Multiple sequence alignment - TraesCS5A01G537800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G537800 chr5A 100.000 8325 0 0 1 8325 694550658 694558982 0.000000e+00 15337.0
1 TraesCS5A01G537800 chr5A 99.583 3354 14 0 1 3354 694530227 694533580 0.000000e+00 6117.0
2 TraesCS5A01G537800 chr5A 99.218 2815 22 0 5511 8325 694577699 694580513 0.000000e+00 5077.0
3 TraesCS5A01G537800 chr5A 99.817 2737 4 1 1 2737 694571029 694573764 0.000000e+00 5025.0
4 TraesCS5A01G537800 chr5A 99.336 2710 17 1 5616 8325 694535868 694538576 0.000000e+00 4903.0
5 TraesCS5A01G537800 chr5A 95.166 1924 89 2 2708 4630 75362484 75364404 0.000000e+00 3035.0
6 TraesCS5A01G537800 chr5A 85.519 1975 255 18 5517 7475 704369961 704371920 0.000000e+00 2034.0
7 TraesCS5A01G537800 chr5A 89.713 1254 120 3 1101 2345 704368586 704369839 0.000000e+00 1592.0
8 TraesCS5A01G537800 chr5A 84.235 1072 147 13 5627 6684 704452042 704453105 0.000000e+00 1024.0
9 TraesCS5A01G537800 chr5A 92.063 252 17 2 670 919 704367642 704367892 1.330000e-92 351.0
10 TraesCS5A01G537800 chr5A 92.778 180 12 1 2392 2570 229211656 229211835 8.290000e-65 259.0
11 TraesCS5A01G537800 chr5A 88.535 157 8 1 4632 4778 626130301 626130457 1.850000e-41 182.0
12 TraesCS5A01G537800 chr5A 85.897 156 12 4 4632 4777 573358976 573358821 3.110000e-34 158.0
13 TraesCS5A01G537800 chr5A 97.143 35 1 0 942 976 704368549 704368583 9.020000e-05 60.2
14 TraesCS5A01G537800 chr3A 94.641 1922 101 2 2708 4628 666227262 666225342 0.000000e+00 2977.0
15 TraesCS5A01G537800 chr3A 94.699 415 22 0 4780 5194 724273100 724272686 0.000000e+00 645.0
16 TraesCS5A01G537800 chr3A 93.197 294 15 3 5210 5498 726409814 726409521 2.150000e-115 427.0
17 TraesCS5A01G537800 chr3A 96.266 241 8 1 8086 8325 465692551 465692791 2.180000e-105 394.0
18 TraesCS5A01G537800 chr3A 86.842 152 10 4 4634 4775 153404629 153404780 2.400000e-35 161.0
19 TraesCS5A01G537800 chr3A 85.256 156 13 3 4630 4775 57872229 57872074 1.450000e-32 152.0
20 TraesCS5A01G537800 chr3A 84.472 161 14 4 4632 4781 267080937 267081097 1.870000e-31 148.0
21 TraesCS5A01G537800 chr4A 94.237 1926 108 3 2708 4632 157393828 157391905 0.000000e+00 2939.0
22 TraesCS5A01G537800 chr4A 93.523 1930 120 5 2706 4635 537237141 537235217 0.000000e+00 2867.0
23 TraesCS5A01G537800 chr4A 95.864 411 17 0 4784 5194 650164751 650164341 0.000000e+00 665.0
24 TraesCS5A01G537800 chr4A 94.097 288 13 3 5210 5493 701424542 701424255 1.280000e-117 435.0
25 TraesCS5A01G537800 chr4A 91.509 212 13 2 1 210 484237475 484237267 3.800000e-73 287.0
26 TraesCS5A01G537800 chr4A 91.038 212 14 2 1 210 419977090 419977298 1.770000e-71 281.0
27 TraesCS5A01G537800 chr6A 93.727 1929 120 1 2706 4633 479047281 479045353 0.000000e+00 2891.0
28 TraesCS5A01G537800 chr6A 93.704 1922 117 4 2708 4628 584961756 584963674 0.000000e+00 2876.0
29 TraesCS5A01G537800 chr6A 95.357 280 11 2 5210 5487 569460538 569460817 2.130000e-120 444.0
30 TraesCS5A01G537800 chr6A 96.624 237 7 1 8089 8325 478351763 478351528 7.830000e-105 392.0
31 TraesCS5A01G537800 chr6A 92.019 213 11 2 1 210 194459118 194459327 2.270000e-75 294.0
32 TraesCS5A01G537800 chr6A 91.981 212 12 2 1 210 189198529 189198321 8.170000e-75 292.0
33 TraesCS5A01G537800 chr1A 93.515 1943 112 8 2706 4639 439075103 439077040 0.000000e+00 2878.0
34 TraesCS5A01G537800 chr1A 92.381 210 11 2 1 208 557995085 557995291 2.270000e-75 294.0
35 TraesCS5A01G537800 chr1A 91.509 212 13 2 1 210 513906956 513907164 3.800000e-73 287.0
36 TraesCS5A01G537800 chr1A 90.556 180 16 1 2392 2570 126539680 126539859 3.880000e-58 237.0
37 TraesCS5A01G537800 chr1A 88.535 157 8 5 4632 4778 306130739 306130583 1.850000e-41 182.0
38 TraesCS5A01G537800 chr1A 92.727 110 8 0 476 585 535324237 535324128 8.650000e-35 159.0
39 TraesCS5A01G537800 chr7A 94.056 1901 104 6 2733 4632 104645191 104647083 0.000000e+00 2876.0
40 TraesCS5A01G537800 chr7A 91.237 194 15 1 2379 2570 315530404 315530597 6.410000e-66 263.0
41 TraesCS5A01G537800 chr7A 93.750 144 9 0 2566 2709 640634769 640634626 5.060000e-52 217.0
42 TraesCS5A01G537800 chr7A 87.821 156 9 4 4632 4777 454125778 454125933 3.090000e-39 174.0
43 TraesCS5A01G537800 chr7A 94.495 109 6 0 4634 4742 537370552 537370660 1.440000e-37 169.0
44 TraesCS5A01G537800 chr2A 93.582 1932 106 6 2705 4632 170607800 170605883 0.000000e+00 2865.0
45 TraesCS5A01G537800 chr2A 95.050 404 20 0 4788 5191 48457625 48458028 3.280000e-178 636.0
46 TraesCS5A01G537800 chr2A 95.902 244 9 1 8083 8325 563713609 563713852 2.180000e-105 394.0
47 TraesCS5A01G537800 chr2A 92.453 212 11 2 1 210 713226246 713226454 1.760000e-76 298.0
48 TraesCS5A01G537800 chr2A 95.105 143 6 1 2565 2706 654337741 654337883 3.020000e-54 224.0
49 TraesCS5A01G537800 chr2A 93.750 144 9 0 2563 2706 689530129 689530272 5.060000e-52 217.0
50 TraesCS5A01G537800 chr4D 90.482 1681 145 11 670 2349 508339232 508340898 0.000000e+00 2204.0
51 TraesCS5A01G537800 chr4D 86.249 1978 237 20 5517 7475 508341016 508342977 0.000000e+00 2113.0
52 TraesCS5A01G537800 chr4D 91.918 1361 108 1 1023 2381 504518201 504519561 0.000000e+00 1903.0
53 TraesCS5A01G537800 chr4D 90.799 1239 107 4 5522 6756 504520349 504521584 0.000000e+00 1650.0
54 TraesCS5A01G537800 chr4D 89.651 744 76 1 6811 7553 504521584 504522327 0.000000e+00 946.0
55 TraesCS5A01G537800 chr4D 90.503 179 17 0 2392 2570 104153251 104153073 3.880000e-58 237.0
56 TraesCS5A01G537800 chr4D 90.556 180 16 1 2392 2570 214923944 214924123 3.880000e-58 237.0
57 TraesCS5A01G537800 chr4D 88.312 154 8 1 4632 4775 85684107 85683954 8.590000e-40 176.0
58 TraesCS5A01G537800 chr4D 87.898 157 9 1 4632 4778 89539793 89539949 8.590000e-40 176.0
59 TraesCS5A01G537800 chr4B 85.895 1971 213 38 5518 7460 659499463 659497530 0.000000e+00 2039.0
60 TraesCS5A01G537800 chr4B 88.677 1413 140 13 5518 6915 659483929 659482522 0.000000e+00 1705.0
61 TraesCS5A01G537800 chr4B 86.391 1308 162 8 1048 2341 659485338 659484033 0.000000e+00 1415.0
62 TraesCS5A01G537800 chr4B 86.312 1315 156 13 1048 2341 659513648 659512337 0.000000e+00 1410.0
63 TraesCS5A01G537800 chr4B 85.995 1321 155 17 1048 2341 659500884 659499567 0.000000e+00 1387.0
64 TraesCS5A01G537800 chr4B 94.699 415 22 0 4780 5194 283253182 283253596 0.000000e+00 645.0
65 TraesCS5A01G537800 chr4B 94.217 415 24 0 4780 5194 641518337 641517923 1.180000e-177 634.0
66 TraesCS5A01G537800 chr4B 83.619 525 57 17 6951 7460 659482522 659482012 4.550000e-127 466.0
67 TraesCS5A01G537800 chr4B 94.178 292 11 2 5210 5495 409504398 409504689 2.760000e-119 440.0
68 TraesCS5A01G537800 chr4B 94.366 284 13 2 5210 5490 660362105 660361822 4.620000e-117 433.0
69 TraesCS5A01G537800 chr4B 90.556 180 16 1 2392 2570 29934478 29934299 3.880000e-58 237.0
70 TraesCS5A01G537800 chr4B 87.500 152 19 0 7922 8073 659481869 659481718 8.590000e-40 176.0
71 TraesCS5A01G537800 chr4B 84.868 152 22 1 7922 8073 659497390 659497240 1.450000e-32 152.0
72 TraesCS5A01G537800 chrUn 85.808 1973 216 38 5518 7460 264519337 264521275 0.000000e+00 2034.0
73 TraesCS5A01G537800 chrUn 89.050 895 98 0 1447 2341 264518339 264519233 0.000000e+00 1110.0
74 TraesCS5A01G537800 chrUn 93.471 291 16 3 5210 5497 85411759 85411469 5.970000e-116 429.0
75 TraesCS5A01G537800 chrUn 83.553 152 25 0 7922 8073 264521418 264521569 8.710000e-30 143.0
76 TraesCS5A01G537800 chr7B 95.522 402 18 0 4793 5194 362413692 362413291 1.960000e-180 643.0
77 TraesCS5A01G537800 chr7B 94.118 289 12 4 5210 5495 263793351 263793065 1.280000e-117 435.0
78 TraesCS5A01G537800 chr6B 94.699 415 21 1 4780 5194 670906269 670906682 1.960000e-180 643.0
79 TraesCS5A01G537800 chr6B 92.527 281 16 2 1 279 270780247 270780524 1.680000e-106 398.0
80 TraesCS5A01G537800 chr6B 89.769 303 25 6 7549 7848 4953243 4952944 4.710000e-102 383.0
81 TraesCS5A01G537800 chr6B 89.769 303 25 6 7549 7848 4975625 4975326 4.710000e-102 383.0
82 TraesCS5A01G537800 chr6B 89.109 303 27 6 7549 7848 5033020 5032721 1.020000e-98 372.0
83 TraesCS5A01G537800 chr6B 91.209 273 21 2 10 279 270817462 270817734 1.320000e-97 368.0
84 TraesCS5A01G537800 chr6B 88.119 303 30 6 7549 7848 5004995 5004696 1.030000e-93 355.0
85 TraesCS5A01G537800 chr1B 95.074 406 20 0 4786 5191 340345640 340346045 2.530000e-179 640.0
86 TraesCS5A01G537800 chr1B 94.217 415 22 1 4780 5194 313489511 313489923 4.240000e-177 632.0
87 TraesCS5A01G537800 chr1B 96.624 237 8 0 8089 8325 161974683 161974919 2.180000e-105 394.0
88 TraesCS5A01G537800 chr1B 87.261 157 10 4 4632 4778 631824052 631824208 4.000000e-38 171.0
89 TraesCS5A01G537800 chr1B 91.818 110 9 0 476 585 595331554 595331445 4.020000e-33 154.0
90 TraesCS5A01G537800 chr3B 94.483 290 11 3 5210 5495 412918274 412918562 7.670000e-120 442.0
91 TraesCS5A01G537800 chr5B 94.425 287 14 2 5210 5494 616030579 616030293 2.760000e-119 440.0
92 TraesCS5A01G537800 chr5B 88.742 151 14 2 4632 4781 528709087 528708939 1.850000e-41 182.0
93 TraesCS5A01G537800 chr2B 94.346 283 14 2 5210 5490 582315954 582316236 4.620000e-117 433.0
94 TraesCS5A01G537800 chr2B 91.259 286 21 2 1 282 361646052 361646337 3.640000e-103 387.0
95 TraesCS5A01G537800 chr2B 86.538 156 11 4 4632 4777 341324483 341324328 6.690000e-36 163.0
96 TraesCS5A01G537800 chr2D 92.527 281 19 1 1 279 290742806 290743086 1.300000e-107 401.0
97 TraesCS5A01G537800 chr2D 96.639 238 7 1 8089 8325 90118279 90118042 2.180000e-105 394.0
98 TraesCS5A01G537800 chr2D 93.561 264 16 1 7548 7811 37526875 37526613 7.830000e-105 392.0
99 TraesCS5A01G537800 chr2D 92.481 266 20 0 7550 7815 583317285 583317020 1.700000e-101 381.0
100 TraesCS5A01G537800 chr2D 77.512 209 47 0 6369 6577 12626168 12625960 8.770000e-25 126.0
101 TraesCS5A01G537800 chr7D 93.358 271 16 2 7543 7812 41057251 41057520 4.680000e-107 399.0
102 TraesCS5A01G537800 chr7D 96.624 237 8 0 8089 8325 129855827 129856063 2.180000e-105 394.0
103 TraesCS5A01G537800 chr7D 90.426 188 16 2 2385 2570 119016619 119016432 6.450000e-61 246.0
104 TraesCS5A01G537800 chr7D 95.139 144 7 0 2566 2709 207910944 207910801 2.340000e-55 228.0
105 TraesCS5A01G537800 chr5D 97.009 234 7 0 8092 8325 328932420 328932187 2.180000e-105 394.0
106 TraesCS5A01G537800 chr5D 94.326 141 8 0 2569 2709 284116797 284116657 5.060000e-52 217.0
107 TraesCS5A01G537800 chr3D 96.234 239 9 0 8087 8325 410874858 410874620 7.830000e-105 392.0
108 TraesCS5A01G537800 chr3D 93.750 144 9 0 2566 2709 24203406 24203263 5.060000e-52 217.0
109 TraesCS5A01G537800 chr3D 87.647 170 10 7 4630 4789 111763004 111763172 3.970000e-43 187.0
110 TraesCS5A01G537800 chr6D 93.103 261 17 1 7550 7810 270874224 270873965 1.700000e-101 381.0
111 TraesCS5A01G537800 chr6D 88.235 153 8 1 4632 4774 123976564 123976716 3.090000e-39 174.0
112 TraesCS5A01G537800 chr6D 93.694 111 7 0 4632 4742 465128829 465128939 5.170000e-37 167.0
113 TraesCS5A01G537800 chr1D 94.964 139 7 0 2568 2706 377577483 377577621 1.410000e-52 219.0
114 TraesCS5A01G537800 chr1D 88.961 154 7 1 4632 4775 483105310 483105463 1.850000e-41 182.0
115 TraesCS5A01G537800 chr1D 90.000 110 11 0 476 585 439068362 439068253 8.710000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G537800 chr5A 694550658 694558982 8324 False 15337.000000 15337 100.000000 1 8325 1 chr5A.!!$F4 8324
1 TraesCS5A01G537800 chr5A 694530227 694538576 8349 False 5510.000000 6117 99.459500 1 8325 2 chr5A.!!$F6 8324
2 TraesCS5A01G537800 chr5A 694571029 694580513 9484 False 5051.000000 5077 99.517500 1 8325 2 chr5A.!!$F7 8324
3 TraesCS5A01G537800 chr5A 75362484 75364404 1920 False 3035.000000 3035 95.166000 2708 4630 1 chr5A.!!$F1 1922
4 TraesCS5A01G537800 chr5A 704452042 704453105 1063 False 1024.000000 1024 84.235000 5627 6684 1 chr5A.!!$F5 1057
5 TraesCS5A01G537800 chr5A 704367642 704371920 4278 False 1009.300000 2034 91.109500 670 7475 4 chr5A.!!$F8 6805
6 TraesCS5A01G537800 chr3A 666225342 666227262 1920 True 2977.000000 2977 94.641000 2708 4628 1 chr3A.!!$R2 1920
7 TraesCS5A01G537800 chr4A 157391905 157393828 1923 True 2939.000000 2939 94.237000 2708 4632 1 chr4A.!!$R1 1924
8 TraesCS5A01G537800 chr4A 537235217 537237141 1924 True 2867.000000 2867 93.523000 2706 4635 1 chr4A.!!$R3 1929
9 TraesCS5A01G537800 chr6A 479045353 479047281 1928 True 2891.000000 2891 93.727000 2706 4633 1 chr6A.!!$R3 1927
10 TraesCS5A01G537800 chr6A 584961756 584963674 1918 False 2876.000000 2876 93.704000 2708 4628 1 chr6A.!!$F3 1920
11 TraesCS5A01G537800 chr1A 439075103 439077040 1937 False 2878.000000 2878 93.515000 2706 4639 1 chr1A.!!$F2 1933
12 TraesCS5A01G537800 chr7A 104645191 104647083 1892 False 2876.000000 2876 94.056000 2733 4632 1 chr7A.!!$F1 1899
13 TraesCS5A01G537800 chr2A 170605883 170607800 1917 True 2865.000000 2865 93.582000 2705 4632 1 chr2A.!!$R1 1927
14 TraesCS5A01G537800 chr4D 508339232 508342977 3745 False 2158.500000 2204 88.365500 670 7475 2 chr4D.!!$F4 6805
15 TraesCS5A01G537800 chr4D 504518201 504522327 4126 False 1499.666667 1903 90.789333 1023 7553 3 chr4D.!!$F3 6530
16 TraesCS5A01G537800 chr4B 659512337 659513648 1311 True 1410.000000 1410 86.312000 1048 2341 1 chr4B.!!$R3 1293
17 TraesCS5A01G537800 chr4B 659497240 659500884 3644 True 1192.666667 2039 85.586000 1048 8073 3 chr4B.!!$R6 7025
18 TraesCS5A01G537800 chr4B 659481718 659485338 3620 True 940.500000 1705 86.546750 1048 8073 4 chr4B.!!$R5 7025
19 TraesCS5A01G537800 chrUn 264518339 264521569 3230 False 1095.666667 2034 86.137000 1447 8073 3 chrUn.!!$F1 6626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 5.240713 GCTGCTGCAATTGTTATTCTAGT 57.759 39.130 11.11 0.0 39.41 2.57 F
3300 4117 3.046087 TCGTCGTCGAGCTCCGTT 61.046 61.111 8.47 0.0 41.35 4.44 F
3814 4631 0.725117 CTCGAAATACGCCACCCAAC 59.275 55.000 0.00 0.0 42.26 3.77 F
5405 7171 1.435577 CGCAAGTGGTGGTAACTACC 58.564 55.000 0.00 0.0 46.62 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3367 4184 0.541764 AAGCCAAAAATGGAGCCGGA 60.542 50.000 5.05 0.0 0.00 5.14 R
5167 6933 1.270465 GGTAGTTACCACCACTTGCGT 60.270 52.381 3.45 0.0 45.73 5.24 R
7138 9731 1.367471 CTGCACCGACAAGAGTCCA 59.633 57.895 0.00 0.0 41.87 4.02 R
8199 10855 5.593909 AGATGTGGTTCAATTGACAACTCAA 59.406 36.000 7.89 0.0 40.77 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.240713 GCTGCTGCAATTGTTATTCTAGT 57.759 39.130 11.11 0.00 39.41 2.57
3300 4117 3.046087 TCGTCGTCGAGCTCCGTT 61.046 61.111 8.47 0.00 41.35 4.44
3814 4631 0.725117 CTCGAAATACGCCACCCAAC 59.275 55.000 0.00 0.00 42.26 3.77
3977 4794 3.975591 TCTCCACCCCGTCGGTCT 61.976 66.667 11.06 0.00 43.58 3.85
4782 5612 5.475564 TGAACCAAACAAGGCCTTAGAATAC 59.524 40.000 20.00 6.72 0.00 1.89
4855 6421 3.953542 AGGGAAAATCCATCCTACCAC 57.046 47.619 0.00 0.00 38.64 4.16
4856 6422 2.514160 AGGGAAAATCCATCCTACCACC 59.486 50.000 0.00 0.00 38.64 4.61
4857 6423 2.424379 GGGAAAATCCATCCTACCACCC 60.424 54.545 0.00 0.00 38.64 4.61
4858 6424 2.572290 GAAAATCCATCCTACCACCCG 58.428 52.381 0.00 0.00 0.00 5.28
4871 6437 1.598517 CACCCGGTGGTAGTTACCC 59.401 63.158 9.99 0.00 45.57 3.69
4873 6439 1.613035 CCCGGTGGTAGTTACCCCA 60.613 63.158 0.00 0.00 45.87 4.96
4880 6446 2.910544 TGGTAGTTACCCCACATGTCT 58.089 47.619 0.00 0.00 45.87 3.41
4881 6447 2.835764 TGGTAGTTACCCCACATGTCTC 59.164 50.000 0.00 0.00 45.87 3.36
4882 6448 2.835764 GGTAGTTACCCCACATGTCTCA 59.164 50.000 0.00 0.00 40.53 3.27
4884 6450 4.652421 GGTAGTTACCCCACATGTCTCATA 59.348 45.833 0.00 0.00 40.53 2.15
4885 6451 5.307196 GGTAGTTACCCCACATGTCTCATAT 59.693 44.000 0.00 0.00 40.53 1.78
4886 6452 6.495872 GGTAGTTACCCCACATGTCTCATATA 59.504 42.308 0.00 0.00 40.53 0.86
4887 6453 6.420913 AGTTACCCCACATGTCTCATATAC 57.579 41.667 0.00 0.00 0.00 1.47
4889 6455 7.302948 AGTTACCCCACATGTCTCATATACTA 58.697 38.462 0.00 0.00 0.00 1.82
4890 6456 7.232941 AGTTACCCCACATGTCTCATATACTAC 59.767 40.741 0.00 0.00 0.00 2.73
4891 6457 4.838986 ACCCCACATGTCTCATATACTACC 59.161 45.833 0.00 0.00 0.00 3.18
4892 6458 4.838423 CCCCACATGTCTCATATACTACCA 59.162 45.833 0.00 0.00 0.00 3.25
4894 6460 6.401394 CCCACATGTCTCATATACTACCATG 58.599 44.000 0.00 0.00 0.00 3.66
4897 6463 6.870439 CACATGTCTCATATACTACCATGTGG 59.130 42.308 17.61 0.00 41.82 4.17
5045 6811 9.976255 GTACATATTTGTACGTAAAAATGAGCA 57.024 29.630 26.93 12.38 46.32 4.26
5067 6833 9.319143 GAGCATACTCAAAAAGTGATACATACT 57.681 33.333 0.00 0.00 42.93 2.12
5127 6893 9.255304 TGTTATATACTACATACGACACGTACA 57.745 33.333 6.17 0.00 45.07 2.90
5131 6897 7.953158 ATACTACATACGACACGTACATACT 57.047 36.000 6.17 0.00 45.07 2.12
5132 6898 6.279227 ACTACATACGACACGTACATACTC 57.721 41.667 6.17 0.00 45.07 2.59
5133 6899 6.045318 ACTACATACGACACGTACATACTCT 58.955 40.000 6.17 0.00 45.07 3.24
5134 6900 5.401033 ACATACGACACGTACATACTCTC 57.599 43.478 6.17 0.00 45.07 3.20
5135 6901 4.026228 ACATACGACACGTACATACTCTCG 60.026 45.833 6.17 0.00 45.07 4.04
5136 6902 1.662629 ACGACACGTACATACTCTCGG 59.337 52.381 0.00 0.00 38.73 4.63
5137 6903 1.662629 CGACACGTACATACTCTCGGT 59.337 52.381 0.00 0.00 0.00 4.69
5138 6904 2.094894 CGACACGTACATACTCTCGGTT 59.905 50.000 0.00 0.00 0.00 4.44
5139 6905 3.678662 GACACGTACATACTCTCGGTTC 58.321 50.000 0.00 0.00 0.00 3.62
5140 6906 2.421424 ACACGTACATACTCTCGGTTCC 59.579 50.000 0.00 0.00 0.00 3.62
5141 6907 1.667724 ACGTACATACTCTCGGTTCCG 59.332 52.381 4.74 4.74 0.00 4.30
5142 6908 1.935873 CGTACATACTCTCGGTTCCGA 59.064 52.381 13.34 13.34 36.95 4.55
5143 6909 2.286067 CGTACATACTCTCGGTTCCGAC 60.286 54.545 10.00 0.00 34.59 4.79
5144 6910 1.830279 ACATACTCTCGGTTCCGACA 58.170 50.000 10.00 0.00 34.59 4.35
5145 6911 1.743958 ACATACTCTCGGTTCCGACAG 59.256 52.381 10.00 11.88 34.59 3.51
5146 6912 2.014857 CATACTCTCGGTTCCGACAGA 58.985 52.381 19.84 11.81 34.59 3.41
5147 6913 2.414994 TACTCTCGGTTCCGACAGAT 57.585 50.000 19.84 9.17 34.59 2.90
5148 6914 2.414994 ACTCTCGGTTCCGACAGATA 57.585 50.000 19.84 0.00 34.59 1.98
5149 6915 2.015587 ACTCTCGGTTCCGACAGATAC 58.984 52.381 19.84 0.00 34.59 2.24
5150 6916 2.290464 CTCTCGGTTCCGACAGATACT 58.710 52.381 10.00 0.00 34.59 2.12
5151 6917 3.118482 ACTCTCGGTTCCGACAGATACTA 60.118 47.826 19.84 0.00 34.59 1.82
5152 6918 3.201290 TCTCGGTTCCGACAGATACTAC 58.799 50.000 10.00 0.00 34.59 2.73
5153 6919 2.941064 CTCGGTTCCGACAGATACTACA 59.059 50.000 10.00 0.00 34.59 2.74
5154 6920 3.548770 TCGGTTCCGACAGATACTACAT 58.451 45.455 10.00 0.00 33.26 2.29
5155 6921 4.707105 TCGGTTCCGACAGATACTACATA 58.293 43.478 10.00 0.00 33.26 2.29
5156 6922 4.512944 TCGGTTCCGACAGATACTACATAC 59.487 45.833 10.00 0.00 33.26 2.39
5157 6923 4.274214 CGGTTCCGACAGATACTACATACA 59.726 45.833 5.19 0.00 0.00 2.29
5158 6924 5.220912 CGGTTCCGACAGATACTACATACAA 60.221 44.000 5.19 0.00 0.00 2.41
5159 6925 5.975939 GGTTCCGACAGATACTACATACAAC 59.024 44.000 0.00 0.00 0.00 3.32
5160 6926 6.405065 GGTTCCGACAGATACTACATACAACA 60.405 42.308 0.00 0.00 0.00 3.33
5161 6927 6.954487 TCCGACAGATACTACATACAACAT 57.046 37.500 0.00 0.00 0.00 2.71
5162 6928 8.347771 GTTCCGACAGATACTACATACAACATA 58.652 37.037 0.00 0.00 0.00 2.29
5163 6929 7.868775 TCCGACAGATACTACATACAACATAC 58.131 38.462 0.00 0.00 0.00 2.39
5164 6930 7.499895 TCCGACAGATACTACATACAACATACA 59.500 37.037 0.00 0.00 0.00 2.29
5165 6931 8.132995 CCGACAGATACTACATACAACATACAA 58.867 37.037 0.00 0.00 0.00 2.41
5166 6932 9.511144 CGACAGATACTACATACAACATACAAA 57.489 33.333 0.00 0.00 0.00 2.83
5170 6936 8.814235 AGATACTACATACAACATACAAAACGC 58.186 33.333 0.00 0.00 0.00 4.84
5171 6937 6.788684 ACTACATACAACATACAAAACGCA 57.211 33.333 0.00 0.00 0.00 5.24
5172 6938 7.192148 ACTACATACAACATACAAAACGCAA 57.808 32.000 0.00 0.00 0.00 4.85
5285 7051 9.672673 AAGCATACTCAAAAAGTGATACATACT 57.327 29.630 0.00 0.00 39.11 2.12
5345 7111 9.255304 TGTTATATACTACATACGACACGTACA 57.745 33.333 6.17 0.00 45.07 2.90
5349 7115 7.953158 ATACTACATACGACACGTACATACT 57.047 36.000 6.17 0.00 45.07 2.12
5350 7116 6.279227 ACTACATACGACACGTACATACTC 57.721 41.667 6.17 0.00 45.07 2.59
5351 7117 6.045318 ACTACATACGACACGTACATACTCT 58.955 40.000 6.17 0.00 45.07 3.24
5352 7118 5.401033 ACATACGACACGTACATACTCTC 57.599 43.478 6.17 0.00 45.07 3.20
5353 7119 4.026228 ACATACGACACGTACATACTCTCG 60.026 45.833 6.17 0.00 45.07 4.04
5354 7120 1.662629 ACGACACGTACATACTCTCGG 59.337 52.381 0.00 0.00 38.73 4.63
5355 7121 1.662629 CGACACGTACATACTCTCGGT 59.337 52.381 0.00 0.00 0.00 4.69
5356 7122 2.094894 CGACACGTACATACTCTCGGTT 59.905 50.000 0.00 0.00 0.00 4.44
5357 7123 3.678662 GACACGTACATACTCTCGGTTC 58.321 50.000 0.00 0.00 0.00 3.62
5358 7124 2.421424 ACACGTACATACTCTCGGTTCC 59.579 50.000 0.00 0.00 0.00 3.62
5359 7125 1.667724 ACGTACATACTCTCGGTTCCG 59.332 52.381 4.74 4.74 0.00 4.30
5360 7126 1.935873 CGTACATACTCTCGGTTCCGA 59.064 52.381 13.34 13.34 36.95 4.55
5361 7127 2.286067 CGTACATACTCTCGGTTCCGAC 60.286 54.545 10.00 0.00 34.59 4.79
5362 7128 1.830279 ACATACTCTCGGTTCCGACA 58.170 50.000 10.00 0.00 34.59 4.35
5363 7129 1.743958 ACATACTCTCGGTTCCGACAG 59.256 52.381 10.00 11.88 34.59 3.51
5364 7130 2.014857 CATACTCTCGGTTCCGACAGA 58.985 52.381 19.84 11.81 34.59 3.41
5365 7131 2.414994 TACTCTCGGTTCCGACAGAT 57.585 50.000 19.84 9.17 34.59 2.90
5366 7132 2.414994 ACTCTCGGTTCCGACAGATA 57.585 50.000 19.84 0.00 34.59 1.98
5367 7133 2.015587 ACTCTCGGTTCCGACAGATAC 58.984 52.381 19.84 0.00 34.59 2.24
5368 7134 2.290464 CTCTCGGTTCCGACAGATACT 58.710 52.381 10.00 0.00 34.59 2.12
5369 7135 3.118482 ACTCTCGGTTCCGACAGATACTA 60.118 47.826 19.84 0.00 34.59 1.82
5370 7136 3.201290 TCTCGGTTCCGACAGATACTAC 58.799 50.000 10.00 0.00 34.59 2.73
5371 7137 2.941064 CTCGGTTCCGACAGATACTACA 59.059 50.000 10.00 0.00 34.59 2.74
5372 7138 3.548770 TCGGTTCCGACAGATACTACAT 58.451 45.455 10.00 0.00 33.26 2.29
5373 7139 4.707105 TCGGTTCCGACAGATACTACATA 58.293 43.478 10.00 0.00 33.26 2.29
5374 7140 4.512944 TCGGTTCCGACAGATACTACATAC 59.487 45.833 10.00 0.00 33.26 2.39
5375 7141 4.274214 CGGTTCCGACAGATACTACATACA 59.726 45.833 5.19 0.00 0.00 2.29
5376 7142 5.220912 CGGTTCCGACAGATACTACATACAA 60.221 44.000 5.19 0.00 0.00 2.41
5377 7143 5.975939 GGTTCCGACAGATACTACATACAAC 59.024 44.000 0.00 0.00 0.00 3.32
5378 7144 6.405065 GGTTCCGACAGATACTACATACAACA 60.405 42.308 0.00 0.00 0.00 3.33
5379 7145 6.954487 TCCGACAGATACTACATACAACAT 57.046 37.500 0.00 0.00 0.00 2.71
5380 7146 8.347771 GTTCCGACAGATACTACATACAACATA 58.652 37.037 0.00 0.00 0.00 2.29
5381 7147 7.868775 TCCGACAGATACTACATACAACATAC 58.131 38.462 0.00 0.00 0.00 2.39
5382 7148 7.499895 TCCGACAGATACTACATACAACATACA 59.500 37.037 0.00 0.00 0.00 2.29
5383 7149 8.132995 CCGACAGATACTACATACAACATACAA 58.867 37.037 0.00 0.00 0.00 2.41
5384 7150 9.511144 CGACAGATACTACATACAACATACAAA 57.489 33.333 0.00 0.00 0.00 2.83
5388 7154 8.814235 AGATACTACATACAACATACAAAACGC 58.186 33.333 0.00 0.00 0.00 4.84
5389 7155 6.788684 ACTACATACAACATACAAAACGCA 57.211 33.333 0.00 0.00 0.00 5.24
5390 7156 7.192148 ACTACATACAACATACAAAACGCAA 57.808 32.000 0.00 0.00 0.00 4.85
5405 7171 1.435577 CGCAAGTGGTGGTAACTACC 58.564 55.000 0.00 0.00 46.62 3.18
5417 7183 3.858247 GGTAACTACCACTGCTTGTAGG 58.142 50.000 0.80 0.00 45.73 3.18
5418 7184 3.512724 GGTAACTACCACTGCTTGTAGGA 59.487 47.826 0.80 0.00 45.73 2.94
5419 7185 4.020839 GGTAACTACCACTGCTTGTAGGAA 60.021 45.833 0.80 0.00 45.73 3.36
5577 8133 6.136071 CACTAACAAACTTTGGTGATTCTCG 58.864 40.000 2.05 0.00 39.63 4.04
5897 8458 4.734398 TTTTGAACTTCATGGCACTTGT 57.266 36.364 0.00 0.00 0.00 3.16
6289 8862 9.349713 AGTTTGGATTACTTCATTTTCAGTACA 57.650 29.630 0.00 0.00 0.00 2.90
6337 8915 5.642063 TCTCTATTTTCGGTCAAACATCACC 59.358 40.000 0.00 0.00 0.00 4.02
6484 9062 9.512588 GATTCCAGATTGGTTATGATTCATAGT 57.487 33.333 6.48 0.00 39.03 2.12
7138 9731 2.103771 AGCTCTACGATGCATCCATGTT 59.896 45.455 20.87 3.22 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.104671 GCAGGAGCAAGCAAACCAAA 59.895 50.000 0.00 0.00 41.58 3.28
3367 4184 0.541764 AAGCCAAAAATGGAGCCGGA 60.542 50.000 5.05 0.00 0.00 5.14
3376 4193 2.742774 GCACTTCGTCAAGCCAAAAAT 58.257 42.857 0.00 0.00 32.09 1.82
3378 4195 0.028770 CGCACTTCGTCAAGCCAAAA 59.971 50.000 0.00 0.00 32.09 2.44
4829 6395 9.004231 GTGGTAGGATGGATTTTCCCTATATAT 57.996 37.037 0.00 0.00 35.03 0.86
4830 6396 7.404980 GGTGGTAGGATGGATTTTCCCTATATA 59.595 40.741 0.00 0.00 35.03 0.86
4831 6397 6.217693 GGTGGTAGGATGGATTTTCCCTATAT 59.782 42.308 0.00 0.00 35.03 0.86
4833 6399 4.354087 GGTGGTAGGATGGATTTTCCCTAT 59.646 45.833 0.00 0.00 35.03 2.57
4835 6401 2.514160 GGTGGTAGGATGGATTTTCCCT 59.486 50.000 0.00 0.00 35.03 4.20
4836 6402 2.424379 GGGTGGTAGGATGGATTTTCCC 60.424 54.545 0.00 0.00 35.03 3.97
4837 6403 2.748465 CGGGTGGTAGGATGGATTTTCC 60.748 54.545 0.00 0.00 36.96 3.13
4838 6404 2.572290 CGGGTGGTAGGATGGATTTTC 58.428 52.381 0.00 0.00 0.00 2.29
4841 6407 2.539983 CCGGGTGGTAGGATGGATT 58.460 57.895 0.00 0.00 0.00 3.01
4842 6408 4.313523 CCGGGTGGTAGGATGGAT 57.686 61.111 0.00 0.00 0.00 3.41
4871 6437 6.997655 ACATGGTAGTATATGAGACATGTGG 58.002 40.000 1.15 0.00 43.84 4.17
4873 6439 6.997655 CCACATGGTAGTATATGAGACATGT 58.002 40.000 0.00 0.00 45.67 3.21
5025 6791 8.941977 TGAGTATGCTCATTTTTACGTACAAAT 58.058 29.630 9.69 12.75 45.94 2.32
5026 6792 8.312896 TGAGTATGCTCATTTTTACGTACAAA 57.687 30.769 9.69 9.18 45.94 2.83
5027 6793 7.892778 TGAGTATGCTCATTTTTACGTACAA 57.107 32.000 9.69 0.00 45.94 2.41
5041 6807 9.319143 AGTATGTATCACTTTTTGAGTATGCTC 57.681 33.333 3.51 3.51 37.77 4.26
5101 6867 9.255304 TGTACGTGTCGTATGTAGTATATAACA 57.745 33.333 0.00 0.00 44.12 2.41
5105 6871 9.645059 AGTATGTACGTGTCGTATGTAGTATAT 57.355 33.333 0.00 0.00 44.12 0.86
5106 6872 9.129209 GAGTATGTACGTGTCGTATGTAGTATA 57.871 37.037 0.00 0.00 44.12 1.47
5107 6873 7.869937 AGAGTATGTACGTGTCGTATGTAGTAT 59.130 37.037 0.00 1.05 44.12 2.12
5108 6874 7.203218 AGAGTATGTACGTGTCGTATGTAGTA 58.797 38.462 0.00 0.00 44.12 1.82
5110 6876 6.522233 AGAGTATGTACGTGTCGTATGTAG 57.478 41.667 0.00 0.00 44.12 2.74
5111 6877 5.173854 CGAGAGTATGTACGTGTCGTATGTA 59.826 44.000 0.00 0.41 44.12 2.29
5112 6878 4.026228 CGAGAGTATGTACGTGTCGTATGT 60.026 45.833 0.00 1.23 44.12 2.29
5113 6879 4.443586 CGAGAGTATGTACGTGTCGTATG 58.556 47.826 0.00 0.00 44.12 2.39
5114 6880 3.492383 CCGAGAGTATGTACGTGTCGTAT 59.508 47.826 0.00 0.00 44.12 3.06
5115 6881 2.860136 CCGAGAGTATGTACGTGTCGTA 59.140 50.000 0.00 0.00 41.54 3.43
5116 6882 1.662629 CCGAGAGTATGTACGTGTCGT 59.337 52.381 0.00 0.00 44.35 4.34
5117 6883 1.662629 ACCGAGAGTATGTACGTGTCG 59.337 52.381 0.00 1.45 0.00 4.35
5119 6885 2.421424 GGAACCGAGAGTATGTACGTGT 59.579 50.000 0.00 0.00 0.00 4.49
5120 6886 2.538333 CGGAACCGAGAGTATGTACGTG 60.538 54.545 7.53 0.00 42.83 4.49
5121 6887 1.667724 CGGAACCGAGAGTATGTACGT 59.332 52.381 7.53 0.00 42.83 3.57
5122 6888 1.935873 TCGGAACCGAGAGTATGTACG 59.064 52.381 12.04 0.00 44.01 3.67
5133 6899 2.989909 TGTAGTATCTGTCGGAACCGA 58.010 47.619 12.04 12.04 46.87 4.69
5134 6900 3.984508 ATGTAGTATCTGTCGGAACCG 57.015 47.619 6.94 6.94 41.35 4.44
5135 6901 5.762825 TGTATGTAGTATCTGTCGGAACC 57.237 43.478 0.00 0.00 0.00 3.62
5136 6902 6.558009 TGTTGTATGTAGTATCTGTCGGAAC 58.442 40.000 0.00 0.00 0.00 3.62
5137 6903 6.762702 TGTTGTATGTAGTATCTGTCGGAA 57.237 37.500 0.00 0.00 0.00 4.30
5138 6904 6.954487 ATGTTGTATGTAGTATCTGTCGGA 57.046 37.500 0.00 0.00 0.00 4.55
5139 6905 7.645402 TGTATGTTGTATGTAGTATCTGTCGG 58.355 38.462 0.00 0.00 0.00 4.79
5140 6906 9.511144 TTTGTATGTTGTATGTAGTATCTGTCG 57.489 33.333 0.00 0.00 0.00 4.35
5144 6910 8.814235 GCGTTTTGTATGTTGTATGTAGTATCT 58.186 33.333 0.00 0.00 0.00 1.98
5145 6911 8.597227 TGCGTTTTGTATGTTGTATGTAGTATC 58.403 33.333 0.00 0.00 0.00 2.24
5146 6912 8.481974 TGCGTTTTGTATGTTGTATGTAGTAT 57.518 30.769 0.00 0.00 0.00 2.12
5147 6913 7.886405 TGCGTTTTGTATGTTGTATGTAGTA 57.114 32.000 0.00 0.00 0.00 1.82
5148 6914 6.788684 TGCGTTTTGTATGTTGTATGTAGT 57.211 33.333 0.00 0.00 0.00 2.73
5149 6915 7.268235 CACTTGCGTTTTGTATGTTGTATGTAG 59.732 37.037 0.00 0.00 0.00 2.74
5150 6916 7.072647 CACTTGCGTTTTGTATGTTGTATGTA 58.927 34.615 0.00 0.00 0.00 2.29
5151 6917 5.912396 CACTTGCGTTTTGTATGTTGTATGT 59.088 36.000 0.00 0.00 0.00 2.29
5152 6918 5.341993 CCACTTGCGTTTTGTATGTTGTATG 59.658 40.000 0.00 0.00 0.00 2.39
5153 6919 5.009210 ACCACTTGCGTTTTGTATGTTGTAT 59.991 36.000 0.00 0.00 0.00 2.29
5154 6920 4.335874 ACCACTTGCGTTTTGTATGTTGTA 59.664 37.500 0.00 0.00 0.00 2.41
5155 6921 3.129638 ACCACTTGCGTTTTGTATGTTGT 59.870 39.130 0.00 0.00 0.00 3.32
5156 6922 3.485378 CACCACTTGCGTTTTGTATGTTG 59.515 43.478 0.00 0.00 0.00 3.33
5157 6923 3.490078 CCACCACTTGCGTTTTGTATGTT 60.490 43.478 0.00 0.00 0.00 2.71
5158 6924 2.034053 CCACCACTTGCGTTTTGTATGT 59.966 45.455 0.00 0.00 0.00 2.29
5159 6925 2.034053 ACCACCACTTGCGTTTTGTATG 59.966 45.455 0.00 0.00 0.00 2.39
5160 6926 2.303175 ACCACCACTTGCGTTTTGTAT 58.697 42.857 0.00 0.00 0.00 2.29
5161 6927 1.752683 ACCACCACTTGCGTTTTGTA 58.247 45.000 0.00 0.00 0.00 2.41
5162 6928 1.752683 TACCACCACTTGCGTTTTGT 58.247 45.000 0.00 0.00 0.00 2.83
5163 6929 2.098443 AGTTACCACCACTTGCGTTTTG 59.902 45.455 0.00 0.00 0.00 2.44
5164 6930 2.371306 AGTTACCACCACTTGCGTTTT 58.629 42.857 0.00 0.00 0.00 2.43
5165 6931 2.047002 AGTTACCACCACTTGCGTTT 57.953 45.000 0.00 0.00 0.00 3.60
5166 6932 2.486918 GTAGTTACCACCACTTGCGTT 58.513 47.619 0.00 0.00 0.00 4.84
5167 6933 1.270465 GGTAGTTACCACCACTTGCGT 60.270 52.381 3.45 0.00 45.73 5.24
5168 6934 1.435577 GGTAGTTACCACCACTTGCG 58.564 55.000 3.45 0.00 45.73 4.85
5259 7025 9.672673 AGTATGTATCACTTTTTGAGTATGCTT 57.327 29.630 0.00 0.00 37.77 3.91
5319 7085 9.255304 TGTACGTGTCGTATGTAGTATATAACA 57.745 33.333 0.00 0.00 44.12 2.41
5323 7089 9.645059 AGTATGTACGTGTCGTATGTAGTATAT 57.355 33.333 0.00 0.00 44.12 0.86
5324 7090 9.129209 GAGTATGTACGTGTCGTATGTAGTATA 57.871 37.037 0.00 0.00 44.12 1.47
5325 7091 7.869937 AGAGTATGTACGTGTCGTATGTAGTAT 59.130 37.037 0.00 1.05 44.12 2.12
5326 7092 7.203218 AGAGTATGTACGTGTCGTATGTAGTA 58.797 38.462 0.00 0.00 44.12 1.82
5327 7093 6.045318 AGAGTATGTACGTGTCGTATGTAGT 58.955 40.000 0.00 5.12 44.12 2.73
5328 7094 6.522233 AGAGTATGTACGTGTCGTATGTAG 57.478 41.667 0.00 0.00 44.12 2.74
5329 7095 5.173854 CGAGAGTATGTACGTGTCGTATGTA 59.826 44.000 0.00 0.41 44.12 2.29
5330 7096 4.026228 CGAGAGTATGTACGTGTCGTATGT 60.026 45.833 0.00 1.23 44.12 2.29
5331 7097 4.443586 CGAGAGTATGTACGTGTCGTATG 58.556 47.826 0.00 0.00 44.12 2.39
5332 7098 3.492383 CCGAGAGTATGTACGTGTCGTAT 59.508 47.826 0.00 0.00 44.12 3.06
5333 7099 2.860136 CCGAGAGTATGTACGTGTCGTA 59.140 50.000 0.00 0.00 41.54 3.43
5334 7100 1.662629 CCGAGAGTATGTACGTGTCGT 59.337 52.381 0.00 0.00 44.35 4.34
5335 7101 1.662629 ACCGAGAGTATGTACGTGTCG 59.337 52.381 0.00 1.45 0.00 4.35
5336 7102 3.486542 GGAACCGAGAGTATGTACGTGTC 60.487 52.174 0.00 0.00 0.00 3.67
5337 7103 2.421424 GGAACCGAGAGTATGTACGTGT 59.579 50.000 0.00 0.00 0.00 4.49
5338 7104 2.538333 CGGAACCGAGAGTATGTACGTG 60.538 54.545 7.53 0.00 42.83 4.49
5339 7105 1.667724 CGGAACCGAGAGTATGTACGT 59.332 52.381 7.53 0.00 42.83 3.57
5340 7106 1.935873 TCGGAACCGAGAGTATGTACG 59.064 52.381 12.04 0.00 44.01 3.67
5351 7117 2.989909 TGTAGTATCTGTCGGAACCGA 58.010 47.619 12.04 12.04 46.87 4.69
5352 7118 3.984508 ATGTAGTATCTGTCGGAACCG 57.015 47.619 6.94 6.94 41.35 4.44
5353 7119 5.762825 TGTATGTAGTATCTGTCGGAACC 57.237 43.478 0.00 0.00 0.00 3.62
5354 7120 6.558009 TGTTGTATGTAGTATCTGTCGGAAC 58.442 40.000 0.00 0.00 0.00 3.62
5355 7121 6.762702 TGTTGTATGTAGTATCTGTCGGAA 57.237 37.500 0.00 0.00 0.00 4.30
5356 7122 6.954487 ATGTTGTATGTAGTATCTGTCGGA 57.046 37.500 0.00 0.00 0.00 4.55
5357 7123 7.645402 TGTATGTTGTATGTAGTATCTGTCGG 58.355 38.462 0.00 0.00 0.00 4.79
5358 7124 9.511144 TTTGTATGTTGTATGTAGTATCTGTCG 57.489 33.333 0.00 0.00 0.00 4.35
5362 7128 8.814235 GCGTTTTGTATGTTGTATGTAGTATCT 58.186 33.333 0.00 0.00 0.00 1.98
5363 7129 8.597227 TGCGTTTTGTATGTTGTATGTAGTATC 58.403 33.333 0.00 0.00 0.00 2.24
5364 7130 8.481974 TGCGTTTTGTATGTTGTATGTAGTAT 57.518 30.769 0.00 0.00 0.00 2.12
5365 7131 7.886405 TGCGTTTTGTATGTTGTATGTAGTA 57.114 32.000 0.00 0.00 0.00 1.82
5366 7132 6.788684 TGCGTTTTGTATGTTGTATGTAGT 57.211 33.333 0.00 0.00 0.00 2.73
5367 7133 7.268235 CACTTGCGTTTTGTATGTTGTATGTAG 59.732 37.037 0.00 0.00 0.00 2.74
5368 7134 7.072647 CACTTGCGTTTTGTATGTTGTATGTA 58.927 34.615 0.00 0.00 0.00 2.29
5369 7135 5.912396 CACTTGCGTTTTGTATGTTGTATGT 59.088 36.000 0.00 0.00 0.00 2.29
5370 7136 5.341993 CCACTTGCGTTTTGTATGTTGTATG 59.658 40.000 0.00 0.00 0.00 2.39
5371 7137 5.009210 ACCACTTGCGTTTTGTATGTTGTAT 59.991 36.000 0.00 0.00 0.00 2.29
5372 7138 4.335874 ACCACTTGCGTTTTGTATGTTGTA 59.664 37.500 0.00 0.00 0.00 2.41
5373 7139 3.129638 ACCACTTGCGTTTTGTATGTTGT 59.870 39.130 0.00 0.00 0.00 3.32
5374 7140 3.485378 CACCACTTGCGTTTTGTATGTTG 59.515 43.478 0.00 0.00 0.00 3.33
5375 7141 3.490078 CCACCACTTGCGTTTTGTATGTT 60.490 43.478 0.00 0.00 0.00 2.71
5376 7142 2.034053 CCACCACTTGCGTTTTGTATGT 59.966 45.455 0.00 0.00 0.00 2.29
5377 7143 2.034053 ACCACCACTTGCGTTTTGTATG 59.966 45.455 0.00 0.00 0.00 2.39
5378 7144 2.303175 ACCACCACTTGCGTTTTGTAT 58.697 42.857 0.00 0.00 0.00 2.29
5379 7145 1.752683 ACCACCACTTGCGTTTTGTA 58.247 45.000 0.00 0.00 0.00 2.41
5380 7146 1.752683 TACCACCACTTGCGTTTTGT 58.247 45.000 0.00 0.00 0.00 2.83
5381 7147 2.098443 AGTTACCACCACTTGCGTTTTG 59.902 45.455 0.00 0.00 0.00 2.44
5382 7148 2.371306 AGTTACCACCACTTGCGTTTT 58.629 42.857 0.00 0.00 0.00 2.43
5383 7149 2.047002 AGTTACCACCACTTGCGTTT 57.953 45.000 0.00 0.00 0.00 3.60
5384 7150 2.486918 GTAGTTACCACCACTTGCGTT 58.513 47.619 0.00 0.00 0.00 4.84
5385 7151 1.270465 GGTAGTTACCACCACTTGCGT 60.270 52.381 3.45 0.00 45.73 5.24
5386 7152 1.435577 GGTAGTTACCACCACTTGCG 58.564 55.000 3.45 0.00 45.73 4.85
5396 7162 3.512724 TCCTACAAGCAGTGGTAGTTACC 59.487 47.826 0.00 1.25 46.62 2.85
5397 7163 4.796038 TCCTACAAGCAGTGGTAGTTAC 57.204 45.455 0.00 0.00 36.17 2.50
5398 7164 5.306160 AGTTTCCTACAAGCAGTGGTAGTTA 59.694 40.000 0.00 0.00 36.17 2.24
5399 7165 4.102681 AGTTTCCTACAAGCAGTGGTAGTT 59.897 41.667 0.00 0.00 36.17 2.24
5400 7166 3.646637 AGTTTCCTACAAGCAGTGGTAGT 59.353 43.478 0.00 0.00 36.17 2.73
5401 7167 4.273148 AGTTTCCTACAAGCAGTGGTAG 57.727 45.455 0.00 0.00 37.36 3.18
5402 7168 7.670605 ATATAGTTTCCTACAAGCAGTGGTA 57.329 36.000 0.00 0.00 0.00 3.25
5403 7169 4.910458 ATAGTTTCCTACAAGCAGTGGT 57.090 40.909 0.00 0.00 0.00 4.16
5897 8458 5.181056 TCAGAGAAATTATTTGTCGCAGCAA 59.819 36.000 8.79 0.00 37.93 3.91
6289 8862 4.623932 TTGCAACAGGTGAGTAGAGAAT 57.376 40.909 0.00 0.00 0.00 2.40
6337 8915 6.633668 AAAGTTAGACGAATCATCTTGTCG 57.366 37.500 0.00 0.00 40.56 4.35
6484 9062 2.275134 TGTTGCCTGCTTTGAGATCA 57.725 45.000 0.00 0.00 0.00 2.92
7138 9731 1.367471 CTGCACCGACAAGAGTCCA 59.633 57.895 0.00 0.00 41.87 4.02
8199 10855 5.593909 AGATGTGGTTCAATTGACAACTCAA 59.406 36.000 7.89 0.00 40.77 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.