Multiple sequence alignment - TraesCS5A01G544600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G544600 chr5A 100.000 3665 0 0 1 3665 700179865 700176201 0.000000e+00 6769.0
1 TraesCS5A01G544600 chr5A 86.129 757 99 5 2912 3665 3515100 3515853 0.000000e+00 811.0
2 TraesCS5A01G544600 chr5A 85.780 218 31 0 1001 1218 640399992 640400209 7.910000e-57 231.0
3 TraesCS5A01G544600 chr5A 100.000 37 0 0 2726 2762 700176911 700176875 6.570000e-08 69.4
4 TraesCS5A01G544600 chr4B 91.831 2534 118 29 212 2728 660488737 660491198 0.000000e+00 3450.0
5 TraesCS5A01G544600 chr4B 83.653 887 133 11 2785 3665 650528883 650528003 0.000000e+00 824.0
6 TraesCS5A01G544600 chr4B 83.540 887 134 11 2785 3665 650408699 650407819 0.000000e+00 819.0
7 TraesCS5A01G544600 chr4B 83.540 887 134 11 2785 3665 650489077 650488197 0.000000e+00 819.0
8 TraesCS5A01G544600 chr4B 83.540 887 134 11 2785 3665 650503746 650502866 0.000000e+00 819.0
9 TraesCS5A01G544600 chr4B 87.000 200 19 4 1 193 660488145 660488344 6.160000e-53 219.0
10 TraesCS5A01G544600 chr4B 80.000 115 14 2 874 979 660489278 660489392 3.920000e-10 76.8
11 TraesCS5A01G544600 chr4B 78.632 117 13 9 789 905 660489369 660489473 2.360000e-07 67.6
12 TraesCS5A01G544600 chrUn 92.126 2451 141 24 296 2728 110462041 110464457 0.000000e+00 3410.0
13 TraesCS5A01G544600 chrUn 96.384 885 27 3 2783 3662 110472817 110473701 0.000000e+00 1452.0
14 TraesCS5A01G544600 chrUn 93.458 107 6 1 296 402 110434848 110434953 1.360000e-34 158.0
15 TraesCS5A01G544600 chrUn 92.523 107 8 0 296 402 110417321 110417427 1.760000e-33 154.0
16 TraesCS5A01G544600 chrUn 91.589 107 8 1 296 402 110430929 110431034 2.950000e-31 147.0
17 TraesCS5A01G544600 chrUn 91.589 107 8 1 296 402 110448982 110449087 2.950000e-31 147.0
18 TraesCS5A01G544600 chrUn 93.651 63 4 0 340 402 478201030 478200968 1.080000e-15 95.3
19 TraesCS5A01G544600 chrUn 86.111 72 10 0 908 979 110462564 110462635 1.090000e-10 78.7
20 TraesCS5A01G544600 chrUn 80.342 117 12 8 789 905 110462612 110462717 1.090000e-10 78.7
21 TraesCS5A01G544600 chrUn 100.000 35 0 0 2726 2760 110472992 110473026 8.500000e-07 65.8
22 TraesCS5A01G544600 chr4D 83.787 882 131 11 2790 3665 503998746 503997871 0.000000e+00 826.0
23 TraesCS5A01G544600 chr5D 86.340 754 97 5 2915 3665 5275057 5274307 0.000000e+00 817.0
24 TraesCS5A01G544600 chr5B 86.262 757 98 5 2912 3665 6624778 6625531 0.000000e+00 817.0
25 TraesCS5A01G544600 chr5B 90.984 244 20 2 984 1227 702627770 702627529 9.810000e-86 327.0
26 TraesCS5A01G544600 chr5B 90.984 244 20 2 984 1227 702760010 702759769 9.810000e-86 327.0
27 TraesCS5A01G544600 chr5B 87.368 285 35 1 2328 2612 702607989 702607706 3.530000e-85 326.0
28 TraesCS5A01G544600 chr5B 90.244 246 22 2 984 1229 702609221 702608978 1.640000e-83 320.0
29 TraesCS5A01G544600 chr5B 87.018 285 36 1 2328 2612 702645699 702645416 1.640000e-83 320.0
30 TraesCS5A01G544600 chr5B 90.244 246 22 2 984 1229 702649391 702649148 1.640000e-83 320.0
31 TraesCS5A01G544600 chr5B 87.018 285 36 1 2328 2612 702740590 702740307 1.640000e-83 320.0
32 TraesCS5A01G544600 chr5B 87.018 285 36 1 2328 2612 702797343 702797060 1.640000e-83 320.0
33 TraesCS5A01G544600 chr5B 90.244 246 22 2 984 1229 702801289 702801046 1.640000e-83 320.0
34 TraesCS5A01G544600 chr5B 87.365 277 34 1 2336 2612 702758769 702758494 2.120000e-82 316.0
35 TraesCS5A01G544600 chr5B 87.004 277 35 1 2336 2612 702626529 702626254 9.880000e-81 311.0
36 TraesCS5A01G544600 chr5B 89.431 246 24 2 984 1229 702741821 702741578 3.550000e-80 309.0
37 TraesCS5A01G544600 chr2B 86.940 268 35 0 2349 2616 5042375 5042108 5.950000e-78 302.0
38 TraesCS5A01G544600 chr7B 76.471 238 42 10 1 227 20675232 20675466 2.310000e-22 117.0
39 TraesCS5A01G544600 chr7B 85.047 107 12 4 124 227 728622260 728622365 5.010000e-19 106.0
40 TraesCS5A01G544600 chr2A 89.610 77 6 2 152 227 522082322 522082247 3.010000e-16 97.1
41 TraesCS5A01G544600 chr2A 83.333 102 13 4 124 222 768890161 768890061 1.400000e-14 91.6
42 TraesCS5A01G544600 chr6A 90.141 71 5 2 137 206 501700318 501700387 1.400000e-14 91.6
43 TraesCS5A01G544600 chr3D 83.333 102 13 4 130 228 445602945 445603045 1.400000e-14 91.6
44 TraesCS5A01G544600 chr6B 87.342 79 8 2 154 231 563513083 563513160 5.040000e-14 89.8
45 TraesCS5A01G544600 chr6B 85.714 84 7 4 142 222 239928657 239928738 2.350000e-12 84.2
46 TraesCS5A01G544600 chr3B 86.076 79 8 3 152 228 584510476 584510553 8.440000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G544600 chr5A 700176201 700179865 3664 True 3419.200000 6769 100.00000 1 3665 2 chr5A.!!$R1 3664
1 TraesCS5A01G544600 chr5A 3515100 3515853 753 False 811.000000 811 86.12900 2912 3665 1 chr5A.!!$F1 753
2 TraesCS5A01G544600 chr4B 660488145 660491198 3053 False 953.350000 3450 84.36575 1 2728 4 chr4B.!!$F1 2727
3 TraesCS5A01G544600 chr4B 650528003 650528883 880 True 824.000000 824 83.65300 2785 3665 1 chr4B.!!$R4 880
4 TraesCS5A01G544600 chr4B 650407819 650408699 880 True 819.000000 819 83.54000 2785 3665 1 chr4B.!!$R1 880
5 TraesCS5A01G544600 chr4B 650488197 650489077 880 True 819.000000 819 83.54000 2785 3665 1 chr4B.!!$R2 880
6 TraesCS5A01G544600 chr4B 650502866 650503746 880 True 819.000000 819 83.54000 2785 3665 1 chr4B.!!$R3 880
7 TraesCS5A01G544600 chrUn 110462041 110464457 2416 False 1189.133333 3410 86.19300 296 2728 3 chrUn.!!$F4 2432
8 TraesCS5A01G544600 chrUn 110472817 110473701 884 False 758.900000 1452 98.19200 2726 3662 2 chrUn.!!$F5 936
9 TraesCS5A01G544600 chr4D 503997871 503998746 875 True 826.000000 826 83.78700 2790 3665 1 chr4D.!!$R1 875
10 TraesCS5A01G544600 chr5D 5274307 5275057 750 True 817.000000 817 86.34000 2915 3665 1 chr5D.!!$R1 750
11 TraesCS5A01G544600 chr5B 6624778 6625531 753 False 817.000000 817 86.26200 2912 3665 1 chr5B.!!$F1 753
12 TraesCS5A01G544600 chr5B 702607706 702609221 1515 True 323.000000 326 88.80600 984 2612 2 chr5B.!!$R1 1628
13 TraesCS5A01G544600 chr5B 702758494 702760010 1516 True 321.500000 327 89.17450 984 2612 2 chr5B.!!$R5 1628
14 TraesCS5A01G544600 chr5B 702645416 702649391 3975 True 320.000000 320 88.63100 984 2612 2 chr5B.!!$R3 1628
15 TraesCS5A01G544600 chr5B 702797060 702801289 4229 True 320.000000 320 88.63100 984 2612 2 chr5B.!!$R6 1628
16 TraesCS5A01G544600 chr5B 702626254 702627770 1516 True 319.000000 327 88.99400 984 2612 2 chr5B.!!$R2 1628
17 TraesCS5A01G544600 chr5B 702740307 702741821 1514 True 314.500000 320 88.22450 984 2612 2 chr5B.!!$R4 1628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
103 104 0.247460 CATGCCTCGGTTCTCACTCA 59.753 55.0 0.00 0.0 0.00 3.41 F
210 218 0.327191 TTCACCCCCTCCCCATAGAC 60.327 60.0 0.00 0.0 0.00 2.59 F
1232 1620 0.395311 AGGTACCGCTCGAATGGAGA 60.395 55.0 6.18 0.0 46.23 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1381 1813 0.909623 AACCGATTCATCTCCGGGTT 59.090 50.000 0.0 0.0 41.06 4.11 R
1660 4835 1.133637 TGGTAACCAAGGCATGTGTGT 60.134 47.619 0.0 0.0 0.00 3.72 R
2921 6267 0.036388 CCAGGTCCAACACATACGCT 60.036 55.000 0.0 0.0 0.00 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.032620 AGCATCACCGGTTACCTCTAG 58.967 52.381 2.97 0.00 0.00 2.43
31 32 5.954150 ACCGGTTACCTCTAGACTCAATTTA 59.046 40.000 0.00 0.00 0.00 1.40
36 37 9.668497 GGTTACCTCTAGACTCAATTTACATTT 57.332 33.333 0.00 0.00 0.00 2.32
79 80 5.716094 AGTTTCGGTTAAGTGTTTGCTTTT 58.284 33.333 0.00 0.00 0.00 2.27
102 103 1.086634 GCATGCCTCGGTTCTCACTC 61.087 60.000 6.36 0.00 0.00 3.51
103 104 0.247460 CATGCCTCGGTTCTCACTCA 59.753 55.000 0.00 0.00 0.00 3.41
110 111 4.008330 CCTCGGTTCTCACTCACTAGTTA 58.992 47.826 0.00 0.00 31.97 2.24
117 118 8.188799 CGGTTCTCACTCACTAGTTAATATTCA 58.811 37.037 0.00 0.00 31.97 2.57
139 140 8.818141 TTCACTCTCTGTTTACTGTTTATCTG 57.182 34.615 0.00 0.00 0.00 2.90
141 142 6.870965 CACTCTCTGTTTACTGTTTATCTGCT 59.129 38.462 0.00 0.00 0.00 4.24
142 143 6.870965 ACTCTCTGTTTACTGTTTATCTGCTG 59.129 38.462 0.00 0.00 0.00 4.41
143 144 5.639506 TCTCTGTTTACTGTTTATCTGCTGC 59.360 40.000 0.00 0.00 0.00 5.25
144 145 5.551233 TCTGTTTACTGTTTATCTGCTGCT 58.449 37.500 0.00 0.00 0.00 4.24
145 146 5.409520 TCTGTTTACTGTTTATCTGCTGCTG 59.590 40.000 0.00 0.00 0.00 4.41
146 147 5.063204 TGTTTACTGTTTATCTGCTGCTGT 58.937 37.500 0.00 0.00 0.00 4.40
147 148 5.049474 TGTTTACTGTTTATCTGCTGCTGTG 60.049 40.000 0.00 0.00 0.00 3.66
149 150 3.480470 ACTGTTTATCTGCTGCTGTGTT 58.520 40.909 0.00 0.00 0.00 3.32
150 151 4.641396 ACTGTTTATCTGCTGCTGTGTTA 58.359 39.130 0.00 0.00 0.00 2.41
153 154 5.244755 TGTTTATCTGCTGCTGTGTTATGA 58.755 37.500 0.00 0.00 0.00 2.15
163 171 5.122869 GCTGCTGTGTTATGAGAGATTTGAA 59.877 40.000 0.00 0.00 0.00 2.69
196 204 9.725019 AAAGAAATTTTAAATCTCCCATTCACC 57.275 29.630 0.00 0.00 0.00 4.02
197 205 7.851228 AGAAATTTTAAATCTCCCATTCACCC 58.149 34.615 0.00 0.00 0.00 4.61
198 206 6.560003 AATTTTAAATCTCCCATTCACCCC 57.440 37.500 0.00 0.00 0.00 4.95
199 207 3.680777 TTAAATCTCCCATTCACCCCC 57.319 47.619 0.00 0.00 0.00 5.40
200 208 1.698874 AAATCTCCCATTCACCCCCT 58.301 50.000 0.00 0.00 0.00 4.79
201 209 1.226311 AATCTCCCATTCACCCCCTC 58.774 55.000 0.00 0.00 0.00 4.30
202 210 0.699231 ATCTCCCATTCACCCCCTCC 60.699 60.000 0.00 0.00 0.00 4.30
203 211 2.286885 TCCCATTCACCCCCTCCC 60.287 66.667 0.00 0.00 0.00 4.30
204 212 3.429580 CCCATTCACCCCCTCCCC 61.430 72.222 0.00 0.00 0.00 4.81
205 213 2.616893 CCATTCACCCCCTCCCCA 60.617 66.667 0.00 0.00 0.00 4.96
206 214 2.014550 CCATTCACCCCCTCCCCAT 61.015 63.158 0.00 0.00 0.00 4.00
207 215 0.700963 CCATTCACCCCCTCCCCATA 60.701 60.000 0.00 0.00 0.00 2.74
208 216 0.773644 CATTCACCCCCTCCCCATAG 59.226 60.000 0.00 0.00 0.00 2.23
209 217 0.653397 ATTCACCCCCTCCCCATAGA 59.347 55.000 0.00 0.00 0.00 1.98
210 218 0.327191 TTCACCCCCTCCCCATAGAC 60.327 60.000 0.00 0.00 0.00 2.59
222 604 4.543689 TCCCCATAGACATACTTCGTTCT 58.456 43.478 0.00 0.00 0.00 3.01
251 633 6.125741 ACTCTCCTCCTTCCCTATATCTTTCA 60.126 42.308 0.00 0.00 0.00 2.69
285 667 3.426426 CGCAAGCTCGGTAGGTAGATATC 60.426 52.174 0.00 0.00 31.75 1.63
289 671 4.581868 AGCTCGGTAGGTAGATATCTGTC 58.418 47.826 15.79 8.15 0.00 3.51
290 672 4.287585 AGCTCGGTAGGTAGATATCTGTCT 59.712 45.833 15.79 13.71 0.00 3.41
291 673 5.005094 GCTCGGTAGGTAGATATCTGTCTT 58.995 45.833 15.79 7.41 0.00 3.01
292 674 5.474189 GCTCGGTAGGTAGATATCTGTCTTT 59.526 44.000 15.79 4.62 0.00 2.52
293 675 6.016108 GCTCGGTAGGTAGATATCTGTCTTTT 60.016 42.308 15.79 0.00 0.00 2.27
294 676 7.507733 TCGGTAGGTAGATATCTGTCTTTTC 57.492 40.000 15.79 6.76 0.00 2.29
307 689 5.766590 TCTGTCTTTTCCTTTTCCTTTCCT 58.233 37.500 0.00 0.00 0.00 3.36
321 703 6.902771 TTCCTTTCCTTCTATATCCTCTCG 57.097 41.667 0.00 0.00 0.00 4.04
357 739 4.777854 TGGAGCAGCCGCCTCCTA 62.778 66.667 14.57 2.02 40.66 2.94
387 769 2.859165 TTTCAGGCAACCACTAGAGG 57.141 50.000 4.44 4.44 37.17 3.69
475 857 1.070038 GTTGCAAATTGGCACCGATG 58.930 50.000 7.11 0.00 44.86 3.84
561 943 5.817816 CCCACATCCTAGTAAACTAAAGCAG 59.182 44.000 0.00 0.00 0.00 4.24
613 998 8.904099 AAAGACACTAACAGCTATACAAAAGT 57.096 30.769 0.00 0.00 0.00 2.66
614 999 9.991906 AAAGACACTAACAGCTATACAAAAGTA 57.008 29.630 0.00 0.00 0.00 2.24
615 1000 8.983307 AGACACTAACAGCTATACAAAAGTAC 57.017 34.615 0.00 0.00 0.00 2.73
617 1002 7.673180 ACACTAACAGCTATACAAAAGTACCA 58.327 34.615 0.00 0.00 0.00 3.25
618 1003 8.319146 ACACTAACAGCTATACAAAAGTACCAT 58.681 33.333 0.00 0.00 0.00 3.55
649 1034 8.366671 AGAAAAATATCCGGAAGATTCTTACG 57.633 34.615 21.67 21.67 36.33 3.18
650 1035 7.441458 AGAAAAATATCCGGAAGATTCTTACGG 59.559 37.037 34.77 34.77 45.52 4.02
698 1086 4.843728 CCATGGTGTGGTTTACTCTATGT 58.156 43.478 2.57 0.00 43.44 2.29
699 1087 4.635765 CCATGGTGTGGTTTACTCTATGTG 59.364 45.833 2.57 0.00 43.44 3.21
700 1088 3.670625 TGGTGTGGTTTACTCTATGTGC 58.329 45.455 0.00 0.00 0.00 4.57
701 1089 3.326588 TGGTGTGGTTTACTCTATGTGCT 59.673 43.478 0.00 0.00 0.00 4.40
702 1090 3.933332 GGTGTGGTTTACTCTATGTGCTC 59.067 47.826 0.00 0.00 0.00 4.26
722 1110 3.815401 CTCCACTTAAATTATCTGCCCCG 59.185 47.826 0.00 0.00 0.00 5.73
726 1114 1.588674 TAAATTATCTGCCCCGTGCG 58.411 50.000 0.00 0.00 45.60 5.34
744 1132 1.710339 GAAGCGACTTCGTGGATGC 59.290 57.895 0.00 0.00 42.22 3.91
745 1133 1.696832 GAAGCGACTTCGTGGATGCC 61.697 60.000 0.00 0.00 42.22 4.40
746 1134 2.434185 GCGACTTCGTGGATGCCA 60.434 61.111 0.00 0.00 42.22 4.92
762 1150 1.028868 GCCAGCCAGCTAGACCAAAG 61.029 60.000 0.00 0.00 0.00 2.77
782 1170 6.202226 CAAAGAAGTAGAAGTCAAAAGCCAC 58.798 40.000 0.00 0.00 0.00 5.01
856 1244 7.913674 ATTGACTACAAACTCTCATTTCCTC 57.086 36.000 0.00 0.00 39.54 3.71
859 1247 7.453393 TGACTACAAACTCTCATTTCCTCAAT 58.547 34.615 0.00 0.00 0.00 2.57
866 1254 2.092212 TCTCATTTCCTCAATCCCAGCC 60.092 50.000 0.00 0.00 0.00 4.85
875 1263 5.411493 TCCTCAATCCCAGCCTGTATATAA 58.589 41.667 0.00 0.00 0.00 0.98
901 1289 4.626287 GCATCCAAAGACCTCTACAATCCA 60.626 45.833 0.00 0.00 0.00 3.41
995 1383 5.173774 ACAATCACAGTAGTTGCACTTTG 57.826 39.130 0.00 0.00 0.00 2.77
996 1384 4.881273 ACAATCACAGTAGTTGCACTTTGA 59.119 37.500 0.00 0.00 39.03 2.69
999 1387 4.960938 TCACAGTAGTTGCACTTTGAGAT 58.039 39.130 0.00 0.00 31.86 2.75
1010 1398 4.467082 TGCACTTTGAGATATGGGCATTTT 59.533 37.500 0.00 0.00 0.00 1.82
1030 1418 7.761249 GCATTTTTGTTCCTCAATACATAGCTT 59.239 33.333 0.00 0.00 35.84 3.74
1137 1525 0.466922 GCTCCATGGGATTCCCTGTG 60.467 60.000 22.38 18.92 45.70 3.66
1194 1582 2.752030 TCCCTAGACATCCCTGACTTG 58.248 52.381 0.00 0.00 0.00 3.16
1201 1589 4.899502 AGACATCCCTGACTTGTACAAAG 58.100 43.478 10.03 4.32 0.00 2.77
1229 1617 1.664151 GAAAAGGTACCGCTCGAATGG 59.336 52.381 6.18 1.17 0.00 3.16
1231 1619 0.460311 AAGGTACCGCTCGAATGGAG 59.540 55.000 6.18 0.00 46.06 3.86
1232 1620 0.395311 AGGTACCGCTCGAATGGAGA 60.395 55.000 6.18 0.00 46.23 3.71
1233 1621 0.674534 GGTACCGCTCGAATGGAGAT 59.325 55.000 9.44 0.00 46.23 2.75
1234 1622 1.336056 GGTACCGCTCGAATGGAGATC 60.336 57.143 9.44 0.00 46.23 2.75
1239 1627 1.730772 CGCTCGAATGGAGATCGATCC 60.731 57.143 21.66 10.04 46.98 3.36
1253 1645 8.470002 TGGAGATCGATCCATGTTATACTATTG 58.530 37.037 21.66 0.00 44.56 1.90
1322 1754 1.417890 ACTCTGTGGTTACTGCTTGCT 59.582 47.619 0.00 0.00 0.00 3.91
1407 4581 4.238514 CGGAGATGAATCGGTTTATCCTC 58.761 47.826 9.39 6.78 32.36 3.71
1443 4617 2.953284 TGTTCCGTATTTGGTTCCCA 57.047 45.000 0.00 0.00 0.00 4.37
1539 4714 2.428187 CCCACACGCTGTTGGGTA 59.572 61.111 14.55 0.00 37.60 3.69
1584 4759 2.739996 CCTGAGATGGAGGCCGCTT 61.740 63.158 6.40 0.00 0.00 4.68
1589 4764 1.221840 GATGGAGGCCGCTTTGAGA 59.778 57.895 6.40 0.00 0.00 3.27
1628 4803 3.760035 ACCAAGCCGAGCGTCGAT 61.760 61.111 0.00 0.00 43.74 3.59
1631 4806 2.202623 AAGCCGAGCGTCGATGTC 60.203 61.111 6.48 2.17 43.74 3.06
1697 4873 5.510430 GTTACCATCCCATTTCTTCTTCCT 58.490 41.667 0.00 0.00 0.00 3.36
1706 4882 4.568592 CCATTTCTTCTTCCTGCCCTACTT 60.569 45.833 0.00 0.00 0.00 2.24
1755 4931 6.101650 TCCTGCATCTACATACCTTGTATG 57.898 41.667 11.63 11.63 40.02 2.39
1811 5005 2.157738 GCTTCTGTTTGAGCTGGTGAT 58.842 47.619 0.00 0.00 0.00 3.06
2020 5217 6.981559 TCAATCATGTCATGGCAAATTACATG 59.018 34.615 20.00 20.00 45.55 3.21
2054 5251 1.099879 ATTCCCTTCAGCGAGCATGC 61.100 55.000 10.51 10.51 0.00 4.06
2112 5309 2.223433 CCATGCTCGCTGAAAGGAATTC 60.223 50.000 0.00 0.00 38.60 2.17
2118 5315 2.679837 TCGCTGAAAGGAATTCTCATGC 59.320 45.455 5.23 6.51 38.92 4.06
2127 5324 3.689649 AGGAATTCTCATGCCGTAACAAC 59.310 43.478 5.23 0.00 32.12 3.32
2128 5325 3.438781 GGAATTCTCATGCCGTAACAACA 59.561 43.478 5.23 0.00 0.00 3.33
2141 5338 7.468441 TGCCGTAACAACATAATTTGTCATAG 58.532 34.615 0.00 0.00 38.82 2.23
2158 5355 6.020984 TGTCATAGAAAATGTTCGATTTGCG 58.979 36.000 0.00 0.00 38.90 4.85
2182 5379 7.750458 GCGATGTTTAAAAATCTGACATCTGAA 59.250 33.333 14.96 0.00 42.59 3.02
2248 5508 4.018409 GGGCCATTGTCCCTTCAC 57.982 61.111 4.39 0.00 40.66 3.18
2264 5524 4.386312 CCCTTCACCATAAATTAGAGGGCA 60.386 45.833 0.00 0.00 0.00 5.36
2265 5525 4.823989 CCTTCACCATAAATTAGAGGGCAG 59.176 45.833 0.00 0.00 0.00 4.85
2416 5758 2.810400 GCAGAGAGGTTAAGTGCACCAA 60.810 50.000 14.63 5.19 36.67 3.67
2449 5791 3.452990 TGGCGACCTCCTTGACATAATTA 59.547 43.478 0.00 0.00 0.00 1.40
2668 6010 5.122396 ACTCATTCCGTCTCAAAATAAGTGC 59.878 40.000 0.00 0.00 0.00 4.40
2669 6011 5.245531 TCATTCCGTCTCAAAATAAGTGCT 58.754 37.500 0.00 0.00 0.00 4.40
2728 6070 3.008049 GGTCGGAGGGAGTATAATGCATT 59.992 47.826 17.56 17.56 0.00 3.56
2729 6071 4.222145 GGTCGGAGGGAGTATAATGCATTA 59.778 45.833 20.95 20.95 0.00 1.90
2730 6072 5.411781 GTCGGAGGGAGTATAATGCATTAG 58.588 45.833 22.76 6.93 0.00 1.73
2731 6073 5.047235 GTCGGAGGGAGTATAATGCATTAGT 60.047 44.000 22.76 13.82 0.00 2.24
2732 6074 5.542635 TCGGAGGGAGTATAATGCATTAGTT 59.457 40.000 22.76 10.95 0.00 2.24
2733 6075 6.042781 TCGGAGGGAGTATAATGCATTAGTTT 59.957 38.462 22.76 10.27 0.00 2.66
2734 6076 6.710744 CGGAGGGAGTATAATGCATTAGTTTT 59.289 38.462 22.76 9.94 0.00 2.43
2735 6077 7.228706 CGGAGGGAGTATAATGCATTAGTTTTT 59.771 37.037 22.76 9.59 0.00 1.94
2736 6078 8.352942 GGAGGGAGTATAATGCATTAGTTTTTG 58.647 37.037 22.76 0.00 0.00 2.44
2737 6079 8.237811 AGGGAGTATAATGCATTAGTTTTTGG 57.762 34.615 22.76 0.00 0.00 3.28
2738 6080 7.839200 AGGGAGTATAATGCATTAGTTTTTGGT 59.161 33.333 22.76 7.58 0.00 3.67
2739 6081 8.474831 GGGAGTATAATGCATTAGTTTTTGGTT 58.525 33.333 22.76 6.92 0.00 3.67
2743 6085 9.796120 GTATAATGCATTAGTTTTTGGTTAGCA 57.204 29.630 22.76 0.00 0.00 3.49
2744 6086 8.931385 ATAATGCATTAGTTTTTGGTTAGCAG 57.069 30.769 22.76 0.00 32.59 4.24
2745 6087 6.588719 ATGCATTAGTTTTTGGTTAGCAGA 57.411 33.333 0.00 0.00 32.59 4.26
2746 6088 6.588719 TGCATTAGTTTTTGGTTAGCAGAT 57.411 33.333 0.00 0.00 0.00 2.90
2747 6089 6.389091 TGCATTAGTTTTTGGTTAGCAGATG 58.611 36.000 0.00 0.00 0.00 2.90
2748 6090 6.015519 TGCATTAGTTTTTGGTTAGCAGATGT 60.016 34.615 0.00 0.00 0.00 3.06
2749 6091 7.175816 TGCATTAGTTTTTGGTTAGCAGATGTA 59.824 33.333 0.00 0.00 0.00 2.29
2750 6092 7.698130 GCATTAGTTTTTGGTTAGCAGATGTAG 59.302 37.037 0.00 0.00 0.00 2.74
2751 6093 8.946085 CATTAGTTTTTGGTTAGCAGATGTAGA 58.054 33.333 0.00 0.00 0.00 2.59
2752 6094 9.686683 ATTAGTTTTTGGTTAGCAGATGTAGAT 57.313 29.630 0.00 0.00 0.00 1.98
2753 6095 7.383102 AGTTTTTGGTTAGCAGATGTAGATG 57.617 36.000 0.00 0.00 0.00 2.90
2754 6096 7.168219 AGTTTTTGGTTAGCAGATGTAGATGA 58.832 34.615 0.00 0.00 0.00 2.92
2755 6097 7.665559 AGTTTTTGGTTAGCAGATGTAGATGAA 59.334 33.333 0.00 0.00 0.00 2.57
2756 6098 7.994425 TTTTGGTTAGCAGATGTAGATGAAA 57.006 32.000 0.00 0.00 0.00 2.69
2757 6099 7.994425 TTTGGTTAGCAGATGTAGATGAAAA 57.006 32.000 0.00 0.00 0.00 2.29
2758 6100 7.994425 TTGGTTAGCAGATGTAGATGAAAAA 57.006 32.000 0.00 0.00 0.00 1.94
2847 6189 6.238703 GGGAAGATCATGAGAGCAAAAGAATC 60.239 42.308 0.09 0.00 30.99 2.52
3009 6356 4.077300 AGTAGTGATACCATGCATGTGG 57.923 45.455 24.58 15.19 45.04 4.17
3045 6392 6.459298 GCTGACGGCTTTCTTATACTACTGTA 60.459 42.308 0.00 0.00 38.06 2.74
3207 6554 1.974265 TCCATGACTTTGCAAACGGA 58.026 45.000 8.05 6.61 0.00 4.69
3293 6640 3.611057 GCACACATCAGGCTGAAAGAAAG 60.611 47.826 22.84 11.08 34.07 2.62
3346 6693 1.228184 GGCCGAGTCGAGGAGGATA 60.228 63.158 15.64 0.00 0.00 2.59
3429 6776 0.469331 CTGGCATGATCATGGGCCTT 60.469 55.000 31.62 0.00 46.53 4.35
3514 6861 4.095036 GCAACACCAGGTTCTTAATAGCTC 59.905 45.833 0.00 0.00 37.72 4.09
3515 6862 5.491982 CAACACCAGGTTCTTAATAGCTCT 58.508 41.667 0.00 0.00 37.72 4.09
3544 6892 7.255730 GGAGGAGCAAAAACATATCATTAGCAT 60.256 37.037 0.00 0.00 0.00 3.79
3626 6974 3.696051 TCAAGGAGGCAATTAGAATGCAC 59.304 43.478 0.00 0.00 45.60 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.860080 TGTAAATTGAGTCTAGAGGTAACCG 58.140 40.000 0.00 0.00 37.17 4.44
79 80 0.462581 GAGAACCGAGGCATGCATCA 60.463 55.000 29.58 0.00 0.00 3.07
117 118 6.870965 CAGCAGATAAACAGTAAACAGAGAGT 59.129 38.462 0.00 0.00 0.00 3.24
127 128 4.271696 ACACAGCAGCAGATAAACAGTA 57.728 40.909 0.00 0.00 0.00 2.74
131 132 5.582269 TCTCATAACACAGCAGCAGATAAAC 59.418 40.000 0.00 0.00 0.00 2.01
136 137 2.827921 TCTCTCATAACACAGCAGCAGA 59.172 45.455 0.00 0.00 0.00 4.26
137 138 3.242549 TCTCTCATAACACAGCAGCAG 57.757 47.619 0.00 0.00 0.00 4.24
139 140 4.633126 TCAAATCTCTCATAACACAGCAGC 59.367 41.667 0.00 0.00 0.00 5.25
141 142 6.233434 ACTTCAAATCTCTCATAACACAGCA 58.767 36.000 0.00 0.00 0.00 4.41
142 143 6.734104 ACTTCAAATCTCTCATAACACAGC 57.266 37.500 0.00 0.00 0.00 4.40
143 144 9.604626 GAAAACTTCAAATCTCTCATAACACAG 57.395 33.333 0.00 0.00 0.00 3.66
144 145 9.119418 TGAAAACTTCAAATCTCTCATAACACA 57.881 29.630 0.00 0.00 36.59 3.72
145 146 9.950680 TTGAAAACTTCAAATCTCTCATAACAC 57.049 29.630 0.00 0.00 45.94 3.32
193 201 0.401979 ATGTCTATGGGGAGGGGGTG 60.402 60.000 0.00 0.00 0.00 4.61
194 202 1.132495 GTATGTCTATGGGGAGGGGGT 60.132 57.143 0.00 0.00 0.00 4.95
195 203 1.152271 AGTATGTCTATGGGGAGGGGG 59.848 57.143 0.00 0.00 0.00 5.40
196 204 2.723530 AGTATGTCTATGGGGAGGGG 57.276 55.000 0.00 0.00 0.00 4.79
197 205 2.563179 CGAAGTATGTCTATGGGGAGGG 59.437 54.545 0.00 0.00 0.00 4.30
198 206 3.231818 ACGAAGTATGTCTATGGGGAGG 58.768 50.000 0.00 0.00 41.94 4.30
199 207 4.585162 AGAACGAAGTATGTCTATGGGGAG 59.415 45.833 0.00 0.00 45.00 4.30
200 208 4.543689 AGAACGAAGTATGTCTATGGGGA 58.456 43.478 0.00 0.00 45.00 4.81
201 209 4.939052 AGAACGAAGTATGTCTATGGGG 57.061 45.455 0.00 0.00 45.00 4.96
202 210 6.696148 GTGTAAGAACGAAGTATGTCTATGGG 59.304 42.308 0.00 0.00 45.00 4.00
203 211 7.481642 AGTGTAAGAACGAAGTATGTCTATGG 58.518 38.462 0.00 0.00 45.00 2.74
204 212 8.399425 AGAGTGTAAGAACGAAGTATGTCTATG 58.601 37.037 0.00 0.00 45.00 2.23
205 213 8.508883 AGAGTGTAAGAACGAAGTATGTCTAT 57.491 34.615 0.00 0.00 45.00 1.98
206 214 7.065563 GGAGAGTGTAAGAACGAAGTATGTCTA 59.934 40.741 0.00 0.00 45.00 2.59
207 215 6.127952 GGAGAGTGTAAGAACGAAGTATGTCT 60.128 42.308 0.00 0.00 45.00 3.41
208 216 6.028987 GGAGAGTGTAAGAACGAAGTATGTC 58.971 44.000 0.00 0.00 45.00 3.06
209 217 5.711036 AGGAGAGTGTAAGAACGAAGTATGT 59.289 40.000 0.00 0.00 45.00 2.29
210 218 6.197364 AGGAGAGTGTAAGAACGAAGTATG 57.803 41.667 0.00 0.00 45.00 2.39
222 604 4.901785 ATAGGGAAGGAGGAGAGTGTAA 57.098 45.455 0.00 0.00 0.00 2.41
251 633 2.439104 GCTTGCGGAGGAGAGGGAT 61.439 63.158 0.00 0.00 0.00 3.85
285 667 6.322456 AGAAGGAAAGGAAAAGGAAAAGACAG 59.678 38.462 0.00 0.00 0.00 3.51
290 672 9.475620 GGATATAGAAGGAAAGGAAAAGGAAAA 57.524 33.333 0.00 0.00 0.00 2.29
291 673 8.846804 AGGATATAGAAGGAAAGGAAAAGGAAA 58.153 33.333 0.00 0.00 0.00 3.13
292 674 8.407313 AGGATATAGAAGGAAAGGAAAAGGAA 57.593 34.615 0.00 0.00 0.00 3.36
293 675 7.851968 AGAGGATATAGAAGGAAAGGAAAAGGA 59.148 37.037 0.00 0.00 0.00 3.36
294 676 8.040002 AGAGGATATAGAAGGAAAGGAAAAGG 57.960 38.462 0.00 0.00 0.00 3.11
307 689 8.707796 AACCAAGATAACGAGAGGATATAGAA 57.292 34.615 0.00 0.00 0.00 2.10
321 703 7.826690 TGCTCCATTAGAAAAACCAAGATAAC 58.173 34.615 0.00 0.00 0.00 1.89
357 739 7.354312 AGTGGTTGCCTGAAAATAACCTATAT 58.646 34.615 0.00 0.00 42.32 0.86
387 769 2.094894 CGGCTCAGATGTCAACATGAAC 59.905 50.000 0.00 0.00 36.57 3.18
452 834 1.274798 GGTGCCAATTTGCAACGACG 61.275 55.000 5.67 0.00 44.11 5.12
663 1048 2.898612 ACACCATGGCAAACATCATCAA 59.101 40.909 13.04 0.00 37.84 2.57
668 1056 3.818586 CCACACCATGGCAAACATC 57.181 52.632 13.04 0.00 43.24 3.06
686 1074 7.900782 TTTAAGTGGAGCACATAGAGTAAAC 57.099 36.000 0.00 0.00 36.74 2.01
694 1082 6.486657 GGCAGATAATTTAAGTGGAGCACATA 59.513 38.462 0.00 0.00 36.74 2.29
695 1083 5.300286 GGCAGATAATTTAAGTGGAGCACAT 59.700 40.000 0.00 0.00 36.74 3.21
696 1084 4.640201 GGCAGATAATTTAAGTGGAGCACA 59.360 41.667 0.00 0.00 36.74 4.57
697 1085 4.036852 GGGCAGATAATTTAAGTGGAGCAC 59.963 45.833 0.00 0.00 34.10 4.40
698 1086 4.207165 GGGCAGATAATTTAAGTGGAGCA 58.793 43.478 0.00 0.00 0.00 4.26
699 1087 3.570125 GGGGCAGATAATTTAAGTGGAGC 59.430 47.826 0.00 0.00 0.00 4.70
700 1088 3.815401 CGGGGCAGATAATTTAAGTGGAG 59.185 47.826 0.00 0.00 0.00 3.86
701 1089 3.201266 ACGGGGCAGATAATTTAAGTGGA 59.799 43.478 0.00 0.00 0.00 4.02
702 1090 3.315191 CACGGGGCAGATAATTTAAGTGG 59.685 47.826 0.00 0.00 0.00 4.00
726 1114 1.696832 GGCATCCACGAAGTCGCTTC 61.697 60.000 0.00 8.87 41.61 3.86
730 1118 2.456119 GCTGGCATCCACGAAGTCG 61.456 63.158 0.00 0.00 41.61 4.18
733 1121 2.046023 TGGCTGGCATCCACGAAG 60.046 61.111 5.84 0.00 0.00 3.79
743 1131 1.002134 TTTGGTCTAGCTGGCTGGC 60.002 57.895 5.25 0.00 0.00 4.85
744 1132 0.615331 TCTTTGGTCTAGCTGGCTGG 59.385 55.000 5.25 2.24 0.00 4.85
745 1133 2.289945 ACTTCTTTGGTCTAGCTGGCTG 60.290 50.000 5.25 0.00 0.00 4.85
746 1134 1.981495 ACTTCTTTGGTCTAGCTGGCT 59.019 47.619 0.00 0.00 0.00 4.75
762 1150 7.441458 TCTTAAGTGGCTTTTGACTTCTACTTC 59.559 37.037 1.63 0.00 34.28 3.01
843 1231 3.371380 GCTGGGATTGAGGAAATGAGAGT 60.371 47.826 0.00 0.00 0.00 3.24
856 1244 5.769662 TGCTTTTATATACAGGCTGGGATTG 59.230 40.000 20.34 0.00 0.00 2.67
859 1247 5.514834 GGATGCTTTTATATACAGGCTGGGA 60.515 44.000 20.34 6.65 0.00 4.37
866 1254 8.682936 AGGTCTTTGGATGCTTTTATATACAG 57.317 34.615 0.00 0.00 0.00 2.74
875 1263 4.640771 TGTAGAGGTCTTTGGATGCTTT 57.359 40.909 0.00 0.00 0.00 3.51
939 1327 8.442632 TTGGATGCTTATATATGCAATCTAGC 57.557 34.615 22.70 9.08 42.74 3.42
942 1330 8.954350 GTCTTTGGATGCTTATATATGCAATCT 58.046 33.333 22.70 10.25 42.74 2.40
943 1331 8.186821 GGTCTTTGGATGCTTATATATGCAATC 58.813 37.037 22.70 18.92 42.74 2.67
944 1332 7.892241 AGGTCTTTGGATGCTTATATATGCAAT 59.108 33.333 22.70 13.52 42.74 3.56
995 1383 5.360714 TGAGGAACAAAAATGCCCATATCTC 59.639 40.000 0.00 0.00 0.00 2.75
996 1384 5.271598 TGAGGAACAAAAATGCCCATATCT 58.728 37.500 0.00 0.00 0.00 1.98
999 1387 6.438741 TGTATTGAGGAACAAAAATGCCCATA 59.561 34.615 0.00 0.00 42.03 2.74
1010 1398 6.714810 ACACAAAGCTATGTATTGAGGAACAA 59.285 34.615 2.16 0.00 42.95 2.83
1137 1525 3.008485 AGAAGTCCAAGGTCTCACCAATC 59.992 47.826 0.00 0.00 41.95 2.67
1179 1567 4.348168 ACTTTGTACAAGTCAGGGATGTCT 59.652 41.667 8.56 0.00 0.00 3.41
1194 1582 7.148523 CGGTACCTTTTCATCCTTACTTTGTAC 60.149 40.741 10.90 0.00 0.00 2.90
1201 1589 3.869832 GAGCGGTACCTTTTCATCCTTAC 59.130 47.826 10.90 0.00 0.00 2.34
1229 1617 8.194104 AGCAATAGTATAACATGGATCGATCTC 58.806 37.037 23.96 14.76 0.00 2.75
1231 1619 8.598924 CAAGCAATAGTATAACATGGATCGATC 58.401 37.037 17.36 17.36 0.00 3.69
1232 1620 8.097038 ACAAGCAATAGTATAACATGGATCGAT 58.903 33.333 0.00 0.00 0.00 3.59
1233 1621 7.441836 ACAAGCAATAGTATAACATGGATCGA 58.558 34.615 0.00 0.00 0.00 3.59
1234 1622 7.384932 TGACAAGCAATAGTATAACATGGATCG 59.615 37.037 0.00 0.00 0.00 3.69
1381 1813 0.909623 AACCGATTCATCTCCGGGTT 59.090 50.000 0.00 0.00 41.06 4.11
1407 4581 1.901591 ACAATGTGTCTTCCTGCTGG 58.098 50.000 2.58 2.58 0.00 4.85
1416 4590 4.394729 ACCAAATACGGAACAATGTGTCT 58.605 39.130 0.00 0.00 0.00 3.41
1443 4617 2.940410 CGAATATTTTACCAGTGCCCGT 59.060 45.455 0.00 0.00 0.00 5.28
1539 4714 3.518705 AGCACATCTTTGAGAGTCTGGAT 59.481 43.478 0.00 0.00 0.00 3.41
1584 4759 2.046892 GGCAAGGCGCTCTCTCAA 60.047 61.111 7.64 0.00 41.91 3.02
1660 4835 1.133637 TGGTAACCAAGGCATGTGTGT 60.134 47.619 0.00 0.00 0.00 3.72
1664 4839 1.341976 GGGATGGTAACCAAGGCATGT 60.342 52.381 0.00 0.00 36.95 3.21
1697 4873 1.904287 AATTTCGTGCAAGTAGGGCA 58.096 45.000 0.00 0.00 39.32 5.36
1706 4882 5.792962 CGAGCAACTTATAAAATTTCGTGCA 59.207 36.000 0.00 0.00 0.00 4.57
2020 5217 2.823829 GAATCGCCATGCCACGACC 61.824 63.158 5.95 0.00 41.76 4.79
2054 5251 4.261578 ACTGAACATGGCAAGAATTTGG 57.738 40.909 0.00 0.00 34.79 3.28
2112 5309 6.321717 ACAAATTATGTTGTTACGGCATGAG 58.678 36.000 0.00 0.00 40.06 2.90
2209 5406 2.094545 CGGCCCTTGATCTTGGAAAAAG 60.095 50.000 0.00 0.00 0.00 2.27
2296 5556 2.352323 GGGGCAGTTTAATCCACGTTTG 60.352 50.000 0.00 0.00 0.00 2.93
2416 5758 2.421529 GGAGGTCGCCATGTTTATTCCT 60.422 50.000 0.00 0.00 0.00 3.36
2685 6027 3.006940 CCAAAGTAAGTGCCGCTGATTA 58.993 45.455 0.00 0.00 0.00 1.75
2728 6070 8.318412 TCATCTACATCTGCTAACCAAAAACTA 58.682 33.333 0.00 0.00 0.00 2.24
2729 6071 7.168219 TCATCTACATCTGCTAACCAAAAACT 58.832 34.615 0.00 0.00 0.00 2.66
2730 6072 7.377766 TCATCTACATCTGCTAACCAAAAAC 57.622 36.000 0.00 0.00 0.00 2.43
2731 6073 7.994425 TTCATCTACATCTGCTAACCAAAAA 57.006 32.000 0.00 0.00 0.00 1.94
2732 6074 7.994425 TTTCATCTACATCTGCTAACCAAAA 57.006 32.000 0.00 0.00 0.00 2.44
2733 6075 7.994425 TTTTCATCTACATCTGCTAACCAAA 57.006 32.000 0.00 0.00 0.00 3.28
2734 6076 7.994425 TTTTTCATCTACATCTGCTAACCAA 57.006 32.000 0.00 0.00 0.00 3.67
2766 6108 7.525688 TCGTTGCTAATTGCTATCATATAGC 57.474 36.000 11.19 11.19 43.37 2.97
2767 6109 9.305925 TCATCGTTGCTAATTGCTATCATATAG 57.694 33.333 0.00 0.00 43.37 1.31
2768 6110 9.822185 ATCATCGTTGCTAATTGCTATCATATA 57.178 29.630 0.00 0.00 43.37 0.86
2769 6111 8.728337 ATCATCGTTGCTAATTGCTATCATAT 57.272 30.769 0.00 0.00 43.37 1.78
2770 6112 9.822185 ATATCATCGTTGCTAATTGCTATCATA 57.178 29.630 0.00 0.00 43.37 2.15
2771 6113 8.728337 ATATCATCGTTGCTAATTGCTATCAT 57.272 30.769 0.00 0.00 43.37 2.45
2772 6114 9.822185 ATATATCATCGTTGCTAATTGCTATCA 57.178 29.630 0.00 0.00 43.37 2.15
2847 6189 3.254060 CTGATTTGACCAGGTACACTCG 58.746 50.000 0.00 0.00 0.00 4.18
2921 6267 0.036388 CCAGGTCCAACACATACGCT 60.036 55.000 0.00 0.00 0.00 5.07
3009 6356 3.730761 CGTCAGCCAAGTGCAGCC 61.731 66.667 0.00 0.00 44.83 4.85
3025 6372 6.207213 CCTGTACAGTAGTATAAGAAAGCCG 58.793 44.000 21.18 0.00 31.84 5.52
3045 6392 1.956477 CACTTTGCAAAGTAGGCCTGT 59.044 47.619 37.19 16.14 46.89 4.00
3196 6543 5.004922 AGAAAGTTCAATCCGTTTGCAAA 57.995 34.783 8.05 8.05 35.16 3.68
3293 6640 2.440409 ACCTGATGGTTGCAGTGAATC 58.560 47.619 0.00 0.00 46.05 2.52
3346 6693 2.936919 TTCATCAACCTCTGCAGTGT 57.063 45.000 14.67 9.69 0.00 3.55
3500 6847 6.919775 TCCTCCATAGAGCTATTAAGAACC 57.080 41.667 0.00 0.00 38.96 3.62
3514 6861 7.756395 ATGATATGTTTTTGCTCCTCCATAG 57.244 36.000 0.00 0.00 0.00 2.23
3515 6862 9.288576 CTAATGATATGTTTTTGCTCCTCCATA 57.711 33.333 0.00 0.00 0.00 2.74
3544 6892 5.047164 TCGTAGCCTATTTGGTTCTTGTACA 60.047 40.000 0.00 0.00 38.35 2.90
3626 6974 4.611355 CGAACTAAAACTGGTGCTGATGTG 60.611 45.833 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.