Multiple sequence alignment - TraesCS5A01G539200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G539200 chr5A 100.000 3396 0 0 1 3396 697624691 697628086 0.000000e+00 6272.0
1 TraesCS5A01G539200 chr5A 97.162 2114 52 6 683 2793 546845988 546848096 0.000000e+00 3565.0
2 TraesCS5A01G539200 chr5A 95.373 2118 90 5 680 2793 640389064 640386951 0.000000e+00 3362.0
3 TraesCS5A01G539200 chr5A 94.378 249 3 2 445 682 697645342 697645590 4.140000e-99 372.0
4 TraesCS5A01G539200 chr5A 98.077 52 1 0 373 424 697645234 697645285 1.300000e-14 91.6
5 TraesCS5A01G539200 chr5A 95.238 42 2 0 552 593 697649630 697649671 2.190000e-07 67.6
6 TraesCS5A01G539200 chr4A 96.952 2723 70 5 683 3396 628881991 628884709 0.000000e+00 4556.0
7 TraesCS5A01G539200 chr7A 96.659 2724 78 4 682 3396 576403831 576406550 0.000000e+00 4514.0
8 TraesCS5A01G539200 chr7A 96.402 2724 74 7 682 3396 658706222 658703514 0.000000e+00 4466.0
9 TraesCS5A01G539200 chr1A 96.250 2720 78 11 683 3396 13813934 13811233 0.000000e+00 4436.0
10 TraesCS5A01G539200 chr1A 96.257 2725 69 13 683 3396 34337446 34340148 0.000000e+00 4436.0
11 TraesCS5A01G539200 chr1A 95.850 2723 83 11 683 3396 566074874 566072173 0.000000e+00 4375.0
12 TraesCS5A01G539200 chr1A 91.358 243 21 0 124 366 500044676 500044434 1.950000e-87 333.0
13 TraesCS5A01G539200 chr2A 95.924 2723 81 11 683 3396 752883172 752880471 0.000000e+00 4386.0
14 TraesCS5A01G539200 chr5D 94.745 2721 84 11 683 3396 356119496 356116828 0.000000e+00 4178.0
15 TraesCS5A01G539200 chr4D 94.360 2748 77 11 682 3396 392724847 392722145 0.000000e+00 4145.0
16 TraesCS5A01G539200 chr7D 94.195 2739 85 11 682 3396 634767842 634770530 0.000000e+00 4109.0
17 TraesCS5A01G539200 chr7D 94.173 2746 77 12 683 3396 538836051 538838745 0.000000e+00 4108.0
18 TraesCS5A01G539200 chr7D 92.787 2745 90 34 682 3396 426837237 426834571 0.000000e+00 3873.0
19 TraesCS5A01G539200 chr3D 93.415 1063 26 2 2340 3396 534218086 534217062 0.000000e+00 1535.0
20 TraesCS5A01G539200 chr6D 95.276 254 7 4 430 682 947889 947640 6.830000e-107 398.0
21 TraesCS5A01G539200 chr6D 95.378 238 10 1 124 361 422318647 422318883 8.900000e-101 377.0
22 TraesCS5A01G539200 chr6D 90.625 128 8 2 1 124 948328 948201 2.100000e-37 167.0
23 TraesCS5A01G539200 chr6D 91.176 68 5 1 366 433 948217 948151 1.300000e-14 91.6
24 TraesCS5A01G539200 chr4B 94.694 245 8 3 127 366 599605982 599605738 3.200000e-100 375.0
25 TraesCS5A01G539200 chr4B 92.245 245 14 3 127 366 599472630 599472386 3.240000e-90 342.0
26 TraesCS5A01G539200 chr4B 86.435 317 7 13 366 682 671832991 671833271 7.070000e-82 315.0
27 TraesCS5A01G539200 chr3A 94.894 235 11 1 127 361 600331493 600331260 1.930000e-97 366.0
28 TraesCS5A01G539200 chr1B 94.515 237 13 0 127 363 18692189 18691953 1.930000e-97 366.0
29 TraesCS5A01G539200 chrUn 96.190 210 3 2 474 682 100220332 100220127 4.200000e-89 339.0
30 TraesCS5A01G539200 chrUn 91.406 128 7 2 1 124 100220503 100220376 4.510000e-39 172.0
31 TraesCS5A01G539200 chrUn 93.478 46 2 1 555 600 100217247 100217203 2.190000e-07 67.6
32 TraesCS5A01G539200 chr6A 92.797 236 12 3 127 362 99790563 99790333 1.510000e-88 337.0
33 TraesCS5A01G539200 chr3B 90.826 218 20 0 130 347 789231755 789231538 3.310000e-75 292.0
34 TraesCS5A01G539200 chr3B 80.612 98 9 5 444 531 623065297 623065200 2.190000e-07 67.6
35 TraesCS5A01G539200 chr2D 90.045 221 22 0 135 355 81439077 81439297 1.540000e-73 287.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G539200 chr5A 697624691 697628086 3395 False 6272.000000 6272 100.000 1 3396 1 chr5A.!!$F2 3395
1 TraesCS5A01G539200 chr5A 546845988 546848096 2108 False 3565.000000 3565 97.162 683 2793 1 chr5A.!!$F1 2110
2 TraesCS5A01G539200 chr5A 640386951 640389064 2113 True 3362.000000 3362 95.373 680 2793 1 chr5A.!!$R1 2113
3 TraesCS5A01G539200 chr4A 628881991 628884709 2718 False 4556.000000 4556 96.952 683 3396 1 chr4A.!!$F1 2713
4 TraesCS5A01G539200 chr7A 576403831 576406550 2719 False 4514.000000 4514 96.659 682 3396 1 chr7A.!!$F1 2714
5 TraesCS5A01G539200 chr7A 658703514 658706222 2708 True 4466.000000 4466 96.402 682 3396 1 chr7A.!!$R1 2714
6 TraesCS5A01G539200 chr1A 13811233 13813934 2701 True 4436.000000 4436 96.250 683 3396 1 chr1A.!!$R1 2713
7 TraesCS5A01G539200 chr1A 34337446 34340148 2702 False 4436.000000 4436 96.257 683 3396 1 chr1A.!!$F1 2713
8 TraesCS5A01G539200 chr1A 566072173 566074874 2701 True 4375.000000 4375 95.850 683 3396 1 chr1A.!!$R3 2713
9 TraesCS5A01G539200 chr2A 752880471 752883172 2701 True 4386.000000 4386 95.924 683 3396 1 chr2A.!!$R1 2713
10 TraesCS5A01G539200 chr5D 356116828 356119496 2668 True 4178.000000 4178 94.745 683 3396 1 chr5D.!!$R1 2713
11 TraesCS5A01G539200 chr4D 392722145 392724847 2702 True 4145.000000 4145 94.360 682 3396 1 chr4D.!!$R1 2714
12 TraesCS5A01G539200 chr7D 634767842 634770530 2688 False 4109.000000 4109 94.195 682 3396 1 chr7D.!!$F2 2714
13 TraesCS5A01G539200 chr7D 538836051 538838745 2694 False 4108.000000 4108 94.173 683 3396 1 chr7D.!!$F1 2713
14 TraesCS5A01G539200 chr7D 426834571 426837237 2666 True 3873.000000 3873 92.787 682 3396 1 chr7D.!!$R1 2714
15 TraesCS5A01G539200 chr3D 534217062 534218086 1024 True 1535.000000 1535 93.415 2340 3396 1 chr3D.!!$R1 1056
16 TraesCS5A01G539200 chr6D 947640 948328 688 True 218.866667 398 92.359 1 682 3 chr6D.!!$R1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 523 0.033109 GGAATGGACCTTTCCCCCTG 60.033 60.0 23.06 0.0 42.01 4.45 F
519 524 0.033109 GAATGGACCTTTCCCCCTGG 60.033 60.0 8.61 0.0 42.01 4.45 F
608 613 0.170561 CCGTTCCTCGATCGACTTGT 59.829 55.0 15.15 0.0 42.86 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 1401 1.421646 CCTTCCAGTGTCAGTCCCTTT 59.578 52.381 0.0 0.0 0.00 3.11 R
2169 2194 2.028294 TGCTCCAGCTTCTTCTTCTCTG 60.028 50.000 0.0 0.0 42.66 3.35 R
2401 2619 8.306038 CAACCAAAATGATCTGAAACCATAGAA 58.694 33.333 0.0 0.0 0.00 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 85 1.134068 GGACCTAGGATTCAAGCCCAC 60.134 57.143 17.98 0.00 0.00 4.61
81 86 1.559682 GACCTAGGATTCAAGCCCACA 59.440 52.381 17.98 0.00 0.00 4.17
113 118 2.350522 CAAGACCATGACACACTAGCC 58.649 52.381 0.00 0.00 0.00 3.93
114 119 1.644509 AGACCATGACACACTAGCCA 58.355 50.000 0.00 0.00 0.00 4.75
115 120 1.552337 AGACCATGACACACTAGCCAG 59.448 52.381 0.00 0.00 0.00 4.85
116 121 0.036010 ACCATGACACACTAGCCAGC 60.036 55.000 0.00 0.00 0.00 4.85
117 122 0.745845 CCATGACACACTAGCCAGCC 60.746 60.000 0.00 0.00 0.00 4.85
118 123 0.036105 CATGACACACTAGCCAGCCA 60.036 55.000 0.00 0.00 0.00 4.75
119 124 0.692476 ATGACACACTAGCCAGCCAA 59.308 50.000 0.00 0.00 0.00 4.52
120 125 0.692476 TGACACACTAGCCAGCCAAT 59.308 50.000 0.00 0.00 0.00 3.16
121 126 1.089920 GACACACTAGCCAGCCAATG 58.910 55.000 0.00 0.00 0.00 2.82
122 127 0.962356 ACACACTAGCCAGCCAATGC 60.962 55.000 0.00 0.00 37.95 3.56
123 128 1.746615 ACACTAGCCAGCCAATGCG 60.747 57.895 0.00 0.00 44.33 4.73
124 129 1.450134 CACTAGCCAGCCAATGCGA 60.450 57.895 0.00 0.00 44.33 5.10
125 130 1.153289 ACTAGCCAGCCAATGCGAG 60.153 57.895 0.00 0.00 44.33 5.03
126 131 1.153289 CTAGCCAGCCAATGCGAGT 60.153 57.895 0.00 0.00 44.33 4.18
127 132 0.104855 CTAGCCAGCCAATGCGAGTA 59.895 55.000 0.00 0.00 44.33 2.59
128 133 0.179084 TAGCCAGCCAATGCGAGTAC 60.179 55.000 0.00 0.00 44.33 2.73
129 134 1.745115 GCCAGCCAATGCGAGTACA 60.745 57.895 0.00 0.00 44.33 2.90
130 135 1.305219 GCCAGCCAATGCGAGTACAA 61.305 55.000 0.00 0.00 44.33 2.41
131 136 0.729116 CCAGCCAATGCGAGTACAAG 59.271 55.000 0.00 0.00 44.33 3.16
132 137 0.729116 CAGCCAATGCGAGTACAAGG 59.271 55.000 0.00 0.00 44.33 3.61
133 138 0.324943 AGCCAATGCGAGTACAAGGT 59.675 50.000 0.00 0.00 44.33 3.50
134 139 1.553248 AGCCAATGCGAGTACAAGGTA 59.447 47.619 0.00 0.00 44.33 3.08
135 140 1.664151 GCCAATGCGAGTACAAGGTAC 59.336 52.381 0.00 0.00 0.00 3.34
136 141 2.277084 CCAATGCGAGTACAAGGTACC 58.723 52.381 2.73 2.73 0.00 3.34
137 142 2.277084 CAATGCGAGTACAAGGTACCC 58.723 52.381 8.74 0.00 0.00 3.69
138 143 1.861982 ATGCGAGTACAAGGTACCCT 58.138 50.000 8.74 0.00 33.87 4.34
139 144 1.180029 TGCGAGTACAAGGTACCCTC 58.820 55.000 8.74 6.67 30.89 4.30
140 145 1.272313 TGCGAGTACAAGGTACCCTCT 60.272 52.381 8.74 0.00 30.89 3.69
141 146 1.134560 GCGAGTACAAGGTACCCTCTG 59.865 57.143 8.74 6.49 30.89 3.35
142 147 1.134560 CGAGTACAAGGTACCCTCTGC 59.865 57.143 8.74 0.00 30.89 4.26
143 148 2.176889 GAGTACAAGGTACCCTCTGCA 58.823 52.381 8.74 0.00 30.89 4.41
144 149 2.166664 GAGTACAAGGTACCCTCTGCAG 59.833 54.545 7.63 7.63 30.89 4.41
145 150 1.900486 GTACAAGGTACCCTCTGCAGT 59.100 52.381 14.67 0.00 30.89 4.40
146 151 2.320681 ACAAGGTACCCTCTGCAGTA 57.679 50.000 14.67 0.00 30.89 2.74
147 152 2.616524 ACAAGGTACCCTCTGCAGTAA 58.383 47.619 14.67 0.00 30.89 2.24
148 153 2.302157 ACAAGGTACCCTCTGCAGTAAC 59.698 50.000 14.67 1.83 30.89 2.50
149 154 1.183549 AGGTACCCTCTGCAGTAACG 58.816 55.000 14.67 2.54 31.25 3.18
150 155 1.180029 GGTACCCTCTGCAGTAACGA 58.820 55.000 14.67 0.00 0.00 3.85
151 156 1.755380 GGTACCCTCTGCAGTAACGAT 59.245 52.381 14.67 0.00 0.00 3.73
152 157 2.223758 GGTACCCTCTGCAGTAACGATC 60.224 54.545 14.67 0.68 0.00 3.69
153 158 0.824759 ACCCTCTGCAGTAACGATCC 59.175 55.000 14.67 0.00 0.00 3.36
154 159 0.824109 CCCTCTGCAGTAACGATCCA 59.176 55.000 14.67 0.00 0.00 3.41
155 160 1.207089 CCCTCTGCAGTAACGATCCAA 59.793 52.381 14.67 0.00 0.00 3.53
156 161 2.544685 CCTCTGCAGTAACGATCCAAG 58.455 52.381 14.67 0.00 0.00 3.61
157 162 2.166459 CCTCTGCAGTAACGATCCAAGA 59.834 50.000 14.67 0.00 0.00 3.02
158 163 3.181471 CCTCTGCAGTAACGATCCAAGAT 60.181 47.826 14.67 0.00 0.00 2.40
159 164 4.038042 CCTCTGCAGTAACGATCCAAGATA 59.962 45.833 14.67 0.00 0.00 1.98
160 165 5.279206 CCTCTGCAGTAACGATCCAAGATAT 60.279 44.000 14.67 0.00 0.00 1.63
161 166 6.161855 TCTGCAGTAACGATCCAAGATATT 57.838 37.500 14.67 0.00 0.00 1.28
162 167 7.284919 TCTGCAGTAACGATCCAAGATATTA 57.715 36.000 14.67 0.00 0.00 0.98
163 168 7.722363 TCTGCAGTAACGATCCAAGATATTAA 58.278 34.615 14.67 0.00 0.00 1.40
164 169 7.867909 TCTGCAGTAACGATCCAAGATATTAAG 59.132 37.037 14.67 0.00 0.00 1.85
165 170 6.423905 TGCAGTAACGATCCAAGATATTAAGC 59.576 38.462 0.00 0.00 0.00 3.09
166 171 6.423905 GCAGTAACGATCCAAGATATTAAGCA 59.576 38.462 0.00 0.00 0.00 3.91
167 172 7.042051 GCAGTAACGATCCAAGATATTAAGCAA 60.042 37.037 0.00 0.00 0.00 3.91
168 173 8.826710 CAGTAACGATCCAAGATATTAAGCAAA 58.173 33.333 0.00 0.00 0.00 3.68
169 174 9.046296 AGTAACGATCCAAGATATTAAGCAAAG 57.954 33.333 0.00 0.00 0.00 2.77
170 175 6.867662 ACGATCCAAGATATTAAGCAAAGG 57.132 37.500 0.00 0.00 0.00 3.11
171 176 6.591935 ACGATCCAAGATATTAAGCAAAGGA 58.408 36.000 0.00 0.00 0.00 3.36
172 177 7.227156 ACGATCCAAGATATTAAGCAAAGGAT 58.773 34.615 0.00 0.00 36.15 3.24
173 178 7.173907 ACGATCCAAGATATTAAGCAAAGGATG 59.826 37.037 0.00 0.00 33.77 3.51
186 191 4.843220 CAAAGGATGCAAGACTTCACTT 57.157 40.909 0.00 0.00 0.00 3.16
187 192 4.791974 CAAAGGATGCAAGACTTCACTTC 58.208 43.478 0.00 0.00 0.00 3.01
188 193 3.777106 AGGATGCAAGACTTCACTTCA 57.223 42.857 0.00 0.00 0.00 3.02
189 194 3.672808 AGGATGCAAGACTTCACTTCAG 58.327 45.455 0.00 0.00 0.00 3.02
190 195 3.072184 AGGATGCAAGACTTCACTTCAGT 59.928 43.478 0.00 0.00 0.00 3.41
191 196 3.817647 GGATGCAAGACTTCACTTCAGTT 59.182 43.478 0.00 0.00 0.00 3.16
192 197 4.320057 GGATGCAAGACTTCACTTCAGTTG 60.320 45.833 0.00 0.00 0.00 3.16
193 198 3.872696 TGCAAGACTTCACTTCAGTTGA 58.127 40.909 0.00 0.00 0.00 3.18
194 199 4.454678 TGCAAGACTTCACTTCAGTTGAT 58.545 39.130 0.00 0.00 0.00 2.57
195 200 4.883585 TGCAAGACTTCACTTCAGTTGATT 59.116 37.500 0.00 0.00 0.00 2.57
196 201 6.054941 TGCAAGACTTCACTTCAGTTGATTA 58.945 36.000 0.00 0.00 0.00 1.75
197 202 6.017934 TGCAAGACTTCACTTCAGTTGATTAC 60.018 38.462 0.00 0.00 0.00 1.89
198 203 6.017934 GCAAGACTTCACTTCAGTTGATTACA 60.018 38.462 0.00 0.00 0.00 2.41
199 204 7.308229 GCAAGACTTCACTTCAGTTGATTACAT 60.308 37.037 0.00 0.00 0.00 2.29
200 205 7.897575 AGACTTCACTTCAGTTGATTACATC 57.102 36.000 0.00 0.00 0.00 3.06
201 206 6.876257 AGACTTCACTTCAGTTGATTACATCC 59.124 38.462 0.00 0.00 0.00 3.51
202 207 6.533730 ACTTCACTTCAGTTGATTACATCCA 58.466 36.000 0.00 0.00 0.00 3.41
203 208 7.170965 ACTTCACTTCAGTTGATTACATCCAT 58.829 34.615 0.00 0.00 0.00 3.41
204 209 6.990341 TCACTTCAGTTGATTACATCCATG 57.010 37.500 0.00 0.00 0.00 3.66
205 210 6.710278 TCACTTCAGTTGATTACATCCATGA 58.290 36.000 0.00 0.00 0.00 3.07
206 211 6.820152 TCACTTCAGTTGATTACATCCATGAG 59.180 38.462 0.00 0.00 0.00 2.90
207 212 6.820152 CACTTCAGTTGATTACATCCATGAGA 59.180 38.462 0.00 0.00 0.00 3.27
208 213 7.335171 CACTTCAGTTGATTACATCCATGAGAA 59.665 37.037 0.00 0.00 0.00 2.87
209 214 7.551974 ACTTCAGTTGATTACATCCATGAGAAG 59.448 37.037 0.00 0.00 34.17 2.85
210 215 5.819379 TCAGTTGATTACATCCATGAGAAGC 59.181 40.000 0.00 0.00 0.00 3.86
211 216 5.587443 CAGTTGATTACATCCATGAGAAGCA 59.413 40.000 0.00 0.00 0.00 3.91
212 217 5.821470 AGTTGATTACATCCATGAGAAGCAG 59.179 40.000 0.00 0.00 29.61 4.24
213 218 4.711399 TGATTACATCCATGAGAAGCAGG 58.289 43.478 0.00 0.00 0.00 4.85
214 219 4.409901 TGATTACATCCATGAGAAGCAGGA 59.590 41.667 0.00 0.00 34.12 3.86
215 220 4.412796 TTACATCCATGAGAAGCAGGAG 57.587 45.455 0.00 0.00 32.91 3.69
216 221 2.475155 ACATCCATGAGAAGCAGGAGA 58.525 47.619 0.00 0.00 32.91 3.71
217 222 3.047115 ACATCCATGAGAAGCAGGAGAT 58.953 45.455 0.00 0.00 32.91 2.75
218 223 3.181453 ACATCCATGAGAAGCAGGAGATG 60.181 47.826 0.00 0.00 39.58 2.90
219 224 2.755686 TCCATGAGAAGCAGGAGATGA 58.244 47.619 0.00 0.00 0.00 2.92
220 225 3.109928 TCCATGAGAAGCAGGAGATGAA 58.890 45.455 0.00 0.00 0.00 2.57
221 226 3.715315 TCCATGAGAAGCAGGAGATGAAT 59.285 43.478 0.00 0.00 0.00 2.57
222 227 4.066490 CCATGAGAAGCAGGAGATGAATC 58.934 47.826 0.00 0.00 0.00 2.52
223 228 4.202377 CCATGAGAAGCAGGAGATGAATCT 60.202 45.833 0.00 0.00 40.50 2.40
224 229 5.369833 CATGAGAAGCAGGAGATGAATCTT 58.630 41.667 0.00 0.00 37.25 2.40
225 230 4.767478 TGAGAAGCAGGAGATGAATCTTG 58.233 43.478 0.00 0.00 37.25 3.02
226 231 4.468868 TGAGAAGCAGGAGATGAATCTTGA 59.531 41.667 0.00 0.00 37.25 3.02
227 232 5.046087 TGAGAAGCAGGAGATGAATCTTGAA 60.046 40.000 0.00 0.00 37.25 2.69
228 233 5.430007 AGAAGCAGGAGATGAATCTTGAAG 58.570 41.667 0.00 0.00 37.25 3.02
229 234 3.543665 AGCAGGAGATGAATCTTGAAGC 58.456 45.455 0.00 0.00 37.25 3.86
230 235 3.200385 AGCAGGAGATGAATCTTGAAGCT 59.800 43.478 0.00 0.51 37.25 3.74
231 236 3.560896 GCAGGAGATGAATCTTGAAGCTC 59.439 47.826 0.00 0.00 37.25 4.09
232 237 4.767478 CAGGAGATGAATCTTGAAGCTCA 58.233 43.478 0.00 0.36 37.25 4.26
233 238 4.571580 CAGGAGATGAATCTTGAAGCTCAC 59.428 45.833 0.00 0.00 37.25 3.51
234 239 4.224594 AGGAGATGAATCTTGAAGCTCACA 59.775 41.667 0.00 0.00 37.25 3.58
235 240 4.940046 GGAGATGAATCTTGAAGCTCACAA 59.060 41.667 6.22 6.22 37.25 3.33
236 241 5.064962 GGAGATGAATCTTGAAGCTCACAAG 59.935 44.000 20.52 20.52 43.92 3.16
237 242 4.395542 AGATGAATCTTGAAGCTCACAAGC 59.604 41.667 21.28 12.49 42.76 4.01
258 263 4.474226 CTTTCAAAAGCAGCGACTACTT 57.526 40.909 0.00 0.00 0.00 2.24
259 264 4.848757 CTTTCAAAAGCAGCGACTACTTT 58.151 39.130 0.00 0.00 35.20 2.66
260 265 5.985781 CTTTCAAAAGCAGCGACTACTTTA 58.014 37.500 5.78 0.00 33.42 1.85
261 266 5.591643 TTCAAAAGCAGCGACTACTTTAG 57.408 39.130 5.78 0.00 33.42 1.85
262 267 3.432252 TCAAAAGCAGCGACTACTTTAGC 59.568 43.478 5.78 0.00 33.42 3.09
263 268 3.320673 AAAGCAGCGACTACTTTAGCT 57.679 42.857 0.00 0.00 41.07 3.32
264 269 3.320673 AAGCAGCGACTACTTTAGCTT 57.679 42.857 0.00 0.00 37.94 3.74
265 270 3.320673 AGCAGCGACTACTTTAGCTTT 57.679 42.857 0.00 0.00 37.94 3.51
266 271 3.665190 AGCAGCGACTACTTTAGCTTTT 58.335 40.909 0.00 0.00 37.94 2.27
267 272 3.433615 AGCAGCGACTACTTTAGCTTTTG 59.566 43.478 0.00 0.00 37.94 2.44
268 273 3.424962 GCAGCGACTACTTTAGCTTTTGG 60.425 47.826 0.00 0.00 37.94 3.28
269 274 2.742589 AGCGACTACTTTAGCTTTTGGC 59.257 45.455 0.00 0.00 36.41 4.52
281 286 2.282407 GCTTTTGGCTGCCATATTTGG 58.718 47.619 24.03 10.63 41.08 3.28
297 302 8.103948 CCATATTTGGCTTTCTATCTTACCTG 57.896 38.462 0.00 0.00 35.85 4.00
298 303 7.939039 CCATATTTGGCTTTCTATCTTACCTGA 59.061 37.037 0.00 0.00 35.85 3.86
299 304 8.778358 CATATTTGGCTTTCTATCTTACCTGAC 58.222 37.037 0.00 0.00 0.00 3.51
300 305 4.386867 TGGCTTTCTATCTTACCTGACG 57.613 45.455 0.00 0.00 0.00 4.35
301 306 3.767673 TGGCTTTCTATCTTACCTGACGT 59.232 43.478 0.00 0.00 0.00 4.34
302 307 4.222145 TGGCTTTCTATCTTACCTGACGTT 59.778 41.667 0.00 0.00 0.00 3.99
303 308 5.419788 TGGCTTTCTATCTTACCTGACGTTA 59.580 40.000 0.00 0.00 0.00 3.18
304 309 6.097839 TGGCTTTCTATCTTACCTGACGTTAT 59.902 38.462 0.00 0.00 0.00 1.89
305 310 6.985059 GGCTTTCTATCTTACCTGACGTTATT 59.015 38.462 0.00 0.00 0.00 1.40
306 311 7.494952 GGCTTTCTATCTTACCTGACGTTATTT 59.505 37.037 0.00 0.00 0.00 1.40
307 312 8.328864 GCTTTCTATCTTACCTGACGTTATTTG 58.671 37.037 0.00 0.00 0.00 2.32
308 313 9.367444 CTTTCTATCTTACCTGACGTTATTTGT 57.633 33.333 0.00 0.00 0.00 2.83
312 317 9.408069 CTATCTTACCTGACGTTATTTGTATCC 57.592 37.037 0.00 0.00 0.00 2.59
313 318 6.576185 TCTTACCTGACGTTATTTGTATCCC 58.424 40.000 0.00 0.00 0.00 3.85
314 319 4.829872 ACCTGACGTTATTTGTATCCCA 57.170 40.909 0.00 0.00 0.00 4.37
315 320 4.766375 ACCTGACGTTATTTGTATCCCAG 58.234 43.478 0.00 0.00 0.00 4.45
316 321 4.468510 ACCTGACGTTATTTGTATCCCAGA 59.531 41.667 0.00 0.00 0.00 3.86
317 322 5.130477 ACCTGACGTTATTTGTATCCCAGAT 59.870 40.000 0.00 0.00 0.00 2.90
318 323 5.696724 CCTGACGTTATTTGTATCCCAGATC 59.303 44.000 0.00 0.00 0.00 2.75
319 324 6.463049 CCTGACGTTATTTGTATCCCAGATCT 60.463 42.308 0.00 0.00 0.00 2.75
320 325 6.884832 TGACGTTATTTGTATCCCAGATCTT 58.115 36.000 0.00 0.00 0.00 2.40
321 326 6.761242 TGACGTTATTTGTATCCCAGATCTTG 59.239 38.462 0.00 0.00 0.00 3.02
322 327 6.650120 ACGTTATTTGTATCCCAGATCTTGT 58.350 36.000 0.00 0.00 0.00 3.16
323 328 7.110155 ACGTTATTTGTATCCCAGATCTTGTT 58.890 34.615 0.00 0.00 0.00 2.83
324 329 7.065803 ACGTTATTTGTATCCCAGATCTTGTTG 59.934 37.037 0.00 0.00 0.00 3.33
325 330 7.065803 CGTTATTTGTATCCCAGATCTTGTTGT 59.934 37.037 0.00 0.00 0.00 3.32
326 331 8.739972 GTTATTTGTATCCCAGATCTTGTTGTT 58.260 33.333 0.00 0.00 0.00 2.83
327 332 9.967451 TTATTTGTATCCCAGATCTTGTTGTTA 57.033 29.630 0.00 0.00 0.00 2.41
329 334 8.877864 TTTGTATCCCAGATCTTGTTGTTATT 57.122 30.769 0.00 0.00 0.00 1.40
330 335 8.877864 TTGTATCCCAGATCTTGTTGTTATTT 57.122 30.769 0.00 0.00 0.00 1.40
331 336 9.967451 TTGTATCCCAGATCTTGTTGTTATTTA 57.033 29.630 0.00 0.00 0.00 1.40
332 337 9.967451 TGTATCCCAGATCTTGTTGTTATTTAA 57.033 29.630 0.00 0.00 0.00 1.52
335 340 8.934023 TCCCAGATCTTGTTGTTATTTAAGTT 57.066 30.769 0.00 0.00 0.00 2.66
342 347 9.908152 ATCTTGTTGTTATTTAAGTTAAGTGGC 57.092 29.630 1.14 0.00 0.00 5.01
343 348 9.127277 TCTTGTTGTTATTTAAGTTAAGTGGCT 57.873 29.630 1.14 0.00 0.00 4.75
344 349 9.744468 CTTGTTGTTATTTAAGTTAAGTGGCTT 57.256 29.630 1.14 0.00 0.00 4.35
346 351 9.738832 TGTTGTTATTTAAGTTAAGTGGCTTTC 57.261 29.630 1.14 0.00 0.00 2.62
347 352 9.738832 GTTGTTATTTAAGTTAAGTGGCTTTCA 57.261 29.630 1.14 0.00 0.00 2.69
348 353 9.738832 TTGTTATTTAAGTTAAGTGGCTTTCAC 57.261 29.630 1.14 0.00 46.39 3.18
355 360 4.920828 GTGGCTTTCACCCCTCAA 57.079 55.556 0.00 0.00 40.39 3.02
356 361 3.125520 GTGGCTTTCACCCCTCAAA 57.874 52.632 0.00 0.00 40.39 2.69
357 362 1.408969 GTGGCTTTCACCCCTCAAAA 58.591 50.000 0.00 0.00 40.39 2.44
358 363 1.760029 GTGGCTTTCACCCCTCAAAAA 59.240 47.619 0.00 0.00 40.39 1.94
403 408 0.676736 GCGTGGGGATTGTTTGGAAA 59.323 50.000 0.00 0.00 0.00 3.13
404 409 1.069358 GCGTGGGGATTGTTTGGAAAA 59.931 47.619 0.00 0.00 0.00 2.29
416 421 5.238006 TGTTTGGAAAAGTAAGGTGTTCG 57.762 39.130 0.00 0.00 0.00 3.95
426 431 1.111277 AAGGTGTTCGCTGCCTTTTT 58.889 45.000 0.00 0.00 39.36 1.94
427 432 0.385390 AGGTGTTCGCTGCCTTTTTG 59.615 50.000 0.00 0.00 0.00 2.44
428 433 0.102300 GGTGTTCGCTGCCTTTTTGT 59.898 50.000 0.00 0.00 0.00 2.83
429 434 1.477105 GTGTTCGCTGCCTTTTTGTC 58.523 50.000 0.00 0.00 0.00 3.18
431 436 1.748493 TGTTCGCTGCCTTTTTGTCTT 59.252 42.857 0.00 0.00 0.00 3.01
432 437 2.946329 TGTTCGCTGCCTTTTTGTCTTA 59.054 40.909 0.00 0.00 0.00 2.10
433 438 3.242936 TGTTCGCTGCCTTTTTGTCTTAC 60.243 43.478 0.00 0.00 0.00 2.34
434 439 2.566913 TCGCTGCCTTTTTGTCTTACA 58.433 42.857 0.00 0.00 0.00 2.41
435 440 2.548057 TCGCTGCCTTTTTGTCTTACAG 59.452 45.455 0.00 0.00 0.00 2.74
436 441 2.290641 CGCTGCCTTTTTGTCTTACAGT 59.709 45.455 0.00 0.00 0.00 3.55
437 442 3.632189 GCTGCCTTTTTGTCTTACAGTG 58.368 45.455 0.00 0.00 0.00 3.66
438 443 3.315191 GCTGCCTTTTTGTCTTACAGTGA 59.685 43.478 0.00 0.00 0.00 3.41
439 444 4.202010 GCTGCCTTTTTGTCTTACAGTGAA 60.202 41.667 0.00 0.00 0.00 3.18
440 445 5.243426 TGCCTTTTTGTCTTACAGTGAAC 57.757 39.130 0.00 0.00 0.00 3.18
441 446 4.947388 TGCCTTTTTGTCTTACAGTGAACT 59.053 37.500 0.00 0.00 0.00 3.01
442 447 6.116806 TGCCTTTTTGTCTTACAGTGAACTA 58.883 36.000 0.00 0.00 0.00 2.24
443 448 6.037830 TGCCTTTTTGTCTTACAGTGAACTAC 59.962 38.462 0.00 0.00 0.00 2.73
444 449 6.646636 CCTTTTTGTCTTACAGTGAACTACG 58.353 40.000 0.00 0.00 0.00 3.51
445 450 6.257193 CCTTTTTGTCTTACAGTGAACTACGT 59.743 38.462 0.00 0.00 0.00 3.57
446 451 7.436080 CCTTTTTGTCTTACAGTGAACTACGTA 59.564 37.037 0.00 0.00 0.00 3.57
447 452 7.919313 TTTTGTCTTACAGTGAACTACGTAG 57.081 36.000 20.97 20.97 0.00 3.51
450 455 7.031226 TGTCTTACAGTGAACTACGTAGTTT 57.969 36.000 34.71 23.46 45.84 2.66
451 456 7.483307 TGTCTTACAGTGAACTACGTAGTTTT 58.517 34.615 34.71 22.82 45.84 2.43
452 457 7.645340 TGTCTTACAGTGAACTACGTAGTTTTC 59.355 37.037 34.71 28.43 45.84 2.29
453 458 7.645340 GTCTTACAGTGAACTACGTAGTTTTCA 59.355 37.037 34.71 27.59 45.84 2.69
454 459 8.190122 TCTTACAGTGAACTACGTAGTTTTCAA 58.810 33.333 34.71 22.23 45.84 2.69
455 460 8.700722 TTACAGTGAACTACGTAGTTTTCAAA 57.299 30.769 34.71 22.54 45.84 2.69
456 461 7.781548 ACAGTGAACTACGTAGTTTTCAAAT 57.218 32.000 34.71 20.71 45.84 2.32
457 462 7.848491 ACAGTGAACTACGTAGTTTTCAAATC 58.152 34.615 34.71 23.17 45.84 2.17
458 463 7.709613 ACAGTGAACTACGTAGTTTTCAAATCT 59.290 33.333 34.71 21.50 45.84 2.40
459 464 8.004344 CAGTGAACTACGTAGTTTTCAAATCTG 58.996 37.037 34.71 26.37 45.84 2.90
460 465 7.924412 AGTGAACTACGTAGTTTTCAAATCTGA 59.076 33.333 34.71 7.75 45.84 3.27
461 466 8.002665 GTGAACTACGTAGTTTTCAAATCTGAC 58.997 37.037 34.71 20.50 45.84 3.51
462 467 6.686130 ACTACGTAGTTTTCAAATCTGACG 57.314 37.500 22.45 0.00 37.78 4.35
463 468 6.211515 ACTACGTAGTTTTCAAATCTGACGT 58.788 36.000 22.45 14.59 37.78 4.34
464 469 5.324739 ACGTAGTTTTCAAATCTGACGTG 57.675 39.130 0.00 0.00 37.78 4.49
465 470 4.210537 ACGTAGTTTTCAAATCTGACGTGG 59.789 41.667 0.00 0.00 37.78 4.94
466 471 3.626028 AGTTTTCAAATCTGACGTGGC 57.374 42.857 0.00 0.00 0.00 5.01
467 472 2.948979 AGTTTTCAAATCTGACGTGGCA 59.051 40.909 0.00 0.00 0.00 4.92
468 473 3.003689 AGTTTTCAAATCTGACGTGGCAG 59.996 43.478 0.00 0.00 37.24 4.85
469 474 0.874390 TTCAAATCTGACGTGGCAGC 59.126 50.000 0.00 0.00 35.86 5.25
470 475 1.133253 CAAATCTGACGTGGCAGCG 59.867 57.895 0.00 7.71 35.86 5.18
471 476 2.034879 AAATCTGACGTGGCAGCGG 61.035 57.895 12.66 0.37 35.86 5.52
486 491 2.509336 CGGCCTTGCGTCGAGATT 60.509 61.111 0.00 0.00 0.00 2.40
487 492 2.100631 CGGCCTTGCGTCGAGATTT 61.101 57.895 0.00 0.00 0.00 2.17
488 493 1.716172 GGCCTTGCGTCGAGATTTC 59.284 57.895 0.00 0.00 0.00 2.17
489 494 1.019278 GGCCTTGCGTCGAGATTTCA 61.019 55.000 0.00 0.00 0.00 2.69
490 495 1.009829 GCCTTGCGTCGAGATTTCAT 58.990 50.000 0.00 0.00 0.00 2.57
491 496 1.267732 GCCTTGCGTCGAGATTTCATG 60.268 52.381 0.00 0.00 0.00 3.07
492 497 2.002586 CCTTGCGTCGAGATTTCATGT 58.997 47.619 0.00 0.00 0.00 3.21
493 498 3.186909 CCTTGCGTCGAGATTTCATGTA 58.813 45.455 0.00 0.00 0.00 2.29
494 499 3.616821 CCTTGCGTCGAGATTTCATGTAA 59.383 43.478 0.00 0.00 0.00 2.41
495 500 4.492570 CCTTGCGTCGAGATTTCATGTAAC 60.493 45.833 0.00 0.00 0.00 2.50
496 501 2.596862 TGCGTCGAGATTTCATGTAACG 59.403 45.455 0.00 0.00 0.00 3.18
497 502 2.034842 GCGTCGAGATTTCATGTAACGG 60.035 50.000 0.00 0.00 0.00 4.44
498 503 3.176708 CGTCGAGATTTCATGTAACGGT 58.823 45.455 0.00 0.00 0.00 4.83
499 504 3.001070 CGTCGAGATTTCATGTAACGGTG 60.001 47.826 0.00 0.00 0.00 4.94
500 505 3.306166 GTCGAGATTTCATGTAACGGTGG 59.694 47.826 0.00 0.00 0.00 4.61
501 506 3.193903 TCGAGATTTCATGTAACGGTGGA 59.806 43.478 0.00 0.00 0.00 4.02
502 507 3.930229 CGAGATTTCATGTAACGGTGGAA 59.070 43.478 0.00 0.00 0.00 3.53
503 508 4.570772 CGAGATTTCATGTAACGGTGGAAT 59.429 41.667 0.00 0.00 0.00 3.01
504 509 5.502382 CGAGATTTCATGTAACGGTGGAATG 60.502 44.000 0.00 0.00 0.00 2.67
505 510 4.640201 AGATTTCATGTAACGGTGGAATGG 59.360 41.667 0.00 0.00 0.00 3.16
506 511 3.704800 TTCATGTAACGGTGGAATGGA 57.295 42.857 0.00 0.00 0.00 3.41
507 512 2.980568 TCATGTAACGGTGGAATGGAC 58.019 47.619 0.00 0.00 0.00 4.02
508 513 2.014128 CATGTAACGGTGGAATGGACC 58.986 52.381 0.00 0.00 0.00 4.46
509 514 1.354101 TGTAACGGTGGAATGGACCT 58.646 50.000 0.00 0.00 0.00 3.85
510 515 1.700739 TGTAACGGTGGAATGGACCTT 59.299 47.619 0.00 0.00 0.00 3.50
511 516 2.106857 TGTAACGGTGGAATGGACCTTT 59.893 45.455 0.00 0.00 0.00 3.11
512 517 1.905637 AACGGTGGAATGGACCTTTC 58.094 50.000 10.93 10.93 0.00 2.62
513 518 0.037734 ACGGTGGAATGGACCTTTCC 59.962 55.000 25.61 25.61 42.52 3.13
514 519 0.679960 CGGTGGAATGGACCTTTCCC 60.680 60.000 27.95 20.72 42.01 3.97
515 520 0.324368 GGTGGAATGGACCTTTCCCC 60.324 60.000 27.95 24.16 42.01 4.81
516 521 0.324368 GTGGAATGGACCTTTCCCCC 60.324 60.000 27.95 18.31 42.01 5.40
517 522 0.479589 TGGAATGGACCTTTCCCCCT 60.480 55.000 27.95 0.00 42.01 4.79
518 523 0.033109 GGAATGGACCTTTCCCCCTG 60.033 60.000 23.06 0.00 42.01 4.45
519 524 0.033109 GAATGGACCTTTCCCCCTGG 60.033 60.000 8.61 0.00 42.01 4.45
520 525 2.168272 AATGGACCTTTCCCCCTGGC 62.168 60.000 0.00 0.00 42.01 4.85
521 526 2.941583 GGACCTTTCCCCCTGGCT 60.942 66.667 0.00 0.00 35.57 4.75
522 527 2.356667 GACCTTTCCCCCTGGCTG 59.643 66.667 0.00 0.00 0.00 4.85
523 528 2.121506 ACCTTTCCCCCTGGCTGA 60.122 61.111 0.00 0.00 0.00 4.26
524 529 2.356667 CCTTTCCCCCTGGCTGAC 59.643 66.667 0.00 0.00 0.00 3.51
525 530 2.045926 CTTTCCCCCTGGCTGACG 60.046 66.667 0.00 0.00 0.00 4.35
526 531 2.852075 TTTCCCCCTGGCTGACGT 60.852 61.111 0.00 0.00 0.00 4.34
527 532 2.411765 CTTTCCCCCTGGCTGACGTT 62.412 60.000 0.00 0.00 0.00 3.99
528 533 2.406002 TTTCCCCCTGGCTGACGTTC 62.406 60.000 0.00 0.00 0.00 3.95
529 534 4.760047 CCCCCTGGCTGACGTTCG 62.760 72.222 0.00 0.00 0.00 3.95
531 536 4.680237 CCCTGGCTGACGTTCGCA 62.680 66.667 11.34 0.00 0.00 5.10
532 537 2.664851 CCTGGCTGACGTTCGCAA 60.665 61.111 11.34 0.29 0.00 4.85
533 538 2.551270 CTGGCTGACGTTCGCAAC 59.449 61.111 11.34 0.00 0.00 4.17
534 539 1.956170 CTGGCTGACGTTCGCAACT 60.956 57.895 11.34 0.00 0.00 3.16
535 540 0.666274 CTGGCTGACGTTCGCAACTA 60.666 55.000 11.34 0.00 0.00 2.24
536 541 0.249531 TGGCTGACGTTCGCAACTAA 60.250 50.000 11.34 0.00 0.00 2.24
537 542 0.863144 GGCTGACGTTCGCAACTAAA 59.137 50.000 11.34 0.00 0.00 1.85
538 543 1.262151 GGCTGACGTTCGCAACTAAAA 59.738 47.619 11.34 0.00 0.00 1.52
539 544 2.095919 GGCTGACGTTCGCAACTAAAAT 60.096 45.455 11.34 0.00 0.00 1.82
540 545 3.123959 GGCTGACGTTCGCAACTAAAATA 59.876 43.478 11.34 0.00 0.00 1.40
541 546 4.201783 GGCTGACGTTCGCAACTAAAATAT 60.202 41.667 11.34 0.00 0.00 1.28
542 547 4.956184 GCTGACGTTCGCAACTAAAATATC 59.044 41.667 5.30 0.00 0.00 1.63
543 548 5.459110 TGACGTTCGCAACTAAAATATCC 57.541 39.130 0.00 0.00 0.00 2.59
544 549 4.031991 TGACGTTCGCAACTAAAATATCCG 59.968 41.667 0.00 0.00 0.00 4.18
545 550 4.175516 ACGTTCGCAACTAAAATATCCGA 58.824 39.130 0.00 0.00 0.00 4.55
546 551 4.626604 ACGTTCGCAACTAAAATATCCGAA 59.373 37.500 0.00 0.00 0.00 4.30
547 552 5.292589 ACGTTCGCAACTAAAATATCCGAAT 59.707 36.000 0.00 0.00 35.97 3.34
548 553 6.183360 ACGTTCGCAACTAAAATATCCGAATT 60.183 34.615 0.00 0.00 35.97 2.17
549 554 6.353582 CGTTCGCAACTAAAATATCCGAATTC 59.646 38.462 0.00 0.00 35.97 2.17
550 555 5.969741 TCGCAACTAAAATATCCGAATTCG 58.030 37.500 20.92 20.92 39.44 3.34
551 556 5.749588 TCGCAACTAAAATATCCGAATTCGA 59.250 36.000 28.76 14.98 43.02 3.71
552 557 6.256104 TCGCAACTAAAATATCCGAATTCGAA 59.744 34.615 28.76 9.93 43.02 3.71
553 558 6.570058 CGCAACTAAAATATCCGAATTCGAAG 59.430 38.462 28.76 13.27 43.02 3.79
554 559 7.516155 CGCAACTAAAATATCCGAATTCGAAGA 60.516 37.037 28.76 18.16 43.02 2.87
555 560 8.120465 GCAACTAAAATATCCGAATTCGAAGAA 58.880 33.333 28.76 11.44 45.90 2.52
558 563 9.542462 ACTAAAATATCCGAATTCGAAGAATCA 57.458 29.630 28.76 8.69 45.90 2.57
561 566 9.884465 AAAATATCCGAATTCGAAGAATCAATC 57.116 29.630 28.76 0.00 45.90 2.67
562 567 8.607441 AATATCCGAATTCGAAGAATCAATCA 57.393 30.769 28.76 2.68 45.90 2.57
563 568 6.925610 ATCCGAATTCGAAGAATCAATCAA 57.074 33.333 28.76 0.00 45.90 2.57
564 569 6.349973 TCCGAATTCGAAGAATCAATCAAG 57.650 37.500 28.76 7.00 45.90 3.02
565 570 6.106003 TCCGAATTCGAAGAATCAATCAAGA 58.894 36.000 28.76 9.25 45.90 3.02
566 571 6.256539 TCCGAATTCGAAGAATCAATCAAGAG 59.743 38.462 28.76 5.99 45.90 2.85
567 572 6.256539 CCGAATTCGAAGAATCAATCAAGAGA 59.743 38.462 28.76 0.00 45.90 3.10
568 573 7.336232 CGAATTCGAAGAATCAATCAAGAGAG 58.664 38.462 23.29 0.00 45.90 3.20
569 574 6.601741 ATTCGAAGAATCAATCAAGAGAGC 57.398 37.500 3.35 0.00 45.90 4.09
570 575 5.077134 TCGAAGAATCAATCAAGAGAGCA 57.923 39.130 0.00 0.00 0.00 4.26
571 576 5.482006 TCGAAGAATCAATCAAGAGAGCAA 58.518 37.500 0.00 0.00 0.00 3.91
572 577 5.934043 TCGAAGAATCAATCAAGAGAGCAAA 59.066 36.000 0.00 0.00 0.00 3.68
573 578 6.020372 CGAAGAATCAATCAAGAGAGCAAAC 58.980 40.000 0.00 0.00 0.00 2.93
574 579 5.542616 AGAATCAATCAAGAGAGCAAACG 57.457 39.130 0.00 0.00 0.00 3.60
575 580 3.754188 ATCAATCAAGAGAGCAAACGC 57.246 42.857 0.00 0.00 0.00 4.84
576 581 2.493035 TCAATCAAGAGAGCAAACGCA 58.507 42.857 0.00 0.00 0.00 5.24
577 582 2.877786 TCAATCAAGAGAGCAAACGCAA 59.122 40.909 0.00 0.00 0.00 4.85
578 583 3.314913 TCAATCAAGAGAGCAAACGCAAA 59.685 39.130 0.00 0.00 0.00 3.68
579 584 3.988379 ATCAAGAGAGCAAACGCAAAA 57.012 38.095 0.00 0.00 0.00 2.44
580 585 3.988379 TCAAGAGAGCAAACGCAAAAT 57.012 38.095 0.00 0.00 0.00 1.82
581 586 3.631144 TCAAGAGAGCAAACGCAAAATG 58.369 40.909 0.00 0.00 0.00 2.32
582 587 2.712057 AGAGAGCAAACGCAAAATGG 57.288 45.000 0.00 0.00 0.00 3.16
583 588 1.063031 GAGAGCAAACGCAAAATGGC 58.937 50.000 0.00 0.00 0.00 4.40
584 589 0.675633 AGAGCAAACGCAAAATGGCT 59.324 45.000 0.00 0.00 0.00 4.75
585 590 0.785979 GAGCAAACGCAAAATGGCTG 59.214 50.000 0.00 0.00 0.00 4.85
586 591 1.204813 GCAAACGCAAAATGGCTGC 59.795 52.632 0.00 0.00 36.41 5.25
591 596 2.504681 GCAAAATGGCTGCGTCCG 60.505 61.111 0.00 0.00 0.00 4.79
592 597 2.953821 CAAAATGGCTGCGTCCGT 59.046 55.556 0.00 0.00 0.00 4.69
593 598 1.285641 CAAAATGGCTGCGTCCGTT 59.714 52.632 0.00 0.00 36.94 4.44
594 599 0.729140 CAAAATGGCTGCGTCCGTTC 60.729 55.000 2.47 0.00 34.40 3.95
595 600 1.862602 AAAATGGCTGCGTCCGTTCC 61.863 55.000 2.47 0.00 34.40 3.62
596 601 2.748058 AAATGGCTGCGTCCGTTCCT 62.748 55.000 2.47 0.00 34.40 3.36
597 602 3.665675 ATGGCTGCGTCCGTTCCTC 62.666 63.158 0.00 0.00 0.00 3.71
599 604 4.415332 GCTGCGTCCGTTCCTCGA 62.415 66.667 0.00 0.00 42.86 4.04
600 605 2.490217 CTGCGTCCGTTCCTCGAT 59.510 61.111 0.00 0.00 42.86 3.59
601 606 1.586564 CTGCGTCCGTTCCTCGATC 60.587 63.158 0.00 0.00 42.86 3.69
602 607 2.651232 GCGTCCGTTCCTCGATCG 60.651 66.667 9.36 9.36 42.86 3.69
603 608 3.095911 CGTCCGTTCCTCGATCGA 58.904 61.111 18.32 18.32 42.86 3.59
604 609 1.297451 CGTCCGTTCCTCGATCGAC 60.297 63.158 15.15 3.97 42.86 4.20
605 610 1.703438 CGTCCGTTCCTCGATCGACT 61.703 60.000 15.15 0.00 42.86 4.18
606 611 0.450983 GTCCGTTCCTCGATCGACTT 59.549 55.000 15.15 0.00 42.86 3.01
607 612 0.450583 TCCGTTCCTCGATCGACTTG 59.549 55.000 15.15 4.66 42.86 3.16
608 613 0.170561 CCGTTCCTCGATCGACTTGT 59.829 55.000 15.15 0.00 42.86 3.16
609 614 1.402456 CCGTTCCTCGATCGACTTGTT 60.402 52.381 15.15 0.00 42.86 2.83
610 615 1.649171 CGTTCCTCGATCGACTTGTTG 59.351 52.381 15.15 3.03 42.86 3.33
611 616 1.993370 GTTCCTCGATCGACTTGTTGG 59.007 52.381 15.15 13.00 0.00 3.77
612 617 1.541379 TCCTCGATCGACTTGTTGGA 58.459 50.000 15.15 15.25 0.00 3.53
613 618 1.472878 TCCTCGATCGACTTGTTGGAG 59.527 52.381 15.15 0.64 0.00 3.86
614 619 1.472878 CCTCGATCGACTTGTTGGAGA 59.527 52.381 15.15 0.00 0.00 3.71
615 620 2.094700 CCTCGATCGACTTGTTGGAGAA 60.095 50.000 15.15 0.00 0.00 2.87
616 621 3.575630 CTCGATCGACTTGTTGGAGAAA 58.424 45.455 15.15 0.00 0.00 2.52
617 622 3.985008 TCGATCGACTTGTTGGAGAAAA 58.015 40.909 15.15 0.00 0.00 2.29
618 623 4.566004 TCGATCGACTTGTTGGAGAAAAT 58.434 39.130 15.15 0.00 0.00 1.82
619 624 4.388773 TCGATCGACTTGTTGGAGAAAATG 59.611 41.667 15.15 0.00 0.00 2.32
620 625 4.152402 CGATCGACTTGTTGGAGAAAATGT 59.848 41.667 10.26 0.00 0.00 2.71
621 626 4.811555 TCGACTTGTTGGAGAAAATGTG 57.188 40.909 0.00 0.00 0.00 3.21
622 627 3.563808 TCGACTTGTTGGAGAAAATGTGG 59.436 43.478 0.00 0.00 0.00 4.17
623 628 3.315191 CGACTTGTTGGAGAAAATGTGGT 59.685 43.478 0.00 0.00 0.00 4.16
624 629 4.610945 GACTTGTTGGAGAAAATGTGGTG 58.389 43.478 0.00 0.00 0.00 4.17
625 630 4.023291 ACTTGTTGGAGAAAATGTGGTGT 58.977 39.130 0.00 0.00 0.00 4.16
626 631 4.142182 ACTTGTTGGAGAAAATGTGGTGTG 60.142 41.667 0.00 0.00 0.00 3.82
627 632 3.360867 TGTTGGAGAAAATGTGGTGTGT 58.639 40.909 0.00 0.00 0.00 3.72
628 633 3.130164 TGTTGGAGAAAATGTGGTGTGTG 59.870 43.478 0.00 0.00 0.00 3.82
629 634 1.680735 TGGAGAAAATGTGGTGTGTGC 59.319 47.619 0.00 0.00 0.00 4.57
630 635 1.956477 GGAGAAAATGTGGTGTGTGCT 59.044 47.619 0.00 0.00 0.00 4.40
631 636 2.030805 GGAGAAAATGTGGTGTGTGCTC 60.031 50.000 0.00 0.00 0.00 4.26
632 637 1.956477 AGAAAATGTGGTGTGTGCTCC 59.044 47.619 0.00 0.00 0.00 4.70
633 638 1.680735 GAAAATGTGGTGTGTGCTCCA 59.319 47.619 0.00 0.00 36.07 3.86
634 639 1.999648 AAATGTGGTGTGTGCTCCAT 58.000 45.000 0.00 0.00 39.99 3.41
635 640 1.538047 AATGTGGTGTGTGCTCCATC 58.462 50.000 0.00 0.00 39.99 3.51
636 641 0.674581 ATGTGGTGTGTGCTCCATCG 60.675 55.000 0.00 0.00 39.99 3.84
637 642 1.301716 GTGGTGTGTGCTCCATCGT 60.302 57.895 0.00 0.00 39.99 3.73
638 643 1.005037 TGGTGTGTGCTCCATCGTC 60.005 57.895 0.00 0.00 33.76 4.20
639 644 1.005037 GGTGTGTGCTCCATCGTCA 60.005 57.895 0.00 0.00 0.00 4.35
640 645 0.391661 GGTGTGTGCTCCATCGTCAT 60.392 55.000 0.00 0.00 0.00 3.06
641 646 0.723414 GTGTGTGCTCCATCGTCATG 59.277 55.000 0.00 0.00 0.00 3.07
642 647 1.020861 TGTGTGCTCCATCGTCATGC 61.021 55.000 0.00 0.00 0.00 4.06
643 648 1.020861 GTGTGCTCCATCGTCATGCA 61.021 55.000 0.00 0.00 0.00 3.96
644 649 1.717937 GTGCTCCATCGTCATGCAC 59.282 57.895 0.00 0.00 45.23 4.57
653 658 2.827502 CGTCATGCACGCAATTACG 58.172 52.632 0.00 2.92 42.87 3.18
654 659 1.187553 CGTCATGCACGCAATTACGC 61.188 55.000 0.00 0.00 42.87 4.42
655 660 0.179202 GTCATGCACGCAATTACGCA 60.179 50.000 0.00 0.00 39.01 5.24
656 661 0.731994 TCATGCACGCAATTACGCAT 59.268 45.000 0.00 0.00 45.65 4.73
657 662 3.239102 ATGCACGCAATTACGCATG 57.761 47.368 0.00 0.00 43.21 4.06
658 663 0.451383 ATGCACGCAATTACGCATGT 59.549 45.000 0.00 0.00 43.21 3.21
659 664 0.454117 TGCACGCAATTACGCATGTG 60.454 50.000 4.30 4.30 36.19 3.21
660 665 0.454285 GCACGCAATTACGCATGTGT 60.454 50.000 17.35 17.35 40.68 3.72
661 666 3.674225 ACGCAATTACGCATGTGTG 57.326 47.368 22.00 6.20 38.73 3.82
662 667 0.871722 ACGCAATTACGCATGTGTGT 59.128 45.000 22.00 7.12 38.73 3.72
663 668 1.249598 CGCAATTACGCATGTGTGTG 58.750 50.000 22.00 16.49 39.38 3.82
664 669 0.984109 GCAATTACGCATGTGTGTGC 59.016 50.000 22.00 21.49 39.47 4.57
665 670 1.665448 GCAATTACGCATGTGTGTGCA 60.665 47.619 26.45 7.40 45.30 4.57
666 671 2.866198 CAATTACGCATGTGTGTGCAT 58.134 42.857 22.00 5.86 45.30 3.96
667 672 2.547913 ATTACGCATGTGTGTGCATG 57.452 45.000 22.00 2.06 45.30 4.06
740 745 3.818773 CGTCCCACAGAACTACCATTTTT 59.181 43.478 0.00 0.00 0.00 1.94
840 845 3.120095 GCCGTTTTAACCGCTTAACTGAT 60.120 43.478 0.00 0.00 31.77 2.90
978 985 2.125912 CGGCCGACCTTCACTCAG 60.126 66.667 24.07 0.00 0.00 3.35
998 1019 1.816224 GTCTCACTCACTCACTCCTCC 59.184 57.143 0.00 0.00 0.00 4.30
1205 1226 0.613777 AGGGTTAGGGTTTGAGCTCG 59.386 55.000 9.64 0.00 0.00 5.03
1280 1302 1.001378 GGTTGGTACTGCAGCAAACTG 60.001 52.381 15.27 0.00 46.65 3.16
1379 1401 1.617850 CAGGCAGGTTTGTGGCATTTA 59.382 47.619 0.00 0.00 45.34 1.40
1495 1517 5.300539 TGGTACATAGTGCAAACAACATTGT 59.699 36.000 0.00 0.00 44.72 2.71
1617 1639 6.598064 AGGGAACATCTAAAATTGGTCTAACG 59.402 38.462 0.00 0.00 30.18 3.18
1987 2012 2.097036 CATGACATGGACACAAGCCAT 58.903 47.619 7.60 0.00 46.76 4.40
2109 2134 2.167281 TCCTGCAGAGTCAAGCTGATAC 59.833 50.000 17.39 0.00 35.39 2.24
2401 2619 5.570320 TGAACTGCCTAAGCCTAAGAATTT 58.430 37.500 0.00 0.00 38.69 1.82
2532 2812 5.222007 ACCTTATTATCTAAGCCTGCTGCAT 60.222 40.000 1.31 0.00 44.83 3.96
2536 2816 5.920193 TTATCTAAGCCTGCTGCATTTTT 57.080 34.783 1.31 0.35 44.83 1.94
2637 2917 5.881923 AACACTGAACAAAGGTAGGTAGA 57.118 39.130 0.00 0.00 0.00 2.59
2872 3266 3.458163 TCCTGCTAAGCGTCCGGG 61.458 66.667 0.00 0.00 0.00 5.73
2911 3305 0.040499 GGTTGGGTGGGATTTGGCTA 59.960 55.000 0.00 0.00 0.00 3.93
2961 3367 3.286871 TGATGATGATGGGAGGAGGAT 57.713 47.619 0.00 0.00 0.00 3.24
3202 3608 1.144716 CCATGCGCTGCTTCTCCTA 59.855 57.895 9.73 0.00 0.00 2.94
3331 3737 1.202915 TGCTGAACCAAGAAGCATGGA 60.203 47.619 0.00 0.00 41.83 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 67 1.668826 TGTGGGCTTGAATCCTAGGT 58.331 50.000 9.08 0.00 0.00 3.08
73 78 1.755265 GCACATGGGATATGTGGGCTT 60.755 52.381 18.40 0.00 46.85 4.35
80 85 2.934887 TGGTCTTGCACATGGGATATG 58.065 47.619 0.00 0.00 0.00 1.78
81 86 3.138839 TCATGGTCTTGCACATGGGATAT 59.861 43.478 13.32 0.00 43.49 1.63
113 118 0.729116 CCTTGTACTCGCATTGGCTG 59.271 55.000 0.00 0.00 38.10 4.85
114 119 0.324943 ACCTTGTACTCGCATTGGCT 59.675 50.000 0.00 0.00 38.10 4.75
115 120 1.664151 GTACCTTGTACTCGCATTGGC 59.336 52.381 0.00 0.00 0.00 4.52
116 121 2.277084 GGTACCTTGTACTCGCATTGG 58.723 52.381 4.06 0.00 0.00 3.16
132 137 2.223758 GGATCGTTACTGCAGAGGGTAC 60.224 54.545 23.35 9.24 0.00 3.34
133 138 2.029623 GGATCGTTACTGCAGAGGGTA 58.970 52.381 23.35 0.00 0.00 3.69
134 139 0.824759 GGATCGTTACTGCAGAGGGT 59.175 55.000 23.35 0.00 0.00 4.34
135 140 0.824109 TGGATCGTTACTGCAGAGGG 59.176 55.000 23.35 6.60 0.00 4.30
136 141 2.166459 TCTTGGATCGTTACTGCAGAGG 59.834 50.000 23.35 4.59 0.00 3.69
137 142 3.510388 TCTTGGATCGTTACTGCAGAG 57.490 47.619 23.35 8.75 0.00 3.35
138 143 5.791336 ATATCTTGGATCGTTACTGCAGA 57.209 39.130 23.35 0.48 0.00 4.26
139 144 7.359598 GCTTAATATCTTGGATCGTTACTGCAG 60.360 40.741 13.48 13.48 0.00 4.41
140 145 6.423905 GCTTAATATCTTGGATCGTTACTGCA 59.576 38.462 0.00 0.00 0.00 4.41
141 146 6.423905 TGCTTAATATCTTGGATCGTTACTGC 59.576 38.462 0.00 0.00 0.00 4.40
142 147 7.946655 TGCTTAATATCTTGGATCGTTACTG 57.053 36.000 0.00 0.00 0.00 2.74
143 148 8.958119 TTTGCTTAATATCTTGGATCGTTACT 57.042 30.769 0.00 0.00 0.00 2.24
144 149 8.283291 CCTTTGCTTAATATCTTGGATCGTTAC 58.717 37.037 0.00 0.00 0.00 2.50
145 150 8.208224 TCCTTTGCTTAATATCTTGGATCGTTA 58.792 33.333 0.00 0.00 0.00 3.18
146 151 7.054124 TCCTTTGCTTAATATCTTGGATCGTT 58.946 34.615 0.00 0.00 0.00 3.85
147 152 6.591935 TCCTTTGCTTAATATCTTGGATCGT 58.408 36.000 0.00 0.00 0.00 3.73
148 153 7.524912 CATCCTTTGCTTAATATCTTGGATCG 58.475 38.462 0.00 0.00 30.37 3.69
165 170 4.276678 TGAAGTGAAGTCTTGCATCCTTTG 59.723 41.667 0.00 0.00 0.00 2.77
166 171 4.464008 TGAAGTGAAGTCTTGCATCCTTT 58.536 39.130 0.00 0.00 0.00 3.11
167 172 4.070716 CTGAAGTGAAGTCTTGCATCCTT 58.929 43.478 0.00 0.00 0.00 3.36
168 173 3.072184 ACTGAAGTGAAGTCTTGCATCCT 59.928 43.478 0.00 0.00 0.00 3.24
169 174 3.406764 ACTGAAGTGAAGTCTTGCATCC 58.593 45.455 0.00 0.00 0.00 3.51
170 175 4.512944 TCAACTGAAGTGAAGTCTTGCATC 59.487 41.667 0.00 0.00 0.00 3.91
171 176 4.454678 TCAACTGAAGTGAAGTCTTGCAT 58.545 39.130 0.00 0.00 0.00 3.96
172 177 3.872696 TCAACTGAAGTGAAGTCTTGCA 58.127 40.909 0.00 0.00 0.00 4.08
173 178 5.429957 AATCAACTGAAGTGAAGTCTTGC 57.570 39.130 0.00 0.00 0.00 4.01
174 179 7.482654 TGTAATCAACTGAAGTGAAGTCTTG 57.517 36.000 0.00 0.00 0.00 3.02
175 180 8.316640 GATGTAATCAACTGAAGTGAAGTCTT 57.683 34.615 0.00 0.00 44.70 3.01
176 181 7.897575 GATGTAATCAACTGAAGTGAAGTCT 57.102 36.000 0.00 0.00 44.70 3.24
192 197 4.965814 TCCTGCTTCTCATGGATGTAATC 58.034 43.478 0.00 0.00 44.55 1.75
193 198 4.657504 TCTCCTGCTTCTCATGGATGTAAT 59.342 41.667 0.00 0.00 0.00 1.89
194 199 4.033009 TCTCCTGCTTCTCATGGATGTAA 58.967 43.478 0.00 0.00 0.00 2.41
195 200 3.646534 TCTCCTGCTTCTCATGGATGTA 58.353 45.455 0.00 0.00 0.00 2.29
196 201 2.475155 TCTCCTGCTTCTCATGGATGT 58.525 47.619 0.00 0.00 0.00 3.06
197 202 3.071167 TCATCTCCTGCTTCTCATGGATG 59.929 47.826 0.00 0.00 0.00 3.51
198 203 3.315596 TCATCTCCTGCTTCTCATGGAT 58.684 45.455 0.00 0.00 0.00 3.41
199 204 2.755686 TCATCTCCTGCTTCTCATGGA 58.244 47.619 0.00 0.00 0.00 3.41
200 205 3.555527 TTCATCTCCTGCTTCTCATGG 57.444 47.619 0.00 0.00 0.00 3.66
201 206 4.963373 AGATTCATCTCCTGCTTCTCATG 58.037 43.478 0.00 0.00 29.30 3.07
202 207 5.130643 TCAAGATTCATCTCCTGCTTCTCAT 59.869 40.000 0.00 0.00 35.76 2.90
203 208 4.468868 TCAAGATTCATCTCCTGCTTCTCA 59.531 41.667 0.00 0.00 35.76 3.27
204 209 5.021033 TCAAGATTCATCTCCTGCTTCTC 57.979 43.478 0.00 0.00 35.76 2.87
205 210 5.430007 CTTCAAGATTCATCTCCTGCTTCT 58.570 41.667 0.00 0.00 35.76 2.85
206 211 4.035441 GCTTCAAGATTCATCTCCTGCTTC 59.965 45.833 0.00 0.00 35.76 3.86
207 212 3.946558 GCTTCAAGATTCATCTCCTGCTT 59.053 43.478 0.00 0.00 35.76 3.91
208 213 3.200385 AGCTTCAAGATTCATCTCCTGCT 59.800 43.478 0.00 0.00 35.76 4.24
209 214 3.543665 AGCTTCAAGATTCATCTCCTGC 58.456 45.455 0.00 0.00 35.76 4.85
210 215 4.571580 GTGAGCTTCAAGATTCATCTCCTG 59.428 45.833 0.00 0.00 35.76 3.86
211 216 4.224594 TGTGAGCTTCAAGATTCATCTCCT 59.775 41.667 0.00 0.00 35.76 3.69
212 217 4.511527 TGTGAGCTTCAAGATTCATCTCC 58.488 43.478 0.00 0.00 35.76 3.71
213 218 5.447548 GCTTGTGAGCTTCAAGATTCATCTC 60.448 44.000 25.98 9.99 45.65 2.75
214 219 4.395542 GCTTGTGAGCTTCAAGATTCATCT 59.604 41.667 25.98 0.00 45.65 2.90
215 220 4.660105 GCTTGTGAGCTTCAAGATTCATC 58.340 43.478 25.98 11.00 45.65 2.92
216 221 4.698583 GCTTGTGAGCTTCAAGATTCAT 57.301 40.909 25.98 0.00 45.65 2.57
237 242 4.474226 AAGTAGTCGCTGCTTTTGAAAG 57.526 40.909 0.00 0.00 32.83 2.62
238 243 4.893424 AAAGTAGTCGCTGCTTTTGAAA 57.107 36.364 13.92 0.00 42.07 2.69
239 244 4.084013 GCTAAAGTAGTCGCTGCTTTTGAA 60.084 41.667 22.97 10.84 42.07 2.69
240 245 3.432252 GCTAAAGTAGTCGCTGCTTTTGA 59.568 43.478 22.97 11.30 42.07 2.69
241 246 3.433615 AGCTAAAGTAGTCGCTGCTTTTG 59.566 43.478 20.86 19.56 42.07 2.44
242 247 3.665190 AGCTAAAGTAGTCGCTGCTTTT 58.335 40.909 20.86 7.40 42.07 2.27
243 248 3.320673 AGCTAAAGTAGTCGCTGCTTT 57.679 42.857 20.02 20.02 45.42 3.51
244 249 3.320673 AAGCTAAAGTAGTCGCTGCTT 57.679 42.857 0.00 4.81 37.99 3.91
245 250 3.320673 AAAGCTAAAGTAGTCGCTGCT 57.679 42.857 0.00 0.00 32.22 4.24
246 251 3.424962 CCAAAAGCTAAAGTAGTCGCTGC 60.425 47.826 0.00 0.00 32.22 5.25
247 252 3.424962 GCCAAAAGCTAAAGTAGTCGCTG 60.425 47.826 0.00 0.00 38.99 5.18
248 253 2.742589 GCCAAAAGCTAAAGTAGTCGCT 59.257 45.455 0.00 0.00 38.99 4.93
249 254 3.118807 GCCAAAAGCTAAAGTAGTCGC 57.881 47.619 0.00 0.00 38.99 5.19
255 260 9.885351 CCAAATATGGCAGCCAAAAGCTAAAGT 62.885 40.741 20.84 0.00 45.73 2.66
256 261 7.616104 CCAAATATGGCAGCCAAAAGCTAAAG 61.616 42.308 20.84 2.52 45.73 1.85
257 262 5.857540 CCAAATATGGCAGCCAAAAGCTAAA 60.858 40.000 20.84 0.00 45.73 1.85
258 263 4.382901 CCAAATATGGCAGCCAAAAGCTAA 60.383 41.667 20.84 0.00 45.73 3.09
259 264 3.132646 CCAAATATGGCAGCCAAAAGCTA 59.867 43.478 20.84 6.14 45.73 3.32
260 265 2.093341 CCAAATATGGCAGCCAAAAGCT 60.093 45.455 20.84 3.51 46.17 3.74
261 266 2.282407 CCAAATATGGCAGCCAAAAGC 58.718 47.619 20.84 0.00 40.58 3.51
273 278 8.778358 GTCAGGTAAGATAGAAAGCCAAATATG 58.222 37.037 0.00 0.00 0.00 1.78
274 279 7.657761 CGTCAGGTAAGATAGAAAGCCAAATAT 59.342 37.037 0.00 0.00 0.00 1.28
275 280 6.984474 CGTCAGGTAAGATAGAAAGCCAAATA 59.016 38.462 0.00 0.00 0.00 1.40
276 281 5.817816 CGTCAGGTAAGATAGAAAGCCAAAT 59.182 40.000 0.00 0.00 0.00 2.32
277 282 5.175859 CGTCAGGTAAGATAGAAAGCCAAA 58.824 41.667 0.00 0.00 0.00 3.28
278 283 4.222145 ACGTCAGGTAAGATAGAAAGCCAA 59.778 41.667 0.00 0.00 0.00 4.52
279 284 3.767673 ACGTCAGGTAAGATAGAAAGCCA 59.232 43.478 0.00 0.00 0.00 4.75
280 285 4.388378 ACGTCAGGTAAGATAGAAAGCC 57.612 45.455 0.00 0.00 0.00 4.35
281 286 8.328864 CAAATAACGTCAGGTAAGATAGAAAGC 58.671 37.037 0.00 0.00 0.00 3.51
282 287 9.367444 ACAAATAACGTCAGGTAAGATAGAAAG 57.633 33.333 0.00 0.00 0.00 2.62
286 291 9.408069 GGATACAAATAACGTCAGGTAAGATAG 57.592 37.037 0.00 0.00 0.00 2.08
287 292 8.362639 GGGATACAAATAACGTCAGGTAAGATA 58.637 37.037 0.00 0.00 39.74 1.98
288 293 7.147620 TGGGATACAAATAACGTCAGGTAAGAT 60.148 37.037 0.00 0.00 39.74 2.40
289 294 6.154877 TGGGATACAAATAACGTCAGGTAAGA 59.845 38.462 0.00 0.00 39.74 2.10
290 295 6.342906 TGGGATACAAATAACGTCAGGTAAG 58.657 40.000 0.00 0.00 39.74 2.34
291 296 6.154877 TCTGGGATACAAATAACGTCAGGTAA 59.845 38.462 0.00 0.00 39.74 2.85
292 297 5.657745 TCTGGGATACAAATAACGTCAGGTA 59.342 40.000 0.00 0.00 39.74 3.08
293 298 4.468510 TCTGGGATACAAATAACGTCAGGT 59.531 41.667 0.00 0.00 39.74 4.00
294 299 5.018539 TCTGGGATACAAATAACGTCAGG 57.981 43.478 0.00 0.00 39.74 3.86
295 300 6.516718 AGATCTGGGATACAAATAACGTCAG 58.483 40.000 0.00 0.00 39.74 3.51
296 301 6.479972 AGATCTGGGATACAAATAACGTCA 57.520 37.500 0.00 0.00 39.74 4.35
297 302 6.761714 ACAAGATCTGGGATACAAATAACGTC 59.238 38.462 1.23 0.00 39.74 4.34
298 303 6.650120 ACAAGATCTGGGATACAAATAACGT 58.350 36.000 1.23 0.00 39.74 3.99
299 304 7.065803 ACAACAAGATCTGGGATACAAATAACG 59.934 37.037 1.23 0.00 39.74 3.18
300 305 8.281212 ACAACAAGATCTGGGATACAAATAAC 57.719 34.615 1.23 0.00 39.74 1.89
301 306 8.877864 AACAACAAGATCTGGGATACAAATAA 57.122 30.769 1.23 0.00 39.74 1.40
303 308 9.479549 AATAACAACAAGATCTGGGATACAAAT 57.520 29.630 1.23 0.00 39.74 2.32
304 309 8.877864 AATAACAACAAGATCTGGGATACAAA 57.122 30.769 1.23 0.00 39.74 2.83
305 310 8.877864 AAATAACAACAAGATCTGGGATACAA 57.122 30.769 1.23 0.00 39.74 2.41
306 311 9.967451 TTAAATAACAACAAGATCTGGGATACA 57.033 29.630 1.23 0.00 39.74 2.29
309 314 9.533831 AACTTAAATAACAACAAGATCTGGGAT 57.466 29.630 1.23 0.00 0.00 3.85
310 315 8.934023 AACTTAAATAACAACAAGATCTGGGA 57.066 30.769 1.23 0.00 0.00 4.37
316 321 9.908152 GCCACTTAACTTAAATAACAACAAGAT 57.092 29.630 0.00 0.00 0.00 2.40
317 322 9.127277 AGCCACTTAACTTAAATAACAACAAGA 57.873 29.630 0.00 0.00 0.00 3.02
318 323 9.744468 AAGCCACTTAACTTAAATAACAACAAG 57.256 29.630 0.00 0.00 0.00 3.16
320 325 9.738832 GAAAGCCACTTAACTTAAATAACAACA 57.261 29.630 0.00 0.00 0.00 3.33
321 326 9.738832 TGAAAGCCACTTAACTTAAATAACAAC 57.261 29.630 0.00 0.00 0.00 3.32
322 327 9.738832 GTGAAAGCCACTTAACTTAAATAACAA 57.261 29.630 0.00 0.00 42.44 2.83
323 328 8.354426 GGTGAAAGCCACTTAACTTAAATAACA 58.646 33.333 0.00 0.00 45.03 2.41
324 329 8.738199 GGTGAAAGCCACTTAACTTAAATAAC 57.262 34.615 0.00 0.00 45.03 1.89
361 366 0.961753 GCACTGGCTGGCTAGTTTTT 59.038 50.000 8.82 0.00 35.55 1.94
362 367 1.237285 CGCACTGGCTGGCTAGTTTT 61.237 55.000 8.82 0.00 35.55 2.43
363 368 1.672356 CGCACTGGCTGGCTAGTTT 60.672 57.895 8.82 0.00 35.55 2.66
364 369 2.046892 CGCACTGGCTGGCTAGTT 60.047 61.111 8.82 0.00 35.55 2.24
365 370 4.087892 CCGCACTGGCTGGCTAGT 62.088 66.667 5.78 5.78 38.30 2.57
366 371 4.087892 ACCGCACTGGCTGGCTAG 62.088 66.667 2.00 4.44 43.94 3.42
367 372 4.393155 CACCGCACTGGCTGGCTA 62.393 66.667 2.00 0.00 43.94 3.93
403 408 0.396811 AGGCAGCGAACACCTTACTT 59.603 50.000 0.00 0.00 0.00 2.24
404 409 0.396811 AAGGCAGCGAACACCTTACT 59.603 50.000 0.00 0.00 42.00 2.24
416 421 3.315191 TCACTGTAAGACAAAAAGGCAGC 59.685 43.478 0.00 0.00 37.43 5.25
426 431 6.624352 AACTACGTAGTTCACTGTAAGACA 57.376 37.500 30.57 0.00 42.52 3.41
427 432 7.645340 TGAAAACTACGTAGTTCACTGTAAGAC 59.355 37.037 34.45 18.15 45.17 3.01
428 433 7.706159 TGAAAACTACGTAGTTCACTGTAAGA 58.294 34.615 34.45 15.21 45.17 2.10
429 434 7.919313 TGAAAACTACGTAGTTCACTGTAAG 57.081 36.000 34.45 6.72 45.17 2.34
431 436 8.876275 ATTTGAAAACTACGTAGTTCACTGTA 57.124 30.769 34.45 20.86 45.17 2.74
432 437 7.709613 AGATTTGAAAACTACGTAGTTCACTGT 59.290 33.333 34.45 19.82 45.17 3.55
433 438 8.004344 CAGATTTGAAAACTACGTAGTTCACTG 58.996 37.037 34.45 26.20 45.17 3.66
434 439 7.924412 TCAGATTTGAAAACTACGTAGTTCACT 59.076 33.333 34.45 23.69 45.17 3.41
435 440 8.002665 GTCAGATTTGAAAACTACGTAGTTCAC 58.997 37.037 34.45 28.86 45.17 3.18
436 441 7.096353 CGTCAGATTTGAAAACTACGTAGTTCA 60.096 37.037 34.45 27.40 45.17 3.18
437 442 7.096312 ACGTCAGATTTGAAAACTACGTAGTTC 60.096 37.037 34.45 25.44 45.17 3.01
439 444 6.143438 CACGTCAGATTTGAAAACTACGTAGT 59.857 38.462 22.45 22.45 39.02 2.73
440 445 6.399669 CCACGTCAGATTTGAAAACTACGTAG 60.400 42.308 20.97 20.97 34.49 3.51
441 446 5.403166 CCACGTCAGATTTGAAAACTACGTA 59.597 40.000 15.92 0.00 34.49 3.57
442 447 4.210537 CCACGTCAGATTTGAAAACTACGT 59.789 41.667 12.89 12.89 34.49 3.57
443 448 4.698276 CCACGTCAGATTTGAAAACTACG 58.302 43.478 12.04 12.04 34.49 3.51
444 449 4.024387 TGCCACGTCAGATTTGAAAACTAC 60.024 41.667 0.00 0.00 34.49 2.73
445 450 4.130857 TGCCACGTCAGATTTGAAAACTA 58.869 39.130 0.00 0.00 34.49 2.24
446 451 2.948979 TGCCACGTCAGATTTGAAAACT 59.051 40.909 0.00 0.00 34.49 2.66
447 452 3.300009 CTGCCACGTCAGATTTGAAAAC 58.700 45.455 0.00 0.00 36.19 2.43
448 453 2.287547 GCTGCCACGTCAGATTTGAAAA 60.288 45.455 8.35 0.00 36.19 2.29
449 454 1.266718 GCTGCCACGTCAGATTTGAAA 59.733 47.619 8.35 0.00 36.19 2.69
450 455 0.874390 GCTGCCACGTCAGATTTGAA 59.126 50.000 8.35 0.00 36.19 2.69
451 456 1.291184 CGCTGCCACGTCAGATTTGA 61.291 55.000 8.35 0.00 36.19 2.69
452 457 1.133253 CGCTGCCACGTCAGATTTG 59.867 57.895 8.35 0.00 36.19 2.32
453 458 2.034879 CCGCTGCCACGTCAGATTT 61.035 57.895 8.35 0.00 36.19 2.17
454 459 2.434884 CCGCTGCCACGTCAGATT 60.435 61.111 8.35 0.00 36.19 2.40
472 477 2.002586 ACATGAAATCTCGACGCAAGG 58.997 47.619 0.00 0.00 46.39 3.61
474 479 3.060230 CGTTACATGAAATCTCGACGCAA 59.940 43.478 0.00 0.00 0.00 4.85
475 480 2.596862 CGTTACATGAAATCTCGACGCA 59.403 45.455 0.00 0.00 0.00 5.24
476 481 2.034842 CCGTTACATGAAATCTCGACGC 60.035 50.000 0.00 0.00 0.00 5.19
477 482 3.001070 CACCGTTACATGAAATCTCGACG 60.001 47.826 0.00 0.00 0.00 5.12
478 483 3.306166 CCACCGTTACATGAAATCTCGAC 59.694 47.826 0.00 0.00 0.00 4.20
479 484 3.193903 TCCACCGTTACATGAAATCTCGA 59.806 43.478 0.00 0.00 0.00 4.04
480 485 3.517602 TCCACCGTTACATGAAATCTCG 58.482 45.455 0.00 0.00 0.00 4.04
481 486 5.220854 CCATTCCACCGTTACATGAAATCTC 60.221 44.000 0.00 0.00 0.00 2.75
482 487 4.640201 CCATTCCACCGTTACATGAAATCT 59.360 41.667 0.00 0.00 0.00 2.40
483 488 4.638421 TCCATTCCACCGTTACATGAAATC 59.362 41.667 0.00 0.00 0.00 2.17
484 489 4.398044 GTCCATTCCACCGTTACATGAAAT 59.602 41.667 0.00 0.00 0.00 2.17
485 490 3.754323 GTCCATTCCACCGTTACATGAAA 59.246 43.478 0.00 0.00 0.00 2.69
486 491 3.340034 GTCCATTCCACCGTTACATGAA 58.660 45.455 0.00 0.00 0.00 2.57
487 492 2.355310 GGTCCATTCCACCGTTACATGA 60.355 50.000 0.00 0.00 0.00 3.07
488 493 2.014128 GGTCCATTCCACCGTTACATG 58.986 52.381 0.00 0.00 0.00 3.21
489 494 1.913419 AGGTCCATTCCACCGTTACAT 59.087 47.619 0.00 0.00 39.13 2.29
490 495 1.354101 AGGTCCATTCCACCGTTACA 58.646 50.000 0.00 0.00 39.13 2.41
491 496 2.484742 AAGGTCCATTCCACCGTTAC 57.515 50.000 0.00 0.00 39.13 2.50
492 497 2.290450 GGAAAGGTCCATTCCACCGTTA 60.290 50.000 19.08 0.00 44.70 3.18
493 498 1.546998 GGAAAGGTCCATTCCACCGTT 60.547 52.381 19.08 0.00 44.70 4.44
494 499 0.037734 GGAAAGGTCCATTCCACCGT 59.962 55.000 19.08 0.00 44.70 4.83
495 500 0.679960 GGGAAAGGTCCATTCCACCG 60.680 60.000 23.94 0.00 46.69 4.94
496 501 0.324368 GGGGAAAGGTCCATTCCACC 60.324 60.000 23.94 18.62 46.69 4.61
497 502 3.283020 GGGGAAAGGTCCATTCCAC 57.717 57.895 23.94 18.73 46.69 4.02
498 503 0.479589 AGGGGGAAAGGTCCATTCCA 60.480 55.000 23.94 0.00 46.69 3.53
504 509 2.941583 AGCCAGGGGGAAAGGTCC 60.942 66.667 0.00 0.00 44.10 4.46
505 510 2.231380 TCAGCCAGGGGGAAAGGTC 61.231 63.158 0.00 0.00 35.59 3.85
506 511 2.121506 TCAGCCAGGGGGAAAGGT 60.122 61.111 0.00 0.00 35.59 3.50
507 512 2.356667 GTCAGCCAGGGGGAAAGG 59.643 66.667 0.00 0.00 35.59 3.11
508 513 2.045926 CGTCAGCCAGGGGGAAAG 60.046 66.667 0.00 0.00 35.59 2.62
509 514 2.406002 GAACGTCAGCCAGGGGGAAA 62.406 60.000 0.00 0.00 35.59 3.13
510 515 2.852075 AACGTCAGCCAGGGGGAA 60.852 61.111 0.00 0.00 35.59 3.97
511 516 3.319198 GAACGTCAGCCAGGGGGA 61.319 66.667 0.00 0.00 35.59 4.81
512 517 4.760047 CGAACGTCAGCCAGGGGG 62.760 72.222 0.00 0.00 37.18 5.40
514 519 4.680237 TGCGAACGTCAGCCAGGG 62.680 66.667 11.82 0.00 0.00 4.45
515 520 2.664851 TTGCGAACGTCAGCCAGG 60.665 61.111 11.82 0.00 0.00 4.45
516 521 0.666274 TAGTTGCGAACGTCAGCCAG 60.666 55.000 11.82 0.00 36.23 4.85
517 522 0.249531 TTAGTTGCGAACGTCAGCCA 60.250 50.000 11.82 0.00 36.23 4.75
518 523 0.863144 TTTAGTTGCGAACGTCAGCC 59.137 50.000 11.82 0.00 36.23 4.85
519 524 2.656192 TTTTAGTTGCGAACGTCAGC 57.344 45.000 8.09 8.09 36.23 4.26
520 525 5.490213 GGATATTTTAGTTGCGAACGTCAG 58.510 41.667 0.00 0.00 36.23 3.51
521 526 4.031991 CGGATATTTTAGTTGCGAACGTCA 59.968 41.667 0.00 0.00 36.23 4.35
522 527 4.266029 TCGGATATTTTAGTTGCGAACGTC 59.734 41.667 0.00 0.00 36.23 4.34
523 528 4.175516 TCGGATATTTTAGTTGCGAACGT 58.824 39.130 0.00 0.00 36.23 3.99
524 529 4.765281 TCGGATATTTTAGTTGCGAACG 57.235 40.909 0.00 0.00 36.23 3.95
525 530 6.353582 CGAATTCGGATATTTTAGTTGCGAAC 59.646 38.462 20.16 0.00 44.01 3.95
526 531 6.256104 TCGAATTCGGATATTTTAGTTGCGAA 59.744 34.615 26.47 0.00 45.00 4.70
527 532 5.749588 TCGAATTCGGATATTTTAGTTGCGA 59.250 36.000 26.47 0.00 40.29 5.10
528 533 5.969741 TCGAATTCGGATATTTTAGTTGCG 58.030 37.500 26.47 0.00 40.29 4.85
529 534 7.627340 TCTTCGAATTCGGATATTTTAGTTGC 58.373 34.615 26.47 0.00 40.29 4.17
532 537 9.542462 TGATTCTTCGAATTCGGATATTTTAGT 57.458 29.630 26.47 4.20 40.29 2.24
535 540 9.884465 GATTGATTCTTCGAATTCGGATATTTT 57.116 29.630 26.47 7.11 40.29 1.82
536 541 9.056005 TGATTGATTCTTCGAATTCGGATATTT 57.944 29.630 26.47 8.65 40.29 1.40
537 542 8.607441 TGATTGATTCTTCGAATTCGGATATT 57.393 30.769 26.47 8.22 40.29 1.28
538 543 8.607441 TTGATTGATTCTTCGAATTCGGATAT 57.393 30.769 26.47 14.63 40.29 1.63
539 544 7.926018 TCTTGATTGATTCTTCGAATTCGGATA 59.074 33.333 26.47 9.16 40.29 2.59
540 545 6.763135 TCTTGATTGATTCTTCGAATTCGGAT 59.237 34.615 26.47 15.33 40.29 4.18
541 546 6.106003 TCTTGATTGATTCTTCGAATTCGGA 58.894 36.000 26.47 18.44 40.29 4.55
542 547 6.256539 TCTCTTGATTGATTCTTCGAATTCGG 59.743 38.462 26.47 12.47 40.29 4.30
543 548 7.226757 TCTCTTGATTGATTCTTCGAATTCG 57.773 36.000 21.78 21.78 41.45 3.34
544 549 7.125113 GCTCTCTTGATTGATTCTTCGAATTC 58.875 38.462 0.00 0.00 0.00 2.17
545 550 6.596888 TGCTCTCTTGATTGATTCTTCGAATT 59.403 34.615 0.00 0.00 0.00 2.17
546 551 6.111382 TGCTCTCTTGATTGATTCTTCGAAT 58.889 36.000 0.00 0.00 0.00 3.34
547 552 5.482006 TGCTCTCTTGATTGATTCTTCGAA 58.518 37.500 0.00 0.00 0.00 3.71
548 553 5.077134 TGCTCTCTTGATTGATTCTTCGA 57.923 39.130 0.00 0.00 0.00 3.71
549 554 5.791367 TTGCTCTCTTGATTGATTCTTCG 57.209 39.130 0.00 0.00 0.00 3.79
550 555 6.020372 CGTTTGCTCTCTTGATTGATTCTTC 58.980 40.000 0.00 0.00 0.00 2.87
551 556 5.618640 GCGTTTGCTCTCTTGATTGATTCTT 60.619 40.000 0.00 0.00 38.39 2.52
552 557 4.142730 GCGTTTGCTCTCTTGATTGATTCT 60.143 41.667 0.00 0.00 38.39 2.40
553 558 4.094212 GCGTTTGCTCTCTTGATTGATTC 58.906 43.478 0.00 0.00 38.39 2.52
554 559 3.503363 TGCGTTTGCTCTCTTGATTGATT 59.497 39.130 0.00 0.00 43.34 2.57
555 560 3.076621 TGCGTTTGCTCTCTTGATTGAT 58.923 40.909 0.00 0.00 43.34 2.57
556 561 2.493035 TGCGTTTGCTCTCTTGATTGA 58.507 42.857 0.00 0.00 43.34 2.57
557 562 2.975410 TGCGTTTGCTCTCTTGATTG 57.025 45.000 0.00 0.00 43.34 2.67
558 563 3.988379 TTTGCGTTTGCTCTCTTGATT 57.012 38.095 0.00 0.00 43.34 2.57
559 564 3.988379 TTTTGCGTTTGCTCTCTTGAT 57.012 38.095 0.00 0.00 43.34 2.57
560 565 3.550639 CCATTTTGCGTTTGCTCTCTTGA 60.551 43.478 0.00 0.00 43.34 3.02
561 566 2.727798 CCATTTTGCGTTTGCTCTCTTG 59.272 45.455 0.00 0.00 43.34 3.02
562 567 2.863704 GCCATTTTGCGTTTGCTCTCTT 60.864 45.455 0.00 0.00 43.34 2.85
563 568 1.336240 GCCATTTTGCGTTTGCTCTCT 60.336 47.619 0.00 0.00 43.34 3.10
564 569 1.063031 GCCATTTTGCGTTTGCTCTC 58.937 50.000 0.00 0.00 43.34 3.20
565 570 0.675633 AGCCATTTTGCGTTTGCTCT 59.324 45.000 0.00 0.00 43.34 4.09
566 571 0.785979 CAGCCATTTTGCGTTTGCTC 59.214 50.000 0.00 0.00 43.34 4.26
567 572 1.223417 GCAGCCATTTTGCGTTTGCT 61.223 50.000 0.00 0.00 43.34 3.91
568 573 1.204813 GCAGCCATTTTGCGTTTGC 59.795 52.632 0.00 0.00 43.20 3.68
574 579 2.504681 CGGACGCAGCCATTTTGC 60.505 61.111 0.00 0.00 38.18 3.68
575 580 0.729140 GAACGGACGCAGCCATTTTG 60.729 55.000 0.00 0.00 0.00 2.44
576 581 1.579429 GAACGGACGCAGCCATTTT 59.421 52.632 0.00 0.00 0.00 1.82
577 582 2.332654 GGAACGGACGCAGCCATTT 61.333 57.895 0.00 0.00 0.00 2.32
578 583 2.746277 GGAACGGACGCAGCCATT 60.746 61.111 0.00 0.00 0.00 3.16
579 584 3.665675 GAGGAACGGACGCAGCCAT 62.666 63.158 0.00 0.00 0.00 4.40
580 585 4.373116 GAGGAACGGACGCAGCCA 62.373 66.667 0.00 0.00 0.00 4.75
582 587 3.701604 ATCGAGGAACGGACGCAGC 62.702 63.158 0.00 0.00 42.82 5.25
583 588 1.586564 GATCGAGGAACGGACGCAG 60.587 63.158 0.00 0.00 42.82 5.18
584 589 2.488355 GATCGAGGAACGGACGCA 59.512 61.111 0.00 0.00 42.82 5.24
585 590 2.651232 CGATCGAGGAACGGACGC 60.651 66.667 10.26 0.00 42.82 5.19
586 591 1.297451 GTCGATCGAGGAACGGACG 60.297 63.158 20.09 0.00 42.82 4.79
587 592 0.450983 AAGTCGATCGAGGAACGGAC 59.549 55.000 20.09 4.51 42.82 4.79
588 593 0.450583 CAAGTCGATCGAGGAACGGA 59.549 55.000 20.09 0.00 42.82 4.69
589 594 0.170561 ACAAGTCGATCGAGGAACGG 59.829 55.000 20.09 7.74 42.82 4.44
590 595 1.649171 CAACAAGTCGATCGAGGAACG 59.351 52.381 20.09 8.15 44.09 3.95
591 596 1.993370 CCAACAAGTCGATCGAGGAAC 59.007 52.381 20.09 7.36 0.00 3.62
592 597 1.890489 TCCAACAAGTCGATCGAGGAA 59.110 47.619 20.09 2.84 0.00 3.36
593 598 1.472878 CTCCAACAAGTCGATCGAGGA 59.527 52.381 20.09 18.50 0.00 3.71
594 599 1.472878 TCTCCAACAAGTCGATCGAGG 59.527 52.381 20.09 15.07 0.00 4.63
595 600 2.921634 TCTCCAACAAGTCGATCGAG 57.078 50.000 20.09 9.81 0.00 4.04
596 601 3.653539 TTTCTCCAACAAGTCGATCGA 57.346 42.857 15.15 15.15 0.00 3.59
597 602 4.152402 ACATTTTCTCCAACAAGTCGATCG 59.848 41.667 9.36 9.36 0.00 3.69
598 603 5.385617 CACATTTTCTCCAACAAGTCGATC 58.614 41.667 0.00 0.00 0.00 3.69
599 604 4.216257 CCACATTTTCTCCAACAAGTCGAT 59.784 41.667 0.00 0.00 0.00 3.59
600 605 3.563808 CCACATTTTCTCCAACAAGTCGA 59.436 43.478 0.00 0.00 0.00 4.20
601 606 3.315191 ACCACATTTTCTCCAACAAGTCG 59.685 43.478 0.00 0.00 0.00 4.18
602 607 4.097892 ACACCACATTTTCTCCAACAAGTC 59.902 41.667 0.00 0.00 0.00 3.01
603 608 4.023291 ACACCACATTTTCTCCAACAAGT 58.977 39.130 0.00 0.00 0.00 3.16
604 609 4.142182 ACACACCACATTTTCTCCAACAAG 60.142 41.667 0.00 0.00 0.00 3.16
605 610 3.766591 ACACACCACATTTTCTCCAACAA 59.233 39.130 0.00 0.00 0.00 2.83
606 611 3.130164 CACACACCACATTTTCTCCAACA 59.870 43.478 0.00 0.00 0.00 3.33
607 612 3.705604 CACACACCACATTTTCTCCAAC 58.294 45.455 0.00 0.00 0.00 3.77
608 613 2.100584 GCACACACCACATTTTCTCCAA 59.899 45.455 0.00 0.00 0.00 3.53
609 614 1.680735 GCACACACCACATTTTCTCCA 59.319 47.619 0.00 0.00 0.00 3.86
610 615 1.956477 AGCACACACCACATTTTCTCC 59.044 47.619 0.00 0.00 0.00 3.71
611 616 2.030805 GGAGCACACACCACATTTTCTC 60.031 50.000 0.00 0.00 0.00 2.87
612 617 1.956477 GGAGCACACACCACATTTTCT 59.044 47.619 0.00 0.00 0.00 2.52
613 618 1.680735 TGGAGCACACACCACATTTTC 59.319 47.619 0.00 0.00 30.80 2.29
614 619 1.774110 TGGAGCACACACCACATTTT 58.226 45.000 0.00 0.00 30.80 1.82
615 620 1.888512 GATGGAGCACACACCACATTT 59.111 47.619 0.00 0.00 39.53 2.32
616 621 1.538047 GATGGAGCACACACCACATT 58.462 50.000 0.00 0.00 39.53 2.71
617 622 0.674581 CGATGGAGCACACACCACAT 60.675 55.000 0.00 0.00 39.53 3.21
618 623 1.301637 CGATGGAGCACACACCACA 60.302 57.895 0.00 0.00 39.53 4.17
619 624 1.291877 GACGATGGAGCACACACCAC 61.292 60.000 0.00 0.00 39.53 4.16
620 625 1.005037 GACGATGGAGCACACACCA 60.005 57.895 0.00 0.00 41.09 4.17
621 626 0.391661 ATGACGATGGAGCACACACC 60.392 55.000 0.00 0.00 0.00 4.16
622 627 0.723414 CATGACGATGGAGCACACAC 59.277 55.000 0.00 0.00 0.00 3.82
623 628 1.020861 GCATGACGATGGAGCACACA 61.021 55.000 0.00 0.00 0.00 3.72
624 629 1.020861 TGCATGACGATGGAGCACAC 61.021 55.000 0.00 0.00 0.00 3.82
625 630 1.296068 TGCATGACGATGGAGCACA 59.704 52.632 0.00 0.00 0.00 4.57
626 631 4.206958 TGCATGACGATGGAGCAC 57.793 55.556 0.00 0.00 0.00 4.40
627 632 4.206958 GTGCATGACGATGGAGCA 57.793 55.556 0.00 0.00 29.21 4.26
636 641 0.179202 TGCGTAATTGCGTGCATGAC 60.179 50.000 17.26 1.50 37.81 3.06
637 642 0.731994 ATGCGTAATTGCGTGCATGA 59.268 45.000 17.26 0.00 45.64 3.07
638 643 3.239102 ATGCGTAATTGCGTGCATG 57.761 47.368 17.26 0.09 45.64 4.06
640 645 4.761577 CATGCGTAATTGCGTGCA 57.238 50.000 17.26 8.08 44.13 4.57
643 648 0.871722 ACACACATGCGTAATTGCGT 59.128 45.000 17.26 0.00 37.81 5.24
644 649 1.249598 CACACACATGCGTAATTGCG 58.750 50.000 11.89 11.89 37.81 4.85
645 650 0.984109 GCACACACATGCGTAATTGC 59.016 50.000 0.00 0.00 35.50 3.56
664 669 1.226575 CGCTGGAAGTGCATGCATG 60.227 57.895 25.64 22.70 37.80 4.06
665 670 1.374343 CTCGCTGGAAGTGCATGCAT 61.374 55.000 25.64 8.94 46.11 3.96
666 671 2.032376 TCGCTGGAAGTGCATGCA 59.968 55.556 18.46 18.46 46.11 3.96
667 672 0.740868 TACTCGCTGGAAGTGCATGC 60.741 55.000 11.82 11.82 46.11 4.06
668 673 1.945387 ATACTCGCTGGAAGTGCATG 58.055 50.000 0.00 0.00 46.11 4.06
669 674 2.679837 CAAATACTCGCTGGAAGTGCAT 59.320 45.455 0.00 0.00 46.11 3.96
670 675 2.076100 CAAATACTCGCTGGAAGTGCA 58.924 47.619 0.00 0.00 46.11 4.57
671 676 2.094417 GTCAAATACTCGCTGGAAGTGC 59.906 50.000 0.00 0.00 46.11 4.40
673 678 3.678056 TGTCAAATACTCGCTGGAAGT 57.322 42.857 0.00 0.00 35.30 3.01
674 679 5.356882 TTTTGTCAAATACTCGCTGGAAG 57.643 39.130 0.00 0.00 0.00 3.46
675 680 5.759506 TTTTTGTCAAATACTCGCTGGAA 57.240 34.783 0.00 0.00 0.00 3.53
970 977 3.316588 GTGAGTGAGTGAGACTGAGTGAA 59.683 47.826 0.00 0.00 0.00 3.18
978 985 1.816224 GGAGGAGTGAGTGAGTGAGAC 59.184 57.143 0.00 0.00 0.00 3.36
998 1019 0.686112 AAGAAGAGAGAGCTCGGGGG 60.686 60.000 8.37 0.00 45.98 5.40
1049 1070 4.537433 GGAAGGCATCCTCGCGCT 62.537 66.667 5.56 0.00 45.56 5.92
1205 1226 2.977772 ACTACATGGAAGAGCAGAGC 57.022 50.000 0.00 0.00 0.00 4.09
1280 1302 1.409064 TGGATCTATCACCGTGTCAGC 59.591 52.381 0.00 0.00 0.00 4.26
1379 1401 1.421646 CCTTCCAGTGTCAGTCCCTTT 59.578 52.381 0.00 0.00 0.00 3.11
1617 1639 7.327032 GTCTGAATGCAGTAACAAAGAAATTCC 59.673 37.037 0.00 0.00 42.84 3.01
1987 2012 6.942005 TCTTCTCCTTAAGTTCATTGATTGCA 59.058 34.615 0.97 0.00 0.00 4.08
2109 2134 3.665745 CCTTCCTGGTGTTTTGAATGG 57.334 47.619 0.00 0.00 0.00 3.16
2130 2155 5.272402 TCTCCACTTGTATCTCCTTCATGA 58.728 41.667 0.00 0.00 0.00 3.07
2169 2194 2.028294 TGCTCCAGCTTCTTCTTCTCTG 60.028 50.000 0.00 0.00 42.66 3.35
2401 2619 8.306038 CAACCAAAATGATCTGAAACCATAGAA 58.694 33.333 0.00 0.00 0.00 2.10
2637 2917 2.909006 CCTATGGTGCCTCCTATGTGAT 59.091 50.000 0.00 0.00 37.07 3.06
2770 3050 9.778741 ACTGTATAAGTTTCAGATTCAGTTTCA 57.221 29.630 8.62 0.00 34.57 2.69
2803 3197 4.212214 AGTTTCAGATTCAGTTTCGTCAGC 59.788 41.667 0.00 0.00 0.00 4.26
2872 3266 1.615502 GAAGCAAGAGGTACGACGAC 58.384 55.000 0.00 0.00 0.00 4.34
2911 3305 0.545548 GGAAGAGGAGGTGGAGGTGT 60.546 60.000 0.00 0.00 0.00 4.16
3249 3655 1.134818 CATGAGGTACACCAGCGCTAA 60.135 52.381 10.99 0.00 38.89 3.09
3331 3737 0.190815 AACTGGCAAGGGATGGGTTT 59.809 50.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.