Multiple sequence alignment - TraesCS5A01G539600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G539600 chr5A 100.000 3388 0 0 1 3388 697754788 697751401 0.000000e+00 6257
1 TraesCS5A01G539600 chr5A 94.769 325 13 1 621 941 697759368 697759044 1.400000e-138 503
2 TraesCS5A01G539600 chr5A 87.819 353 43 0 1693 2045 697762682 697762330 6.760000e-112 414
3 TraesCS5A01G539600 chr5A 85.870 368 44 3 945 1304 697760978 697760611 5.300000e-103 385
4 TraesCS5A01G539600 chr5A 81.972 355 59 5 1698 2050 697764785 697764434 2.560000e-76 296
5 TraesCS5A01G539600 chr5A 86.154 260 35 1 955 1214 697763153 697762895 2.570000e-71 279
6 TraesCS5A01G539600 chr5A 78.189 243 41 8 2140 2372 697760150 697759910 9.800000e-31 145
7 TraesCS5A01G539600 chr6B 98.033 966 12 5 2426 3388 51501633 51500672 0.000000e+00 1672
8 TraesCS5A01G539600 chr6B 97.828 967 14 5 2426 3388 676441153 676440190 0.000000e+00 1663
9 TraesCS5A01G539600 chr6B 97.619 966 11 6 2426 3388 52388645 52387689 0.000000e+00 1646
10 TraesCS5A01G539600 chr6B 97.420 969 11 6 2422 3388 352157260 352158216 0.000000e+00 1639
11 TraesCS5A01G539600 chr6B 95.956 272 11 0 1338 1609 455461041 455461312 3.100000e-120 442
12 TraesCS5A01G539600 chr6B 93.993 283 17 0 1320 1602 120657512 120657794 2.420000e-116 429
13 TraesCS5A01G539600 chrUn 97.725 967 15 5 2425 3388 373409170 373408208 0.000000e+00 1657
14 TraesCS5A01G539600 chrUn 97.526 970 17 5 2422 3388 17482901 17483866 0.000000e+00 1652
15 TraesCS5A01G539600 chr7A 97.824 965 12 6 2426 3388 9174668 9173711 0.000000e+00 1657
16 TraesCS5A01G539600 chr6A 97.518 967 16 6 2426 3388 560423284 560422322 0.000000e+00 1646
17 TraesCS5A01G539600 chr6A 93.418 942 61 1 1 941 24514990 24514049 0.000000e+00 1395
18 TraesCS5A01G539600 chr6A 89.130 322 24 1 620 941 24571343 24571033 1.140000e-104 390
19 TraesCS5A01G539600 chr2B 97.311 967 20 4 2424 3388 695384742 695385704 0.000000e+00 1637
20 TraesCS5A01G539600 chr2B 95.941 271 10 1 1332 1602 86040021 86039752 4.010000e-119 438
21 TraesCS5A01G539600 chr1A 89.619 944 91 6 1 942 7641030 7641968 0.000000e+00 1194
22 TraesCS5A01G539600 chr1A 94.141 495 28 1 1 494 531286845 531286351 0.000000e+00 752
23 TraesCS5A01G539600 chr1A 90.303 330 26 1 618 941 531286304 531285975 8.690000e-116 427
24 TraesCS5A01G539600 chr2A 88.198 949 102 8 1 942 43241413 43242358 0.000000e+00 1123
25 TraesCS5A01G539600 chr2A 85.694 706 90 10 249 951 767740372 767741069 0.000000e+00 734
26 TraesCS5A01G539600 chr2A 87.175 616 75 2 3 614 767698687 767699302 0.000000e+00 697
27 TraesCS5A01G539600 chr2A 97.348 264 7 0 1338 1601 99158158 99157895 1.850000e-122 449
28 TraesCS5A01G539600 chr2A 85.047 321 45 3 620 939 43220764 43221082 1.170000e-84 324
29 TraesCS5A01G539600 chr2A 79.876 323 58 6 621 941 767630525 767630842 2.630000e-56 230
30 TraesCS5A01G539600 chr4D 86.214 943 125 5 1 941 497360652 497361591 0.000000e+00 1016
31 TraesCS5A01G539600 chr4D 92.099 443 27 2 1608 2045 509099303 509098864 4.800000e-173 617
32 TraesCS5A01G539600 chr4D 93.484 399 25 1 945 1342 509099705 509099307 2.910000e-165 592
33 TraesCS5A01G539600 chr4D 89.235 353 38 0 1693 2045 509103098 509102746 3.100000e-120 442
34 TraesCS5A01G539600 chr4D 85.955 356 46 4 953 1304 509101405 509101050 8.870000e-101 377
35 TraesCS5A01G539600 chr4D 88.103 311 17 2 2137 2427 509098717 509098407 5.380000e-93 351
36 TraesCS5A01G539600 chr4D 84.024 338 51 3 1713 2049 509101052 509100717 4.220000e-84 322
37 TraesCS5A01G539600 chr4D 87.308 260 33 0 955 1214 509103565 509103306 7.110000e-77 298
38 TraesCS5A01G539600 chr4D 77.606 259 44 9 2140 2388 509100589 509100335 9.800000e-31 145
39 TraesCS5A01G539600 chr4D 75.385 260 52 8 2123 2372 509104732 509104475 7.680000e-22 115
40 TraesCS5A01G539600 chr5D 81.665 949 147 24 6 941 541398979 541399913 0.000000e+00 763
41 TraesCS5A01G539600 chr2D 97.338 263 7 0 1338 1600 14985362 14985100 6.670000e-122 448
42 TraesCS5A01G539600 chr7B 96.970 264 8 0 1337 1600 8522429 8522692 8.630000e-121 444
43 TraesCS5A01G539600 chr3A 97.318 261 7 0 1339 1599 522717637 522717897 8.630000e-121 444
44 TraesCS5A01G539600 chr3A 76.543 243 45 9 2140 2372 739377785 739377545 4.590000e-24 122
45 TraesCS5A01G539600 chr3B 94.755 286 11 4 1338 1620 401220211 401219927 3.100000e-120 442
46 TraesCS5A01G539600 chr3B 85.359 362 43 5 953 1304 816277976 816277615 1.920000e-97 366
47 TraesCS5A01G539600 chr3B 83.871 341 52 3 1713 2052 816277617 816277279 4.220000e-84 322
48 TraesCS5A01G539600 chr3B 75.510 245 44 13 2140 2372 816277118 816276878 4.620000e-19 106
49 TraesCS5A01G539600 chr4B 88.701 354 40 0 1692 2045 658171090 658171443 1.870000e-117 433
50 TraesCS5A01G539600 chr4B 87.267 322 41 0 953 1274 658172772 658173093 5.340000e-98 368
51 TraesCS5A01G539600 chr4B 88.535 314 19 5 2115 2411 658174492 658174805 6.910000e-97 364
52 TraesCS5A01G539600 chr4B 82.840 338 57 1 1713 2050 658173131 658173467 5.490000e-78 302
53 TraesCS5A01G539600 chr4B 86.923 260 34 0 955 1214 658170625 658170884 3.310000e-75 292
54 TraesCS5A01G539600 chr4B 79.012 243 39 9 2140 2372 658173625 658173865 4.530000e-34 156
55 TraesCS5A01G539600 chr1B 95.880 267 9 2 1338 1603 448334091 448333826 6.720000e-117 431
56 TraesCS5A01G539600 chr3D 83.235 340 56 1 1713 2052 606949501 606949163 9.130000e-81 311
57 TraesCS5A01G539600 chr3D 85.171 263 37 2 953 1213 606952685 606952423 5.570000e-68 268
58 TraesCS5A01G539600 chr3D 75.720 243 47 9 2140 2372 606948999 606948759 9.940000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G539600 chr5A 697751401 697754788 3387 True 6257.000000 6257 100.000000 1 3388 1 chr5A.!!$R1 3387
1 TraesCS5A01G539600 chr5A 697759044 697764785 5741 True 337.000000 503 85.795500 621 2372 6 chr5A.!!$R2 1751
2 TraesCS5A01G539600 chr6B 51500672 51501633 961 True 1672.000000 1672 98.033000 2426 3388 1 chr6B.!!$R1 962
3 TraesCS5A01G539600 chr6B 676440190 676441153 963 True 1663.000000 1663 97.828000 2426 3388 1 chr6B.!!$R3 962
4 TraesCS5A01G539600 chr6B 52387689 52388645 956 True 1646.000000 1646 97.619000 2426 3388 1 chr6B.!!$R2 962
5 TraesCS5A01G539600 chr6B 352157260 352158216 956 False 1639.000000 1639 97.420000 2422 3388 1 chr6B.!!$F2 966
6 TraesCS5A01G539600 chrUn 373408208 373409170 962 True 1657.000000 1657 97.725000 2425 3388 1 chrUn.!!$R1 963
7 TraesCS5A01G539600 chrUn 17482901 17483866 965 False 1652.000000 1652 97.526000 2422 3388 1 chrUn.!!$F1 966
8 TraesCS5A01G539600 chr7A 9173711 9174668 957 True 1657.000000 1657 97.824000 2426 3388 1 chr7A.!!$R1 962
9 TraesCS5A01G539600 chr6A 560422322 560423284 962 True 1646.000000 1646 97.518000 2426 3388 1 chr6A.!!$R3 962
10 TraesCS5A01G539600 chr6A 24514049 24514990 941 True 1395.000000 1395 93.418000 1 941 1 chr6A.!!$R1 940
11 TraesCS5A01G539600 chr2B 695384742 695385704 962 False 1637.000000 1637 97.311000 2424 3388 1 chr2B.!!$F1 964
12 TraesCS5A01G539600 chr1A 7641030 7641968 938 False 1194.000000 1194 89.619000 1 942 1 chr1A.!!$F1 941
13 TraesCS5A01G539600 chr1A 531285975 531286845 870 True 589.500000 752 92.222000 1 941 2 chr1A.!!$R1 940
14 TraesCS5A01G539600 chr2A 43241413 43242358 945 False 1123.000000 1123 88.198000 1 942 1 chr2A.!!$F2 941
15 TraesCS5A01G539600 chr2A 767740372 767741069 697 False 734.000000 734 85.694000 249 951 1 chr2A.!!$F5 702
16 TraesCS5A01G539600 chr2A 767698687 767699302 615 False 697.000000 697 87.175000 3 614 1 chr2A.!!$F4 611
17 TraesCS5A01G539600 chr4D 497360652 497361591 939 False 1016.000000 1016 86.214000 1 941 1 chr4D.!!$F1 940
18 TraesCS5A01G539600 chr4D 509098407 509104732 6325 True 362.111111 617 85.911000 945 2427 9 chr4D.!!$R1 1482
19 TraesCS5A01G539600 chr5D 541398979 541399913 934 False 763.000000 763 81.665000 6 941 1 chr5D.!!$F1 935
20 TraesCS5A01G539600 chr3B 816276878 816277976 1098 True 264.666667 366 81.580000 953 2372 3 chr3B.!!$R2 1419
21 TraesCS5A01G539600 chr4B 658170625 658174805 4180 False 319.166667 433 85.546333 953 2411 6 chr4B.!!$F1 1458
22 TraesCS5A01G539600 chr3D 606948759 606952685 3926 True 230.000000 311 81.375333 953 2372 3 chr3D.!!$R1 1419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 5789 0.390603 TGATTAACCACAGCGTCCCG 60.391 55.0 0.00 0.0 0.00 5.14 F
1050 5858 0.034767 TACCCGCGGAGAAGAAGAGA 60.035 55.0 30.73 0.0 0.00 3.10 F
1065 5873 0.038251 AGAGACGATTCACGCAGCAA 60.038 50.0 0.00 0.0 46.94 3.91 F
2066 6889 0.034089 AGCACCAACCATAGAAGGGC 60.034 55.0 0.00 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 6695 0.034059 ACGACTTTGTCTGCCTGAGG 59.966 55.000 0.00 0.0 0.00 3.86 R
2047 6870 0.034089 GCCCTTCTATGGTTGGTGCT 60.034 55.000 0.00 0.0 0.00 4.40 R
2114 6995 0.249447 GGGAGCAAAACACAGGCAAC 60.249 55.000 0.00 0.0 0.00 4.17 R
3241 10091 2.739704 CGTGTAGACCCGACGCGTA 61.740 63.158 13.97 0.0 43.86 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.757935 TAGTGCCCGATCTACCACCC 60.758 60.000 0.00 0.00 0.00 4.61
30 31 0.690077 ATCTACCACCCGAGAACCCC 60.690 60.000 0.00 0.00 0.00 4.95
69 70 6.840090 TCATAAGGATTTGGGATAGGAACA 57.160 37.500 0.00 0.00 0.00 3.18
106 107 2.089201 GAAAAGTACCATTGGTCGGGG 58.911 52.381 12.68 0.00 37.09 5.73
786 5586 0.744414 CGCCGGTGTTCTGATCCAAT 60.744 55.000 6.91 0.00 0.00 3.16
791 5591 4.645535 CCGGTGTTCTGATCCAATGATAT 58.354 43.478 0.00 0.00 0.00 1.63
803 5603 5.282055 TCCAATGATATCCTCACTCACAC 57.718 43.478 0.00 0.00 36.48 3.82
807 5608 3.033909 TGATATCCTCACTCACACCCAG 58.966 50.000 0.00 0.00 0.00 4.45
852 5660 0.972983 CTCCAGGTCAGTCCGGTGAT 60.973 60.000 0.00 0.00 41.99 3.06
942 5750 2.544277 CCACCGTAGTTCTCGTGACAAA 60.544 50.000 0.00 0.00 0.00 2.83
943 5751 2.470257 CACCGTAGTTCTCGTGACAAAC 59.530 50.000 0.00 0.00 0.00 2.93
944 5752 2.360165 ACCGTAGTTCTCGTGACAAACT 59.640 45.455 1.55 1.55 37.10 2.66
945 5753 2.724690 CCGTAGTTCTCGTGACAAACTG 59.275 50.000 5.56 0.00 35.08 3.16
947 5755 2.604046 AGTTCTCGTGACAAACTGCT 57.396 45.000 0.00 0.00 32.22 4.24
948 5756 2.474816 AGTTCTCGTGACAAACTGCTC 58.525 47.619 0.00 0.00 32.22 4.26
949 5757 2.101582 AGTTCTCGTGACAAACTGCTCT 59.898 45.455 0.00 0.00 32.22 4.09
950 5758 2.423926 TCTCGTGACAAACTGCTCTC 57.576 50.000 0.00 0.00 0.00 3.20
951 5759 1.000163 TCTCGTGACAAACTGCTCTCC 60.000 52.381 0.00 0.00 0.00 3.71
963 5771 1.266175 CTGCTCTCCTGTTTGCAGTTG 59.734 52.381 0.00 0.00 45.31 3.16
964 5772 1.134128 TGCTCTCCTGTTTGCAGTTGA 60.134 47.619 0.00 0.00 41.02 3.18
975 5783 3.641437 TTGCAGTTGATTAACCACAGC 57.359 42.857 0.00 0.00 37.52 4.40
981 5789 0.390603 TGATTAACCACAGCGTCCCG 60.391 55.000 0.00 0.00 0.00 5.14
997 5805 4.415332 CGGACGACGTGGTGGAGG 62.415 72.222 8.32 0.00 37.93 4.30
999 5807 2.987547 GACGACGTGGTGGAGGGA 60.988 66.667 8.32 0.00 0.00 4.20
1010 5818 0.394899 GTGGAGGGAATGAAGGCCAG 60.395 60.000 5.01 0.00 0.00 4.85
1012 5820 1.454663 GAGGGAATGAAGGCCAGCC 60.455 63.158 5.01 0.00 0.00 4.85
1038 5846 0.462047 AATTCTTCCAGCTACCCGCG 60.462 55.000 0.00 0.00 45.59 6.46
1043 5851 3.458163 CCAGCTACCCGCGGAGAA 61.458 66.667 30.73 10.54 45.59 2.87
1049 5857 0.382515 CTACCCGCGGAGAAGAAGAG 59.617 60.000 30.73 8.96 0.00 2.85
1050 5858 0.034767 TACCCGCGGAGAAGAAGAGA 60.035 55.000 30.73 0.00 0.00 3.10
1057 5865 2.159366 GCGGAGAAGAAGAGACGATTCA 60.159 50.000 0.00 0.00 0.00 2.57
1063 5871 0.642800 GAAGAGACGATTCACGCAGC 59.357 55.000 0.00 0.00 46.94 5.25
1065 5873 0.038251 AGAGACGATTCACGCAGCAA 60.038 50.000 0.00 0.00 46.94 3.91
1077 5885 3.437795 CAGCAAGAAGGGCGGCTG 61.438 66.667 9.56 0.00 46.47 4.85
1092 5900 1.153549 GCTGGAAGGCTACGGTCAG 60.154 63.158 0.00 0.00 0.00 3.51
1107 5915 1.060726 GTCAGCTGTTCGTCGTCTCG 61.061 60.000 14.67 0.00 0.00 4.04
1167 5975 2.512515 GCACAGCCACCCGAGATC 60.513 66.667 0.00 0.00 0.00 2.75
1180 5988 1.472376 CCGAGATCAGGAAGACCAAGC 60.472 57.143 1.35 0.00 38.94 4.01
1227 6038 4.631131 TCAGGTATGTAAGATTGCGATGG 58.369 43.478 0.00 0.00 0.00 3.51
1228 6039 3.187227 CAGGTATGTAAGATTGCGATGGC 59.813 47.826 0.00 0.00 40.52 4.40
1286 6109 9.330063 CTTCAGCTTAGTTACAATGGAATGATA 57.670 33.333 0.00 0.00 0.00 2.15
1294 6117 8.650143 AGTTACAATGGAATGATACTTTTGGT 57.350 30.769 0.00 0.00 0.00 3.67
1295 6118 8.739972 AGTTACAATGGAATGATACTTTTGGTC 58.260 33.333 0.00 0.00 0.00 4.02
1296 6119 6.194796 ACAATGGAATGATACTTTTGGTCG 57.805 37.500 0.00 0.00 0.00 4.79
1297 6120 4.900635 ATGGAATGATACTTTTGGTCGC 57.099 40.909 0.00 0.00 0.00 5.19
1298 6121 3.013921 TGGAATGATACTTTTGGTCGCC 58.986 45.455 0.00 0.00 0.00 5.54
1299 6122 3.279434 GGAATGATACTTTTGGTCGCCT 58.721 45.455 0.00 0.00 0.00 5.52
1300 6123 3.312697 GGAATGATACTTTTGGTCGCCTC 59.687 47.826 0.00 0.00 0.00 4.70
1301 6124 3.914426 ATGATACTTTTGGTCGCCTCT 57.086 42.857 0.00 0.00 0.00 3.69
1302 6125 3.695830 TGATACTTTTGGTCGCCTCTT 57.304 42.857 0.00 0.00 0.00 2.85
1303 6126 4.015872 TGATACTTTTGGTCGCCTCTTT 57.984 40.909 0.00 0.00 0.00 2.52
1304 6127 4.394729 TGATACTTTTGGTCGCCTCTTTT 58.605 39.130 0.00 0.00 0.00 2.27
1305 6128 5.553123 TGATACTTTTGGTCGCCTCTTTTA 58.447 37.500 0.00 0.00 0.00 1.52
1306 6129 6.177610 TGATACTTTTGGTCGCCTCTTTTAT 58.822 36.000 0.00 0.00 0.00 1.40
1307 6130 6.657541 TGATACTTTTGGTCGCCTCTTTTATT 59.342 34.615 0.00 0.00 0.00 1.40
1308 6131 7.825270 TGATACTTTTGGTCGCCTCTTTTATTA 59.175 33.333 0.00 0.00 0.00 0.98
1309 6132 8.747538 ATACTTTTGGTCGCCTCTTTTATTAT 57.252 30.769 0.00 0.00 0.00 1.28
1310 6133 7.462571 ACTTTTGGTCGCCTCTTTTATTATT 57.537 32.000 0.00 0.00 0.00 1.40
1311 6134 7.892609 ACTTTTGGTCGCCTCTTTTATTATTT 58.107 30.769 0.00 0.00 0.00 1.40
1312 6135 8.364894 ACTTTTGGTCGCCTCTTTTATTATTTT 58.635 29.630 0.00 0.00 0.00 1.82
1313 6136 8.527567 TTTTGGTCGCCTCTTTTATTATTTTG 57.472 30.769 0.00 0.00 0.00 2.44
1314 6137 5.646606 TGGTCGCCTCTTTTATTATTTTGC 58.353 37.500 0.00 0.00 0.00 3.68
1315 6138 5.041287 GGTCGCCTCTTTTATTATTTTGCC 58.959 41.667 0.00 0.00 0.00 4.52
1316 6139 5.041287 GTCGCCTCTTTTATTATTTTGCCC 58.959 41.667 0.00 0.00 0.00 5.36
1317 6140 4.953579 TCGCCTCTTTTATTATTTTGCCCT 59.046 37.500 0.00 0.00 0.00 5.19
1318 6141 6.038936 GTCGCCTCTTTTATTATTTTGCCCTA 59.961 38.462 0.00 0.00 0.00 3.53
1319 6142 6.038936 TCGCCTCTTTTATTATTTTGCCCTAC 59.961 38.462 0.00 0.00 0.00 3.18
1320 6143 6.039382 CGCCTCTTTTATTATTTTGCCCTACT 59.961 38.462 0.00 0.00 0.00 2.57
1321 6144 7.416326 CGCCTCTTTTATTATTTTGCCCTACTT 60.416 37.037 0.00 0.00 0.00 2.24
1322 6145 8.258007 GCCTCTTTTATTATTTTGCCCTACTTT 58.742 33.333 0.00 0.00 0.00 2.66
1323 6146 9.586435 CCTCTTTTATTATTTTGCCCTACTTTG 57.414 33.333 0.00 0.00 0.00 2.77
1324 6147 9.586435 CTCTTTTATTATTTTGCCCTACTTTGG 57.414 33.333 0.00 0.00 0.00 3.28
1325 6148 9.315363 TCTTTTATTATTTTGCCCTACTTTGGA 57.685 29.630 0.00 0.00 0.00 3.53
1326 6149 9.586435 CTTTTATTATTTTGCCCTACTTTGGAG 57.414 33.333 0.00 0.00 0.00 3.86
1327 6150 7.654022 TTATTATTTTGCCCTACTTTGGAGG 57.346 36.000 0.00 0.00 0.00 4.30
1328 6151 3.825908 ATTTTGCCCTACTTTGGAGGA 57.174 42.857 0.00 0.00 35.99 3.71
1329 6152 3.603965 TTTTGCCCTACTTTGGAGGAA 57.396 42.857 0.00 0.00 35.99 3.36
1330 6153 3.603965 TTTGCCCTACTTTGGAGGAAA 57.396 42.857 0.00 0.00 35.99 3.13
1331 6154 3.603965 TTGCCCTACTTTGGAGGAAAA 57.396 42.857 0.00 0.00 35.99 2.29
1332 6155 3.603965 TGCCCTACTTTGGAGGAAAAA 57.396 42.857 0.00 0.00 35.99 1.94
1333 6156 4.126520 TGCCCTACTTTGGAGGAAAAAT 57.873 40.909 0.00 0.00 35.99 1.82
1334 6157 4.086457 TGCCCTACTTTGGAGGAAAAATC 58.914 43.478 0.00 0.00 35.99 2.17
1335 6158 4.086457 GCCCTACTTTGGAGGAAAAATCA 58.914 43.478 0.00 0.00 35.99 2.57
1336 6159 4.158579 GCCCTACTTTGGAGGAAAAATCAG 59.841 45.833 0.00 0.00 35.99 2.90
1337 6160 4.706962 CCCTACTTTGGAGGAAAAATCAGG 59.293 45.833 0.00 0.00 35.99 3.86
1338 6161 5.325239 CCTACTTTGGAGGAAAAATCAGGT 58.675 41.667 0.00 0.00 35.99 4.00
1339 6162 6.481643 CCTACTTTGGAGGAAAAATCAGGTA 58.518 40.000 0.00 0.00 35.99 3.08
1340 6163 6.374613 CCTACTTTGGAGGAAAAATCAGGTAC 59.625 42.308 0.00 0.00 35.99 3.34
1341 6164 5.953571 ACTTTGGAGGAAAAATCAGGTACT 58.046 37.500 0.00 0.00 43.88 2.73
1342 6165 6.004574 ACTTTGGAGGAAAAATCAGGTACTC 58.995 40.000 0.00 0.00 34.60 2.59
1343 6166 4.569719 TGGAGGAAAAATCAGGTACTCC 57.430 45.455 0.00 0.00 42.50 3.85
1344 6167 3.265995 TGGAGGAAAAATCAGGTACTCCC 59.734 47.826 0.00 0.00 41.71 4.30
1346 6169 4.384318 GGAGGAAAAATCAGGTACTCCCTC 60.384 50.000 0.00 0.00 43.86 4.30
1347 6170 3.523972 AGGAAAAATCAGGTACTCCCTCC 59.476 47.826 0.00 0.00 43.86 4.30
1348 6171 3.265995 GGAAAAATCAGGTACTCCCTCCA 59.734 47.826 0.00 0.00 43.86 3.86
1349 6172 4.079730 GGAAAAATCAGGTACTCCCTCCAT 60.080 45.833 0.00 0.00 43.86 3.41
1350 6173 5.510430 GAAAAATCAGGTACTCCCTCCATT 58.490 41.667 0.00 0.00 43.86 3.16
1351 6174 5.536497 AAAATCAGGTACTCCCTCCATTT 57.464 39.130 0.00 0.00 43.86 2.32
1352 6175 5.536497 AAATCAGGTACTCCCTCCATTTT 57.464 39.130 0.00 0.00 43.86 1.82
1353 6176 5.536497 AATCAGGTACTCCCTCCATTTTT 57.464 39.130 0.00 0.00 43.86 1.94
1354 6177 6.652205 AATCAGGTACTCCCTCCATTTTTA 57.348 37.500 0.00 0.00 43.86 1.52
1355 6178 6.848562 ATCAGGTACTCCCTCCATTTTTAT 57.151 37.500 0.00 0.00 43.86 1.40
1356 6179 6.652205 TCAGGTACTCCCTCCATTTTTATT 57.348 37.500 0.00 0.00 43.86 1.40
1357 6180 7.039722 TCAGGTACTCCCTCCATTTTTATTT 57.960 36.000 0.00 0.00 43.86 1.40
1358 6181 8.165267 TCAGGTACTCCCTCCATTTTTATTTA 57.835 34.615 0.00 0.00 43.86 1.40
1359 6182 8.050930 TCAGGTACTCCCTCCATTTTTATTTAC 58.949 37.037 0.00 0.00 43.86 2.01
1360 6183 8.053355 CAGGTACTCCCTCCATTTTTATTTACT 58.947 37.037 0.00 0.00 43.86 2.24
1361 6184 8.272889 AGGTACTCCCTCCATTTTTATTTACTC 58.727 37.037 0.00 0.00 40.71 2.59
1362 6185 8.272889 GGTACTCCCTCCATTTTTATTTACTCT 58.727 37.037 0.00 0.00 0.00 3.24
1363 6186 9.110502 GTACTCCCTCCATTTTTATTTACTCTG 57.889 37.037 0.00 0.00 0.00 3.35
1364 6187 6.603599 ACTCCCTCCATTTTTATTTACTCTGC 59.396 38.462 0.00 0.00 0.00 4.26
1365 6188 6.489603 TCCCTCCATTTTTATTTACTCTGCA 58.510 36.000 0.00 0.00 0.00 4.41
1366 6189 7.125391 TCCCTCCATTTTTATTTACTCTGCAT 58.875 34.615 0.00 0.00 0.00 3.96
1367 6190 8.278639 TCCCTCCATTTTTATTTACTCTGCATA 58.721 33.333 0.00 0.00 0.00 3.14
1368 6191 9.082313 CCCTCCATTTTTATTTACTCTGCATAT 57.918 33.333 0.00 0.00 0.00 1.78
1383 6206 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
1384 6207 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
1385 6208 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
1410 6233 9.883142 TCAAACTTCATAAAATTTGACCAAGTT 57.117 25.926 7.48 7.48 36.42 2.66
1543 6366 9.930693 TTGTTTATAAGTTTGGTCAAAGTTTGT 57.069 25.926 18.03 11.74 42.21 2.83
1548 6371 6.961359 AAGTTTGGTCAAAGTTTGTAAAGC 57.039 33.333 15.08 6.75 40.04 3.51
1549 6372 6.280855 AGTTTGGTCAAAGTTTGTAAAGCT 57.719 33.333 15.08 11.66 39.89 3.74
1560 6383 6.330278 AAGTTTGTAAAGCTTGACTTTGACC 58.670 36.000 15.19 0.00 45.94 4.02
1561 6384 6.071616 AAGTTTGTAAAGCTTGACTTTGACCA 60.072 34.615 15.19 0.00 45.94 4.02
1562 6385 7.524698 AAGTTTGTAAAGCTTGACTTTGACCAA 60.525 33.333 15.19 0.00 45.94 3.67
1575 6398 5.484173 CTTTGACCAAAGCTAATATGCGA 57.516 39.130 9.25 0.00 40.94 5.10
1576 6399 5.879237 CTTTGACCAAAGCTAATATGCGAA 58.121 37.500 9.25 0.00 40.94 4.70
1577 6400 4.875544 TGACCAAAGCTAATATGCGAAC 57.124 40.909 0.00 0.00 38.13 3.95
1578 6401 4.513442 TGACCAAAGCTAATATGCGAACT 58.487 39.130 0.00 0.00 38.13 3.01
1579 6402 5.666462 TGACCAAAGCTAATATGCGAACTA 58.334 37.500 0.00 0.00 38.13 2.24
1580 6403 6.110033 TGACCAAAGCTAATATGCGAACTAA 58.890 36.000 0.00 0.00 38.13 2.24
1581 6404 6.596106 TGACCAAAGCTAATATGCGAACTAAA 59.404 34.615 0.00 0.00 38.13 1.85
1582 6405 7.282224 TGACCAAAGCTAATATGCGAACTAAAT 59.718 33.333 0.00 0.00 38.13 1.40
1583 6406 8.671384 ACCAAAGCTAATATGCGAACTAAATA 57.329 30.769 0.00 0.00 38.13 1.40
1584 6407 9.116067 ACCAAAGCTAATATGCGAACTAAATAA 57.884 29.630 0.00 0.00 38.13 1.40
1585 6408 9.944663 CCAAAGCTAATATGCGAACTAAATAAA 57.055 29.630 0.00 0.00 38.13 1.40
1594 6417 6.249035 TGCGAACTAAATAAAAACTGAGGG 57.751 37.500 0.00 0.00 0.00 4.30
1595 6418 5.998981 TGCGAACTAAATAAAAACTGAGGGA 59.001 36.000 0.00 0.00 0.00 4.20
1596 6419 6.148811 TGCGAACTAAATAAAAACTGAGGGAG 59.851 38.462 0.00 0.00 0.00 4.30
1597 6420 6.148976 GCGAACTAAATAAAAACTGAGGGAGT 59.851 38.462 0.00 0.00 35.94 3.85
1598 6421 7.332678 GCGAACTAAATAAAAACTGAGGGAGTA 59.667 37.037 0.00 0.00 33.09 2.59
1599 6422 9.379791 CGAACTAAATAAAAACTGAGGGAGTAT 57.620 33.333 0.00 0.00 33.09 2.12
1609 6432 9.856162 AAAAACTGAGGGAGTATTAGTACAAAA 57.144 29.630 0.00 0.00 33.09 2.44
1610 6433 8.843885 AAACTGAGGGAGTATTAGTACAAAAC 57.156 34.615 0.00 0.00 33.09 2.43
1611 6434 7.549147 ACTGAGGGAGTATTAGTACAAAACA 57.451 36.000 0.00 0.00 30.86 2.83
1612 6435 8.147244 ACTGAGGGAGTATTAGTACAAAACAT 57.853 34.615 0.00 0.00 30.86 2.71
1613 6436 8.603304 ACTGAGGGAGTATTAGTACAAAACATT 58.397 33.333 0.00 0.00 30.86 2.71
1614 6437 9.099454 CTGAGGGAGTATTAGTACAAAACATTC 57.901 37.037 0.00 0.00 33.09 2.67
1615 6438 8.822805 TGAGGGAGTATTAGTACAAAACATTCT 58.177 33.333 0.00 0.00 33.09 2.40
1616 6439 9.315525 GAGGGAGTATTAGTACAAAACATTCTC 57.684 37.037 0.00 0.00 33.09 2.87
1617 6440 8.265764 AGGGAGTATTAGTACAAAACATTCTCC 58.734 37.037 0.00 0.00 36.74 3.71
1618 6441 8.044908 GGGAGTATTAGTACAAAACATTCTCCA 58.955 37.037 0.00 0.00 38.48 3.86
1619 6442 9.444600 GGAGTATTAGTACAAAACATTCTCCAA 57.555 33.333 0.00 0.00 37.23 3.53
1621 6444 9.787435 AGTATTAGTACAAAACATTCTCCAACA 57.213 29.630 0.00 0.00 33.09 3.33
1622 6445 9.821662 GTATTAGTACAAAACATTCTCCAACAC 57.178 33.333 0.00 0.00 0.00 3.32
1623 6446 7.867305 TTAGTACAAAACATTCTCCAACACA 57.133 32.000 0.00 0.00 0.00 3.72
1624 6447 6.959639 AGTACAAAACATTCTCCAACACAT 57.040 33.333 0.00 0.00 0.00 3.21
1625 6448 6.970484 AGTACAAAACATTCTCCAACACATC 58.030 36.000 0.00 0.00 0.00 3.06
1626 6449 5.850557 ACAAAACATTCTCCAACACATCA 57.149 34.783 0.00 0.00 0.00 3.07
1627 6450 6.409524 ACAAAACATTCTCCAACACATCAT 57.590 33.333 0.00 0.00 0.00 2.45
1628 6451 6.449698 ACAAAACATTCTCCAACACATCATC 58.550 36.000 0.00 0.00 0.00 2.92
1629 6452 6.040729 ACAAAACATTCTCCAACACATCATCA 59.959 34.615 0.00 0.00 0.00 3.07
1630 6453 6.653526 AAACATTCTCCAACACATCATCAA 57.346 33.333 0.00 0.00 0.00 2.57
1631 6454 5.892160 ACATTCTCCAACACATCATCAAG 57.108 39.130 0.00 0.00 0.00 3.02
1632 6455 5.319453 ACATTCTCCAACACATCATCAAGT 58.681 37.500 0.00 0.00 0.00 3.16
1633 6456 5.182570 ACATTCTCCAACACATCATCAAGTG 59.817 40.000 0.00 0.00 41.40 3.16
1634 6457 3.076621 TCTCCAACACATCATCAAGTGC 58.923 45.455 0.00 0.00 39.30 4.40
1635 6458 3.079578 CTCCAACACATCATCAAGTGCT 58.920 45.455 0.00 0.00 39.30 4.40
1636 6459 4.020307 TCTCCAACACATCATCAAGTGCTA 60.020 41.667 0.00 0.00 39.30 3.49
1637 6460 4.256110 TCCAACACATCATCAAGTGCTAG 58.744 43.478 0.00 0.00 39.30 3.42
1638 6461 3.181503 CCAACACATCATCAAGTGCTAGC 60.182 47.826 8.10 8.10 39.30 3.42
1639 6462 3.623906 ACACATCATCAAGTGCTAGCT 57.376 42.857 17.23 0.00 39.30 3.32
1640 6463 3.268330 ACACATCATCAAGTGCTAGCTG 58.732 45.455 17.23 6.17 39.30 4.24
1641 6464 2.031807 CACATCATCAAGTGCTAGCTGC 59.968 50.000 17.23 8.97 43.25 5.25
1655 6478 5.752098 GCTAGCTGCAAATTAAACTTGTG 57.248 39.130 7.70 0.00 42.31 3.33
1656 6479 4.622740 GCTAGCTGCAAATTAAACTTGTGG 59.377 41.667 7.70 0.00 42.31 4.17
1657 6480 3.392882 AGCTGCAAATTAAACTTGTGGC 58.607 40.909 1.02 7.00 0.00 5.01
1658 6481 2.155539 GCTGCAAATTAAACTTGTGGCG 59.844 45.455 0.00 0.00 0.00 5.69
1659 6482 2.730928 CTGCAAATTAAACTTGTGGCGG 59.269 45.455 0.00 0.00 0.00 6.13
1660 6483 1.459209 GCAAATTAAACTTGTGGCGGC 59.541 47.619 0.00 0.00 0.00 6.53
1661 6484 2.866065 GCAAATTAAACTTGTGGCGGCT 60.866 45.455 11.43 0.00 0.00 5.52
1662 6485 3.389221 CAAATTAAACTTGTGGCGGCTT 58.611 40.909 11.43 0.00 0.00 4.35
1663 6486 3.297830 AATTAAACTTGTGGCGGCTTC 57.702 42.857 11.43 4.06 0.00 3.86
1664 6487 1.681538 TTAAACTTGTGGCGGCTTCA 58.318 45.000 11.43 6.94 0.00 3.02
1665 6488 1.681538 TAAACTTGTGGCGGCTTCAA 58.318 45.000 11.43 14.30 0.00 2.69
1666 6489 0.385390 AAACTTGTGGCGGCTTCAAG 59.615 50.000 29.57 29.57 42.60 3.02
1667 6490 2.075426 AACTTGTGGCGGCTTCAAGC 62.075 55.000 30.41 0.00 41.22 4.01
1668 6491 2.203337 TTGTGGCGGCTTCAAGCT 60.203 55.556 9.83 0.00 41.99 3.74
1669 6492 2.192608 CTTGTGGCGGCTTCAAGCTC 62.193 60.000 24.42 1.36 41.99 4.09
1670 6493 2.359230 GTGGCGGCTTCAAGCTCT 60.359 61.111 9.83 0.00 41.99 4.09
1671 6494 1.968540 GTGGCGGCTTCAAGCTCTT 60.969 57.895 9.83 0.00 41.99 2.85
1672 6495 1.968017 TGGCGGCTTCAAGCTCTTG 60.968 57.895 9.83 3.32 41.99 3.02
1673 6496 2.177778 GCGGCTTCAAGCTCTTGC 59.822 61.111 9.83 5.08 41.99 4.01
1674 6497 2.873288 CGGCTTCAAGCTCTTGCC 59.127 61.111 9.83 9.16 41.99 4.52
1675 6498 2.694760 CGGCTTCAAGCTCTTGCCC 61.695 63.158 9.83 4.75 41.99 5.36
1676 6499 1.303970 GGCTTCAAGCTCTTGCCCT 60.304 57.895 9.83 0.00 41.99 5.19
1677 6500 1.593296 GGCTTCAAGCTCTTGCCCTG 61.593 60.000 9.83 0.00 41.99 4.45
1678 6501 1.881602 CTTCAAGCTCTTGCCCTGC 59.118 57.895 4.81 0.00 40.24 4.85
1679 6502 0.608582 CTTCAAGCTCTTGCCCTGCT 60.609 55.000 4.81 0.00 40.24 4.24
1680 6503 0.692476 TTCAAGCTCTTGCCCTGCTA 59.308 50.000 4.81 0.00 40.24 3.49
1681 6504 0.914644 TCAAGCTCTTGCCCTGCTAT 59.085 50.000 4.81 0.00 40.24 2.97
1682 6505 1.134280 TCAAGCTCTTGCCCTGCTATC 60.134 52.381 4.81 0.00 40.24 2.08
1683 6506 0.179062 AAGCTCTTGCCCTGCTATCG 60.179 55.000 0.00 0.00 40.80 2.92
1684 6507 1.045350 AGCTCTTGCCCTGCTATCGA 61.045 55.000 0.00 0.00 40.80 3.59
1685 6508 0.878086 GCTCTTGCCCTGCTATCGAC 60.878 60.000 0.00 0.00 0.00 4.20
1686 6509 0.749649 CTCTTGCCCTGCTATCGACT 59.250 55.000 0.00 0.00 0.00 4.18
1687 6510 1.137872 CTCTTGCCCTGCTATCGACTT 59.862 52.381 0.00 0.00 0.00 3.01
1688 6511 1.137086 TCTTGCCCTGCTATCGACTTC 59.863 52.381 0.00 0.00 0.00 3.01
1689 6512 1.137872 CTTGCCCTGCTATCGACTTCT 59.862 52.381 0.00 0.00 0.00 2.85
1690 6513 0.747255 TGCCCTGCTATCGACTTCTC 59.253 55.000 0.00 0.00 0.00 2.87
1691 6514 0.747255 GCCCTGCTATCGACTTCTCA 59.253 55.000 0.00 0.00 0.00 3.27
1692 6515 1.137086 GCCCTGCTATCGACTTCTCAA 59.863 52.381 0.00 0.00 0.00 3.02
1693 6516 2.801342 GCCCTGCTATCGACTTCTCAAG 60.801 54.545 0.00 0.00 0.00 3.02
1694 6517 2.428890 CCCTGCTATCGACTTCTCAAGT 59.571 50.000 0.00 0.00 46.38 3.16
1695 6518 3.443037 CCTGCTATCGACTTCTCAAGTG 58.557 50.000 0.00 0.00 43.03 3.16
1696 6519 2.857152 CTGCTATCGACTTCTCAAGTGC 59.143 50.000 0.00 0.00 43.03 4.40
1697 6520 2.493675 TGCTATCGACTTCTCAAGTGCT 59.506 45.455 0.00 0.00 43.03 4.40
1698 6521 2.857152 GCTATCGACTTCTCAAGTGCTG 59.143 50.000 0.00 0.00 43.03 4.41
1699 6522 1.719600 ATCGACTTCTCAAGTGCTGC 58.280 50.000 0.00 0.00 43.03 5.25
1700 6523 0.389025 TCGACTTCTCAAGTGCTGCA 59.611 50.000 0.00 0.00 43.03 4.41
1701 6524 0.510359 CGACTTCTCAAGTGCTGCAC 59.490 55.000 24.59 24.59 43.03 4.57
1721 6544 7.543172 GCTGCACTTTGAATTTTATTCAGATCA 59.457 33.333 0.00 0.00 0.00 2.92
1739 6562 3.876274 TCAGCGCTGGATAGATATTCC 57.124 47.619 35.36 0.00 0.00 3.01
1740 6563 3.435275 TCAGCGCTGGATAGATATTCCT 58.565 45.455 35.36 0.00 0.00 3.36
1742 6565 2.093764 AGCGCTGGATAGATATTCCTGC 60.094 50.000 10.39 11.78 42.56 4.85
1745 6568 2.093764 GCTGGATAGATATTCCTGCGCT 60.094 50.000 9.73 0.00 38.38 5.92
1754 6577 0.392193 ATTCCTGCGCTGTGAAGGAG 60.392 55.000 17.17 0.00 41.08 3.69
1758 6581 0.459237 CTGCGCTGTGAAGGAGGTAG 60.459 60.000 9.73 0.00 0.00 3.18
1760 6583 4.504132 GCTGTGAAGGAGGTAGCG 57.496 61.111 0.00 0.00 0.00 4.26
1769 6592 0.470268 AGGAGGTAGCGGATTCCCTC 60.470 60.000 0.00 3.77 42.28 4.30
1775 6598 2.028125 TAGCGGATTCCCTCTTGGCG 62.028 60.000 0.00 0.00 0.00 5.69
1782 6605 1.541310 TTCCCTCTTGGCGACGATGT 61.541 55.000 0.00 0.00 0.00 3.06
1804 6627 2.484770 CGGAGAACTTGGGACTGAAACA 60.485 50.000 0.00 0.00 0.00 2.83
1810 6633 2.509964 ACTTGGGACTGAAACAAGAGGT 59.490 45.455 10.25 0.00 43.13 3.85
1817 6640 2.887152 ACTGAAACAAGAGGTGATTGCC 59.113 45.455 0.00 0.00 0.00 4.52
1822 6645 1.081892 CAAGAGGTGATTGCCGACAG 58.918 55.000 0.00 0.00 0.00 3.51
1830 6653 0.234106 GATTGCCGACAGATGCATCG 59.766 55.000 20.67 17.08 37.33 3.84
1872 6695 1.070134 TGAACTACTATCCGCCATGCC 59.930 52.381 0.00 0.00 0.00 4.40
1874 6697 0.471971 ACTACTATCCGCCATGCCCT 60.472 55.000 0.00 0.00 0.00 5.19
1877 6700 1.004080 CTATCCGCCATGCCCTCAG 60.004 63.158 0.00 0.00 0.00 3.35
1928 6751 2.122167 GGACGCCGATCTCCTGACT 61.122 63.158 0.00 0.00 0.00 3.41
1931 6754 1.098712 ACGCCGATCTCCTGACTCTC 61.099 60.000 0.00 0.00 0.00 3.20
1949 6772 0.391597 TCGTCCTCCAAGTGAACCAC 59.608 55.000 0.00 0.00 34.10 4.16
1955 6778 0.542333 TCCAAGTGAACCACGTCCAA 59.458 50.000 0.00 0.00 39.64 3.53
1986 6809 2.520536 AAGAGGAACGGCAGCTGGT 61.521 57.895 17.12 0.00 0.00 4.00
2004 6827 3.869473 TTTCCCGTCAAGCCCGTCG 62.869 63.158 0.00 0.00 0.00 5.12
2027 6850 1.263217 GGTGCTTTCGTCGTCAACATT 59.737 47.619 0.00 0.00 0.00 2.71
2036 6859 4.607955 TCGTCGTCAACATTGGAGATATC 58.392 43.478 0.00 0.00 0.00 1.63
2039 6862 5.174035 CGTCGTCAACATTGGAGATATCTTC 59.826 44.000 6.70 5.21 0.00 2.87
2045 6868 5.461032 ACATTGGAGATATCTTCGAGGTC 57.539 43.478 12.08 0.00 23.33 3.85
2046 6869 4.022762 ACATTGGAGATATCTTCGAGGTCG 60.023 45.833 12.08 1.59 41.45 4.79
2063 6886 2.271800 GTCGAGCACCAACCATAGAAG 58.728 52.381 0.00 0.00 0.00 2.85
2064 6887 1.207089 TCGAGCACCAACCATAGAAGG 59.793 52.381 0.00 0.00 0.00 3.46
2065 6888 1.743772 CGAGCACCAACCATAGAAGGG 60.744 57.143 0.00 0.00 0.00 3.95
2066 6889 0.034089 AGCACCAACCATAGAAGGGC 60.034 55.000 0.00 0.00 0.00 5.19
2067 6890 1.376609 GCACCAACCATAGAAGGGCG 61.377 60.000 0.00 0.00 0.00 6.13
2068 6891 0.251916 CACCAACCATAGAAGGGCGA 59.748 55.000 0.00 0.00 0.00 5.54
2069 6892 1.134098 CACCAACCATAGAAGGGCGAT 60.134 52.381 0.00 0.00 0.00 4.58
2070 6893 1.134098 ACCAACCATAGAAGGGCGATG 60.134 52.381 0.00 0.00 0.00 3.84
2071 6894 1.140852 CCAACCATAGAAGGGCGATGA 59.859 52.381 0.00 0.00 32.00 2.92
2073 6896 3.480470 CAACCATAGAAGGGCGATGAAT 58.520 45.455 0.00 0.00 32.00 2.57
2074 6897 3.131709 ACCATAGAAGGGCGATGAATG 57.868 47.619 0.00 0.00 32.00 2.67
2078 6901 4.080919 CCATAGAAGGGCGATGAATGGATA 60.081 45.833 0.00 0.00 35.48 2.59
2080 6903 2.975489 AGAAGGGCGATGAATGGATACT 59.025 45.455 0.00 0.00 37.61 2.12
2083 6906 3.239449 AGGGCGATGAATGGATACTGTA 58.761 45.455 0.00 0.00 37.61 2.74
2090 6971 6.019237 GCGATGAATGGATACTGTATATGCTG 60.019 42.308 0.00 0.00 37.61 4.41
2091 6972 7.038048 CGATGAATGGATACTGTATATGCTGT 58.962 38.462 8.31 8.31 37.61 4.40
2109 6990 7.921786 ATGCTGTATTTTGTAGAACTAAGCA 57.078 32.000 0.00 0.00 0.00 3.91
2110 6991 7.921786 TGCTGTATTTTGTAGAACTAAGCAT 57.078 32.000 0.00 0.00 0.00 3.79
2112 6993 8.236586 TGCTGTATTTTGTAGAACTAAGCATTG 58.763 33.333 0.00 0.00 0.00 2.82
2113 6994 7.218963 GCTGTATTTTGTAGAACTAAGCATTGC 59.781 37.037 0.00 0.00 0.00 3.56
2114 6995 7.240674 TGTATTTTGTAGAACTAAGCATTGCG 58.759 34.615 2.38 0.00 0.00 4.85
2115 6996 5.682943 TTTTGTAGAACTAAGCATTGCGT 57.317 34.783 2.38 2.18 0.00 5.24
2116 6997 5.682943 TTTGTAGAACTAAGCATTGCGTT 57.317 34.783 1.61 1.14 0.00 4.84
2117 6998 4.661993 TGTAGAACTAAGCATTGCGTTG 57.338 40.909 1.61 3.37 0.00 4.10
2121 7026 0.523072 ACTAAGCATTGCGTTGCCTG 59.477 50.000 1.61 1.53 43.83 4.85
2131 7036 1.208642 GCGTTGCCTGTGTTTTGCTC 61.209 55.000 0.00 0.00 0.00 4.26
2132 7037 0.594796 CGTTGCCTGTGTTTTGCTCC 60.595 55.000 0.00 0.00 0.00 4.70
2133 7038 0.249447 GTTGCCTGTGTTTTGCTCCC 60.249 55.000 0.00 0.00 0.00 4.30
2134 7039 1.398958 TTGCCTGTGTTTTGCTCCCC 61.399 55.000 0.00 0.00 0.00 4.81
2135 7040 1.531602 GCCTGTGTTTTGCTCCCCT 60.532 57.895 0.00 0.00 0.00 4.79
2138 7046 1.548582 CCTGTGTTTTGCTCCCCTGAT 60.549 52.381 0.00 0.00 0.00 2.90
2144 7052 1.361204 TTTGCTCCCCTGATGACAGA 58.639 50.000 0.00 0.00 46.03 3.41
2256 9084 1.722034 AACACCTCTGAAGGAGCTCA 58.278 50.000 17.19 0.00 46.67 4.26
2310 9141 1.608717 GACGGTGGAGCATGAGAGGT 61.609 60.000 0.00 0.00 0.00 3.85
2351 9184 1.261238 CGAAGCTGGAGGGGAAGAGT 61.261 60.000 0.00 0.00 0.00 3.24
2400 9242 1.083806 TAGCTGAACTGAATGGCGCG 61.084 55.000 0.00 0.00 0.00 6.86
2406 9248 3.112075 CTGAATGGCGCGTGTCGT 61.112 61.111 8.43 0.00 41.07 4.34
2417 9259 1.268184 CGCGTGTCGTAGCAGGTAATA 60.268 52.381 0.00 0.00 0.00 0.98
2418 9260 2.114825 GCGTGTCGTAGCAGGTAATAC 58.885 52.381 0.00 0.00 0.00 1.89
2639 9481 2.270850 GGCATAACCAGGCCGTCA 59.729 61.111 0.00 0.00 42.67 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.012486 GCAACACTACGGGGTTCTCG 61.012 60.000 0.00 0.00 0.00 4.04
30 31 1.808411 ATGAACAGGGCAACACTACG 58.192 50.000 0.00 0.00 39.74 3.51
69 70 0.473117 TTCGGACACCCTTTCCCTCT 60.473 55.000 0.00 0.00 0.00 3.69
642 2056 5.416013 TGGCGATTTAGAGATAGATCGATGT 59.584 40.000 0.54 0.00 42.82 3.06
643 2057 5.884771 TGGCGATTTAGAGATAGATCGATG 58.115 41.667 0.54 0.00 42.82 3.84
765 5565 2.264794 GATCAGAACACCGGCGGT 59.735 61.111 28.83 28.83 35.62 5.68
771 5571 5.874093 AGGATATCATTGGATCAGAACACC 58.126 41.667 4.83 0.00 34.89 4.16
786 5586 3.033909 CTGGGTGTGAGTGAGGATATCA 58.966 50.000 4.83 0.00 34.79 2.15
791 5591 0.832135 GGACTGGGTGTGAGTGAGGA 60.832 60.000 0.00 0.00 0.00 3.71
803 5603 8.424918 GTGAACCATATATATATCAGGACTGGG 58.575 40.741 16.35 7.63 0.00 4.45
807 5608 9.319143 GCAAGTGAACCATATATATATCAGGAC 57.681 37.037 16.35 11.39 0.00 3.85
942 5750 3.319135 CTGCAAACAGGAGAGCAGT 57.681 52.632 0.00 0.00 46.92 4.40
981 5789 4.065281 CCCTCCACCACGTCGTCC 62.065 72.222 0.00 0.00 0.00 4.79
987 5795 0.392998 CCTTCATTCCCTCCACCACG 60.393 60.000 0.00 0.00 0.00 4.94
997 5805 2.215451 TGGAGGCTGGCCTTCATTCC 62.215 60.000 17.84 13.05 46.26 3.01
999 5807 3.511779 TGGAGGCTGGCCTTCATT 58.488 55.556 17.84 0.00 46.26 2.57
1010 5818 1.747924 GCTGGAAGAATTCTTGGAGGC 59.252 52.381 25.12 17.65 46.56 4.70
1012 5820 4.195416 GGTAGCTGGAAGAATTCTTGGAG 58.805 47.826 25.12 18.97 46.56 3.86
1017 5825 1.134371 GCGGGTAGCTGGAAGAATTCT 60.134 52.381 0.88 0.88 43.77 2.40
1018 5826 1.300481 GCGGGTAGCTGGAAGAATTC 58.700 55.000 2.36 0.00 43.63 2.17
1038 5846 3.430931 CGTGAATCGTCTCTTCTTCTCC 58.569 50.000 0.00 0.00 34.52 3.71
1043 5851 1.734047 GCTGCGTGAATCGTCTCTTCT 60.734 52.381 0.00 0.00 42.13 2.85
1049 5857 0.790207 TTCTTGCTGCGTGAATCGTC 59.210 50.000 0.00 0.00 42.13 4.20
1050 5858 0.792640 CTTCTTGCTGCGTGAATCGT 59.207 50.000 7.40 0.00 42.13 3.73
1063 5871 2.034066 TTCCAGCCGCCCTTCTTG 59.966 61.111 0.00 0.00 0.00 3.02
1065 5873 3.721706 CCTTCCAGCCGCCCTTCT 61.722 66.667 0.00 0.00 0.00 2.85
1073 5881 2.187163 GACCGTAGCCTTCCAGCC 59.813 66.667 0.00 0.00 0.00 4.85
1077 5885 1.153549 CAGCTGACCGTAGCCTTCC 60.154 63.158 8.42 0.00 44.76 3.46
1092 5900 1.512310 CTCCGAGACGACGAACAGC 60.512 63.158 0.00 0.00 35.09 4.40
1107 5915 1.066908 CAGTCGAGCTTCTGATCCTCC 59.933 57.143 8.24 0.00 34.02 4.30
1167 5975 3.547567 CCAGAGCTTGGTCTTCCTG 57.452 57.895 0.00 0.00 42.41 3.86
1227 6038 1.136147 CACAGGCAGCGAAGAATGC 59.864 57.895 0.00 0.00 40.33 3.56
1228 6039 1.136147 GCACAGGCAGCGAAGAATG 59.864 57.895 0.00 0.00 40.72 2.67
1286 6109 7.462571 AATAATAAAAGAGGCGACCAAAAGT 57.537 32.000 0.00 0.00 0.00 2.66
1292 6115 5.041287 GGCAAAATAATAAAAGAGGCGACC 58.959 41.667 0.00 0.00 0.00 4.79
1294 6117 4.953579 AGGGCAAAATAATAAAAGAGGCGA 59.046 37.500 0.00 0.00 0.00 5.54
1295 6118 5.262588 AGGGCAAAATAATAAAAGAGGCG 57.737 39.130 0.00 0.00 0.00 5.52
1296 6119 7.348080 AGTAGGGCAAAATAATAAAAGAGGC 57.652 36.000 0.00 0.00 0.00 4.70
1297 6120 9.586435 CAAAGTAGGGCAAAATAATAAAAGAGG 57.414 33.333 0.00 0.00 0.00 3.69
1298 6121 9.586435 CCAAAGTAGGGCAAAATAATAAAAGAG 57.414 33.333 0.00 0.00 0.00 2.85
1299 6122 9.315363 TCCAAAGTAGGGCAAAATAATAAAAGA 57.685 29.630 0.00 0.00 0.00 2.52
1300 6123 9.586435 CTCCAAAGTAGGGCAAAATAATAAAAG 57.414 33.333 0.00 0.00 0.00 2.27
1301 6124 8.536175 CCTCCAAAGTAGGGCAAAATAATAAAA 58.464 33.333 0.00 0.00 0.00 1.52
1302 6125 7.896496 TCCTCCAAAGTAGGGCAAAATAATAAA 59.104 33.333 0.00 0.00 34.66 1.40
1303 6126 7.415086 TCCTCCAAAGTAGGGCAAAATAATAA 58.585 34.615 0.00 0.00 34.66 1.40
1304 6127 6.975949 TCCTCCAAAGTAGGGCAAAATAATA 58.024 36.000 0.00 0.00 34.66 0.98
1305 6128 5.837829 TCCTCCAAAGTAGGGCAAAATAAT 58.162 37.500 0.00 0.00 34.66 1.28
1306 6129 5.263872 TCCTCCAAAGTAGGGCAAAATAA 57.736 39.130 0.00 0.00 34.66 1.40
1307 6130 4.938575 TCCTCCAAAGTAGGGCAAAATA 57.061 40.909 0.00 0.00 34.66 1.40
1308 6131 3.825908 TCCTCCAAAGTAGGGCAAAAT 57.174 42.857 0.00 0.00 34.66 1.82
1309 6132 3.603965 TTCCTCCAAAGTAGGGCAAAA 57.396 42.857 0.00 0.00 34.66 2.44
1310 6133 3.603965 TTTCCTCCAAAGTAGGGCAAA 57.396 42.857 0.00 0.00 34.66 3.68
1311 6134 3.603965 TTTTCCTCCAAAGTAGGGCAA 57.396 42.857 0.00 0.00 34.66 4.52
1312 6135 3.603965 TTTTTCCTCCAAAGTAGGGCA 57.396 42.857 0.00 0.00 34.66 5.36
1313 6136 4.086457 TGATTTTTCCTCCAAAGTAGGGC 58.914 43.478 0.00 0.00 34.66 5.19
1314 6137 4.706962 CCTGATTTTTCCTCCAAAGTAGGG 59.293 45.833 0.00 0.00 34.66 3.53
1315 6138 5.325239 ACCTGATTTTTCCTCCAAAGTAGG 58.675 41.667 0.00 0.00 35.26 3.18
1316 6139 7.168905 AGTACCTGATTTTTCCTCCAAAGTAG 58.831 38.462 0.00 0.00 0.00 2.57
1317 6140 7.086685 AGTACCTGATTTTTCCTCCAAAGTA 57.913 36.000 0.00 0.00 0.00 2.24
1318 6141 5.953571 AGTACCTGATTTTTCCTCCAAAGT 58.046 37.500 0.00 0.00 0.00 2.66
1319 6142 5.416013 GGAGTACCTGATTTTTCCTCCAAAG 59.584 44.000 0.00 0.00 37.53 2.77
1320 6143 5.321927 GGAGTACCTGATTTTTCCTCCAAA 58.678 41.667 0.00 0.00 37.53 3.28
1321 6144 4.263771 GGGAGTACCTGATTTTTCCTCCAA 60.264 45.833 0.00 0.00 38.98 3.53
1322 6145 3.265995 GGGAGTACCTGATTTTTCCTCCA 59.734 47.826 0.00 0.00 38.98 3.86
1323 6146 3.887352 GGGAGTACCTGATTTTTCCTCC 58.113 50.000 0.00 0.00 36.99 4.30
1336 6159 8.272889 AGAGTAAATAAAAATGGAGGGAGTACC 58.727 37.037 0.00 0.00 40.67 3.34
1337 6160 9.110502 CAGAGTAAATAAAAATGGAGGGAGTAC 57.889 37.037 0.00 0.00 0.00 2.73
1338 6161 7.773690 GCAGAGTAAATAAAAATGGAGGGAGTA 59.226 37.037 0.00 0.00 0.00 2.59
1339 6162 6.603599 GCAGAGTAAATAAAAATGGAGGGAGT 59.396 38.462 0.00 0.00 0.00 3.85
1340 6163 6.603201 TGCAGAGTAAATAAAAATGGAGGGAG 59.397 38.462 0.00 0.00 0.00 4.30
1341 6164 6.489603 TGCAGAGTAAATAAAAATGGAGGGA 58.510 36.000 0.00 0.00 0.00 4.20
1342 6165 6.773976 TGCAGAGTAAATAAAAATGGAGGG 57.226 37.500 0.00 0.00 0.00 4.30
1359 6182 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
1360 6183 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
1361 6184 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
1384 6207 9.883142 AACTTGGTCAAATTTTATGAAGTTTGA 57.117 25.926 14.36 14.36 44.28 2.69
1517 6340 9.930693 ACAAACTTTGACCAAACTTATAAACAA 57.069 25.926 8.55 0.00 0.00 2.83
1522 6345 9.738832 GCTTTACAAACTTTGACCAAACTTATA 57.261 29.630 8.55 0.00 0.00 0.98
1523 6346 8.474831 AGCTTTACAAACTTTGACCAAACTTAT 58.525 29.630 8.55 0.00 0.00 1.73
1524 6347 7.832769 AGCTTTACAAACTTTGACCAAACTTA 58.167 30.769 8.55 0.00 0.00 2.24
1525 6348 6.697395 AGCTTTACAAACTTTGACCAAACTT 58.303 32.000 8.55 0.00 0.00 2.66
1526 6349 6.280855 AGCTTTACAAACTTTGACCAAACT 57.719 33.333 8.55 4.10 0.00 2.66
1527 6350 6.588373 TCAAGCTTTACAAACTTTGACCAAAC 59.412 34.615 8.55 2.42 0.00 2.93
1528 6351 6.588373 GTCAAGCTTTACAAACTTTGACCAAA 59.412 34.615 8.55 4.99 0.00 3.28
1529 6352 6.071616 AGTCAAGCTTTACAAACTTTGACCAA 60.072 34.615 13.07 0.00 0.00 3.67
1530 6353 5.417580 AGTCAAGCTTTACAAACTTTGACCA 59.582 36.000 13.07 0.00 0.00 4.02
1531 6354 5.891451 AGTCAAGCTTTACAAACTTTGACC 58.109 37.500 13.07 0.00 0.00 4.02
1532 6355 7.812309 AAAGTCAAGCTTTACAAACTTTGAC 57.188 32.000 13.07 6.64 44.90 3.18
1535 6358 6.811665 GGTCAAAGTCAAGCTTTACAAACTTT 59.188 34.615 13.07 12.29 44.95 2.66
1536 6359 6.071616 TGGTCAAAGTCAAGCTTTACAAACTT 60.072 34.615 13.07 7.60 44.95 2.66
1537 6360 5.417580 TGGTCAAAGTCAAGCTTTACAAACT 59.582 36.000 13.07 2.11 44.95 2.66
1538 6361 5.646606 TGGTCAAAGTCAAGCTTTACAAAC 58.353 37.500 13.07 5.27 44.95 2.93
1539 6362 5.906113 TGGTCAAAGTCAAGCTTTACAAA 57.094 34.783 13.07 0.00 44.95 2.83
1540 6363 5.906113 TTGGTCAAAGTCAAGCTTTACAA 57.094 34.783 13.07 0.00 44.95 2.41
1541 6364 5.890334 CTTTGGTCAAAGTCAAGCTTTACA 58.110 37.500 13.07 0.00 44.95 2.41
1554 6377 5.414454 AGTTCGCATATTAGCTTTGGTCAAA 59.586 36.000 0.00 0.00 0.00 2.69
1555 6378 4.941263 AGTTCGCATATTAGCTTTGGTCAA 59.059 37.500 0.00 0.00 0.00 3.18
1556 6379 4.513442 AGTTCGCATATTAGCTTTGGTCA 58.487 39.130 0.00 0.00 0.00 4.02
1557 6380 6.598753 TTAGTTCGCATATTAGCTTTGGTC 57.401 37.500 0.00 0.00 0.00 4.02
1558 6381 6.995511 TTTAGTTCGCATATTAGCTTTGGT 57.004 33.333 0.00 0.00 0.00 3.67
1559 6382 9.944663 TTTATTTAGTTCGCATATTAGCTTTGG 57.055 29.630 0.00 0.00 0.00 3.28
1568 6391 8.621286 CCCTCAGTTTTTATTTAGTTCGCATAT 58.379 33.333 0.00 0.00 0.00 1.78
1569 6392 7.825270 TCCCTCAGTTTTTATTTAGTTCGCATA 59.175 33.333 0.00 0.00 0.00 3.14
1570 6393 6.657541 TCCCTCAGTTTTTATTTAGTTCGCAT 59.342 34.615 0.00 0.00 0.00 4.73
1571 6394 5.998981 TCCCTCAGTTTTTATTTAGTTCGCA 59.001 36.000 0.00 0.00 0.00 5.10
1572 6395 6.148976 ACTCCCTCAGTTTTTATTTAGTTCGC 59.851 38.462 0.00 0.00 26.56 4.70
1573 6396 7.668525 ACTCCCTCAGTTTTTATTTAGTTCG 57.331 36.000 0.00 0.00 26.56 3.95
1583 6406 9.856162 TTTTGTACTAATACTCCCTCAGTTTTT 57.144 29.630 0.00 0.00 36.43 1.94
1584 6407 9.281371 GTTTTGTACTAATACTCCCTCAGTTTT 57.719 33.333 0.00 0.00 36.43 2.43
1585 6408 8.434392 TGTTTTGTACTAATACTCCCTCAGTTT 58.566 33.333 0.00 0.00 36.43 2.66
1586 6409 7.970102 TGTTTTGTACTAATACTCCCTCAGTT 58.030 34.615 0.00 0.00 36.43 3.16
1587 6410 7.549147 TGTTTTGTACTAATACTCCCTCAGT 57.451 36.000 0.00 0.00 39.41 3.41
1588 6411 9.099454 GAATGTTTTGTACTAATACTCCCTCAG 57.901 37.037 0.00 0.00 32.00 3.35
1589 6412 8.822805 AGAATGTTTTGTACTAATACTCCCTCA 58.177 33.333 0.00 0.00 32.00 3.86
1590 6413 9.315525 GAGAATGTTTTGTACTAATACTCCCTC 57.684 37.037 0.00 0.00 32.00 4.30
1591 6414 8.265764 GGAGAATGTTTTGTACTAATACTCCCT 58.734 37.037 0.00 0.00 34.74 4.20
1592 6415 8.044908 TGGAGAATGTTTTGTACTAATACTCCC 58.955 37.037 0.00 0.00 38.42 4.30
1593 6416 9.444600 TTGGAGAATGTTTTGTACTAATACTCC 57.555 33.333 0.00 0.00 39.27 3.85
1595 6418 9.787435 TGTTGGAGAATGTTTTGTACTAATACT 57.213 29.630 0.00 0.00 32.00 2.12
1596 6419 9.821662 GTGTTGGAGAATGTTTTGTACTAATAC 57.178 33.333 0.00 0.00 0.00 1.89
1597 6420 9.562408 TGTGTTGGAGAATGTTTTGTACTAATA 57.438 29.630 0.00 0.00 0.00 0.98
1598 6421 8.458573 TGTGTTGGAGAATGTTTTGTACTAAT 57.541 30.769 0.00 0.00 0.00 1.73
1599 6422 7.867305 TGTGTTGGAGAATGTTTTGTACTAA 57.133 32.000 0.00 0.00 0.00 2.24
1600 6423 7.717436 TGATGTGTTGGAGAATGTTTTGTACTA 59.283 33.333 0.00 0.00 0.00 1.82
1601 6424 6.545666 TGATGTGTTGGAGAATGTTTTGTACT 59.454 34.615 0.00 0.00 0.00 2.73
1602 6425 6.734137 TGATGTGTTGGAGAATGTTTTGTAC 58.266 36.000 0.00 0.00 0.00 2.90
1603 6426 6.951062 TGATGTGTTGGAGAATGTTTTGTA 57.049 33.333 0.00 0.00 0.00 2.41
1604 6427 5.850557 TGATGTGTTGGAGAATGTTTTGT 57.149 34.783 0.00 0.00 0.00 2.83
1605 6428 6.448852 TGATGATGTGTTGGAGAATGTTTTG 58.551 36.000 0.00 0.00 0.00 2.44
1606 6429 6.653526 TGATGATGTGTTGGAGAATGTTTT 57.346 33.333 0.00 0.00 0.00 2.43
1607 6430 6.266103 ACTTGATGATGTGTTGGAGAATGTTT 59.734 34.615 0.00 0.00 0.00 2.83
1608 6431 5.771666 ACTTGATGATGTGTTGGAGAATGTT 59.228 36.000 0.00 0.00 0.00 2.71
1609 6432 5.182570 CACTTGATGATGTGTTGGAGAATGT 59.817 40.000 0.00 0.00 0.00 2.71
1610 6433 5.637809 CACTTGATGATGTGTTGGAGAATG 58.362 41.667 0.00 0.00 0.00 2.67
1611 6434 4.157289 GCACTTGATGATGTGTTGGAGAAT 59.843 41.667 0.46 0.00 36.63 2.40
1612 6435 3.503363 GCACTTGATGATGTGTTGGAGAA 59.497 43.478 0.46 0.00 36.63 2.87
1613 6436 3.076621 GCACTTGATGATGTGTTGGAGA 58.923 45.455 0.46 0.00 36.63 3.71
1614 6437 3.079578 AGCACTTGATGATGTGTTGGAG 58.920 45.455 0.46 0.00 36.63 3.86
1615 6438 3.144657 AGCACTTGATGATGTGTTGGA 57.855 42.857 0.46 0.00 36.63 3.53
1616 6439 3.181503 GCTAGCACTTGATGATGTGTTGG 60.182 47.826 10.63 0.00 36.63 3.77
1617 6440 3.688185 AGCTAGCACTTGATGATGTGTTG 59.312 43.478 18.83 0.00 36.63 3.33
1618 6441 3.688185 CAGCTAGCACTTGATGATGTGTT 59.312 43.478 18.83 0.00 36.63 3.32
1619 6442 3.268330 CAGCTAGCACTTGATGATGTGT 58.732 45.455 18.83 0.00 36.63 3.72
1620 6443 2.031807 GCAGCTAGCACTTGATGATGTG 59.968 50.000 18.83 2.54 44.79 3.21
1621 6444 2.286872 GCAGCTAGCACTTGATGATGT 58.713 47.619 18.83 0.00 44.79 3.06
1633 6456 4.622740 CCACAAGTTTAATTTGCAGCTAGC 59.377 41.667 6.62 6.62 45.96 3.42
1634 6457 4.622740 GCCACAAGTTTAATTTGCAGCTAG 59.377 41.667 0.06 0.00 0.00 3.42
1635 6458 4.555262 GCCACAAGTTTAATTTGCAGCTA 58.445 39.130 0.06 0.00 0.00 3.32
1636 6459 3.392882 GCCACAAGTTTAATTTGCAGCT 58.607 40.909 0.06 0.00 0.00 4.24
1637 6460 2.155539 CGCCACAAGTTTAATTTGCAGC 59.844 45.455 0.06 3.17 0.00 5.25
1638 6461 2.730928 CCGCCACAAGTTTAATTTGCAG 59.269 45.455 0.06 0.00 0.00 4.41
1639 6462 2.748605 CCGCCACAAGTTTAATTTGCA 58.251 42.857 0.06 0.00 0.00 4.08
1640 6463 1.459209 GCCGCCACAAGTTTAATTTGC 59.541 47.619 0.06 0.00 0.00 3.68
1641 6464 3.025287 AGCCGCCACAAGTTTAATTTG 57.975 42.857 0.00 0.00 0.00 2.32
1642 6465 3.068873 TGAAGCCGCCACAAGTTTAATTT 59.931 39.130 0.00 0.00 0.00 1.82
1643 6466 2.625790 TGAAGCCGCCACAAGTTTAATT 59.374 40.909 0.00 0.00 0.00 1.40
1644 6467 2.235016 TGAAGCCGCCACAAGTTTAAT 58.765 42.857 0.00 0.00 0.00 1.40
1645 6468 1.681538 TGAAGCCGCCACAAGTTTAA 58.318 45.000 0.00 0.00 0.00 1.52
1646 6469 1.606668 CTTGAAGCCGCCACAAGTTTA 59.393 47.619 14.94 0.00 37.03 2.01
1647 6470 0.385390 CTTGAAGCCGCCACAAGTTT 59.615 50.000 14.94 0.00 37.03 2.66
1648 6471 2.032981 CTTGAAGCCGCCACAAGTT 58.967 52.632 14.94 0.00 37.03 2.66
1649 6472 2.555547 GCTTGAAGCCGCCACAAGT 61.556 57.895 20.58 0.00 41.73 3.16
1650 6473 2.192608 GAGCTTGAAGCCGCCACAAG 62.193 60.000 14.45 17.44 43.77 3.16
1651 6474 2.203337 AGCTTGAAGCCGCCACAA 60.203 55.556 14.45 0.00 43.77 3.33
1652 6475 2.669569 GAGCTTGAAGCCGCCACA 60.670 61.111 14.45 0.00 43.77 4.17
1653 6476 1.968540 AAGAGCTTGAAGCCGCCAC 60.969 57.895 14.45 1.00 43.77 5.01
1654 6477 1.968017 CAAGAGCTTGAAGCCGCCA 60.968 57.895 14.45 0.00 43.77 5.69
1655 6478 2.873288 CAAGAGCTTGAAGCCGCC 59.127 61.111 14.45 3.64 43.77 6.13
1656 6479 2.177778 GCAAGAGCTTGAAGCCGC 59.822 61.111 14.45 8.09 43.77 6.53
1657 6480 2.694760 GGGCAAGAGCTTGAAGCCG 61.695 63.158 14.45 1.31 46.12 5.52
1658 6481 1.303970 AGGGCAAGAGCTTGAAGCC 60.304 57.895 14.45 5.55 43.77 4.35
1659 6482 1.881602 CAGGGCAAGAGCTTGAAGC 59.118 57.895 9.59 9.59 42.93 3.86
1660 6483 0.608582 AGCAGGGCAAGAGCTTGAAG 60.609 55.000 14.04 0.00 42.93 3.02
1661 6484 0.692476 TAGCAGGGCAAGAGCTTGAA 59.308 50.000 14.04 0.00 42.93 2.69
1662 6485 0.914644 ATAGCAGGGCAAGAGCTTGA 59.085 50.000 14.04 0.00 42.93 3.02
1663 6486 1.307097 GATAGCAGGGCAAGAGCTTG 58.693 55.000 5.88 5.88 43.14 4.01
1664 6487 0.179062 CGATAGCAGGGCAAGAGCTT 60.179 55.000 0.00 0.00 41.70 3.74
1665 6488 1.045350 TCGATAGCAGGGCAAGAGCT 61.045 55.000 0.00 0.00 41.70 4.09
1666 6489 0.878086 GTCGATAGCAGGGCAAGAGC 60.878 60.000 0.00 0.00 41.10 4.09
1667 6490 0.749649 AGTCGATAGCAGGGCAAGAG 59.250 55.000 0.00 0.00 0.00 2.85
1668 6491 1.137086 GAAGTCGATAGCAGGGCAAGA 59.863 52.381 0.00 0.00 0.00 3.02
1669 6492 1.137872 AGAAGTCGATAGCAGGGCAAG 59.862 52.381 0.00 0.00 0.00 4.01
1670 6493 1.137086 GAGAAGTCGATAGCAGGGCAA 59.863 52.381 0.00 0.00 0.00 4.52
1671 6494 0.747255 GAGAAGTCGATAGCAGGGCA 59.253 55.000 0.00 0.00 0.00 5.36
1672 6495 0.747255 TGAGAAGTCGATAGCAGGGC 59.253 55.000 0.00 0.00 0.00 5.19
1673 6496 2.428890 ACTTGAGAAGTCGATAGCAGGG 59.571 50.000 0.00 0.00 37.02 4.45
1674 6497 3.443037 CACTTGAGAAGTCGATAGCAGG 58.557 50.000 0.00 0.00 40.46 4.85
1675 6498 2.857152 GCACTTGAGAAGTCGATAGCAG 59.143 50.000 0.00 0.00 40.46 4.24
1676 6499 2.493675 AGCACTTGAGAAGTCGATAGCA 59.506 45.455 0.00 0.00 40.46 3.49
1677 6500 2.857152 CAGCACTTGAGAAGTCGATAGC 59.143 50.000 0.00 0.00 40.46 2.97
1678 6501 2.857152 GCAGCACTTGAGAAGTCGATAG 59.143 50.000 0.00 0.00 40.46 2.08
1679 6502 2.231235 TGCAGCACTTGAGAAGTCGATA 59.769 45.455 0.00 0.00 40.46 2.92
1680 6503 1.001293 TGCAGCACTTGAGAAGTCGAT 59.999 47.619 0.00 0.00 40.46 3.59
1681 6504 0.389025 TGCAGCACTTGAGAAGTCGA 59.611 50.000 0.00 0.00 40.46 4.20
1682 6505 0.510359 GTGCAGCACTTGAGAAGTCG 59.490 55.000 18.92 0.00 40.46 4.18
1683 6506 1.876322 AGTGCAGCACTTGAGAAGTC 58.124 50.000 23.11 0.00 42.59 3.01
1693 6516 6.642131 TCTGAATAAAATTCAAAGTGCAGCAC 59.358 34.615 18.55 18.55 34.10 4.40
1694 6517 6.747125 TCTGAATAAAATTCAAAGTGCAGCA 58.253 32.000 0.00 0.00 0.00 4.41
1695 6518 7.543172 TGATCTGAATAAAATTCAAAGTGCAGC 59.457 33.333 4.09 0.00 0.00 5.25
1696 6519 8.975410 TGATCTGAATAAAATTCAAAGTGCAG 57.025 30.769 4.09 0.00 0.00 4.41
1697 6520 7.543172 GCTGATCTGAATAAAATTCAAAGTGCA 59.457 33.333 3.42 0.00 0.00 4.57
1698 6521 7.253552 CGCTGATCTGAATAAAATTCAAAGTGC 60.254 37.037 3.42 4.76 0.00 4.40
1699 6522 7.253552 GCGCTGATCTGAATAAAATTCAAAGTG 60.254 37.037 0.00 6.97 0.00 3.16
1700 6523 6.749118 GCGCTGATCTGAATAAAATTCAAAGT 59.251 34.615 0.00 0.00 0.00 2.66
1701 6524 6.971184 AGCGCTGATCTGAATAAAATTCAAAG 59.029 34.615 10.39 1.98 0.00 2.77
1702 6525 6.748658 CAGCGCTGATCTGAATAAAATTCAAA 59.251 34.615 33.66 0.00 33.54 2.69
1703 6526 6.260377 CAGCGCTGATCTGAATAAAATTCAA 58.740 36.000 33.66 0.00 33.54 2.69
1704 6527 5.220912 CCAGCGCTGATCTGAATAAAATTCA 60.221 40.000 38.06 2.60 33.54 2.57
1705 6528 5.008019 TCCAGCGCTGATCTGAATAAAATTC 59.992 40.000 38.06 0.00 33.54 2.17
1706 6529 4.883585 TCCAGCGCTGATCTGAATAAAATT 59.116 37.500 38.06 0.00 33.54 1.82
1707 6530 4.454678 TCCAGCGCTGATCTGAATAAAAT 58.545 39.130 38.06 0.00 33.54 1.82
1708 6531 3.872696 TCCAGCGCTGATCTGAATAAAA 58.127 40.909 38.06 1.53 33.54 1.52
1709 6532 3.541996 TCCAGCGCTGATCTGAATAAA 57.458 42.857 38.06 7.35 33.54 1.40
1710 6533 3.758755 ATCCAGCGCTGATCTGAATAA 57.241 42.857 38.06 11.66 33.54 1.40
1711 6534 4.082125 TCTATCCAGCGCTGATCTGAATA 58.918 43.478 38.06 20.83 33.54 1.75
1721 6544 2.093764 GCAGGAATATCTATCCAGCGCT 60.094 50.000 2.64 2.64 39.28 5.92
1739 6562 0.459237 CTACCTCCTTCACAGCGCAG 60.459 60.000 11.47 3.33 0.00 5.18
1740 6563 1.591703 CTACCTCCTTCACAGCGCA 59.408 57.895 11.47 0.00 0.00 6.09
1742 6565 4.504132 GCTACCTCCTTCACAGCG 57.496 61.111 0.00 0.00 0.00 5.18
1745 6568 1.480954 GAATCCGCTACCTCCTTCACA 59.519 52.381 0.00 0.00 0.00 3.58
1754 6577 0.106894 CCAAGAGGGAATCCGCTACC 59.893 60.000 0.00 0.00 42.53 3.18
1758 6581 2.897350 CGCCAAGAGGGAATCCGC 60.897 66.667 0.00 0.00 40.01 5.54
1760 6583 1.521681 CGTCGCCAAGAGGGAATCC 60.522 63.158 0.00 0.00 39.48 3.01
1775 6598 1.630148 CCAAGTTCTCCGACATCGTC 58.370 55.000 0.00 0.00 37.74 4.20
1782 6605 1.712056 TTCAGTCCCAAGTTCTCCGA 58.288 50.000 0.00 0.00 0.00 4.55
1785 6608 4.451900 TCTTGTTTCAGTCCCAAGTTCTC 58.548 43.478 0.00 0.00 37.45 2.87
1804 6627 0.976641 TCTGTCGGCAATCACCTCTT 59.023 50.000 0.00 0.00 0.00 2.85
1810 6633 1.302366 GATGCATCTGTCGGCAATCA 58.698 50.000 19.70 0.00 44.20 2.57
1817 6640 2.280389 CCCCCGATGCATCTGTCG 60.280 66.667 23.73 12.57 37.58 4.35
1832 6655 0.833287 TTCTGATAGACTGCAGCCCC 59.167 55.000 15.27 3.20 32.27 5.80
1835 6658 4.440880 AGTTCATTCTGATAGACTGCAGC 58.559 43.478 15.27 6.85 32.27 5.25
1836 6659 6.804677 AGTAGTTCATTCTGATAGACTGCAG 58.195 40.000 13.48 13.48 0.00 4.41
1845 6668 4.588951 TGGCGGATAGTAGTTCATTCTGAT 59.411 41.667 0.00 0.00 0.00 2.90
1872 6695 0.034059 ACGACTTTGTCTGCCTGAGG 59.966 55.000 0.00 0.00 0.00 3.86
1874 6697 1.581934 CAACGACTTTGTCTGCCTGA 58.418 50.000 0.00 0.00 0.00 3.86
1877 6700 1.282875 GCCAACGACTTTGTCTGCC 59.717 57.895 0.00 0.00 32.71 4.85
1883 6706 0.955919 GGGAGAGGCCAACGACTTTG 60.956 60.000 5.01 0.00 38.95 2.77
1910 6733 2.065906 GAGTCAGGAGATCGGCGTCC 62.066 65.000 6.85 6.88 0.00 4.79
1913 6736 1.652012 GAGAGTCAGGAGATCGGCG 59.348 63.158 0.00 0.00 0.00 6.46
1928 6751 0.966920 GGTTCACTTGGAGGACGAGA 59.033 55.000 0.00 0.00 34.46 4.04
1931 6754 0.944311 CGTGGTTCACTTGGAGGACG 60.944 60.000 0.00 0.00 31.34 4.79
1949 6772 1.817099 GATCTGCAGGCCTTGGACG 60.817 63.158 15.13 0.00 0.00 4.79
1955 6778 0.619832 TCCTCTTGATCTGCAGGCCT 60.620 55.000 15.13 0.00 0.00 5.19
1986 6809 2.031465 GACGGGCTTGACGGGAAA 59.969 61.111 0.00 0.00 35.23 3.13
2004 6827 0.599204 TTGACGACGAAAGCACCCTC 60.599 55.000 0.00 0.00 0.00 4.30
2005 6828 0.878961 GTTGACGACGAAAGCACCCT 60.879 55.000 0.00 0.00 0.00 4.34
2009 6832 1.262950 CCAATGTTGACGACGAAAGCA 59.737 47.619 0.00 0.00 0.00 3.91
2027 6850 3.487120 TCGACCTCGAAGATATCTCCA 57.513 47.619 5.51 0.00 46.30 3.86
2039 6862 2.432628 GGTTGGTGCTCGACCTCG 60.433 66.667 9.04 0.00 46.32 4.63
2045 6868 1.656652 CCTTCTATGGTTGGTGCTCG 58.343 55.000 0.00 0.00 0.00 5.03
2046 6869 2.019156 GCCCTTCTATGGTTGGTGCTC 61.019 57.143 0.00 0.00 0.00 4.26
2047 6870 0.034089 GCCCTTCTATGGTTGGTGCT 60.034 55.000 0.00 0.00 0.00 4.40
2048 6871 1.376609 CGCCCTTCTATGGTTGGTGC 61.377 60.000 0.00 0.00 0.00 5.01
2049 6872 0.251916 TCGCCCTTCTATGGTTGGTG 59.748 55.000 0.00 0.00 0.00 4.17
2050 6873 1.134098 CATCGCCCTTCTATGGTTGGT 60.134 52.381 0.00 0.00 0.00 3.67
2051 6874 1.140852 TCATCGCCCTTCTATGGTTGG 59.859 52.381 0.00 0.00 0.00 3.77
2053 6876 3.480470 CATTCATCGCCCTTCTATGGTT 58.520 45.455 0.00 0.00 0.00 3.67
2054 6877 2.224621 CCATTCATCGCCCTTCTATGGT 60.225 50.000 0.00 0.00 0.00 3.55
2056 6879 3.407424 TCCATTCATCGCCCTTCTATG 57.593 47.619 0.00 0.00 0.00 2.23
2057 6880 4.780021 AGTATCCATTCATCGCCCTTCTAT 59.220 41.667 0.00 0.00 0.00 1.98
2063 6886 2.550830 ACAGTATCCATTCATCGCCC 57.449 50.000 0.00 0.00 0.00 6.13
2064 6887 5.235186 GCATATACAGTATCCATTCATCGCC 59.765 44.000 0.00 0.00 0.00 5.54
2065 6888 6.019237 CAGCATATACAGTATCCATTCATCGC 60.019 42.308 0.00 0.00 0.00 4.58
2066 6889 7.038048 ACAGCATATACAGTATCCATTCATCG 58.962 38.462 0.00 0.00 0.00 3.84
2083 6906 9.613428 TGCTTAGTTCTACAAAATACAGCATAT 57.387 29.630 0.00 0.00 0.00 1.78
2090 6971 7.241376 ACGCAATGCTTAGTTCTACAAAATAC 58.759 34.615 2.94 0.00 0.00 1.89
2091 6972 7.372451 ACGCAATGCTTAGTTCTACAAAATA 57.628 32.000 2.94 0.00 0.00 1.40
2098 6979 2.418628 GGCAACGCAATGCTTAGTTCTA 59.581 45.455 2.94 0.00 45.68 2.10
2105 6986 1.007038 CACAGGCAACGCAATGCTT 60.007 52.632 2.94 0.27 45.68 3.91
2107 6988 0.875474 AAACACAGGCAACGCAATGC 60.875 50.000 0.00 0.00 45.67 3.56
2108 6989 1.258458 CAAAACACAGGCAACGCAATG 59.742 47.619 0.00 0.00 46.39 2.82
2109 6990 1.569708 CAAAACACAGGCAACGCAAT 58.430 45.000 0.00 0.00 46.39 3.56
2110 6991 1.080995 GCAAAACACAGGCAACGCAA 61.081 50.000 0.00 0.00 46.39 4.85
2112 6993 1.208642 GAGCAAAACACAGGCAACGC 61.209 55.000 0.00 0.00 46.39 4.84
2113 6994 0.594796 GGAGCAAAACACAGGCAACG 60.595 55.000 0.00 0.00 46.39 4.10
2114 6995 0.249447 GGGAGCAAAACACAGGCAAC 60.249 55.000 0.00 0.00 0.00 4.17
2115 6996 1.398958 GGGGAGCAAAACACAGGCAA 61.399 55.000 0.00 0.00 0.00 4.52
2116 6997 1.832167 GGGGAGCAAAACACAGGCA 60.832 57.895 0.00 0.00 0.00 4.75
2117 6998 1.531602 AGGGGAGCAAAACACAGGC 60.532 57.895 0.00 0.00 0.00 4.85
2121 7026 1.541588 GTCATCAGGGGAGCAAAACAC 59.458 52.381 0.00 0.00 0.00 3.32
2131 7036 2.482664 CGTCAAGATCTGTCATCAGGGG 60.483 54.545 0.00 0.00 41.59 4.79
2132 7037 2.428530 TCGTCAAGATCTGTCATCAGGG 59.571 50.000 0.00 0.00 41.59 4.45
2133 7038 3.790152 TCGTCAAGATCTGTCATCAGG 57.210 47.619 0.00 0.00 41.59 3.86
2134 7039 3.545475 CGTTCGTCAAGATCTGTCATCAG 59.455 47.826 0.00 0.00 42.54 2.90
2135 7040 3.501950 CGTTCGTCAAGATCTGTCATCA 58.498 45.455 0.00 0.00 0.00 3.07
2138 7046 1.067846 CCCGTTCGTCAAGATCTGTCA 60.068 52.381 0.00 0.00 0.00 3.58
2144 7052 1.475682 GTACCTCCCGTTCGTCAAGAT 59.524 52.381 0.00 0.00 0.00 2.40
2278 9109 4.647615 CCGTCGCATAGGCCTCGG 62.648 72.222 9.68 11.98 42.85 4.63
2281 9112 3.849951 CCACCGTCGCATAGGCCT 61.850 66.667 11.78 11.78 36.38 5.19
2310 9141 0.326264 GCCAAGAAGAGCTCCCTCAA 59.674 55.000 10.93 0.00 40.68 3.02
2351 9184 1.003580 AGCTTCATCCGCTCCAAGAAA 59.996 47.619 0.00 0.00 30.49 2.52
2400 9242 5.747951 AGTAGTATTACCTGCTACGACAC 57.252 43.478 0.00 0.00 44.94 3.67
2406 9248 6.939163 GGTAGTGCTAGTAGTATTACCTGCTA 59.061 42.308 23.94 4.66 39.12 3.49
2417 9259 3.442977 CAGTTTCCGGTAGTGCTAGTAGT 59.557 47.826 0.00 0.00 0.00 2.73
2418 9260 3.181489 CCAGTTTCCGGTAGTGCTAGTAG 60.181 52.174 0.00 0.00 0.00 2.57
2545 9387 2.483745 CGTCGGCTTAGCTCGTGA 59.516 61.111 3.59 0.00 0.00 4.35
2769 9612 1.521681 GCCGTCGGCTTAGCTCATT 60.522 57.895 28.98 0.00 46.69 2.57
3057 9907 4.517075 TCAAAAGAACATGACCGCACATTA 59.483 37.500 0.00 0.00 0.00 1.90
3058 9908 3.317711 TCAAAAGAACATGACCGCACATT 59.682 39.130 0.00 0.00 0.00 2.71
3241 10091 2.739704 CGTGTAGACCCGACGCGTA 61.740 63.158 13.97 0.00 43.86 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.