60.288 45.455 25.01 11.01 45.10 4.18
8 9 2.328473 ACATGATGACACGTGAACTCG 58.672 47.619 25.01 6.58 0.00 4.18
9 10 2.668457 GGACATGATGACACGTGAACTC 59.332 50.000 25.01 14.84 0.00 3.01
10 11 2.612972 GGGACATGATGACACGTGAACT 60.613 50.000 25.01 5.31 0.00 3.01
11 12 1.732259 GGGACATGATGACACGTGAAC 59.268 52.381 25.01 15.84 0.00 3.18
12 13 1.338674 GGGGACATGATGACACGTGAA 60.339 52.381 25.01 10.55 0.00 3.18
13 14 0.249120 GGGGACATGATGACACGTGA 59.751 55.000 25.01 0.00 0.00 4.35
14 15 0.036483 TGGGGACATGATGACACGTG 60.036 55.000 15.48 15.48 33.40 4.49
15 16 0.036388 GTGGGGACATGATGACACGT 60.036 55.000 0.00 0.00 46.14 4.49
16 17 0.744414 GGTGGGGACATGATGACACG 60.744 60.000 0.00 0.00 46.14 4.49
17 18 0.327924 TGGTGGGGACATGATGACAC 59.672 55.000 0.00 3.29 46.14 3.67
18 19 0.327924 GTGGTGGGGACATGATGACA 59.672 55.000 0.00 0.00 46.14 3.58
19 20 0.394352 GGTGGTGGGGACATGATGAC 60.394 60.000 0.00 0.00 46.14 3.06
20 21 0.844221 TGGTGGTGGGGACATGATGA 60.844 55.000 0.00 0.00 46.14 2.92
21 22 0.680921 GTGGTGGTGGGGACATGATG 60.681 60.000 0.00 0.00 46.14 3.07
22 23 1.691219 GTGGTGGTGGGGACATGAT 59.309 57.895 0.00 0.00 46.14 2.45
23 24 2.889606 CGTGGTGGTGGGGACATGA 61.890 63.158 0.00 0.00 46.14 3.07
24 25 2.359850 CGTGGTGGTGGGGACATG 60.360 66.667 0.00 0.00 46.14 3.21
25 26 2.528127 TCGTGGTGGTGGGGACAT 60.528 61.111 0.00 0.00 46.14 3.06
26 27 3.238497 CTCGTGGTGGTGGGGACA 61.238 66.667 0.00 0.00 38.70 4.02
27 28 1.838073 AATCTCGTGGTGGTGGGGAC 61.838 60.000 0.00 0.00 0.00 4.46
28 29 0.252330 TAATCTCGTGGTGGTGGGGA 60.252 55.000 0.00 0.00 0.00 4.81
29 30 0.837272 ATAATCTCGTGGTGGTGGGG 59.163 55.000 0.00 0.00 0.00 4.96
30 31 2.432874 TGTATAATCTCGTGGTGGTGGG 59.567 50.000 0.00 0.00 0.00 4.61
31 32 3.812156 TGTATAATCTCGTGGTGGTGG 57.188 47.619 0.00 0.00 0.00 4.61
32 33 7.151976 TCATATTGTATAATCTCGTGGTGGTG 58.848 38.462 0.00 0.00 0.00 4.17
33 34 7.297936 TCATATTGTATAATCTCGTGGTGGT 57.702 36.000 0.00 0.00 0.00 4.16
34 35 8.601845 TTTCATATTGTATAATCTCGTGGTGG 57.398 34.615 0.00 0.00 0.00 4.61
48 49 8.625651 CGGTACCATTCCAATTTTCATATTGTA 58.374 33.333 13.54 0.00 34.42 2.41
49 50 7.123547 ACGGTACCATTCCAATTTTCATATTGT 59.876 33.333 13.54 0.00 34.42 2.71
50 51 7.434897 CACGGTACCATTCCAATTTTCATATTG 59.565 37.037 13.54 0.00 35.70 1.90
51 52 7.488322 CACGGTACCATTCCAATTTTCATATT 58.512 34.615 13.54 0.00 0.00 1.28
52 53 6.460953 GCACGGTACCATTCCAATTTTCATAT 60.461 38.462 13.54 0.00 0.00 1.78
53 54 5.163602 GCACGGTACCATTCCAATTTTCATA 60.164 40.000 13.54 0.00 0.00 2.15
54 55 4.381505 GCACGGTACCATTCCAATTTTCAT 60.382 41.667 13.54 0.00 0.00 2.57
55 56 3.057174 GCACGGTACCATTCCAATTTTCA 60.057 43.478 13.54 0.00 0.00 2.69
56 57 3.507786 GCACGGTACCATTCCAATTTTC 58.492 45.455 13.54 0.00 0.00 2.29
57 58 2.232696 GGCACGGTACCATTCCAATTTT 59.767 45.455 13.54 0.00 0.00 1.82
58 59 1.822371 GGCACGGTACCATTCCAATTT 59.178 47.619 13.54 0.00 0.00 1.82
59 60 1.272203 TGGCACGGTACCATTCCAATT 60.272 47.619 13.54 0.00 30.29 2.32
60 61 0.329931 TGGCACGGTACCATTCCAAT 59.670 50.000 13.54 0.00 30.29 3.16
61 62 0.329931 ATGGCACGGTACCATTCCAA 59.670 50.000 13.54 1.13 45.86 3.53
62 63 1.205055 TATGGCACGGTACCATTCCA 58.795 50.000 17.66 14.81 45.86 3.53
63 64 2.151202 CATATGGCACGGTACCATTCC 58.849 52.381 17.66 9.40 45.86 3.01
64 65 1.535462 GCATATGGCACGGTACCATTC 59.465 52.381 17.66 5.02 45.86 2.67
65 66 1.604604 GCATATGGCACGGTACCATT 58.395 50.000 17.66 4.12 45.86 3.16
67 68 1.227409 CGCATATGGCACGGTACCA 60.227 57.895 13.54 1.85 45.17 3.25
68 69 1.959226 CCGCATATGGCACGGTACC 60.959 63.158 0.16 0.16 45.17 3.34
69 70 0.531090 TTCCGCATATGGCACGGTAC 60.531 55.000 16.63 0.00 46.92 3.34
70 71 0.178301 TTTCCGCATATGGCACGGTA 59.822 50.000 16.63 7.56 46.92 4.02
71 72 1.078072 TTTCCGCATATGGCACGGT 60.078 52.632 16.63 0.00 46.92 4.83
73 74 1.195448 GATCTTTCCGCATATGGCACG 59.805 52.381 4.56 0.00 45.17 5.34
74 75 2.498167 AGATCTTTCCGCATATGGCAC 58.502 47.619 4.56 0.00 45.17 5.01
75 76 2.880268 CAAGATCTTTCCGCATATGGCA 59.120 45.455 4.86 0.00 45.17 4.92
76 77 2.227388 CCAAGATCTTTCCGCATATGGC 59.773 50.000 4.86 0.00 39.90 4.40
77 78 2.227388 GCCAAGATCTTTCCGCATATGG 59.773 50.000 4.86 2.42 0.00 2.74
78 79 3.144506 AGCCAAGATCTTTCCGCATATG 58.855 45.455 4.86 0.00 0.00 1.78
79 80 3.498774 AGCCAAGATCTTTCCGCATAT 57.501 42.857 4.86 0.00 0.00 1.78
80 81 2.945008 CAAGCCAAGATCTTTCCGCATA 59.055 45.455 4.86 0.00 0.00 3.14
81 82 1.747355 CAAGCCAAGATCTTTCCGCAT 59.253 47.619 4.86 0.00 0.00 4.73
82 83 1.167851 CAAGCCAAGATCTTTCCGCA 58.832 50.000 4.86 0.00 0.00 5.69
83 84 1.453155 TCAAGCCAAGATCTTTCCGC 58.547 50.000 4.86 7.96 0.00 5.54
84 85 3.944015 AGAATCAAGCCAAGATCTTTCCG 59.056 43.478 4.86 0.00 0.00 4.30
85 86 4.704057 ACAGAATCAAGCCAAGATCTTTCC 59.296 41.667 4.86 0.00 0.00 3.13
86 87 5.893897 ACAGAATCAAGCCAAGATCTTTC 57.106 39.130 4.86 0.61 0.00 2.62
87 88 5.884792 CCTACAGAATCAAGCCAAGATCTTT 59.115 40.000 4.86 0.00 0.00 2.52
88 89 5.045286 ACCTACAGAATCAAGCCAAGATCTT 60.045 40.000 0.88 0.88 0.00 2.40
89 90 4.472833 ACCTACAGAATCAAGCCAAGATCT 59.527 41.667 0.00 0.00 0.00 2.75
90 91 4.775236 ACCTACAGAATCAAGCCAAGATC 58.225 43.478 0.00 0.00 0.00 2.75
91 92 4.472833 AGACCTACAGAATCAAGCCAAGAT 59.527 41.667 0.00 0.00 0.00 2.40
92 93 3.840666 AGACCTACAGAATCAAGCCAAGA 59.159 43.478 0.00 0.00 0.00 3.02
93 94 4.213564 AGACCTACAGAATCAAGCCAAG 57.786 45.455 0.00 0.00 0.00 3.61
94 95 4.640771 AAGACCTACAGAATCAAGCCAA 57.359 40.909 0.00 0.00 0.00 4.52
95 96 4.162320 CCTAAGACCTACAGAATCAAGCCA 59.838 45.833 0.00 0.00 0.00 4.75
96 97 4.443598 CCCTAAGACCTACAGAATCAAGCC 60.444 50.000 0.00 0.00 0.00 4.35
97 98 4.162509 ACCCTAAGACCTACAGAATCAAGC 59.837 45.833 0.00 0.00 0.00 4.01
98 99 5.941555 ACCCTAAGACCTACAGAATCAAG 57.058 43.478 0.00 0.00 0.00 3.02
99 100 6.023603 AGAACCCTAAGACCTACAGAATCAA 58.976 40.000 0.00 0.00 0.00 2.57
100 101 5.590818 AGAACCCTAAGACCTACAGAATCA 58.409 41.667 0.00 0.00 0.00 2.57
101 102 6.547930 AAGAACCCTAAGACCTACAGAATC 57.452 41.667 0.00 0.00 0.00 2.52
102 103 8.625467 AATAAGAACCCTAAGACCTACAGAAT 57.375 34.615 0.00 0.00 0.00 2.40
103 104 9.551339 TTAATAAGAACCCTAAGACCTACAGAA 57.449 33.333 0.00 0.00 0.00 3.02
104 105 9.198475 CTTAATAAGAACCCTAAGACCTACAGA 57.802 37.037 0.00 0.00 0.00 3.41
105 106 7.927092 GCTTAATAAGAACCCTAAGACCTACAG 59.073 40.741 3.88 0.00 0.00 2.74
106 107 7.622479 AGCTTAATAAGAACCCTAAGACCTACA 59.378 37.037 3.88 0.00 0.00 2.74
107 108 8.020777 AGCTTAATAAGAACCCTAAGACCTAC 57.979 38.462 3.88 0.00 0.00 3.18
108 109 8.619683 AAGCTTAATAAGAACCCTAAGACCTA 57.380 34.615 3.88 0.00 0.00 3.08
109 110 7.512117 AAGCTTAATAAGAACCCTAAGACCT 57.488 36.000 3.88 0.00 0.00 3.85
110 111 9.848710 ATTAAGCTTAATAAGAACCCTAAGACC 57.151 33.333 26.58 0.00 31.90 3.85
115 116 9.338622 GCTCAATTAAGCTTAATAAGAACCCTA 57.661 33.333 28.72 12.83 39.27 3.53
116 117 7.285629 GGCTCAATTAAGCTTAATAAGAACCCT 59.714 37.037 28.72 14.28 42.13 4.34
117 118 7.426410 GGCTCAATTAAGCTTAATAAGAACCC 58.574 38.462 28.72 24.30 42.13 4.11
118 119 7.285629 AGGGCTCAATTAAGCTTAATAAGAACC 59.714 37.037 28.72 27.72 42.13 3.62
119 120 8.226819 AGGGCTCAATTAAGCTTAATAAGAAC 57.773 34.615 28.72 23.36 42.13 3.01
121 122 9.507329 CATAGGGCTCAATTAAGCTTAATAAGA 57.493 33.333 28.72 25.75 42.13 2.10
122 123 8.734386 CCATAGGGCTCAATTAAGCTTAATAAG 58.266 37.037 27.63 25.62 42.13 1.73
123 124 8.444783 TCCATAGGGCTCAATTAAGCTTAATAA 58.555 33.333 27.63 18.82 42.13 1.40
124 125 7.984475 TCCATAGGGCTCAATTAAGCTTAATA 58.016 34.615 27.63 14.93 42.13 0.98
125 126 6.852404 TCCATAGGGCTCAATTAAGCTTAAT 58.148 36.000 23.22 23.22 42.13 1.40
126 127 6.126478 ACTCCATAGGGCTCAATTAAGCTTAA 60.126 38.462 20.71 20.71 42.13 1.85
127 128 5.369699 ACTCCATAGGGCTCAATTAAGCTTA 59.630 40.000 0.86 0.86 42.13 3.09
128 129 4.166919 ACTCCATAGGGCTCAATTAAGCTT 59.833 41.667 3.48 3.48 42.13 3.74
129 130 3.718956 ACTCCATAGGGCTCAATTAAGCT 59.281 43.478 0.00 0.00 42.13 3.74
130 131 3.817647 CACTCCATAGGGCTCAATTAAGC 59.182 47.826 0.00 0.00 41.73 3.09
131 132 5.059833 GTCACTCCATAGGGCTCAATTAAG 58.940 45.833 0.00 0.00 0.00 1.85
132 133 4.473196 TGTCACTCCATAGGGCTCAATTAA 59.527 41.667 0.00 0.00 0.00 1.40
133 134 4.037222 TGTCACTCCATAGGGCTCAATTA 58.963 43.478 0.00 0.00 0.00 1.40
134 135 2.846206 TGTCACTCCATAGGGCTCAATT 59.154 45.455 0.00 0.00 0.00 2.32
135 136 2.481441 TGTCACTCCATAGGGCTCAAT 58.519 47.619 0.00 0.00 0.00 2.57
136 137 1.951209 TGTCACTCCATAGGGCTCAA 58.049 50.000 0.00 0.00 0.00 3.02
137 138 2.180946 ATGTCACTCCATAGGGCTCA 57.819 50.000 0.00 0.00 0.00 4.26
138 139 2.028567 GCTATGTCACTCCATAGGGCTC 60.029 54.545 9.52 0.00 42.93 4.70
139 140 1.974236 GCTATGTCACTCCATAGGGCT 59.026 52.381 9.52 0.00 42.93 5.19
140 141 1.974236 AGCTATGTCACTCCATAGGGC 59.026 52.381 9.52 0.00 42.93 5.19
141 142 3.234353 TGAGCTATGTCACTCCATAGGG 58.766 50.000 9.52 0.00 42.93 3.53
142 143 6.571605 CATATGAGCTATGTCACTCCATAGG 58.428 44.000 0.00 0.00 42.93 2.57
143 144 6.041511 GCATATGAGCTATGTCACTCCATAG 58.958 44.000 6.97 4.26 44.66 2.23
144 145 5.105187 GGCATATGAGCTATGTCACTCCATA 60.105 44.000 6.97 0.00 41.30 2.74
145 146 4.323333 GGCATATGAGCTATGTCACTCCAT 60.323 45.833 6.97 0.00 41.30 3.41
146 147 3.007290 GGCATATGAGCTATGTCACTCCA 59.993 47.826 6.97 0.00 41.30 3.86
147 148 3.007290 TGGCATATGAGCTATGTCACTCC 59.993 47.826 6.97 0.00 45.31 3.85
148 149 4.263018 TGGCATATGAGCTATGTCACTC 57.737 45.455 6.97 0.00 45.31 3.51
152 153 3.653344 TCGTTGGCATATGAGCTATGTC 58.347 45.455 6.97 0.00 41.88 3.06
153 154 3.751479 TCGTTGGCATATGAGCTATGT 57.249 42.857 6.97 0.00 39.61 2.29
154 155 4.309933 TCTTCGTTGGCATATGAGCTATG 58.690 43.478 6.97 0.00 40.28 2.23
155 156 4.607293 TCTTCGTTGGCATATGAGCTAT 57.393 40.909 6.97 0.00 34.17 2.97
156 157 4.371786 CTTCTTCGTTGGCATATGAGCTA 58.628 43.478 6.97 0.00 34.17 3.32
157 158 2.988010 TCTTCGTTGGCATATGAGCT 57.012 45.000 6.97 0.00 34.17 4.09
158 159 2.286654 GCTTCTTCGTTGGCATATGAGC 60.287 50.000 6.97 0.00 0.00 4.26
159 160 3.201290 AGCTTCTTCGTTGGCATATGAG 58.799 45.455 6.97 0.00 0.00 2.90
160 161 3.266510 AGCTTCTTCGTTGGCATATGA 57.733 42.857 6.97 0.00 0.00 2.15
161 162 4.083643 CCATAGCTTCTTCGTTGGCATATG 60.084 45.833 0.00 0.00 0.00 1.78
162 163 4.067896 CCATAGCTTCTTCGTTGGCATAT 58.932 43.478 0.00 0.00 0.00 1.78
163 164 3.466836 CCATAGCTTCTTCGTTGGCATA 58.533 45.455 0.00 0.00 0.00 3.14
164 165 2.292267 CCATAGCTTCTTCGTTGGCAT 58.708 47.619 0.00 0.00 0.00 4.40
165 166 1.737838 CCATAGCTTCTTCGTTGGCA 58.262 50.000 0.00 0.00 0.00 4.92
166 167 0.378610 GCCATAGCTTCTTCGTTGGC 59.621 55.000 0.00 0.00 42.40 4.52
167 168 1.017387 GGCCATAGCTTCTTCGTTGG 58.983 55.000 0.00 0.00 39.73 3.77
168 169 1.737838 TGGCCATAGCTTCTTCGTTG 58.262 50.000 0.00 0.00 39.73 4.10
169 170 2.027192 TCTTGGCCATAGCTTCTTCGTT 60.027 45.455 6.09 0.00 39.73 3.85
170 171 1.555075 TCTTGGCCATAGCTTCTTCGT 59.445 47.619 6.09 0.00 39.73 3.85
171 172 2.315925 TCTTGGCCATAGCTTCTTCG 57.684 50.000 6.09 0.00 39.73 3.79
172 173 3.243334 GCAATCTTGGCCATAGCTTCTTC 60.243 47.826 6.09 0.00 39.73 2.87
173 174 2.692041 GCAATCTTGGCCATAGCTTCTT 59.308 45.455 6.09 0.00 39.73 2.52
174 175 2.305009 GCAATCTTGGCCATAGCTTCT 58.695 47.619 6.09 0.00 39.73 2.85
175 176 2.026641 TGCAATCTTGGCCATAGCTTC 58.973 47.619 6.09 0.00 39.73 3.86
176 177 2.029623 CTGCAATCTTGGCCATAGCTT 58.970 47.619 6.09 2.10 39.73 3.74
177 178 1.064166 ACTGCAATCTTGGCCATAGCT 60.064 47.619 6.09 0.00 39.73 3.32
178 179 1.396653 ACTGCAATCTTGGCCATAGC 58.603 50.000 6.09 7.38 38.76 2.97
179 180 4.581824 ACATTACTGCAATCTTGGCCATAG 59.418 41.667 6.09 7.48 0.00 2.23
180 181 4.535781 ACATTACTGCAATCTTGGCCATA 58.464 39.130 6.09 0.00 0.00 2.74
181 182 3.368248 ACATTACTGCAATCTTGGCCAT 58.632 40.909 6.09 0.00 0.00 4.40
182 183 2.806434 ACATTACTGCAATCTTGGCCA 58.194 42.857 0.00 0.00 0.00 5.36
183 184 4.981806 TTACATTACTGCAATCTTGGCC 57.018 40.909 0.00 0.00 0.00 5.36
184 185 5.708948 TGTTTACATTACTGCAATCTTGGC 58.291 37.500 0.00 0.00 0.00 4.52
185 186 7.144722 TCTGTTTACATTACTGCAATCTTGG 57.855 36.000 0.00 0.00 0.00 3.61
186 187 9.069078 CAATCTGTTTACATTACTGCAATCTTG 57.931 33.333 0.00 0.00 0.00 3.02
187 188 8.246180 CCAATCTGTTTACATTACTGCAATCTT 58.754 33.333 0.00 0.00 0.00 2.40
188 189 7.611467 TCCAATCTGTTTACATTACTGCAATCT 59.389 33.333 0.00 0.00 0.00 2.40
189 190 7.761409 TCCAATCTGTTTACATTACTGCAATC 58.239 34.615 0.00 0.00 0.00 2.67
190 191 7.148018 CCTCCAATCTGTTTACATTACTGCAAT 60.148 37.037 0.00 0.00 0.00 3.56
191 192 6.150976 CCTCCAATCTGTTTACATTACTGCAA 59.849 38.462 0.00 0.00 0.00 4.08
192 193 5.647658 CCTCCAATCTGTTTACATTACTGCA 59.352 40.000 0.00 0.00 0.00 4.41
193 194 5.880332 TCCTCCAATCTGTTTACATTACTGC 59.120 40.000 0.00 0.00 0.00 4.40
194 195 6.037610 GCTCCTCCAATCTGTTTACATTACTG 59.962 42.308 0.00 0.00 0.00 2.74
195 196 6.116126 GCTCCTCCAATCTGTTTACATTACT 58.884 40.000 0.00 0.00 0.00 2.24
196 197 5.880332 TGCTCCTCCAATCTGTTTACATTAC 59.120 40.000 0.00 0.00 0.00 1.89
197 198 6.061022 TGCTCCTCCAATCTGTTTACATTA 57.939 37.500 0.00 0.00 0.00 1.90
198 199 4.922206 TGCTCCTCCAATCTGTTTACATT 58.078 39.130 0.00 0.00 0.00 2.71
199 200 4.574674 TGCTCCTCCAATCTGTTTACAT 57.425 40.909 0.00 0.00 0.00 2.29
200 201 4.263462 ACATGCTCCTCCAATCTGTTTACA 60.263 41.667 0.00 0.00 0.00 2.41
201 202 4.265073 ACATGCTCCTCCAATCTGTTTAC 58.735 43.478 0.00 0.00 0.00 2.01
202 203 4.574674 ACATGCTCCTCCAATCTGTTTA 57.425 40.909 0.00 0.00 0.00 2.01
203 204 3.446442 ACATGCTCCTCCAATCTGTTT 57.554 42.857 0.00 0.00 0.00 2.83
204 205 3.350833 GAACATGCTCCTCCAATCTGTT 58.649 45.455 0.00 0.00 0.00 3.16
205 206 2.356535 GGAACATGCTCCTCCAATCTGT 60.357 50.000 7.95 0.00 32.21 3.41
206 207 2.295885 GGAACATGCTCCTCCAATCTG 58.704 52.381 7.95 0.00 32.21 2.90
207 208 1.918262 TGGAACATGCTCCTCCAATCT 59.082 47.619 15.99 0.00 36.30 2.40
208 209 2.425143 TGGAACATGCTCCTCCAATC 57.575 50.000 15.99 0.00 36.30 2.67
209 210 2.042162 ACTTGGAACATGCTCCTCCAAT 59.958 45.455 15.99 6.27 45.73 3.16
210 211 1.425066 ACTTGGAACATGCTCCTCCAA 59.575 47.619 15.99 15.30 44.95 3.53
211 212 1.067295 ACTTGGAACATGCTCCTCCA 58.933 50.000 15.99 9.16 39.30 3.86
212 213 2.206576 AACTTGGAACATGCTCCTCC 57.793 50.000 15.99 6.73 39.30 4.30
213 214 4.072131 TGTTAACTTGGAACATGCTCCTC 58.928 43.478 15.99 0.00 39.30 3.71
214 215 4.098914 TGTTAACTTGGAACATGCTCCT 57.901 40.909 15.99 0.00 39.30 3.69
224 225 9.403583 GGGATTCTAATTACATGTTAACTTGGA 57.596 33.333 21.54 13.27 0.00 3.53
225 226 9.408648 AGGGATTCTAATTACATGTTAACTTGG 57.591 33.333 21.54 7.98 0.00 3.61
253 254 2.201210 CCCCAAGCACCCAAGGTT 59.799 61.111 0.00 0.00 31.02 3.50
254 255 4.621087 GCCCCAAGCACCCAAGGT 62.621 66.667 0.00 0.00 42.97 3.50
263 264 1.202475 TCAAAACGAAAAGCCCCAAGC 60.202 47.619 0.00 0.00 44.25 4.01
266 267 0.747852 GGTCAAAACGAAAAGCCCCA 59.252 50.000 0.00 0.00 0.00 4.96
269 270 1.868109 GCTGGGTCAAAACGAAAAGCC 60.868 52.381 0.00 0.00 0.00 4.35
270 271 1.487482 GCTGGGTCAAAACGAAAAGC 58.513 50.000 0.00 0.00 0.00 3.51
276 277 0.030638 CAAGTGGCTGGGTCAAAACG 59.969 55.000 0.00 0.00 0.00 3.60
291 292 5.741982 GTGTAAATTCGTGACAAAAGCAAGT 59.258 36.000 0.00 0.00 0.00 3.16
295 296 5.270853 ACTGTGTAAATTCGTGACAAAAGC 58.729 37.500 0.00 0.00 0.00 3.51
328 330 2.806244 GTGTAAACTCGTGGCAGTGAAT 59.194 45.455 0.00 0.00 0.00 2.57
356 365 1.278238 GAAGAAGTCGCCACATACGG 58.722 55.000 0.00 0.00 0.00 4.02
357 366 1.990799 TGAAGAAGTCGCCACATACG 58.009 50.000 0.00 0.00 0.00 3.06
358 367 4.184629 AGATTGAAGAAGTCGCCACATAC 58.815 43.478 0.00 0.00 0.00 2.39
359 368 4.081697 TGAGATTGAAGAAGTCGCCACATA 60.082 41.667 0.00 0.00 0.00 2.29
360 369 3.265791 GAGATTGAAGAAGTCGCCACAT 58.734 45.455 0.00 0.00 0.00 3.21
361 370 2.037121 TGAGATTGAAGAAGTCGCCACA 59.963 45.455 0.00 0.00 0.00 4.17
362 371 2.688507 TGAGATTGAAGAAGTCGCCAC 58.311 47.619 0.00 0.00 0.00 5.01
367 376 4.899502 TGGACCTTGAGATTGAAGAAGTC 58.100 43.478 0.00 0.00 0.00 3.01
385 394 4.679373 TTGAGATTCTGAGCCTATGGAC 57.321 45.455 0.00 0.00 0.00 4.02
388 397 5.277876 GCACATTTGAGATTCTGAGCCTATG 60.278 44.000 0.00 0.00 0.00 2.23
408 417 5.123227 GCACATCCTACCTTTATAAGCACA 58.877 41.667 0.00 0.00 0.00 4.57
448 457 5.402568 CACATGTACGCACATATACTTCTCC 59.597 44.000 0.00 0.00 43.73 3.71
456 465 3.177997 TGCTCACATGTACGCACATAT 57.822 42.857 14.99 0.00 43.73 1.78
482 491 6.705825 AGTTTTAAACGAAACACGGTATAGGT 59.294 34.615 1.95 0.00 42.92 3.08
486 495 5.526846 TGGAGTTTTAAACGAAACACGGTAT 59.473 36.000 1.95 0.00 42.92 2.73
498 507 7.190871 TCGTTTCAATCAGTGGAGTTTTAAAC 58.809 34.615 0.00 0.00 0.00 2.01
501 510 6.128661 CGATCGTTTCAATCAGTGGAGTTTTA 60.129 38.462 7.03 0.00 0.00 1.52
511 520 2.309528 TCCCCGATCGTTTCAATCAG 57.690 50.000 15.09 0.00 0.00 2.90
514 523 3.386726 TGTAGATCCCCGATCGTTTCAAT 59.613 43.478 15.09 0.00 43.17 2.57
515 524 2.761767 TGTAGATCCCCGATCGTTTCAA 59.238 45.455 15.09 0.00 43.17 2.69
516 525 2.361119 CTGTAGATCCCCGATCGTTTCA 59.639 50.000 15.09 0.00 43.17 2.69
527 536 0.464554 GGTGCTTGGCTGTAGATCCC 60.465 60.000 0.00 0.00 0.00 3.85
534 543 4.982701 GGCAGGGTGCTTGGCTGT 62.983 66.667 0.00 0.00 44.28 4.40
538 547 3.297620 GTGTGGCAGGGTGCTTGG 61.298 66.667 0.00 0.00 44.28 3.61
555 564 7.481483 TCTGTTTTATCAATCGATTTTTCTGCG 59.519 33.333 8.21 0.00 32.73 5.18
605 614 1.542472 CCATGTTGCTTGTCTGCATGA 59.458 47.619 0.00 0.00 42.96 3.07
606 615 1.990799 CCATGTTGCTTGTCTGCATG 58.009 50.000 0.00 0.00 42.96 4.06
607 616 0.245539 GCCATGTTGCTTGTCTGCAT 59.754 50.000 0.00 0.00 42.96 3.96
608 617 1.108132 TGCCATGTTGCTTGTCTGCA 61.108 50.000 0.00 0.00 41.65 4.41
609 618 0.245539 ATGCCATGTTGCTTGTCTGC 59.754 50.000 0.00 0.00 0.00 4.26
610 619 1.271379 ACATGCCATGTTGCTTGTCTG 59.729 47.619 4.03 0.00 43.65 3.51
611 620 1.624336 ACATGCCATGTTGCTTGTCT 58.376 45.000 4.03 0.00 43.65 3.41
617 626 9.864628 AGAATCTTTCTGAACATGCCATGTTGC 62.865 40.741 26.71 17.48 44.24 4.17
618 627 6.571731 AGAATCTTTCTGAACATGCCATGTTG 60.572 38.462 26.71 13.81 44.24 3.33
619 628 5.479375 AGAATCTTTCTGAACATGCCATGTT 59.521 36.000 22.40 22.40 43.50 2.71
620 629 5.014858 AGAATCTTTCTGAACATGCCATGT 58.985 37.500 4.03 4.03 41.41 3.21
762 791 3.925688 ATCGTAATGCGTAAAGTGCAG 57.074 42.857 0.00 0.00 46.98 4.41
783 815 8.037758 CACATGTAAACTCTTGGAAGTAGAGAT 58.962 37.037 0.00 0.00 41.32 2.75
832 866 4.948621 AGAGAATCAAGCCAAGATCTTTGG 59.051 41.667 4.86 11.81 39.26 3.28
874 914 1.554617 CCTTGGCCCAAATTAAGGTGG 59.445 52.381 0.00 0.98 35.95 4.61
882 923 1.014804 TGTATCCCCTTGGCCCAAAT 58.985 50.000 0.00 0.00 0.00 2.32
906 947 1.309499 ACTCTTCTCCGTGCTCCTCG 61.309 60.000 0.00 0.00 0.00 4.63
944 989 3.439540 CAACGTGGAATGGGGGCG 61.440 66.667 0.00 0.00 0.00 6.13
990 1040 1.731257 GAGCGGCATAGTAGAGCGC 60.731 63.158 0.00 0.00 0.00 5.92
1101 1177 3.319198 GCCCACCGAGAGTTCCCA 61.319 66.667 0.00 0.00 0.00 4.37
1137 1213 2.910479 TCGTGCCTGTCTGTCGGT 60.910 61.111 0.00 0.00 0.00 4.69
1143 1219 4.363990 CCGTGCTCGTGCCTGTCT 62.364 66.667 7.05 0.00 38.71 3.41
1147 1223 4.457496 CATCCCGTGCTCGTGCCT 62.457 66.667 7.05 0.00 38.71 4.75
1254 1330 1.276140 TATAGGTGCGGGCCTTTGGT 61.276 55.000 0.84 0.00 39.94 3.67
1268 1344 7.228314 TCGAGGAATGACAAGGTATTATAGG 57.772 40.000 0.00 0.00 0.00 2.57
1318 1401 7.875041 ACCATCAATCAAGAGCTATGTATGTAC 59.125 37.037 0.00 0.00 0.00 2.90
1449 1545 7.170393 TGCACAAGTACTGAAGTAGTCATAT 57.830 36.000 0.00 0.00 40.89 1.78
1547 1643 7.806690 TGCAACTTTTTATACTCAGTGACATC 58.193 34.615 0.00 0.00 0.00 3.06
1554 1650 7.819900 ACTACCTCTGCAACTTTTTATACTCAG 59.180 37.037 0.00 0.00 0.00 3.35
1555 1651 7.676947 ACTACCTCTGCAACTTTTTATACTCA 58.323 34.615 0.00 0.00 0.00 3.41
1556 1652 9.819267 ATACTACCTCTGCAACTTTTTATACTC 57.181 33.333 0.00 0.00 0.00 2.59
1570 1675 6.018180 CGGTCCAAAATTAATACTACCTCTGC 60.018 42.308 0.00 0.00 0.00 4.26
1595 1700 4.909696 TCGATCTCTTCTCCTTGTGATC 57.090 45.455 0.00 0.00 32.86 2.92
1613 1718 9.608617 GAGTAACACAGAAATATAATCGATCGA 57.391 33.333 21.86 21.86 0.00 3.59
1614 1719 9.613957 AGAGTAACACAGAAATATAATCGATCG 57.386 33.333 9.36 9.36 0.00 3.69
1641 1920 2.035783 GGGTCCCTTCCCTGCAAC 59.964 66.667 0.00 0.00 43.85 4.17
1693 1972 1.674221 GCGGTCTTCTGCACAGAGATT 60.674 52.381 0.00 0.00 44.61 2.40
1810 2089 0.608035 CCACCTTTTGGGCGAGCTTA 60.608 55.000 0.00 0.00 46.08 3.09
1900 2179 1.045911 AGGAGGAGGATTCGTCTGCC 61.046 60.000 6.35 7.78 38.11 4.85
1903 2182 2.383855 CAAGAGGAGGAGGATTCGTCT 58.616 52.381 6.35 0.00 40.43 4.18
1910 2189 2.364317 CGGGCAAGAGGAGGAGGA 60.364 66.667 0.00 0.00 0.00 3.71
1915 2194 2.685380 AGGTCCGGGCAAGAGGAG 60.685 66.667 9.07 0.00 37.18 3.69
2056 2335 1.078143 GCTCTGGAAGGCCGTCAAT 60.078 57.895 20.72 0.00 36.79 2.57
2061 2340 1.684386 ATCTCTGCTCTGGAAGGCCG 61.684 60.000 0.00 0.00 36.79 6.13
2080 2359 0.536233 TTCTTGCACCAAAGCGCCTA 60.536 50.000 2.29 0.00 37.31 3.93
2102 2381 6.465781 CCGTTTATTTATAGCGCTGCATTATG 59.534 38.462 22.90 3.23 0.00 1.90
2151 2430 8.789762 CCAGATAGAGATAGATAGAGCATGATG 58.210 40.741 0.00 0.00 0.00 3.07
2225 2511 3.076621 CTGTAGTACACCACTCACCGTA 58.923 50.000 0.00 0.00 38.80 4.02
2226 2512 1.884579 CTGTAGTACACCACTCACCGT 59.115 52.381 0.00 0.00 38.80 4.83
2227 2513 1.402456 GCTGTAGTACACCACTCACCG 60.402 57.143 0.00 0.00 38.80 4.94
2228 2514 1.616865 TGCTGTAGTACACCACTCACC 59.383 52.381 0.00 0.00 38.80 4.02
2229 2515 2.557056 TCTGCTGTAGTACACCACTCAC 59.443 50.000 0.00 0.00 38.80 3.51
2855 3152 8.517878 CATCTTTTCAAACATGAACTATGGAGT 58.482 33.333 0.00 0.00 41.25 3.85
2962 3259 3.643763 ACACAGAACGATGAGTCTTGAC 58.356 45.455 0.00 0.00 0.00 3.18
2970 3267 9.834628 GGAAAATAAATAAACACAGAACGATGA 57.165 29.630 0.00 0.00 0.00 2.92
2999 3296 8.587608 TCTTTGCCATCAGTTAATTCAGAAAAT 58.412 29.630 0.00 0.00 0.00 1.82
3058 3364 2.440065 GGCATCCCAATCACCGCA 60.440 61.111 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.