Multiple sequence alignment - TraesCS5A01G545600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G545600 chr5A 100.000 3831 0 0 1 3831 700438337 700442167 0.000000e+00 7075.0
1 TraesCS5A01G545600 chr5A 91.111 90 5 3 3262 3349 59700882 59700794 6.720000e-23 119.0
2 TraesCS5A01G545600 chr5A 90.805 87 6 2 3263 3348 653297896 653297981 8.700000e-22 115.0
3 TraesCS5A01G545600 chr5A 90.698 86 7 1 3261 3345 647485069 647484984 3.130000e-21 113.0
4 TraesCS5A01G545600 chr4B 88.392 1318 63 39 768 2037 660582016 660583291 0.000000e+00 1504.0
5 TraesCS5A01G545600 chr4B 88.372 731 59 15 2391 3110 660583629 660584344 0.000000e+00 856.0
6 TraesCS5A01G545600 chr4B 88.052 385 30 8 144 518 660581301 660581679 3.510000e-120 442.0
7 TraesCS5A01G545600 chr4B 81.882 425 48 13 3403 3827 660586727 660587122 7.930000e-87 331.0
8 TraesCS5A01G545600 chr4B 92.982 57 4 0 3343 3399 660584554 660584610 2.450000e-12 84.2
9 TraesCS5A01G545600 chr4B 94.340 53 3 0 9 61 422032212 422032160 8.820000e-12 82.4
10 TraesCS5A01G545600 chrUn 87.557 1310 65 47 784 2036 110516472 110517740 0.000000e+00 1426.0
11 TraesCS5A01G545600 chrUn 93.333 525 31 3 2588 3110 110518286 110518808 0.000000e+00 773.0
12 TraesCS5A01G545600 chrUn 94.517 383 19 2 144 524 110515169 110515551 1.190000e-164 590.0
13 TraesCS5A01G545600 chrUn 81.636 599 81 19 3107 3697 110518849 110519426 1.610000e-128 470.0
14 TraesCS5A01G545600 chr3D 93.258 89 5 1 3261 3348 324311165 324311077 3.110000e-26 130.0
15 TraesCS5A01G545600 chr3A 93.258 89 5 1 3261 3348 397141372 397141460 3.110000e-26 130.0
16 TraesCS5A01G545600 chr3A 91.954 87 6 1 3261 3346 58929425 58929339 1.870000e-23 121.0
17 TraesCS5A01G545600 chr3B 92.135 89 6 1 3261 3348 394954548 394954636 1.450000e-24 124.0
18 TraesCS5A01G545600 chr3B 89.888 89 8 1 3262 3349 199529383 199529295 3.130000e-21 113.0
19 TraesCS5A01G545600 chr1D 91.954 87 6 1 3261 3346 59876032 59875946 1.870000e-23 121.0
20 TraesCS5A01G545600 chr7D 91.379 58 5 0 1335 1392 66072179 66072236 3.170000e-11 80.5
21 TraesCS5A01G545600 chr4D 97.778 45 1 0 17 61 340550597 340550553 1.140000e-10 78.7
22 TraesCS5A01G545600 chr4A 92.593 54 4 0 6 59 127485594 127485647 1.140000e-10 78.7
23 TraesCS5A01G545600 chr4A 92.157 51 4 0 9 59 127286894 127286844 5.310000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G545600 chr5A 700438337 700442167 3830 False 7075.00 7075 100.00000 1 3831 1 chr5A.!!$F2 3830
1 TraesCS5A01G545600 chr4B 660581301 660587122 5821 False 643.44 1504 87.93600 144 3827 5 chr4B.!!$F1 3683
2 TraesCS5A01G545600 chrUn 110515169 110519426 4257 False 814.75 1426 89.26075 144 3697 4 chrUn.!!$F1 3553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.108424 GAGCACTGCTCGGTTCTCAT 60.108 55.0 15.23 0.0 45.85 2.90 F
1180 1975 0.178900 AACCGGTTCTCCCTCTCCTT 60.179 55.0 15.86 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 2375 0.028505 CATCGCCTGCTTATGCACAC 59.971 55.0 0.0 0.0 45.31 3.82 R
3022 4054 0.036388 TGAATCCGGCAGAGGTTGAC 60.036 55.0 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.363990 CTCACGGGCGTGTGCTCT 62.364 66.667 0.00 0.00 45.55 4.09
35 36 2.986979 TCACGGGCGTGTGCTCTA 60.987 61.111 0.00 0.00 45.55 2.43
36 37 2.507102 CACGGGCGTGTGCTCTAG 60.507 66.667 0.00 0.00 40.44 2.43
37 38 4.436998 ACGGGCGTGTGCTCTAGC 62.437 66.667 0.00 0.00 40.44 3.42
41 42 3.169198 GCGTGTGCTCTAGCCAAC 58.831 61.111 0.00 0.00 41.18 3.77
42 43 2.391389 GCGTGTGCTCTAGCCAACC 61.391 63.158 0.00 0.00 41.18 3.77
43 44 2.094659 CGTGTGCTCTAGCCAACCG 61.095 63.158 0.00 0.00 41.18 4.44
44 45 1.292223 GTGTGCTCTAGCCAACCGA 59.708 57.895 0.00 0.00 41.18 4.69
45 46 0.737715 GTGTGCTCTAGCCAACCGAG 60.738 60.000 0.00 0.00 41.18 4.63
48 49 4.504132 CTCTAGCCAACCGAGCAC 57.496 61.111 0.00 0.00 0.00 4.40
49 50 1.893786 CTCTAGCCAACCGAGCACT 59.106 57.895 0.00 0.00 0.00 4.40
50 51 0.459237 CTCTAGCCAACCGAGCACTG 60.459 60.000 0.00 0.00 0.00 3.66
51 52 2.047274 TAGCCAACCGAGCACTGC 60.047 61.111 0.00 0.00 0.00 4.40
52 53 2.513026 CTAGCCAACCGAGCACTGCT 62.513 60.000 2.22 2.22 43.88 4.24
60 61 4.177229 GAGCACTGCTCGGTTCTC 57.823 61.111 15.23 0.00 45.85 2.87
61 62 1.290324 GAGCACTGCTCGGTTCTCA 59.710 57.895 15.23 0.00 45.85 3.27
62 63 0.108424 GAGCACTGCTCGGTTCTCAT 60.108 55.000 15.23 0.00 45.85 2.90
63 64 0.322975 AGCACTGCTCGGTTCTCATT 59.677 50.000 0.00 0.00 30.62 2.57
64 65 0.723981 GCACTGCTCGGTTCTCATTC 59.276 55.000 0.00 0.00 0.00 2.67
65 66 1.941209 GCACTGCTCGGTTCTCATTCA 60.941 52.381 0.00 0.00 0.00 2.57
66 67 2.416747 CACTGCTCGGTTCTCATTCAA 58.583 47.619 0.00 0.00 0.00 2.69
67 68 2.414481 CACTGCTCGGTTCTCATTCAAG 59.586 50.000 0.00 0.00 0.00 3.02
68 69 2.037772 ACTGCTCGGTTCTCATTCAAGT 59.962 45.455 0.00 0.00 0.00 3.16
69 70 2.670414 CTGCTCGGTTCTCATTCAAGTC 59.330 50.000 0.00 0.00 0.00 3.01
70 71 2.003301 GCTCGGTTCTCATTCAAGTCC 58.997 52.381 0.00 0.00 0.00 3.85
71 72 2.612972 GCTCGGTTCTCATTCAAGTCCA 60.613 50.000 0.00 0.00 0.00 4.02
72 73 3.866651 CTCGGTTCTCATTCAAGTCCAT 58.133 45.455 0.00 0.00 0.00 3.41
73 74 4.256920 CTCGGTTCTCATTCAAGTCCATT 58.743 43.478 0.00 0.00 0.00 3.16
74 75 4.651778 TCGGTTCTCATTCAAGTCCATTT 58.348 39.130 0.00 0.00 0.00 2.32
75 76 5.070001 TCGGTTCTCATTCAAGTCCATTTT 58.930 37.500 0.00 0.00 0.00 1.82
76 77 5.534654 TCGGTTCTCATTCAAGTCCATTTTT 59.465 36.000 0.00 0.00 0.00 1.94
103 104 3.842732 TCAATGAGTTGAAGCATGCAG 57.157 42.857 21.98 0.00 41.22 4.41
104 105 3.151554 TCAATGAGTTGAAGCATGCAGT 58.848 40.909 21.98 7.09 41.22 4.40
105 106 3.570975 TCAATGAGTTGAAGCATGCAGTT 59.429 39.130 21.98 6.12 41.22 3.16
106 107 3.570926 ATGAGTTGAAGCATGCAGTTG 57.429 42.857 21.98 0.00 0.00 3.16
107 108 1.610038 TGAGTTGAAGCATGCAGTTGG 59.390 47.619 21.98 0.00 0.00 3.77
108 109 0.316204 AGTTGAAGCATGCAGTTGGC 59.684 50.000 21.98 5.29 45.13 4.52
109 110 0.316204 GTTGAAGCATGCAGTTGGCT 59.684 50.000 21.98 0.00 45.15 4.75
110 111 0.315886 TTGAAGCATGCAGTTGGCTG 59.684 50.000 21.98 0.00 45.15 4.85
122 123 4.989279 CAGTTGGCTGCTAATTAATGGT 57.011 40.909 0.71 0.00 35.77 3.55
123 124 5.329035 CAGTTGGCTGCTAATTAATGGTT 57.671 39.130 0.71 0.00 35.77 3.67
124 125 5.104374 CAGTTGGCTGCTAATTAATGGTTG 58.896 41.667 0.71 0.00 35.77 3.77
125 126 3.799281 TGGCTGCTAATTAATGGTTGC 57.201 42.857 0.00 0.00 0.00 4.17
126 127 3.364549 TGGCTGCTAATTAATGGTTGCT 58.635 40.909 0.00 0.00 0.00 3.91
127 128 3.768757 TGGCTGCTAATTAATGGTTGCTT 59.231 39.130 0.00 0.00 0.00 3.91
128 129 4.952957 TGGCTGCTAATTAATGGTTGCTTA 59.047 37.500 0.00 0.00 0.00 3.09
129 130 5.598005 TGGCTGCTAATTAATGGTTGCTTAT 59.402 36.000 0.00 0.00 0.00 1.73
130 131 5.922544 GGCTGCTAATTAATGGTTGCTTATG 59.077 40.000 0.00 0.00 0.00 1.90
131 132 5.922544 GCTGCTAATTAATGGTTGCTTATGG 59.077 40.000 0.00 0.00 0.00 2.74
132 133 6.461509 GCTGCTAATTAATGGTTGCTTATGGT 60.462 38.462 0.00 0.00 0.00 3.55
133 134 7.416964 TGCTAATTAATGGTTGCTTATGGTT 57.583 32.000 0.00 0.00 0.00 3.67
134 135 8.526667 TGCTAATTAATGGTTGCTTATGGTTA 57.473 30.769 0.00 0.00 0.00 2.85
135 136 9.142014 TGCTAATTAATGGTTGCTTATGGTTAT 57.858 29.630 0.00 0.00 0.00 1.89
136 137 9.626045 GCTAATTAATGGTTGCTTATGGTTATC 57.374 33.333 0.00 0.00 0.00 1.75
137 138 9.825972 CTAATTAATGGTTGCTTATGGTTATCG 57.174 33.333 0.00 0.00 0.00 2.92
138 139 8.458573 AATTAATGGTTGCTTATGGTTATCGA 57.541 30.769 0.00 0.00 0.00 3.59
139 140 7.867305 TTAATGGTTGCTTATGGTTATCGAA 57.133 32.000 0.00 0.00 0.00 3.71
140 141 6.767524 AATGGTTGCTTATGGTTATCGAAA 57.232 33.333 0.00 0.00 0.00 3.46
141 142 6.767524 ATGGTTGCTTATGGTTATCGAAAA 57.232 33.333 0.00 0.00 0.00 2.29
142 143 6.576662 TGGTTGCTTATGGTTATCGAAAAA 57.423 33.333 0.00 0.00 0.00 1.94
143 144 7.164230 TGGTTGCTTATGGTTATCGAAAAAT 57.836 32.000 0.00 0.00 0.00 1.82
144 145 7.254852 TGGTTGCTTATGGTTATCGAAAAATC 58.745 34.615 0.00 0.00 0.00 2.17
145 146 6.695713 GGTTGCTTATGGTTATCGAAAAATCC 59.304 38.462 0.00 0.00 0.00 3.01
182 183 3.421844 GACCACATTCCCTAGCTTTGTT 58.578 45.455 0.00 0.00 0.00 2.83
200 201 4.124238 TTGTTTTCAACTCGAAGGTCGAT 58.876 39.130 0.13 0.00 40.49 3.59
219 220 2.368655 TGACATCGTGACATGAGTGG 57.631 50.000 0.00 0.00 0.00 4.00
239 240 3.005684 TGGCATGGTTTCTGTGACATTTC 59.994 43.478 0.00 0.00 0.00 2.17
333 337 4.170292 AGAGCAAAAGCAGTAATGCAAG 57.830 40.909 18.53 4.96 41.18 4.01
345 349 5.734720 CAGTAATGCAAGGAGGTTAAGAGA 58.265 41.667 0.00 0.00 0.00 3.10
382 386 6.530120 TGTAGTCTGAGAAATTGGCAAGTTA 58.470 36.000 13.41 0.00 0.00 2.24
383 387 5.948992 AGTCTGAGAAATTGGCAAGTTAC 57.051 39.130 13.41 10.85 0.00 2.50
520 533 4.618067 CGTGTCATGTTGATCCAAATTGTG 59.382 41.667 0.00 0.00 0.00 3.33
524 537 5.630680 GTCATGTTGATCCAAATTGTGTCAC 59.369 40.000 0.00 0.00 0.00 3.67
525 538 4.221926 TGTTGATCCAAATTGTGTCACG 57.778 40.909 0.00 0.00 0.00 4.35
526 539 3.629855 TGTTGATCCAAATTGTGTCACGT 59.370 39.130 0.00 0.00 0.00 4.49
527 540 3.894782 TGATCCAAATTGTGTCACGTG 57.105 42.857 9.94 9.94 0.00 4.49
528 541 2.551887 TGATCCAAATTGTGTCACGTGG 59.448 45.455 17.00 3.78 0.00 4.94
530 543 0.383590 CCAAATTGTGTCACGTGGCA 59.616 50.000 20.89 20.89 0.00 4.92
533 546 3.304996 CCAAATTGTGTCACGTGGCATAA 60.305 43.478 30.12 30.12 35.33 1.90
534 547 4.294232 CAAATTGTGTCACGTGGCATAAA 58.706 39.130 31.29 25.03 34.57 1.40
535 548 4.782019 AATTGTGTCACGTGGCATAAAT 57.218 36.364 31.29 25.93 34.57 1.40
539 552 3.123790 TGTGTCACGTGGCATAAATAACG 59.876 43.478 27.60 0.00 41.64 3.18
542 555 4.143073 TGTCACGTGGCATAAATAACGTTC 60.143 41.667 20.89 0.00 46.27 3.95
543 556 3.061028 TCACGTGGCATAAATAACGTTCG 59.939 43.478 17.00 0.00 46.27 3.95
545 558 3.432933 ACGTGGCATAAATAACGTTCGTT 59.567 39.130 2.82 14.66 46.27 3.85
546 559 4.083908 ACGTGGCATAAATAACGTTCGTTT 60.084 37.500 15.40 10.28 46.27 3.60
548 561 5.148568 GTGGCATAAATAACGTTCGTTTGT 58.851 37.500 15.40 3.30 0.00 2.83
551 564 5.852229 GGCATAAATAACGTTCGTTTGTTCA 59.148 36.000 15.40 0.00 0.00 3.18
555 583 6.979701 AAATAACGTTCGTTTGTTCATTCC 57.020 33.333 15.40 0.00 0.00 3.01
562 590 2.487762 TCGTTTGTTCATTCCTCATGGC 59.512 45.455 0.00 0.00 33.07 4.40
578 606 2.121291 TGGCTATGTTTGGATTGCGA 57.879 45.000 0.00 0.00 0.00 5.10
594 622 2.166829 TGCGACCAAAATGCACCTTAT 58.833 42.857 0.00 0.00 32.86 1.73
595 623 2.560542 TGCGACCAAAATGCACCTTATT 59.439 40.909 0.00 0.00 32.86 1.40
597 625 4.142491 TGCGACCAAAATGCACCTTATTAG 60.142 41.667 0.00 0.00 32.86 1.73
598 626 4.351192 CGACCAAAATGCACCTTATTAGC 58.649 43.478 0.00 0.00 0.00 3.09
599 627 4.682787 GACCAAAATGCACCTTATTAGCC 58.317 43.478 0.00 0.00 0.00 3.93
663 783 5.043248 CGGACAGTTGCTTTTTGAGAAAAT 58.957 37.500 0.00 0.00 34.45 1.82
675 795 8.011673 GCTTTTTGAGAAAATGCCTGAATTTAC 58.988 33.333 7.94 0.00 42.43 2.01
678 798 7.523293 TTGAGAAAATGCCTGAATTTACTCA 57.477 32.000 0.00 0.00 0.00 3.41
733 856 6.017852 CGATTTCTATCTAGGTTTTCTTGGGC 60.018 42.308 0.00 0.00 0.00 5.36
745 868 0.252193 TCTTGGGCCCAATTTCCAGG 60.252 55.000 37.10 23.00 35.20 4.45
765 888 5.395214 CCAGGAAAGGCAAGTTGTTTACTTT 60.395 40.000 4.48 9.98 44.73 2.66
766 889 6.106003 CAGGAAAGGCAAGTTGTTTACTTTT 58.894 36.000 4.48 0.00 44.73 2.27
800 971 2.111756 GAAAGCAAGTTGTTCACTGCG 58.888 47.619 4.48 0.00 35.12 5.18
845 1585 3.845775 CACTACATTGCCGATTTTGTTCG 59.154 43.478 0.00 0.00 38.83 3.95
890 1630 3.435327 CGACGAATCTATCCTCTCCTCTG 59.565 52.174 0.00 0.00 0.00 3.35
905 1657 1.265236 CTCTGCCCACACTCTCTCTT 58.735 55.000 0.00 0.00 0.00 2.85
925 1677 2.534042 TGGACGAGGGAGAATCTTCT 57.466 50.000 0.00 0.00 41.00 2.85
926 1678 2.821437 TGGACGAGGGAGAATCTTCTT 58.179 47.619 0.00 0.00 37.73 2.52
927 1679 2.761208 TGGACGAGGGAGAATCTTCTTC 59.239 50.000 0.00 0.00 37.73 2.87
943 1698 4.540906 TCTTCTTCTACTAGTCCCACTCCT 59.459 45.833 0.00 0.00 0.00 3.69
990 1745 3.912745 AACCAAACCCTAGCCGCCG 62.913 63.158 0.00 0.00 0.00 6.46
1146 1941 1.082117 AAGGTATCGCCGTCGCTTTG 61.082 55.000 0.00 0.00 43.70 2.77
1162 1957 2.802816 GCTTTGCTTTCTCTCTCGTCAA 59.197 45.455 0.00 0.00 0.00 3.18
1180 1975 0.178900 AACCGGTTCTCCCTCTCCTT 60.179 55.000 15.86 0.00 0.00 3.36
1181 1976 0.178900 ACCGGTTCTCCCTCTCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
1182 1977 0.537653 CCGGTTCTCCCTCTCCTTTC 59.462 60.000 0.00 0.00 0.00 2.62
1183 1978 0.537653 CGGTTCTCCCTCTCCTTTCC 59.462 60.000 0.00 0.00 0.00 3.13
1184 1979 1.897647 CGGTTCTCCCTCTCCTTTCCT 60.898 57.143 0.00 0.00 0.00 3.36
1187 1982 3.442076 GTTCTCCCTCTCCTTTCCTGTA 58.558 50.000 0.00 0.00 0.00 2.74
1200 1995 8.390921 TCTCCTTTCCTGTACCTTAAAATTGAT 58.609 33.333 0.00 0.00 0.00 2.57
1203 1998 8.028938 CCTTTCCTGTACCTTAAAATTGATGTG 58.971 37.037 0.00 0.00 0.00 3.21
1214 2009 1.003262 ATTGATGTGTTTGTGCGCGC 61.003 50.000 27.26 27.26 0.00 6.86
1484 2281 1.550976 CACCTACACCTCACCTCCTTC 59.449 57.143 0.00 0.00 0.00 3.46
1486 2283 2.225650 ACCTACACCTCACCTCCTTCAT 60.226 50.000 0.00 0.00 0.00 2.57
1488 2285 3.264450 CCTACACCTCACCTCCTTCATTT 59.736 47.826 0.00 0.00 0.00 2.32
1489 2286 3.146104 ACACCTCACCTCCTTCATTTG 57.854 47.619 0.00 0.00 0.00 2.32
1491 2288 3.117512 ACACCTCACCTCCTTCATTTGTT 60.118 43.478 0.00 0.00 0.00 2.83
1492 2289 3.254166 CACCTCACCTCCTTCATTTGTTG 59.746 47.826 0.00 0.00 0.00 3.33
1494 2291 3.254166 CCTCACCTCCTTCATTTGTTGTG 59.746 47.826 0.00 0.00 0.00 3.33
1495 2292 4.136796 CTCACCTCCTTCATTTGTTGTGA 58.863 43.478 0.00 0.00 0.00 3.58
1497 2294 5.875224 TCACCTCCTTCATTTGTTGTGATA 58.125 37.500 0.00 0.00 0.00 2.15
1498 2295 6.303054 TCACCTCCTTCATTTGTTGTGATAA 58.697 36.000 0.00 0.00 0.00 1.75
1499 2296 6.206634 TCACCTCCTTCATTTGTTGTGATAAC 59.793 38.462 0.00 0.00 0.00 1.89
1500 2297 5.476945 ACCTCCTTCATTTGTTGTGATAACC 59.523 40.000 0.00 0.00 0.00 2.85
1501 2298 5.476599 CCTCCTTCATTTGTTGTGATAACCA 59.523 40.000 0.00 0.00 0.00 3.67
1505 2302 6.863126 CCTTCATTTGTTGTGATAACCAGTTC 59.137 38.462 0.00 0.00 0.00 3.01
1510 2307 7.523293 TTTGTTGTGATAACCAGTTCATCAT 57.477 32.000 0.00 0.00 31.74 2.45
1511 2308 6.741992 TGTTGTGATAACCAGTTCATCATC 57.258 37.500 0.00 0.00 31.74 2.92
1512 2309 5.351189 TGTTGTGATAACCAGTTCATCATCG 59.649 40.000 0.00 0.00 31.74 3.84
1517 2328 6.757010 GTGATAACCAGTTCATCATCGTAAGT 59.243 38.462 0.00 0.00 39.48 2.24
1523 2334 7.481642 ACCAGTTCATCATCGTAAGTTAGTAG 58.518 38.462 0.00 0.00 39.48 2.57
1544 2355 2.289945 GGTTGCTCTGATCCTCACAAGT 60.290 50.000 0.00 0.00 0.00 3.16
1546 2357 3.325293 TGCTCTGATCCTCACAAGTTC 57.675 47.619 0.00 0.00 0.00 3.01
1549 2360 3.306641 GCTCTGATCCTCACAAGTTCTGT 60.307 47.826 0.00 0.00 39.56 3.41
1552 2363 5.059161 TCTGATCCTCACAAGTTCTGTTTG 58.941 41.667 0.00 0.00 35.47 2.93
1553 2364 4.780815 TGATCCTCACAAGTTCTGTTTGT 58.219 39.130 0.00 0.00 39.23 2.83
1554 2365 5.192927 TGATCCTCACAAGTTCTGTTTGTT 58.807 37.500 0.00 0.00 36.67 2.83
1555 2366 5.652014 TGATCCTCACAAGTTCTGTTTGTTT 59.348 36.000 0.00 0.00 36.67 2.83
1556 2367 5.309323 TCCTCACAAGTTCTGTTTGTTTG 57.691 39.130 0.00 0.00 36.67 2.93
1557 2368 4.764823 TCCTCACAAGTTCTGTTTGTTTGT 59.235 37.500 0.00 0.00 36.67 2.83
1558 2369 5.095490 CCTCACAAGTTCTGTTTGTTTGTC 58.905 41.667 0.00 0.00 36.67 3.18
1559 2370 5.106157 CCTCACAAGTTCTGTTTGTTTGTCT 60.106 40.000 0.00 0.00 36.67 3.41
1560 2371 5.698832 TCACAAGTTCTGTTTGTTTGTCTG 58.301 37.500 0.00 0.00 36.67 3.51
1561 2372 5.240623 TCACAAGTTCTGTTTGTTTGTCTGT 59.759 36.000 0.00 0.00 36.67 3.41
1562 2373 5.343058 CACAAGTTCTGTTTGTTTGTCTGTG 59.657 40.000 0.00 0.00 36.67 3.66
1563 2374 5.009610 ACAAGTTCTGTTTGTTTGTCTGTGT 59.990 36.000 0.00 0.00 35.32 3.72
1564 2375 5.046910 AGTTCTGTTTGTTTGTCTGTGTG 57.953 39.130 0.00 0.00 0.00 3.82
1565 2376 4.518970 AGTTCTGTTTGTTTGTCTGTGTGT 59.481 37.500 0.00 0.00 0.00 3.72
1566 2377 4.418013 TCTGTTTGTTTGTCTGTGTGTG 57.582 40.909 0.00 0.00 0.00 3.82
1567 2378 3.818210 TCTGTTTGTTTGTCTGTGTGTGT 59.182 39.130 0.00 0.00 0.00 3.72
1568 2379 3.894920 TGTTTGTTTGTCTGTGTGTGTG 58.105 40.909 0.00 0.00 0.00 3.82
1569 2380 2.627863 TTGTTTGTCTGTGTGTGTGC 57.372 45.000 0.00 0.00 0.00 4.57
1570 2381 1.528129 TGTTTGTCTGTGTGTGTGCA 58.472 45.000 0.00 0.00 0.00 4.57
1571 2382 2.090760 TGTTTGTCTGTGTGTGTGCAT 58.909 42.857 0.00 0.00 0.00 3.96
1572 2383 3.274288 TGTTTGTCTGTGTGTGTGCATA 58.726 40.909 0.00 0.00 0.00 3.14
1573 2384 3.691609 TGTTTGTCTGTGTGTGTGCATAA 59.308 39.130 0.00 0.00 0.00 1.90
1648 2459 4.526970 AGATGCTTTACGGTTTGATCCAT 58.473 39.130 0.00 0.00 0.00 3.41
1736 2547 0.959553 TCGATGCGGGAACTCCTATC 59.040 55.000 0.00 0.00 35.95 2.08
1787 2606 2.215942 TCACAGTAGTAGCAGCAGGA 57.784 50.000 0.00 0.00 0.00 3.86
1789 2608 1.134965 CACAGTAGTAGCAGCAGGACC 60.135 57.143 0.00 0.00 0.00 4.46
1831 2655 5.659463 TGTTCCAAAACCTGAATGTTTCTG 58.341 37.500 0.00 0.00 37.46 3.02
1918 2742 0.329596 GTCTTCCAATGGGGCAGTCT 59.670 55.000 0.00 0.00 36.21 3.24
1960 2784 8.365647 AGTACCGTTAAGATATATTGTCCCAAG 58.634 37.037 0.00 0.00 0.00 3.61
2011 2835 3.352648 GCACCAAGCCAGTATCCTTTTA 58.647 45.455 0.00 0.00 37.23 1.52
2015 2839 5.242838 CACCAAGCCAGTATCCTTTTAAACA 59.757 40.000 0.00 0.00 0.00 2.83
2019 2843 7.093771 CCAAGCCAGTATCCTTTTAAACATCTT 60.094 37.037 0.00 0.00 0.00 2.40
2020 2844 8.956426 CAAGCCAGTATCCTTTTAAACATCTTA 58.044 33.333 0.00 0.00 0.00 2.10
2043 2867 9.803315 CTTATACTTAGATAAGCACTCACAACA 57.197 33.333 0.00 0.00 36.79 3.33
2046 2870 5.928839 ACTTAGATAAGCACTCACAACACTG 59.071 40.000 0.00 0.00 36.79 3.66
2047 2871 4.607293 AGATAAGCACTCACAACACTGA 57.393 40.909 0.00 0.00 0.00 3.41
2054 2878 5.308014 AGCACTCACAACACTGATCATTTA 58.692 37.500 0.00 0.00 0.00 1.40
2055 2879 5.942236 AGCACTCACAACACTGATCATTTAT 59.058 36.000 0.00 0.00 0.00 1.40
2056 2880 6.093219 AGCACTCACAACACTGATCATTTATC 59.907 38.462 0.00 0.00 34.93 1.75
2057 2881 6.093219 GCACTCACAACACTGATCATTTATCT 59.907 38.462 0.00 0.00 35.45 1.98
2059 2883 9.322773 CACTCACAACACTGATCATTTATCTAT 57.677 33.333 0.00 0.00 35.45 1.98
2077 2901 8.792830 TTATCTATAACCTGAAATATGCAGCC 57.207 34.615 0.00 0.00 32.06 4.85
2078 2902 5.560724 TCTATAACCTGAAATATGCAGCCC 58.439 41.667 0.00 0.00 32.06 5.19
2079 2903 1.780503 AACCTGAAATATGCAGCCCC 58.219 50.000 0.00 0.00 32.06 5.80
2080 2904 0.929244 ACCTGAAATATGCAGCCCCT 59.071 50.000 0.00 0.00 32.06 4.79
2081 2905 1.133668 ACCTGAAATATGCAGCCCCTC 60.134 52.381 0.00 0.00 32.06 4.30
2082 2906 1.144503 CCTGAAATATGCAGCCCCTCT 59.855 52.381 0.00 0.00 32.06 3.69
2083 2907 2.228059 CTGAAATATGCAGCCCCTCTG 58.772 52.381 0.00 0.00 45.62 3.35
2084 2908 1.845791 TGAAATATGCAGCCCCTCTGA 59.154 47.619 0.00 0.00 45.72 3.27
2092 2916 1.500474 CAGCCCCTCTGAATCTGGTA 58.500 55.000 0.00 0.00 45.72 3.25
2096 2920 2.505819 GCCCCTCTGAATCTGGTAAGAA 59.494 50.000 0.00 0.00 35.59 2.52
2099 2923 5.013599 GCCCCTCTGAATCTGGTAAGAATAT 59.986 44.000 0.00 0.00 35.59 1.28
2104 2928 9.434420 CCTCTGAATCTGGTAAGAATATGAATC 57.566 37.037 0.00 0.00 35.59 2.52
2105 2929 9.993454 CTCTGAATCTGGTAAGAATATGAATCA 57.007 33.333 0.00 0.00 35.59 2.57
2130 2954 6.538189 AATTTTGCAACTATTTTTCCGGTG 57.462 33.333 0.00 0.00 0.00 4.94
2131 2955 4.657436 TTTGCAACTATTTTTCCGGTGT 57.343 36.364 0.00 0.00 0.00 4.16
2132 2956 3.634568 TGCAACTATTTTTCCGGTGTG 57.365 42.857 0.00 0.00 0.00 3.82
2142 2966 2.421751 TTCCGGTGTGTCCTTTTCAA 57.578 45.000 0.00 0.00 0.00 2.69
2144 2968 1.210967 TCCGGTGTGTCCTTTTCAACT 59.789 47.619 0.00 0.00 0.00 3.16
2149 2973 4.610945 GGTGTGTCCTTTTCAACTTCATG 58.389 43.478 0.00 0.00 0.00 3.07
2151 2975 3.068024 TGTGTCCTTTTCAACTTCATGCC 59.932 43.478 0.00 0.00 0.00 4.40
2153 2977 3.068024 TGTCCTTTTCAACTTCATGCCAC 59.932 43.478 0.00 0.00 0.00 5.01
2159 2983 2.665165 TCAACTTCATGCCACACCTTT 58.335 42.857 0.00 0.00 0.00 3.11
2160 2984 2.622942 TCAACTTCATGCCACACCTTTC 59.377 45.455 0.00 0.00 0.00 2.62
2161 2985 2.361757 CAACTTCATGCCACACCTTTCA 59.638 45.455 0.00 0.00 0.00 2.69
2162 2986 2.233271 ACTTCATGCCACACCTTTCAG 58.767 47.619 0.00 0.00 0.00 3.02
2163 2987 2.233271 CTTCATGCCACACCTTTCAGT 58.767 47.619 0.00 0.00 0.00 3.41
2165 2989 3.500448 TCATGCCACACCTTTCAGTAA 57.500 42.857 0.00 0.00 0.00 2.24
2166 2990 3.411446 TCATGCCACACCTTTCAGTAAG 58.589 45.455 0.00 0.00 0.00 2.34
2195 3022 9.677567 TTTATAAACTCAAAATGTGTCTTGCTC 57.322 29.630 0.00 0.00 0.00 4.26
2197 3024 3.554934 ACTCAAAATGTGTCTTGCTCCA 58.445 40.909 0.00 0.00 0.00 3.86
2227 3054 5.398236 TCAATGGGATGGAAACCTTGTAAA 58.602 37.500 0.00 0.00 0.00 2.01
2230 3057 7.676043 TCAATGGGATGGAAACCTTGTAAATAA 59.324 33.333 0.00 0.00 0.00 1.40
2233 3060 7.185565 TGGGATGGAAACCTTGTAAATAATGA 58.814 34.615 0.00 0.00 0.00 2.57
2235 3062 7.193595 GGATGGAAACCTTGTAAATAATGACG 58.806 38.462 0.00 0.00 0.00 4.35
2242 3152 9.673454 AAACCTTGTAAATAATGACGTTTTCTC 57.327 29.630 0.00 0.00 0.00 2.87
2254 3164 2.223572 ACGTTTTCTCTGCTTGCCTTTG 60.224 45.455 0.00 0.00 0.00 2.77
2255 3165 2.130395 GTTTTCTCTGCTTGCCTTTGC 58.870 47.619 0.00 0.00 38.26 3.68
2277 3187 5.192327 CATCCCTAATGCTTTGAATGGAC 57.808 43.478 0.00 0.00 0.00 4.02
2278 3188 4.591321 TCCCTAATGCTTTGAATGGACT 57.409 40.909 0.00 0.00 0.00 3.85
2279 3189 4.272489 TCCCTAATGCTTTGAATGGACTG 58.728 43.478 0.00 0.00 0.00 3.51
2280 3190 3.382546 CCCTAATGCTTTGAATGGACTGG 59.617 47.826 0.00 0.00 0.00 4.00
2281 3191 3.181483 CCTAATGCTTTGAATGGACTGGC 60.181 47.826 0.00 0.00 0.00 4.85
2282 3192 1.927487 ATGCTTTGAATGGACTGGCA 58.073 45.000 0.00 0.00 0.00 4.92
2283 3193 1.250328 TGCTTTGAATGGACTGGCAG 58.750 50.000 14.16 14.16 0.00 4.85
2284 3194 0.108945 GCTTTGAATGGACTGGCAGC 60.109 55.000 15.89 7.42 0.00 5.25
2285 3195 1.250328 CTTTGAATGGACTGGCAGCA 58.750 50.000 15.89 5.77 0.00 4.41
2286 3196 1.822990 CTTTGAATGGACTGGCAGCAT 59.177 47.619 15.89 8.15 0.00 3.79
2287 3197 1.466856 TTGAATGGACTGGCAGCATC 58.533 50.000 15.89 5.40 0.00 3.91
2288 3198 0.622136 TGAATGGACTGGCAGCATCT 59.378 50.000 15.89 0.00 0.00 2.90
2289 3199 1.005097 TGAATGGACTGGCAGCATCTT 59.995 47.619 15.89 3.45 0.00 2.40
2290 3200 2.097825 GAATGGACTGGCAGCATCTTT 58.902 47.619 15.89 8.56 0.00 2.52
2291 3201 2.226962 ATGGACTGGCAGCATCTTTT 57.773 45.000 15.89 0.00 0.00 2.27
2292 3202 1.999648 TGGACTGGCAGCATCTTTTT 58.000 45.000 15.89 0.00 0.00 1.94
2293 3203 1.614903 TGGACTGGCAGCATCTTTTTG 59.385 47.619 15.89 0.00 0.00 2.44
2299 3209 4.202284 ACTGGCAGCATCTTTTTGAACATT 60.202 37.500 15.89 0.00 0.00 2.71
2300 3210 5.010922 ACTGGCAGCATCTTTTTGAACATTA 59.989 36.000 15.89 0.00 0.00 1.90
2320 3230 8.594881 ACATTATGTACTTAGATAAGCACTGC 57.405 34.615 0.00 0.00 36.79 4.40
2341 3251 4.142116 TGCCAGGTCTATTCATTGCAAATG 60.142 41.667 1.71 2.77 0.00 2.32
2355 3265 3.954200 TGCAAATGCTCTGATCTGGTAA 58.046 40.909 6.97 0.00 42.66 2.85
2356 3266 3.943381 TGCAAATGCTCTGATCTGGTAAG 59.057 43.478 6.97 0.00 42.66 2.34
2357 3267 4.194640 GCAAATGCTCTGATCTGGTAAGA 58.805 43.478 0.00 0.00 38.21 2.10
2358 3268 4.820716 GCAAATGCTCTGATCTGGTAAGAT 59.179 41.667 0.00 0.00 41.03 2.40
2359 3269 5.298777 GCAAATGCTCTGATCTGGTAAGATT 59.701 40.000 0.00 0.00 39.59 2.40
2360 3270 6.484643 GCAAATGCTCTGATCTGGTAAGATTA 59.515 38.462 0.00 0.00 39.59 1.75
2361 3271 7.307870 GCAAATGCTCTGATCTGGTAAGATTAG 60.308 40.741 0.00 2.05 44.25 1.73
2362 3272 5.798125 TGCTCTGATCTGGTAAGATTAGG 57.202 43.478 7.43 1.61 43.48 2.69
2363 3273 5.458595 TGCTCTGATCTGGTAAGATTAGGA 58.541 41.667 7.43 0.00 43.48 2.94
2364 3274 5.899547 TGCTCTGATCTGGTAAGATTAGGAA 59.100 40.000 7.43 0.00 43.48 3.36
2365 3275 6.556495 TGCTCTGATCTGGTAAGATTAGGAAT 59.444 38.462 7.43 0.00 43.48 3.01
2366 3276 7.730332 TGCTCTGATCTGGTAAGATTAGGAATA 59.270 37.037 7.43 0.00 43.48 1.75
2367 3277 8.250332 GCTCTGATCTGGTAAGATTAGGAATAG 58.750 40.741 7.43 0.74 43.48 1.73
2368 3278 9.308000 CTCTGATCTGGTAAGATTAGGAATAGT 57.692 37.037 7.43 0.00 43.48 2.12
2369 3279 9.083422 TCTGATCTGGTAAGATTAGGAATAGTG 57.917 37.037 7.43 0.00 43.48 2.74
2370 3280 9.083422 CTGATCTGGTAAGATTAGGAATAGTGA 57.917 37.037 0.00 0.00 43.48 3.41
2371 3281 9.607333 TGATCTGGTAAGATTAGGAATAGTGAT 57.393 33.333 0.00 0.00 43.48 3.06
2372 3282 9.868277 GATCTGGTAAGATTAGGAATAGTGATG 57.132 37.037 0.00 0.00 43.48 3.07
2373 3283 8.783660 TCTGGTAAGATTAGGAATAGTGATGT 57.216 34.615 0.00 0.00 0.00 3.06
2374 3284 8.642432 TCTGGTAAGATTAGGAATAGTGATGTG 58.358 37.037 0.00 0.00 0.00 3.21
2375 3285 7.217200 TGGTAAGATTAGGAATAGTGATGTGC 58.783 38.462 0.00 0.00 0.00 4.57
2376 3286 6.651225 GGTAAGATTAGGAATAGTGATGTGCC 59.349 42.308 0.00 0.00 0.00 5.01
2377 3287 5.894298 AGATTAGGAATAGTGATGTGCCA 57.106 39.130 0.00 0.00 0.00 4.92
2378 3288 6.445451 AGATTAGGAATAGTGATGTGCCAT 57.555 37.500 0.00 0.00 0.00 4.40
2379 3289 6.845908 AGATTAGGAATAGTGATGTGCCATT 58.154 36.000 0.00 0.00 0.00 3.16
2380 3290 7.977818 AGATTAGGAATAGTGATGTGCCATTA 58.022 34.615 0.00 0.00 0.00 1.90
2381 3291 8.609483 AGATTAGGAATAGTGATGTGCCATTAT 58.391 33.333 0.00 0.00 0.00 1.28
2382 3292 9.236006 GATTAGGAATAGTGATGTGCCATTATT 57.764 33.333 0.00 0.00 33.49 1.40
2383 3293 6.889301 AGGAATAGTGATGTGCCATTATTG 57.111 37.500 0.00 0.00 31.77 1.90
2384 3294 6.604171 AGGAATAGTGATGTGCCATTATTGA 58.396 36.000 0.00 0.00 31.77 2.57
2385 3295 7.236529 AGGAATAGTGATGTGCCATTATTGAT 58.763 34.615 0.00 0.00 31.77 2.57
2386 3296 8.385491 AGGAATAGTGATGTGCCATTATTGATA 58.615 33.333 0.00 0.00 31.77 2.15
2387 3297 9.182214 GGAATAGTGATGTGCCATTATTGATAT 57.818 33.333 0.00 0.00 31.77 1.63
2389 3299 6.732531 AGTGATGTGCCATTATTGATATCG 57.267 37.500 0.00 0.00 0.00 2.92
2420 3361 5.790593 TCAACATCACACTACCTACCTTTC 58.209 41.667 0.00 0.00 0.00 2.62
2436 3380 9.591792 ACCTACCTTTCGTTAATAACTTATGAC 57.408 33.333 1.42 0.00 0.00 3.06
2501 3445 1.281867 TGGGGGCAGAGACATTGTAAG 59.718 52.381 0.00 0.00 0.00 2.34
2530 3474 4.319694 GCATTTACTTTGCTTGCCTTTTGG 60.320 41.667 0.00 0.00 38.72 3.28
2548 3494 1.363807 GCCTTTGCCTTGTCGCTTT 59.636 52.632 0.00 0.00 0.00 3.51
2559 3505 4.630069 GCCTTGTCGCTTTTTATAGACTGA 59.370 41.667 0.00 0.00 34.92 3.41
2561 3507 5.220228 CCTTGTCGCTTTTTATAGACTGACG 60.220 44.000 0.00 0.00 34.92 4.35
2794 3823 1.442769 CAGCACAGCAATACGTTCCT 58.557 50.000 0.00 0.00 0.00 3.36
2838 3867 4.695455 CCACAAGAAAACATGACGGTATCT 59.305 41.667 0.00 0.00 0.00 1.98
2842 3871 3.689649 AGAAAACATGACGGTATCTTGGC 59.310 43.478 0.00 0.00 36.91 4.52
2847 3876 3.420214 GACGGTATCTTGGCGGCGA 62.420 63.158 12.98 0.14 0.00 5.54
2866 3895 1.136891 GAACTGCCCTGTGCTTGTTTT 59.863 47.619 0.00 0.00 42.00 2.43
2870 3899 1.069596 CCCTGTGCTTGTTTTGCCC 59.930 57.895 0.00 0.00 0.00 5.36
2871 3900 1.300080 CCTGTGCTTGTTTTGCCCG 60.300 57.895 0.00 0.00 0.00 6.13
2874 3903 1.299850 GTGCTTGTTTTGCCCGGTC 60.300 57.895 0.00 0.00 0.00 4.79
2875 3904 2.338620 GCTTGTTTTGCCCGGTCC 59.661 61.111 0.00 0.00 0.00 4.46
2880 3909 1.969589 GTTTTGCCCGGTCCGTCAT 60.970 57.895 11.06 0.00 0.00 3.06
2889 3918 0.530650 CGGTCCGTCATCAGGAATGG 60.531 60.000 2.08 0.00 39.84 3.16
2893 3922 2.118679 TCCGTCATCAGGAATGGTGAT 58.881 47.619 0.00 0.00 35.94 3.06
2905 3934 2.827800 ATGGTGATGATCCGCACTAG 57.172 50.000 12.88 0.00 35.43 2.57
2906 3935 0.104855 TGGTGATGATCCGCACTAGC 59.895 55.000 12.88 0.00 35.43 3.42
2907 3936 0.390860 GGTGATGATCCGCACTAGCT 59.609 55.000 12.88 0.00 39.10 3.32
2908 3937 1.495878 GTGATGATCCGCACTAGCTG 58.504 55.000 0.00 0.00 39.10 4.24
2909 3938 0.390492 TGATGATCCGCACTAGCTGG 59.610 55.000 0.00 0.00 39.10 4.85
2911 3940 2.280457 GATCCGCACTAGCTGGGC 60.280 66.667 0.85 0.83 42.86 5.36
2916 3948 4.137879 GCACTAGCTGGGCATGAG 57.862 61.111 0.85 0.00 46.29 2.90
2926 3958 3.073503 AGCTGGGCATGAGAAATGCTATA 59.926 43.478 9.92 0.00 44.02 1.31
3019 4051 5.118990 TGGAAAAGAAATATCGAGGAGCTG 58.881 41.667 0.00 0.00 0.00 4.24
3022 4054 3.742433 AGAAATATCGAGGAGCTGTGG 57.258 47.619 0.00 0.00 0.00 4.17
3035 4067 1.669115 CTGTGGTCAACCTCTGCCG 60.669 63.158 0.10 0.00 36.82 5.69
3064 4096 3.023119 GCCATGTCATGTTGGGTATTCA 58.977 45.455 11.84 0.00 33.40 2.57
3081 4113 0.888619 TCAGACGATATGATCCCGGC 59.111 55.000 0.00 0.00 0.00 6.13
3094 4126 4.234019 CCGGCGAAATGGGAATGA 57.766 55.556 9.30 0.00 0.00 2.57
3103 4135 3.244976 GAAATGGGAATGAGTTTGTGCG 58.755 45.455 0.00 0.00 0.00 5.34
3154 4233 3.407424 TCACTCTTCATTCTGTGGTGG 57.593 47.619 0.00 0.00 0.00 4.61
3156 4235 1.421268 ACTCTTCATTCTGTGGTGGCA 59.579 47.619 0.00 0.00 0.00 4.92
3167 4246 1.271871 TGTGGTGGCAAGAAATCGGAT 60.272 47.619 0.00 0.00 0.00 4.18
3200 4279 3.536956 TGGAGAAAGTCGTGTTTCTGT 57.463 42.857 16.17 0.00 45.00 3.41
3222 4301 4.554586 GTGTATTGTTGCATGTGATTCGTG 59.445 41.667 0.00 0.00 36.25 4.35
3233 4312 5.404968 GCATGTGATTCGTGGAAAATTCAAA 59.595 36.000 0.00 0.00 33.96 2.69
3241 4320 4.912766 TCGTGGAAAATTCAAATTACGTGC 59.087 37.500 0.00 0.00 0.00 5.34
3275 4363 3.690475 TTTTTCTACTTCCTCCGTCCC 57.310 47.619 0.00 0.00 0.00 4.46
3278 4366 0.406750 TCTACTTCCTCCGTCCCACA 59.593 55.000 0.00 0.00 0.00 4.17
3279 4367 1.203087 TCTACTTCCTCCGTCCCACAA 60.203 52.381 0.00 0.00 0.00 3.33
3280 4368 1.831736 CTACTTCCTCCGTCCCACAAT 59.168 52.381 0.00 0.00 0.00 2.71
3281 4369 1.946984 ACTTCCTCCGTCCCACAATA 58.053 50.000 0.00 0.00 0.00 1.90
3282 4370 2.478292 ACTTCCTCCGTCCCACAATAT 58.522 47.619 0.00 0.00 0.00 1.28
3283 4371 3.649843 ACTTCCTCCGTCCCACAATATA 58.350 45.455 0.00 0.00 0.00 0.86
3284 4372 4.035112 ACTTCCTCCGTCCCACAATATAA 58.965 43.478 0.00 0.00 0.00 0.98
3285 4373 4.101119 ACTTCCTCCGTCCCACAATATAAG 59.899 45.833 0.00 0.00 0.00 1.73
3286 4374 3.918566 TCCTCCGTCCCACAATATAAGA 58.081 45.455 0.00 0.00 0.00 2.10
3287 4375 4.489737 TCCTCCGTCCCACAATATAAGAT 58.510 43.478 0.00 0.00 0.00 2.40
3288 4376 4.527038 TCCTCCGTCCCACAATATAAGATC 59.473 45.833 0.00 0.00 0.00 2.75
3289 4377 4.322801 CCTCCGTCCCACAATATAAGATCC 60.323 50.000 0.00 0.00 0.00 3.36
3290 4378 3.581332 TCCGTCCCACAATATAAGATCCC 59.419 47.826 0.00 0.00 0.00 3.85
3291 4379 3.583086 CCGTCCCACAATATAAGATCCCT 59.417 47.826 0.00 0.00 0.00 4.20
3292 4380 4.041691 CCGTCCCACAATATAAGATCCCTT 59.958 45.833 0.00 0.00 36.43 3.95
3293 4381 5.456186 CCGTCCCACAATATAAGATCCCTTT 60.456 44.000 0.00 0.00 33.94 3.11
3294 4382 5.470098 CGTCCCACAATATAAGATCCCTTTG 59.530 44.000 0.00 0.00 33.94 2.77
3295 4383 5.241728 GTCCCACAATATAAGATCCCTTTGC 59.758 44.000 0.00 0.00 33.94 3.68
3296 4384 5.103728 TCCCACAATATAAGATCCCTTTGCA 60.104 40.000 0.00 0.00 33.94 4.08
3333 4421 8.568676 TTGAAAAACGATCTTATATTGTGGGA 57.431 30.769 0.00 0.00 0.00 4.37
3341 4429 2.779429 TATATTGTGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
3348 4436 0.686441 TGGGACGGAGGGAGTACATG 60.686 60.000 0.00 0.00 0.00 3.21
3349 4437 0.396695 GGGACGGAGGGAGTACATGA 60.397 60.000 0.00 0.00 0.00 3.07
3354 4442 4.100498 GGACGGAGGGAGTACATGATAAAA 59.900 45.833 0.00 0.00 0.00 1.52
3419 6625 1.672356 CAAGGTGAGGGAACGGCTG 60.672 63.158 0.00 0.00 0.00 4.85
3430 6636 1.433534 GAACGGCTGGAACTTGAGAG 58.566 55.000 0.00 0.00 0.00 3.20
3431 6637 1.000955 GAACGGCTGGAACTTGAGAGA 59.999 52.381 0.00 0.00 0.00 3.10
3460 6666 3.817647 GTGACCATTGAAGCAAAGAGAGT 59.182 43.478 0.00 0.00 0.00 3.24
3473 6679 4.376819 GCAAAGAGAGTGACAATCAAGACG 60.377 45.833 5.59 0.00 0.00 4.18
3474 6680 4.855715 AAGAGAGTGACAATCAAGACGA 57.144 40.909 5.59 0.00 0.00 4.20
3519 6725 2.739943 TCAAGGAGTCGAGGATCATGT 58.260 47.619 0.00 0.00 33.17 3.21
3523 6729 1.202580 GGAGTCGAGGATCATGTTGGG 60.203 57.143 0.00 0.00 33.17 4.12
3544 6750 2.892374 CAACACTAGCATCATGGACGA 58.108 47.619 0.00 0.00 0.00 4.20
3590 6817 4.914312 AATGCAAAAAGACATCAATGCG 57.086 36.364 0.00 0.00 36.62 4.73
3593 6820 2.159934 GCAAAAAGACATCAATGCGCAC 60.160 45.455 14.90 0.00 0.00 5.34
3595 6822 1.246649 AAAGACATCAATGCGCACCA 58.753 45.000 14.90 0.00 0.00 4.17
3598 6825 0.734309 GACATCAATGCGCACCATGA 59.266 50.000 24.45 22.49 33.49 3.07
3641 6868 2.704725 ACCATGTGTTGAATTGTCGC 57.295 45.000 0.00 0.00 0.00 5.19
3655 6882 0.247894 TGTCGCGTTGTTTGACTTGC 60.248 50.000 5.77 0.00 33.81 4.01
3659 6886 1.530852 CGCGTTGTTTGACTTGCTGAA 60.531 47.619 0.00 0.00 0.00 3.02
3698 6927 8.851960 TTACGTTGATATTCCATATCTATCGC 57.148 34.615 0.00 0.00 41.69 4.58
3715 6944 3.678915 TCGCTGAATGTGTGCAATATG 57.321 42.857 0.00 0.00 0.00 1.78
3721 6950 6.358822 CGCTGAATGTGTGCAATATGATAAAG 59.641 38.462 0.00 0.00 0.00 1.85
3722 6951 7.420002 GCTGAATGTGTGCAATATGATAAAGA 58.580 34.615 0.00 0.00 0.00 2.52
3742 6971 2.096220 TAGTGAAAAATACGCCGCCA 57.904 45.000 0.00 0.00 0.00 5.69
3745 6974 1.068816 GTGAAAAATACGCCGCCAAGT 60.069 47.619 0.00 0.00 0.00 3.16
3750 6979 2.911332 AATACGCCGCCAAGTACCCG 62.911 60.000 0.00 0.00 0.00 5.28
3761 6990 2.506444 CAAGTACCCGGGTTTTAGCAA 58.494 47.619 35.42 9.14 0.00 3.91
3778 7007 2.295070 AGCAAACAAACCCGTGTTATCC 59.705 45.455 0.00 0.00 40.86 2.59
3780 7009 3.855524 GCAAACAAACCCGTGTTATCCAG 60.856 47.826 0.00 0.00 40.86 3.86
3787 7016 3.760693 CGTGTTATCCAGGGACAGG 57.239 57.895 0.00 0.00 35.77 4.00
3788 7017 0.462047 CGTGTTATCCAGGGACAGGC 60.462 60.000 0.00 0.00 33.77 4.85
3789 7018 0.912486 GTGTTATCCAGGGACAGGCT 59.088 55.000 0.00 0.00 33.77 4.58
3796 7025 2.042843 AGGGACAGGCTAGGGACG 60.043 66.667 0.00 0.00 0.00 4.79
3798 7027 2.424733 GGGACAGGCTAGGGACGAC 61.425 68.421 0.00 0.00 0.00 4.34
3822 7051 2.439409 TGGTGAATGCTGTTGGAGATG 58.561 47.619 0.00 0.00 0.00 2.90
3827 7056 2.414994 ATGCTGTTGGAGATGACCTG 57.585 50.000 0.00 0.00 0.00 4.00
3828 7057 1.059098 TGCTGTTGGAGATGACCTGT 58.941 50.000 0.00 0.00 0.00 4.00
3829 7058 1.421268 TGCTGTTGGAGATGACCTGTT 59.579 47.619 0.00 0.00 0.00 3.16
3830 7059 2.637382 TGCTGTTGGAGATGACCTGTTA 59.363 45.455 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 4.436998 GCTAGAGCACACGCCCGT 62.437 66.667 0.00 0.00 41.59 5.28
22 23 3.605749 TTGGCTAGAGCACACGCCC 62.606 63.158 3.54 0.00 44.36 6.13
23 24 2.047274 TTGGCTAGAGCACACGCC 60.047 61.111 3.54 6.74 44.36 5.68
24 25 2.391389 GGTTGGCTAGAGCACACGC 61.391 63.158 3.54 0.00 44.36 5.34
25 26 2.094659 CGGTTGGCTAGAGCACACG 61.095 63.158 3.54 0.00 44.36 4.49
26 27 0.737715 CTCGGTTGGCTAGAGCACAC 60.738 60.000 3.54 0.00 44.36 3.82
27 28 1.591703 CTCGGTTGGCTAGAGCACA 59.408 57.895 3.54 0.00 44.36 4.57
28 29 4.504132 CTCGGTTGGCTAGAGCAC 57.496 61.111 3.54 0.00 44.36 4.40
31 32 0.459237 CAGTGCTCGGTTGGCTAGAG 60.459 60.000 0.00 0.00 35.28 2.43
32 33 1.591703 CAGTGCTCGGTTGGCTAGA 59.408 57.895 0.00 0.00 0.00 2.43
33 34 2.103042 GCAGTGCTCGGTTGGCTAG 61.103 63.158 8.18 0.00 0.00 3.42
34 35 2.047274 GCAGTGCTCGGTTGGCTA 60.047 61.111 8.18 0.00 0.00 3.93
35 36 3.890936 GAGCAGTGCTCGGTTGGCT 62.891 63.158 28.32 0.00 45.85 4.75
36 37 3.426568 GAGCAGTGCTCGGTTGGC 61.427 66.667 28.32 5.65 45.85 4.52
44 45 0.322975 AATGAGAACCGAGCAGTGCT 59.677 50.000 19.86 19.86 43.88 4.40
45 46 0.723981 GAATGAGAACCGAGCAGTGC 59.276 55.000 7.13 7.13 0.00 4.40
46 47 2.084610 TGAATGAGAACCGAGCAGTG 57.915 50.000 0.00 0.00 0.00 3.66
47 48 2.037772 ACTTGAATGAGAACCGAGCAGT 59.962 45.455 0.00 0.00 0.00 4.40
48 49 2.670414 GACTTGAATGAGAACCGAGCAG 59.330 50.000 0.00 0.00 0.00 4.24
49 50 2.612972 GGACTTGAATGAGAACCGAGCA 60.613 50.000 0.00 0.00 0.00 4.26
50 51 2.003301 GGACTTGAATGAGAACCGAGC 58.997 52.381 0.00 0.00 0.00 5.03
51 52 3.319137 TGGACTTGAATGAGAACCGAG 57.681 47.619 0.00 0.00 0.00 4.63
52 53 3.981071 ATGGACTTGAATGAGAACCGA 57.019 42.857 0.00 0.00 0.00 4.69
53 54 5.376854 AAAATGGACTTGAATGAGAACCG 57.623 39.130 0.00 0.00 0.00 4.44
83 84 3.151554 ACTGCATGCTTCAACTCATTGA 58.848 40.909 20.33 0.00 43.28 2.57
84 85 3.570926 ACTGCATGCTTCAACTCATTG 57.429 42.857 20.33 0.00 37.14 2.82
85 86 3.305813 CCAACTGCATGCTTCAACTCATT 60.306 43.478 20.33 0.00 0.00 2.57
86 87 2.230508 CCAACTGCATGCTTCAACTCAT 59.769 45.455 20.33 0.00 0.00 2.90
87 88 1.610038 CCAACTGCATGCTTCAACTCA 59.390 47.619 20.33 0.00 0.00 3.41
88 89 1.668047 GCCAACTGCATGCTTCAACTC 60.668 52.381 20.33 0.00 40.77 3.01
89 90 0.316204 GCCAACTGCATGCTTCAACT 59.684 50.000 20.33 0.00 40.77 3.16
90 91 0.316204 AGCCAACTGCATGCTTCAAC 59.684 50.000 20.33 4.21 44.83 3.18
91 92 0.315886 CAGCCAACTGCATGCTTCAA 59.684 50.000 20.33 0.00 44.83 2.69
92 93 1.961378 CAGCCAACTGCATGCTTCA 59.039 52.632 20.33 0.00 44.83 3.02
93 94 4.883026 CAGCCAACTGCATGCTTC 57.117 55.556 20.33 1.55 44.83 3.86
102 103 4.381932 GCAACCATTAATTAGCAGCCAACT 60.382 41.667 0.00 0.00 0.00 3.16
103 104 3.865164 GCAACCATTAATTAGCAGCCAAC 59.135 43.478 0.00 0.00 0.00 3.77
104 105 3.768757 AGCAACCATTAATTAGCAGCCAA 59.231 39.130 0.00 0.00 0.00 4.52
105 106 3.364549 AGCAACCATTAATTAGCAGCCA 58.635 40.909 0.00 0.00 0.00 4.75
106 107 4.391405 AAGCAACCATTAATTAGCAGCC 57.609 40.909 0.00 0.00 0.00 4.85
107 108 5.922544 CCATAAGCAACCATTAATTAGCAGC 59.077 40.000 0.00 0.00 0.00 5.25
108 109 7.042797 ACCATAAGCAACCATTAATTAGCAG 57.957 36.000 0.00 0.00 0.00 4.24
109 110 7.416964 AACCATAAGCAACCATTAATTAGCA 57.583 32.000 0.00 0.00 0.00 3.49
110 111 9.626045 GATAACCATAAGCAACCATTAATTAGC 57.374 33.333 0.00 0.00 0.00 3.09
111 112 9.825972 CGATAACCATAAGCAACCATTAATTAG 57.174 33.333 0.00 0.00 0.00 1.73
112 113 9.562408 TCGATAACCATAAGCAACCATTAATTA 57.438 29.630 0.00 0.00 0.00 1.40
113 114 8.458573 TCGATAACCATAAGCAACCATTAATT 57.541 30.769 0.00 0.00 0.00 1.40
114 115 8.458573 TTCGATAACCATAAGCAACCATTAAT 57.541 30.769 0.00 0.00 0.00 1.40
115 116 7.867305 TTCGATAACCATAAGCAACCATTAA 57.133 32.000 0.00 0.00 0.00 1.40
116 117 7.867305 TTTCGATAACCATAAGCAACCATTA 57.133 32.000 0.00 0.00 0.00 1.90
117 118 6.767524 TTTCGATAACCATAAGCAACCATT 57.232 33.333 0.00 0.00 0.00 3.16
118 119 6.767524 TTTTCGATAACCATAAGCAACCAT 57.232 33.333 0.00 0.00 0.00 3.55
119 120 6.576662 TTTTTCGATAACCATAAGCAACCA 57.423 33.333 0.00 0.00 0.00 3.67
120 121 6.695713 GGATTTTTCGATAACCATAAGCAACC 59.304 38.462 0.00 0.00 0.00 3.77
121 122 7.480810 AGGATTTTTCGATAACCATAAGCAAC 58.519 34.615 0.00 0.00 0.00 4.17
122 123 7.639113 AGGATTTTTCGATAACCATAAGCAA 57.361 32.000 0.00 0.00 0.00 3.91
123 124 7.479980 CAAGGATTTTTCGATAACCATAAGCA 58.520 34.615 0.00 0.00 0.00 3.91
124 125 6.417930 GCAAGGATTTTTCGATAACCATAAGC 59.582 38.462 0.00 0.00 0.00 3.09
125 126 7.479980 TGCAAGGATTTTTCGATAACCATAAG 58.520 34.615 0.00 0.00 0.00 1.73
126 127 7.397892 TGCAAGGATTTTTCGATAACCATAA 57.602 32.000 0.00 0.00 0.00 1.90
127 128 7.026631 CTGCAAGGATTTTTCGATAACCATA 57.973 36.000 0.00 0.00 0.00 2.74
128 129 5.894807 CTGCAAGGATTTTTCGATAACCAT 58.105 37.500 0.00 0.00 0.00 3.55
129 130 5.309323 CTGCAAGGATTTTTCGATAACCA 57.691 39.130 0.00 0.00 0.00 3.67
145 146 1.338674 TGGTCGTTATGTCCCTGCAAG 60.339 52.381 0.00 0.00 0.00 4.01
200 201 1.672737 GCCACTCATGTCACGATGTCA 60.673 52.381 0.00 0.00 0.00 3.58
212 213 2.165167 CACAGAAACCATGCCACTCAT 58.835 47.619 0.00 0.00 35.31 2.90
217 218 2.291209 ATGTCACAGAAACCATGCCA 57.709 45.000 0.00 0.00 0.00 4.92
219 220 4.241590 TGAAATGTCACAGAAACCATGC 57.758 40.909 0.00 0.00 0.00 4.06
254 255 2.571653 TGTACATGTCCTTCCCCTCTTG 59.428 50.000 0.00 0.00 0.00 3.02
324 327 6.349300 TCATCTCTTAACCTCCTTGCATTAC 58.651 40.000 0.00 0.00 0.00 1.89
333 337 2.969262 CTCCCCTCATCTCTTAACCTCC 59.031 54.545 0.00 0.00 0.00 4.30
345 349 1.366435 AGACTACAACCCTCCCCTCAT 59.634 52.381 0.00 0.00 0.00 2.90
382 386 1.502231 GATGCAGTTCATATCGCGGT 58.498 50.000 6.13 0.00 35.05 5.68
383 387 0.792640 GGATGCAGTTCATATCGCGG 59.207 55.000 6.13 0.00 35.05 6.46
484 491 1.741770 GACACGCCGCTGGAGAAAT 60.742 57.895 5.46 0.00 0.00 2.17
520 533 4.328667 GAACGTTATTTATGCCACGTGAC 58.671 43.478 19.30 5.85 44.81 3.67
524 537 3.644805 ACGAACGTTATTTATGCCACG 57.355 42.857 0.00 0.00 38.62 4.94
525 538 5.148568 ACAAACGAACGTTATTTATGCCAC 58.851 37.500 12.77 0.00 37.35 5.01
526 539 5.359716 ACAAACGAACGTTATTTATGCCA 57.640 34.783 12.77 0.00 37.35 4.92
527 540 5.852229 TGAACAAACGAACGTTATTTATGCC 59.148 36.000 12.77 4.56 37.35 4.40
528 541 6.898451 TGAACAAACGAACGTTATTTATGC 57.102 33.333 12.77 0.00 37.35 3.14
530 543 8.508875 AGGAATGAACAAACGAACGTTATTTAT 58.491 29.630 12.77 9.72 37.35 1.40
533 546 6.017770 TGAGGAATGAACAAACGAACGTTATT 60.018 34.615 12.77 10.33 37.35 1.40
534 547 5.467399 TGAGGAATGAACAAACGAACGTTAT 59.533 36.000 12.77 2.43 37.35 1.89
535 548 4.809958 TGAGGAATGAACAAACGAACGTTA 59.190 37.500 12.77 0.00 37.35 3.18
539 552 4.475944 CCATGAGGAATGAACAAACGAAC 58.524 43.478 0.00 0.00 38.72 3.95
540 553 3.057596 GCCATGAGGAATGAACAAACGAA 60.058 43.478 0.00 0.00 38.72 3.85
542 555 2.489329 AGCCATGAGGAATGAACAAACG 59.511 45.455 0.00 0.00 38.72 3.60
543 556 5.126061 ACATAGCCATGAGGAATGAACAAAC 59.874 40.000 0.00 0.00 38.72 2.93
545 558 4.858850 ACATAGCCATGAGGAATGAACAA 58.141 39.130 0.00 0.00 38.72 2.83
546 559 4.508551 ACATAGCCATGAGGAATGAACA 57.491 40.909 0.00 0.00 38.72 3.18
548 561 4.646040 CCAAACATAGCCATGAGGAATGAA 59.354 41.667 0.00 0.00 38.72 2.57
551 564 4.524802 TCCAAACATAGCCATGAGGAAT 57.475 40.909 0.00 0.00 36.89 3.01
555 583 3.549423 CGCAATCCAAACATAGCCATGAG 60.549 47.826 0.00 0.00 35.96 2.90
562 590 4.433186 TTTGGTCGCAATCCAAACATAG 57.567 40.909 11.30 0.00 45.99 2.23
578 606 4.093011 TGGCTAATAAGGTGCATTTTGGT 58.907 39.130 0.00 0.00 0.00 3.67
637 665 3.064820 TCTCAAAAAGCAACTGTCCGAAC 59.935 43.478 0.00 0.00 0.00 3.95
640 668 3.691049 TTCTCAAAAAGCAACTGTCCG 57.309 42.857 0.00 0.00 0.00 4.79
663 783 8.801299 TGTTTATTTGATGAGTAAATTCAGGCA 58.199 29.630 0.00 0.00 0.00 4.75
675 795 9.558648 TTCGATGTGATTTGTTTATTTGATGAG 57.441 29.630 0.00 0.00 0.00 2.90
717 840 1.451449 TGGGCCCAAGAAAACCTAGA 58.549 50.000 26.33 0.00 0.00 2.43
733 856 1.643310 TGCCTTTCCTGGAAATTGGG 58.357 50.000 21.37 19.09 30.85 4.12
773 944 6.974622 CAGTGAACAACTTGCTTTCAGTTAAT 59.025 34.615 1.47 0.00 36.83 1.40
800 971 2.096594 GCGCGCTTTAGCACTCAC 59.903 61.111 26.67 0.00 42.21 3.51
867 1607 3.071892 AGAGGAGAGGATAGATTCGTCGT 59.928 47.826 0.00 0.00 42.73 4.34
890 1630 0.687354 TCCAAAGAGAGAGTGTGGGC 59.313 55.000 0.00 0.00 0.00 5.36
905 1657 2.821437 AGAAGATTCTCCCTCGTCCAA 58.179 47.619 0.00 0.00 29.94 3.53
925 1677 2.244252 GGGAGGAGTGGGACTAGTAGAA 59.756 54.545 3.59 0.00 0.00 2.10
926 1678 1.851653 GGGAGGAGTGGGACTAGTAGA 59.148 57.143 3.59 0.00 0.00 2.59
927 1679 1.854280 AGGGAGGAGTGGGACTAGTAG 59.146 57.143 0.00 0.00 0.00 2.57
1026 1794 4.135153 CGGAGGTGCCTGTCGAGG 62.135 72.222 0.00 0.00 43.19 4.63
1162 1957 0.178900 AAAGGAGAGGGAGAACCGGT 60.179 55.000 0.00 0.00 46.96 5.28
1180 1975 8.472007 AACACATCAATTTTAAGGTACAGGAA 57.528 30.769 0.00 0.00 0.00 3.36
1181 1976 8.356657 CAAACACATCAATTTTAAGGTACAGGA 58.643 33.333 0.00 0.00 0.00 3.86
1182 1977 8.141268 ACAAACACATCAATTTTAAGGTACAGG 58.859 33.333 0.00 0.00 0.00 4.00
1183 1978 8.967218 CACAAACACATCAATTTTAAGGTACAG 58.033 33.333 0.00 0.00 0.00 2.74
1184 1979 7.436673 GCACAAACACATCAATTTTAAGGTACA 59.563 33.333 0.00 0.00 0.00 2.90
1187 1982 5.461737 CGCACAAACACATCAATTTTAAGGT 59.538 36.000 0.00 0.00 0.00 3.50
1460 2257 1.823610 GAGGTGAGGTGTAGGTGTACC 59.176 57.143 0.00 0.00 37.23 3.34
1461 2258 1.823610 GGAGGTGAGGTGTAGGTGTAC 59.176 57.143 0.00 0.00 0.00 2.90
1463 2260 0.487772 AGGAGGTGAGGTGTAGGTGT 59.512 55.000 0.00 0.00 0.00 4.16
1464 2261 1.550976 GAAGGAGGTGAGGTGTAGGTG 59.449 57.143 0.00 0.00 0.00 4.00
1484 2281 7.369607 TGATGAACTGGTTATCACAACAAATG 58.630 34.615 0.00 0.00 0.00 2.32
1486 2283 6.951062 TGATGAACTGGTTATCACAACAAA 57.049 33.333 0.00 0.00 0.00 2.83
1488 2285 5.351189 CGATGATGAACTGGTTATCACAACA 59.649 40.000 1.94 0.00 34.04 3.33
1489 2286 5.351465 ACGATGATGAACTGGTTATCACAAC 59.649 40.000 1.94 0.00 34.04 3.32
1491 2288 5.084818 ACGATGATGAACTGGTTATCACA 57.915 39.130 1.94 0.00 34.04 3.58
1492 2289 6.757010 ACTTACGATGATGAACTGGTTATCAC 59.243 38.462 1.94 0.00 34.04 3.06
1494 2291 7.772332 AACTTACGATGATGAACTGGTTATC 57.228 36.000 0.00 0.00 0.00 1.75
1495 2292 8.475639 ACTAACTTACGATGATGAACTGGTTAT 58.524 33.333 0.00 0.00 0.00 1.89
1497 2294 6.698380 ACTAACTTACGATGATGAACTGGTT 58.302 36.000 0.00 0.00 0.00 3.67
1498 2295 6.282199 ACTAACTTACGATGATGAACTGGT 57.718 37.500 0.00 0.00 0.00 4.00
1499 2296 6.918569 CCTACTAACTTACGATGATGAACTGG 59.081 42.308 0.00 0.00 0.00 4.00
1500 2297 7.481642 ACCTACTAACTTACGATGATGAACTG 58.518 38.462 0.00 0.00 0.00 3.16
1501 2298 7.642082 ACCTACTAACTTACGATGATGAACT 57.358 36.000 0.00 0.00 0.00 3.01
1505 2302 6.273825 AGCAACCTACTAACTTACGATGATG 58.726 40.000 0.00 0.00 0.00 3.07
1510 2307 5.005740 TCAGAGCAACCTACTAACTTACGA 58.994 41.667 0.00 0.00 0.00 3.43
1511 2308 5.306532 TCAGAGCAACCTACTAACTTACG 57.693 43.478 0.00 0.00 0.00 3.18
1512 2309 6.097129 AGGATCAGAGCAACCTACTAACTTAC 59.903 42.308 0.00 0.00 0.00 2.34
1517 2328 4.610333 TGAGGATCAGAGCAACCTACTAA 58.390 43.478 0.00 0.00 42.56 2.24
1544 2355 4.277174 ACACACACAGACAAACAAACAGAA 59.723 37.500 0.00 0.00 0.00 3.02
1546 2357 3.913763 CACACACACAGACAAACAAACAG 59.086 43.478 0.00 0.00 0.00 3.16
1549 2360 2.294512 TGCACACACACAGACAAACAAA 59.705 40.909 0.00 0.00 0.00 2.83
1552 2363 2.849880 ATGCACACACACAGACAAAC 57.150 45.000 0.00 0.00 0.00 2.93
1553 2364 3.243035 GCTTATGCACACACACAGACAAA 60.243 43.478 0.00 0.00 39.41 2.83
1554 2365 2.290367 GCTTATGCACACACACAGACAA 59.710 45.455 0.00 0.00 39.41 3.18
1555 2366 1.872952 GCTTATGCACACACACAGACA 59.127 47.619 0.00 0.00 39.41 3.41
1556 2367 1.872952 TGCTTATGCACACACACAGAC 59.127 47.619 0.00 0.00 45.31 3.51
1557 2368 2.145536 CTGCTTATGCACACACACAGA 58.854 47.619 0.00 0.00 45.31 3.41
1558 2369 1.198408 CCTGCTTATGCACACACACAG 59.802 52.381 0.00 0.00 45.31 3.66
1559 2370 1.237533 CCTGCTTATGCACACACACA 58.762 50.000 0.00 0.00 45.31 3.72
1560 2371 0.109597 GCCTGCTTATGCACACACAC 60.110 55.000 0.00 0.00 45.31 3.82
1561 2372 1.576451 CGCCTGCTTATGCACACACA 61.576 55.000 0.00 0.00 45.31 3.72
1562 2373 1.135315 CGCCTGCTTATGCACACAC 59.865 57.895 0.00 0.00 45.31 3.82
1563 2374 0.392863 ATCGCCTGCTTATGCACACA 60.393 50.000 0.00 0.00 45.31 3.72
1564 2375 0.028505 CATCGCCTGCTTATGCACAC 59.971 55.000 0.00 0.00 45.31 3.82
1565 2376 0.392863 ACATCGCCTGCTTATGCACA 60.393 50.000 0.00 0.00 45.31 4.57
1566 2377 0.028505 CACATCGCCTGCTTATGCAC 59.971 55.000 0.00 0.00 45.31 4.57
1568 2379 0.734889 AACACATCGCCTGCTTATGC 59.265 50.000 0.00 0.00 40.20 3.14
1569 2380 2.789208 CAAACACATCGCCTGCTTATG 58.211 47.619 0.00 1.26 0.00 1.90
1570 2381 1.133025 GCAAACACATCGCCTGCTTAT 59.867 47.619 0.00 0.00 0.00 1.73
1571 2382 0.521291 GCAAACACATCGCCTGCTTA 59.479 50.000 0.00 0.00 0.00 3.09
1572 2383 1.286880 GCAAACACATCGCCTGCTT 59.713 52.632 0.00 0.00 0.00 3.91
1573 2384 2.629656 GGCAAACACATCGCCTGCT 61.630 57.895 0.00 0.00 42.78 4.24
1648 2459 1.195442 TGGTCAAGATGTACCGGGCA 61.195 55.000 6.32 4.64 38.70 5.36
1787 2606 1.852157 ATCAGCACGGGACAATGGGT 61.852 55.000 0.00 0.00 0.00 4.51
1789 2608 0.107508 AGATCAGCACGGGACAATGG 60.108 55.000 0.00 0.00 0.00 3.16
1800 2619 2.886523 CAGGTTTTGGAACAGATCAGCA 59.113 45.455 0.00 0.00 42.39 4.41
1831 2655 2.175878 TCTTGAACTTCTCCAGCTGC 57.824 50.000 8.66 0.00 0.00 5.25
1891 2715 0.682209 CCATTGGAAGACAGGGCTGG 60.682 60.000 0.00 0.00 34.19 4.85
1918 2742 4.399483 GGTACTGGACCTAGGGATATCA 57.601 50.000 14.81 2.91 45.89 2.15
1960 2784 2.293955 GGGGTAGTAGAGATCTTCGCAC 59.706 54.545 0.00 0.00 0.00 5.34
2019 2843 8.967918 AGTGTTGTGAGTGCTTATCTAAGTATA 58.032 33.333 0.00 0.00 35.75 1.47
2020 2844 7.761704 CAGTGTTGTGAGTGCTTATCTAAGTAT 59.238 37.037 0.00 0.00 35.75 2.12
2054 2878 6.183347 GGGCTGCATATTTCAGGTTATAGAT 58.817 40.000 0.50 0.00 32.41 1.98
2055 2879 5.514834 GGGGCTGCATATTTCAGGTTATAGA 60.515 44.000 0.50 0.00 32.41 1.98
2056 2880 4.702131 GGGGCTGCATATTTCAGGTTATAG 59.298 45.833 0.50 0.00 32.41 1.31
2057 2881 4.353788 AGGGGCTGCATATTTCAGGTTATA 59.646 41.667 0.50 0.00 32.41 0.98
2059 2883 2.513738 AGGGGCTGCATATTTCAGGTTA 59.486 45.455 0.50 0.00 32.41 2.85
2060 2884 1.288932 AGGGGCTGCATATTTCAGGTT 59.711 47.619 0.50 0.00 32.41 3.50
2061 2885 0.929244 AGGGGCTGCATATTTCAGGT 59.071 50.000 0.50 0.00 32.41 4.00
2063 2887 2.158711 TCAGAGGGGCTGCATATTTCAG 60.159 50.000 0.50 0.00 44.52 3.02
2066 2890 3.139770 AGATTCAGAGGGGCTGCATATTT 59.860 43.478 0.50 0.00 44.52 1.40
2067 2891 2.715336 AGATTCAGAGGGGCTGCATATT 59.285 45.455 0.50 0.00 44.52 1.28
2068 2892 2.040012 CAGATTCAGAGGGGCTGCATAT 59.960 50.000 0.50 0.00 44.52 1.78
2069 2893 1.419012 CAGATTCAGAGGGGCTGCATA 59.581 52.381 0.50 0.00 44.52 3.14
2070 2894 0.183014 CAGATTCAGAGGGGCTGCAT 59.817 55.000 0.50 0.00 44.52 3.96
2071 2895 1.605992 CAGATTCAGAGGGGCTGCA 59.394 57.895 0.50 0.00 44.52 4.41
2072 2896 1.153005 CCAGATTCAGAGGGGCTGC 60.153 63.158 0.00 0.00 44.52 5.25
2073 2897 1.500474 TACCAGATTCAGAGGGGCTG 58.500 55.000 0.00 0.00 46.31 4.85
2074 2898 2.122768 CTTACCAGATTCAGAGGGGCT 58.877 52.381 0.00 0.00 0.00 5.19
2075 2899 2.119495 TCTTACCAGATTCAGAGGGGC 58.881 52.381 0.00 0.00 0.00 5.80
2076 2900 6.270927 TCATATTCTTACCAGATTCAGAGGGG 59.729 42.308 0.00 0.00 0.00 4.79
2077 2901 7.308450 TCATATTCTTACCAGATTCAGAGGG 57.692 40.000 0.00 0.00 0.00 4.30
2078 2902 9.434420 GATTCATATTCTTACCAGATTCAGAGG 57.566 37.037 0.00 0.00 0.00 3.69
2079 2903 9.993454 TGATTCATATTCTTACCAGATTCAGAG 57.007 33.333 0.00 0.00 0.00 3.35
2104 2928 8.167985 CACCGGAAAAATAGTTGCAAAATTATG 58.832 33.333 9.46 0.00 0.00 1.90
2105 2929 7.875554 ACACCGGAAAAATAGTTGCAAAATTAT 59.124 29.630 9.46 0.00 0.00 1.28
2107 2931 6.018343 CACACCGGAAAAATAGTTGCAAAATT 60.018 34.615 9.46 1.13 0.00 1.82
2110 2934 4.142138 ACACACCGGAAAAATAGTTGCAAA 60.142 37.500 9.46 0.00 0.00 3.68
2112 2936 2.952978 ACACACCGGAAAAATAGTTGCA 59.047 40.909 9.46 0.00 0.00 4.08
2113 2937 3.561503 GACACACCGGAAAAATAGTTGC 58.438 45.455 9.46 0.00 0.00 4.17
2114 2938 3.818773 AGGACACACCGGAAAAATAGTTG 59.181 43.478 9.46 0.00 44.74 3.16
2115 2939 4.094830 AGGACACACCGGAAAAATAGTT 57.905 40.909 9.46 0.00 44.74 2.24
2116 2940 3.782656 AGGACACACCGGAAAAATAGT 57.217 42.857 9.46 0.00 44.74 2.12
2117 2941 5.009210 TGAAAAGGACACACCGGAAAAATAG 59.991 40.000 9.46 0.00 44.74 1.73
2118 2942 4.888239 TGAAAAGGACACACCGGAAAAATA 59.112 37.500 9.46 0.00 44.74 1.40
2119 2943 3.702045 TGAAAAGGACACACCGGAAAAAT 59.298 39.130 9.46 0.00 44.74 1.82
2122 2946 2.421751 TGAAAAGGACACACCGGAAA 57.578 45.000 9.46 0.00 44.74 3.13
2125 2949 1.675552 AGTTGAAAAGGACACACCGG 58.324 50.000 0.00 0.00 44.74 5.28
2127 2951 4.610945 CATGAAGTTGAAAAGGACACACC 58.389 43.478 0.00 0.00 39.35 4.16
2130 2954 3.068024 TGGCATGAAGTTGAAAAGGACAC 59.932 43.478 0.00 0.00 0.00 3.67
2131 2955 3.068024 GTGGCATGAAGTTGAAAAGGACA 59.932 43.478 0.00 0.00 0.00 4.02
2132 2956 3.068024 TGTGGCATGAAGTTGAAAAGGAC 59.932 43.478 0.00 0.00 0.00 3.85
2142 2966 2.233271 CTGAAAGGTGTGGCATGAAGT 58.767 47.619 0.00 0.00 0.00 3.01
2144 2968 2.363306 ACTGAAAGGTGTGGCATGAA 57.637 45.000 0.00 0.00 39.30 2.57
2171 2995 7.446931 TGGAGCAAGACACATTTTGAGTTTATA 59.553 33.333 0.00 0.00 0.00 0.98
2172 2996 6.265196 TGGAGCAAGACACATTTTGAGTTTAT 59.735 34.615 0.00 0.00 0.00 1.40
2173 2997 5.592282 TGGAGCAAGACACATTTTGAGTTTA 59.408 36.000 0.00 0.00 0.00 2.01
2175 2999 3.953612 TGGAGCAAGACACATTTTGAGTT 59.046 39.130 0.00 0.00 0.00 3.01
2176 3000 3.554934 TGGAGCAAGACACATTTTGAGT 58.445 40.909 0.00 0.00 0.00 3.41
2177 3001 4.778534 ATGGAGCAAGACACATTTTGAG 57.221 40.909 0.00 0.00 0.00 3.02
2179 3003 5.130292 AGAATGGAGCAAGACACATTTTG 57.870 39.130 0.00 0.00 34.01 2.44
2180 3004 4.828939 TGAGAATGGAGCAAGACACATTTT 59.171 37.500 0.00 0.00 34.01 1.82
2181 3005 4.401022 TGAGAATGGAGCAAGACACATTT 58.599 39.130 0.00 0.00 34.01 2.32
2182 3006 4.025040 TGAGAATGGAGCAAGACACATT 57.975 40.909 0.00 0.00 36.35 2.71
2183 3007 3.708403 TGAGAATGGAGCAAGACACAT 57.292 42.857 0.00 0.00 0.00 3.21
2184 3008 3.008266 TGATGAGAATGGAGCAAGACACA 59.992 43.478 0.00 0.00 0.00 3.72
2185 3009 3.603532 TGATGAGAATGGAGCAAGACAC 58.396 45.455 0.00 0.00 0.00 3.67
2212 3039 7.696992 ACGTCATTATTTACAAGGTTTCCAT 57.303 32.000 0.00 0.00 0.00 3.41
2213 3040 7.513371 AACGTCATTATTTACAAGGTTTCCA 57.487 32.000 0.00 0.00 0.00 3.53
2214 3041 8.806177 AAAACGTCATTATTTACAAGGTTTCC 57.194 30.769 0.00 0.00 0.00 3.13
2217 3044 9.063615 AGAGAAAACGTCATTATTTACAAGGTT 57.936 29.630 0.00 0.00 0.00 3.50
2218 3045 8.504005 CAGAGAAAACGTCATTATTTACAAGGT 58.496 33.333 0.00 0.00 0.00 3.50
2220 3047 8.230486 AGCAGAGAAAACGTCATTATTTACAAG 58.770 33.333 0.00 0.00 0.00 3.16
2221 3048 8.094798 AGCAGAGAAAACGTCATTATTTACAA 57.905 30.769 0.00 0.00 0.00 2.41
2227 3054 4.142600 GGCAAGCAGAGAAAACGTCATTAT 60.143 41.667 0.00 0.00 0.00 1.28
2230 3057 1.537202 GGCAAGCAGAGAAAACGTCAT 59.463 47.619 0.00 0.00 0.00 3.06
2233 3060 1.680338 AAGGCAAGCAGAGAAAACGT 58.320 45.000 0.00 0.00 0.00 3.99
2235 3062 2.130395 GCAAAGGCAAGCAGAGAAAAC 58.870 47.619 0.00 0.00 40.72 2.43
2255 3165 4.891756 AGTCCATTCAAAGCATTAGGGATG 59.108 41.667 0.00 0.00 38.85 3.51
2256 3166 4.891756 CAGTCCATTCAAAGCATTAGGGAT 59.108 41.667 0.00 0.00 0.00 3.85
2257 3167 4.272489 CAGTCCATTCAAAGCATTAGGGA 58.728 43.478 0.00 0.00 0.00 4.20
2258 3168 3.382546 CCAGTCCATTCAAAGCATTAGGG 59.617 47.826 0.00 0.00 0.00 3.53
2259 3169 3.181483 GCCAGTCCATTCAAAGCATTAGG 60.181 47.826 0.00 0.00 0.00 2.69
2260 3170 3.444742 TGCCAGTCCATTCAAAGCATTAG 59.555 43.478 0.00 0.00 0.00 1.73
2261 3171 3.429492 TGCCAGTCCATTCAAAGCATTA 58.571 40.909 0.00 0.00 0.00 1.90
2262 3172 2.232941 CTGCCAGTCCATTCAAAGCATT 59.767 45.455 0.00 0.00 0.00 3.56
2263 3173 1.822990 CTGCCAGTCCATTCAAAGCAT 59.177 47.619 0.00 0.00 0.00 3.79
2264 3174 1.250328 CTGCCAGTCCATTCAAAGCA 58.750 50.000 0.00 0.00 0.00 3.91
2265 3175 0.108945 GCTGCCAGTCCATTCAAAGC 60.109 55.000 0.00 0.00 0.00 3.51
2266 3176 1.250328 TGCTGCCAGTCCATTCAAAG 58.750 50.000 0.00 0.00 0.00 2.77
2267 3177 1.820519 GATGCTGCCAGTCCATTCAAA 59.179 47.619 0.00 0.00 0.00 2.69
2268 3178 1.005097 AGATGCTGCCAGTCCATTCAA 59.995 47.619 0.00 0.00 0.00 2.69
2269 3179 0.622136 AGATGCTGCCAGTCCATTCA 59.378 50.000 0.00 0.00 0.00 2.57
2270 3180 1.760192 AAGATGCTGCCAGTCCATTC 58.240 50.000 0.00 0.00 0.00 2.67
2271 3181 2.226962 AAAGATGCTGCCAGTCCATT 57.773 45.000 0.00 0.00 0.00 3.16
2272 3182 2.226962 AAAAGATGCTGCCAGTCCAT 57.773 45.000 0.00 0.00 0.00 3.41
2273 3183 1.614903 CAAAAAGATGCTGCCAGTCCA 59.385 47.619 0.00 0.00 0.00 4.02
2274 3184 1.888512 TCAAAAAGATGCTGCCAGTCC 59.111 47.619 0.00 0.00 0.00 3.85
2275 3185 3.243501 TGTTCAAAAAGATGCTGCCAGTC 60.244 43.478 0.00 0.00 0.00 3.51
2276 3186 2.694628 TGTTCAAAAAGATGCTGCCAGT 59.305 40.909 0.00 0.00 0.00 4.00
2277 3187 3.374220 TGTTCAAAAAGATGCTGCCAG 57.626 42.857 0.00 0.00 0.00 4.85
2278 3188 4.339872 AATGTTCAAAAAGATGCTGCCA 57.660 36.364 0.00 0.00 0.00 4.92
2279 3189 5.870978 ACATAATGTTCAAAAAGATGCTGCC 59.129 36.000 0.00 0.00 0.00 4.85
2280 3190 6.956299 ACATAATGTTCAAAAAGATGCTGC 57.044 33.333 0.00 0.00 0.00 5.25
2281 3191 9.630098 AAGTACATAATGTTCAAAAAGATGCTG 57.370 29.630 0.00 0.00 0.00 4.41
2299 3209 6.239317 CCTGGCAGTGCTTATCTAAGTACATA 60.239 42.308 16.11 0.00 46.84 2.29
2300 3210 5.453903 CCTGGCAGTGCTTATCTAAGTACAT 60.454 44.000 16.11 3.77 46.84 2.29
2320 3230 4.098960 AGCATTTGCAATGAATAGACCTGG 59.901 41.667 0.00 0.00 45.16 4.45
2341 3251 6.412362 TTCCTAATCTTACCAGATCAGAGC 57.588 41.667 0.00 0.00 39.00 4.09
2355 3265 5.894298 TGGCACATCACTATTCCTAATCT 57.106 39.130 0.00 0.00 0.00 2.40
2372 3282 3.753272 AGGCACGATATCAATAATGGCAC 59.247 43.478 3.12 0.00 35.25 5.01
2373 3283 4.019792 AGGCACGATATCAATAATGGCA 57.980 40.909 3.12 0.00 35.25 4.92
2374 3284 5.376854 AAAGGCACGATATCAATAATGGC 57.623 39.130 3.12 5.18 0.00 4.40
2375 3285 6.969366 TGAAAAGGCACGATATCAATAATGG 58.031 36.000 3.12 0.00 0.00 3.16
2376 3286 7.914871 TGTTGAAAAGGCACGATATCAATAATG 59.085 33.333 3.12 0.00 0.00 1.90
2377 3287 7.995289 TGTTGAAAAGGCACGATATCAATAAT 58.005 30.769 3.12 0.00 0.00 1.28
2378 3288 7.384439 TGTTGAAAAGGCACGATATCAATAA 57.616 32.000 3.12 0.00 0.00 1.40
2379 3289 6.993786 TGTTGAAAAGGCACGATATCAATA 57.006 33.333 3.12 0.00 0.00 1.90
2380 3290 5.895636 TGTTGAAAAGGCACGATATCAAT 57.104 34.783 3.12 0.00 0.00 2.57
2381 3291 5.414144 TGATGTTGAAAAGGCACGATATCAA 59.586 36.000 3.12 0.00 29.57 2.57
2382 3292 4.940654 TGATGTTGAAAAGGCACGATATCA 59.059 37.500 3.12 0.00 0.00 2.15
2383 3293 5.163764 TGTGATGTTGAAAAGGCACGATATC 60.164 40.000 0.00 0.00 0.00 1.63
2384 3294 4.699735 TGTGATGTTGAAAAGGCACGATAT 59.300 37.500 0.00 0.00 0.00 1.63
2385 3295 4.068599 TGTGATGTTGAAAAGGCACGATA 58.931 39.130 0.00 0.00 0.00 2.92
2386 3296 2.884012 TGTGATGTTGAAAAGGCACGAT 59.116 40.909 0.00 0.00 0.00 3.73
2387 3297 2.032799 GTGTGATGTTGAAAAGGCACGA 59.967 45.455 0.00 0.00 0.00 4.35
2388 3298 2.033299 AGTGTGATGTTGAAAAGGCACG 59.967 45.455 0.00 0.00 0.00 5.34
2389 3299 3.715628 AGTGTGATGTTGAAAAGGCAC 57.284 42.857 0.00 0.00 0.00 5.01
2420 3361 9.355215 AGAGTTCACAGTCATAAGTTATTAACG 57.645 33.333 1.03 0.00 36.23 3.18
2433 3377 4.500127 TCGAAACAAAGAGTTCACAGTCA 58.500 39.130 0.00 0.00 40.26 3.41
2436 3380 6.747280 ACATTTTCGAAACAAAGAGTTCACAG 59.253 34.615 10.79 0.00 40.26 3.66
2442 3386 5.743872 GCAAGACATTTTCGAAACAAAGAGT 59.256 36.000 10.79 3.16 0.00 3.24
2501 3445 3.920412 GCAAGCAAAGTAAATGCCACTAC 59.080 43.478 0.00 0.00 44.91 2.73
2530 3474 0.249447 AAAAGCGACAAGGCAAAGGC 60.249 50.000 0.00 0.00 40.13 4.35
2532 3476 5.795441 GTCTATAAAAAGCGACAAGGCAAAG 59.205 40.000 0.00 0.00 34.64 2.77
2535 3479 4.391830 CAGTCTATAAAAAGCGACAAGGCA 59.608 41.667 0.00 0.00 34.64 4.75
2536 3480 4.630069 TCAGTCTATAAAAAGCGACAAGGC 59.370 41.667 0.00 0.00 0.00 4.35
2542 3488 6.472486 CAGAATCGTCAGTCTATAAAAAGCGA 59.528 38.462 0.00 0.00 0.00 4.93
2548 3494 8.737175 ACTGTAACAGAATCGTCAGTCTATAAA 58.263 33.333 0.00 0.00 35.18 1.40
2559 3505 8.053026 ACTCATAACTACTGTAACAGAATCGT 57.947 34.615 0.00 0.00 35.18 3.73
2605 3634 2.384203 GCACCTTGCATCGGTACTC 58.616 57.895 7.78 0.00 44.26 2.59
2794 3823 3.454375 GACTTTGAAGCCGAATATCCGA 58.546 45.455 0.00 0.00 0.00 4.55
2854 3883 1.300080 CCGGGCAAAACAAGCACAG 60.300 57.895 0.00 0.00 34.28 3.66
2857 3886 2.494530 GGACCGGGCAAAACAAGCA 61.495 57.895 11.00 0.00 0.00 3.91
2866 3895 3.770040 CTGATGACGGACCGGGCA 61.770 66.667 20.00 16.11 0.00 5.36
2870 3899 0.530650 CCATTCCTGATGACGGACCG 60.531 60.000 13.61 13.61 38.03 4.79
2871 3900 0.541863 ACCATTCCTGATGACGGACC 59.458 55.000 0.00 0.00 38.03 4.46
2874 3903 2.158914 TCATCACCATTCCTGATGACGG 60.159 50.000 6.94 0.00 45.91 4.79
2875 3904 3.183793 TCATCACCATTCCTGATGACG 57.816 47.619 6.94 0.00 45.91 4.35
2880 3909 1.202687 GCGGATCATCACCATTCCTGA 60.203 52.381 0.00 0.00 0.00 3.86
2889 3918 1.495878 CAGCTAGTGCGGATCATCAC 58.504 55.000 8.11 8.11 45.42 3.06
2893 3922 3.094062 GCCCAGCTAGTGCGGATCA 62.094 63.158 0.00 0.00 45.42 2.92
2896 3925 3.083349 ATGCCCAGCTAGTGCGGA 61.083 61.111 0.00 0.00 45.42 5.54
2905 3934 1.683943 TAGCATTTCTCATGCCCAGC 58.316 50.000 3.17 0.00 45.59 4.85
2906 3935 3.439476 GCTATAGCATTTCTCATGCCCAG 59.561 47.826 20.01 0.49 45.59 4.45
2907 3936 3.415212 GCTATAGCATTTCTCATGCCCA 58.585 45.455 20.01 0.00 45.59 5.36
2908 3937 2.751806 GGCTATAGCATTTCTCATGCCC 59.248 50.000 25.53 0.23 45.59 5.36
2909 3938 2.417933 CGGCTATAGCATTTCTCATGCC 59.582 50.000 25.53 4.21 45.59 4.40
2911 3940 5.640783 TGAATCGGCTATAGCATTTCTCATG 59.359 40.000 25.53 4.38 44.36 3.07
2912 3941 5.798132 TGAATCGGCTATAGCATTTCTCAT 58.202 37.500 25.53 3.74 44.36 2.90
2913 3942 5.213891 TGAATCGGCTATAGCATTTCTCA 57.786 39.130 25.53 16.71 44.36 3.27
2916 3948 5.388890 CGTCTTGAATCGGCTATAGCATTTC 60.389 44.000 25.53 21.62 44.36 2.17
2926 3958 1.272490 TCTTGTCGTCTTGAATCGGCT 59.728 47.619 0.00 0.00 32.71 5.52
3019 4051 2.185310 ATCCGGCAGAGGTTGACCAC 62.185 60.000 0.00 0.00 38.89 4.16
3022 4054 0.036388 TGAATCCGGCAGAGGTTGAC 60.036 55.000 0.00 0.00 0.00 3.18
3035 4067 3.491964 CCAACATGACATGGCATGAATCC 60.492 47.826 41.43 17.82 46.64 3.01
3064 4096 0.608308 TCGCCGGGATCATATCGTCT 60.608 55.000 2.18 0.00 0.00 4.18
3081 4113 3.244976 GCACAAACTCATTCCCATTTCG 58.755 45.455 0.00 0.00 0.00 3.46
3094 4126 1.532868 GATTCAGCAGACGCACAAACT 59.467 47.619 0.00 0.00 42.27 2.66
3103 4135 4.331168 GGATACACAACAGATTCAGCAGAC 59.669 45.833 0.00 0.00 0.00 3.51
3154 4233 1.332997 CTCAGCCATCCGATTTCTTGC 59.667 52.381 0.00 0.00 0.00 4.01
3156 4235 2.503356 AGTCTCAGCCATCCGATTTCTT 59.497 45.455 0.00 0.00 0.00 2.52
3167 4246 1.423584 TTCTCCAACAGTCTCAGCCA 58.576 50.000 0.00 0.00 0.00 4.75
3198 4277 4.215185 ACGAATCACATGCAACAATACACA 59.785 37.500 0.00 0.00 0.00 3.72
3200 4279 4.379290 CCACGAATCACATGCAACAATACA 60.379 41.667 0.00 0.00 0.00 2.29
3222 4301 6.364706 TCATGTGCACGTAATTTGAATTTTCC 59.635 34.615 12.10 0.00 0.00 3.13
3265 4353 3.918566 TCTTATATTGTGGGACGGAGGA 58.081 45.455 0.00 0.00 0.00 3.71
3275 4363 5.533903 AGCTGCAAAGGGATCTTATATTGTG 59.466 40.000 1.02 0.00 32.01 3.33
3278 4366 7.290061 TGTTAGCTGCAAAGGGATCTTATATT 58.710 34.615 1.02 0.00 32.01 1.28
3279 4367 6.841601 TGTTAGCTGCAAAGGGATCTTATAT 58.158 36.000 1.02 0.00 32.01 0.86
3280 4368 6.247229 TGTTAGCTGCAAAGGGATCTTATA 57.753 37.500 1.02 0.00 32.01 0.98
3281 4369 5.116084 TGTTAGCTGCAAAGGGATCTTAT 57.884 39.130 1.02 0.00 32.01 1.73
3282 4370 4.568072 TGTTAGCTGCAAAGGGATCTTA 57.432 40.909 1.02 0.00 32.01 2.10
3283 4371 3.439857 TGTTAGCTGCAAAGGGATCTT 57.560 42.857 1.02 0.00 34.07 2.40
3284 4372 3.659183 ATGTTAGCTGCAAAGGGATCT 57.341 42.857 1.02 0.00 0.00 2.75
3316 4404 4.486090 CTCCGTCCCACAATATAAGATCG 58.514 47.826 0.00 0.00 0.00 3.69
3333 4421 5.687166 TTTTTATCATGTACTCCCTCCGT 57.313 39.130 0.00 0.00 0.00 4.69
3354 4442 4.690748 CACATTACTGTCCGTGACATCTTT 59.309 41.667 7.11 0.00 41.94 2.52
3419 6625 3.829601 TCACCTTCTCTCTCTCAAGTTCC 59.170 47.826 0.00 0.00 0.00 3.62
3430 6636 3.006247 GCTTCAATGGTCACCTTCTCTC 58.994 50.000 0.00 0.00 0.00 3.20
3431 6637 2.373169 TGCTTCAATGGTCACCTTCTCT 59.627 45.455 0.00 0.00 0.00 3.10
3460 6666 3.466836 ACTTGCTTCGTCTTGATTGTCA 58.533 40.909 0.00 0.00 0.00 3.58
3490 6696 3.549827 CCTCGACTCCTTGATGATCTTCG 60.550 52.174 4.32 0.00 0.00 3.79
3519 6725 2.093890 CATGATGCTAGTGTTGCCCAA 58.906 47.619 0.00 0.00 0.00 4.12
3523 6729 1.328680 CGTCCATGATGCTAGTGTTGC 59.671 52.381 0.00 0.00 0.00 4.17
3528 6734 3.118629 ACATTGTCGTCCATGATGCTAGT 60.119 43.478 0.00 0.00 0.00 2.57
3544 6750 3.480470 CAGAACCACTCCTTGACATTGT 58.520 45.455 0.00 0.00 0.00 2.71
3641 6868 4.104776 ACAATTCAGCAAGTCAAACAACG 58.895 39.130 0.00 0.00 0.00 4.10
3682 6911 7.761249 CACACATTCAGCGATAGATATGGAATA 59.239 37.037 0.00 0.00 39.76 1.75
3692 6921 3.957671 ATTGCACACATTCAGCGATAG 57.042 42.857 0.00 0.00 30.84 2.08
3697 6926 7.420002 TCTTTATCATATTGCACACATTCAGC 58.580 34.615 0.00 0.00 0.00 4.26
3715 6944 6.790825 GCGGCGTATTTTTCACTATCTTTATC 59.209 38.462 9.37 0.00 0.00 1.75
3721 6950 2.610374 TGGCGGCGTATTTTTCACTATC 59.390 45.455 9.37 0.00 0.00 2.08
3722 6951 2.634600 TGGCGGCGTATTTTTCACTAT 58.365 42.857 9.37 0.00 0.00 2.12
3732 6961 2.502577 GGGTACTTGGCGGCGTAT 59.497 61.111 9.37 0.00 0.00 3.06
3742 6971 2.886523 GTTTGCTAAAACCCGGGTACTT 59.113 45.455 30.52 24.82 39.90 2.24
3745 6974 2.653234 TGTTTGCTAAAACCCGGGTA 57.347 45.000 30.52 11.17 44.29 3.69
3761 6990 2.510613 CCTGGATAACACGGGTTTGTT 58.489 47.619 9.10 0.56 42.46 2.83
3778 7007 2.427245 CGTCCCTAGCCTGTCCCTG 61.427 68.421 0.00 0.00 0.00 4.45
3780 7009 2.043248 TCGTCCCTAGCCTGTCCC 60.043 66.667 0.00 0.00 0.00 4.46
3787 7016 1.066430 TCACCAAATGTCGTCCCTAGC 60.066 52.381 0.00 0.00 0.00 3.42
3788 7017 3.328382 TTCACCAAATGTCGTCCCTAG 57.672 47.619 0.00 0.00 0.00 3.02
3789 7018 3.605634 CATTCACCAAATGTCGTCCCTA 58.394 45.455 0.00 0.00 40.00 3.53
3796 7025 3.005684 TCCAACAGCATTCACCAAATGTC 59.994 43.478 0.30 0.00 45.55 3.06
3798 7027 3.256383 TCTCCAACAGCATTCACCAAATG 59.744 43.478 0.00 0.00 46.37 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.