Multiple sequence alignment - TraesCS5A01G537300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G537300 chr5A 100.000 3224 0 0 1 3224 693675644 693672421 0.000000e+00 5954
1 TraesCS5A01G537300 chr5A 82.451 359 48 4 1862 2220 85164429 85164086 1.880000e-77 300
2 TraesCS5A01G537300 chr5A 77.528 356 60 13 1862 2216 694760251 694760587 2.540000e-46 196
3 TraesCS5A01G537300 chr5A 79.167 168 29 5 68 231 679743700 679743535 9.450000e-21 111
4 TraesCS5A01G537300 chr4B 86.204 2044 112 81 292 2223 659519746 659521731 0.000000e+00 2056
5 TraesCS5A01G537300 chr4B 89.373 367 20 7 2810 3158 659522626 659522991 8.210000e-121 444
6 TraesCS5A01G537300 chr4B 86.441 236 21 4 2407 2641 659521878 659522103 6.910000e-62 248
7 TraesCS5A01G537300 chr4B 76.056 355 64 10 1862 2216 659329679 659329346 7.160000e-37 165
8 TraesCS5A01G537300 chr4D 87.727 1320 82 40 292 1581 508433235 508431966 0.000000e+00 1467
9 TraesCS5A01G537300 chr4D 89.731 633 27 15 1592 2223 508431929 508431334 0.000000e+00 774
10 TraesCS5A01G537300 chr4D 88.934 488 32 10 2757 3224 508430736 508430251 1.670000e-162 582
11 TraesCS5A01G537300 chr4D 82.869 251 24 9 2410 2654 508431175 508430938 1.170000e-49 207
12 TraesCS5A01G537300 chr3A 83.051 472 57 20 885 1343 711203167 711203628 1.080000e-109 407
13 TraesCS5A01G537300 chr3A 91.457 199 13 3 1147 1343 711218311 711218507 1.470000e-68 270
14 TraesCS5A01G537300 chr3A 80.899 356 41 10 1865 2220 711218505 711218833 4.130000e-64 255
15 TraesCS5A01G537300 chr3A 86.124 209 29 0 857 1065 711218022 711218230 3.240000e-55 226
16 TraesCS5A01G537300 chr3A 78.652 356 49 17 1865 2220 711203626 711203954 9.060000e-51 211
17 TraesCS5A01G537300 chr6B 83.799 358 39 8 1865 2220 438386250 438385910 4.010000e-84 322
18 TraesCS5A01G537300 chr6B 91.327 196 17 0 870 1065 438386741 438386546 5.300000e-68 268
19 TraesCS5A01G537300 chr3D 82.787 366 55 5 1862 2223 356778 356417 1.440000e-83 320
20 TraesCS5A01G537300 chr3D 91.080 213 14 4 1146 1355 577264182 577263972 1.890000e-72 283
21 TraesCS5A01G537300 chr3D 92.462 199 11 3 1147 1343 575726347 575726543 6.810000e-72 281
22 TraesCS5A01G537300 chr3D 91.000 200 18 0 1147 1346 391334 391135 1.470000e-68 270
23 TraesCS5A01G537300 chr3D 91.457 199 13 3 1147 1343 577255366 577255170 1.470000e-68 270
24 TraesCS5A01G537300 chr3D 80.337 356 43 10 1865 2220 575726541 575726869 8.930000e-61 244
25 TraesCS5A01G537300 chr3D 87.560 209 26 0 857 1065 575726052 575726260 3.210000e-60 243
26 TraesCS5A01G537300 chr3D 90.857 175 16 0 891 1065 357449 357275 5.380000e-58 235
27 TraesCS5A01G537300 chr3B 82.402 358 54 5 1860 2217 6118428 6118776 1.450000e-78 303
28 TraesCS5A01G537300 chr3B 91.414 198 15 2 1147 1343 766631735 766631931 1.470000e-68 270
29 TraesCS5A01G537300 chr3B 88.038 209 25 0 857 1065 766631439 766631647 6.910000e-62 248
30 TraesCS5A01G537300 chr3B 80.952 189 36 0 2032 2220 768904033 768903845 2.000000e-32 150
31 TraesCS5A01G537300 chr5D 82.451 359 48 4 1862 2220 91405844 91405501 1.880000e-77 300
32 TraesCS5A01G537300 chr5B 81.894 359 50 4 1862 2220 96764634 96764291 4.070000e-74 289
33 TraesCS5A01G537300 chr6D 90.816 196 18 0 870 1065 276456709 276456514 2.470000e-66 263
34 TraesCS5A01G537300 chr6A 90.306 196 19 0 870 1065 399722164 399722359 1.150000e-64 257
35 TraesCS5A01G537300 chr1A 82.682 179 28 3 2040 2216 375112520 375112343 4.310000e-34 156
36 TraesCS5A01G537300 chr1D 80.108 186 33 4 42 224 295544773 295544589 5.610000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G537300 chr5A 693672421 693675644 3223 True 5954.000000 5954 100.000000 1 3224 1 chr5A.!!$R3 3223
1 TraesCS5A01G537300 chr4B 659519746 659522991 3245 False 916.000000 2056 87.339333 292 3158 3 chr4B.!!$F1 2866
2 TraesCS5A01G537300 chr4D 508430251 508433235 2984 True 757.500000 1467 87.315250 292 3224 4 chr4D.!!$R1 2932
3 TraesCS5A01G537300 chr3A 711203167 711203954 787 False 309.000000 407 80.851500 885 2220 2 chr3A.!!$F1 1335
4 TraesCS5A01G537300 chr3A 711218022 711218833 811 False 250.333333 270 86.160000 857 2220 3 chr3A.!!$F2 1363
5 TraesCS5A01G537300 chr6B 438385910 438386741 831 True 295.000000 322 87.563000 870 2220 2 chr6B.!!$R1 1350
6 TraesCS5A01G537300 chr3D 356417 357449 1032 True 277.500000 320 86.822000 891 2223 2 chr3D.!!$R4 1332
7 TraesCS5A01G537300 chr3D 575726052 575726869 817 False 256.000000 281 86.786333 857 2220 3 chr3D.!!$F1 1363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.029567 AACGACGATCATCTCCTCGC 59.970 55.0 0.00 0.0 36.31 5.03 F
1725 2109 0.037232 GGTGTTCTTGGTCGCTAGCT 60.037 55.0 13.93 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1776 2160 0.104855 TGCGATCTCCTATGTGTGGC 59.895 55.0 0.00 0.00 0.00 5.01 R
2632 3061 0.389296 TTGATCACAGGCCGTACGTG 60.389 55.0 15.21 8.67 40.08 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.939783 GTACATACGTCTGCATGAATATACAC 58.060 38.462 0.00 0.00 0.00 2.90
26 27 5.629435 ACATACGTCTGCATGAATATACACG 59.371 40.000 0.00 0.00 0.00 4.49
27 28 2.794910 ACGTCTGCATGAATATACACGC 59.205 45.455 0.00 0.00 0.00 5.34
28 29 2.160104 CGTCTGCATGAATATACACGCG 60.160 50.000 3.53 3.53 31.42 6.01
29 30 1.792367 TCTGCATGAATATACACGCGC 59.208 47.619 5.73 0.00 31.42 6.86
30 31 0.506506 TGCATGAATATACACGCGCG 59.493 50.000 30.96 30.96 31.42 6.86
31 32 0.506932 GCATGAATATACACGCGCGT 59.493 50.000 32.73 32.73 0.00 6.01
40 41 2.874780 CACGCGCGTGGTAGTCTC 60.875 66.667 45.91 0.00 42.00 3.36
41 42 3.054503 ACGCGCGTGGTAGTCTCT 61.055 61.111 37.37 5.31 0.00 3.10
42 43 2.178521 CGCGCGTGGTAGTCTCTT 59.821 61.111 24.19 0.00 0.00 2.85
43 44 1.443872 CGCGCGTGGTAGTCTCTTT 60.444 57.895 24.19 0.00 0.00 2.52
44 45 1.007336 CGCGCGTGGTAGTCTCTTTT 61.007 55.000 24.19 0.00 0.00 2.27
45 46 0.438830 GCGCGTGGTAGTCTCTTTTG 59.561 55.000 8.43 0.00 0.00 2.44
46 47 0.438830 CGCGTGGTAGTCTCTTTTGC 59.561 55.000 0.00 0.00 0.00 3.68
47 48 1.508632 GCGTGGTAGTCTCTTTTGCA 58.491 50.000 0.00 0.00 0.00 4.08
48 49 2.076863 GCGTGGTAGTCTCTTTTGCAT 58.923 47.619 0.00 0.00 0.00 3.96
49 50 2.159653 GCGTGGTAGTCTCTTTTGCATG 60.160 50.000 0.00 0.00 0.00 4.06
50 51 2.416547 CGTGGTAGTCTCTTTTGCATGG 59.583 50.000 0.00 0.00 0.00 3.66
51 52 3.412386 GTGGTAGTCTCTTTTGCATGGT 58.588 45.455 0.00 0.00 0.00 3.55
52 53 4.575885 GTGGTAGTCTCTTTTGCATGGTA 58.424 43.478 0.00 0.00 0.00 3.25
53 54 5.001232 GTGGTAGTCTCTTTTGCATGGTAA 58.999 41.667 0.00 0.00 0.00 2.85
54 55 5.472137 GTGGTAGTCTCTTTTGCATGGTAAA 59.528 40.000 0.00 0.00 0.00 2.01
55 56 6.016610 GTGGTAGTCTCTTTTGCATGGTAAAA 60.017 38.462 0.00 0.00 0.00 1.52
56 57 6.016610 TGGTAGTCTCTTTTGCATGGTAAAAC 60.017 38.462 0.00 0.00 0.00 2.43
57 58 6.016610 GGTAGTCTCTTTTGCATGGTAAAACA 60.017 38.462 0.00 0.00 0.00 2.83
58 59 6.655078 AGTCTCTTTTGCATGGTAAAACAT 57.345 33.333 0.00 0.00 0.00 2.71
69 70 6.704289 CATGGTAAAACATGTCTCATCCAT 57.296 37.500 0.00 7.66 42.48 3.41
70 71 7.806409 CATGGTAAAACATGTCTCATCCATA 57.194 36.000 16.43 0.00 42.48 2.74
71 72 8.400184 CATGGTAAAACATGTCTCATCCATAT 57.600 34.615 16.43 1.92 42.48 1.78
72 73 8.509690 CATGGTAAAACATGTCTCATCCATATC 58.490 37.037 16.43 0.00 42.48 1.63
73 74 7.805163 TGGTAAAACATGTCTCATCCATATCT 58.195 34.615 0.00 0.00 0.00 1.98
74 75 8.933653 TGGTAAAACATGTCTCATCCATATCTA 58.066 33.333 0.00 0.00 0.00 1.98
75 76 9.778741 GGTAAAACATGTCTCATCCATATCTAA 57.221 33.333 0.00 0.00 0.00 2.10
80 81 9.941325 AACATGTCTCATCCATATCTAAAGATC 57.059 33.333 0.00 0.00 36.05 2.75
81 82 9.097946 ACATGTCTCATCCATATCTAAAGATCA 57.902 33.333 0.00 0.00 36.05 2.92
82 83 9.939802 CATGTCTCATCCATATCTAAAGATCAA 57.060 33.333 0.00 0.00 36.05 2.57
105 106 9.932207 TCAAAATACAAGTTAAGTAAGGATCGA 57.068 29.630 0.00 0.00 0.00 3.59
106 107 9.968743 CAAAATACAAGTTAAGTAAGGATCGAC 57.031 33.333 0.00 0.00 0.00 4.20
107 108 9.715121 AAAATACAAGTTAAGTAAGGATCGACA 57.285 29.630 0.00 0.00 0.00 4.35
108 109 9.886132 AAATACAAGTTAAGTAAGGATCGACAT 57.114 29.630 0.00 0.00 0.00 3.06
109 110 8.873215 ATACAAGTTAAGTAAGGATCGACATG 57.127 34.615 0.00 0.00 0.00 3.21
110 111 6.931838 ACAAGTTAAGTAAGGATCGACATGA 58.068 36.000 0.00 0.00 0.00 3.07
111 112 6.812160 ACAAGTTAAGTAAGGATCGACATGAC 59.188 38.462 0.00 0.00 0.00 3.06
112 113 6.525578 AGTTAAGTAAGGATCGACATGACA 57.474 37.500 0.00 0.00 0.00 3.58
113 114 6.931838 AGTTAAGTAAGGATCGACATGACAA 58.068 36.000 0.00 0.00 0.00 3.18
114 115 7.383687 AGTTAAGTAAGGATCGACATGACAAA 58.616 34.615 0.00 0.00 0.00 2.83
115 116 7.876068 AGTTAAGTAAGGATCGACATGACAAAA 59.124 33.333 0.00 0.00 0.00 2.44
116 117 8.665685 GTTAAGTAAGGATCGACATGACAAAAT 58.334 33.333 0.00 0.00 0.00 1.82
117 118 7.687941 AAGTAAGGATCGACATGACAAAATT 57.312 32.000 0.00 0.00 0.00 1.82
118 119 8.786826 AAGTAAGGATCGACATGACAAAATTA 57.213 30.769 0.00 0.00 0.00 1.40
119 120 8.786826 AGTAAGGATCGACATGACAAAATTAA 57.213 30.769 0.00 0.00 0.00 1.40
120 121 9.226606 AGTAAGGATCGACATGACAAAATTAAA 57.773 29.630 0.00 0.00 0.00 1.52
121 122 9.834628 GTAAGGATCGACATGACAAAATTAAAA 57.165 29.630 0.00 0.00 0.00 1.52
123 124 8.970691 AGGATCGACATGACAAAATTAAAAAG 57.029 30.769 0.00 0.00 0.00 2.27
124 125 8.792633 AGGATCGACATGACAAAATTAAAAAGA 58.207 29.630 0.00 0.00 0.00 2.52
125 126 9.573133 GGATCGACATGACAAAATTAAAAAGAT 57.427 29.630 0.00 0.00 0.00 2.40
155 156 6.343716 ACATTTCTATGTTTGATGCCAACA 57.656 33.333 0.00 0.00 42.29 3.33
156 157 6.158598 ACATTTCTATGTTTGATGCCAACAC 58.841 36.000 0.00 0.00 42.29 3.32
157 158 6.015180 ACATTTCTATGTTTGATGCCAACACT 60.015 34.615 0.00 0.00 42.29 3.55
158 159 5.627499 TTCTATGTTTGATGCCAACACTC 57.373 39.130 0.00 0.00 30.88 3.51
159 160 4.009675 TCTATGTTTGATGCCAACACTCC 58.990 43.478 0.00 0.00 30.88 3.85
160 161 2.363306 TGTTTGATGCCAACACTCCT 57.637 45.000 0.00 0.00 30.88 3.69
161 162 2.229792 TGTTTGATGCCAACACTCCTC 58.770 47.619 0.00 0.00 30.88 3.71
162 163 2.229792 GTTTGATGCCAACACTCCTCA 58.770 47.619 0.00 0.00 30.88 3.86
163 164 2.821969 GTTTGATGCCAACACTCCTCAT 59.178 45.455 0.00 0.00 30.88 2.90
164 165 2.408271 TGATGCCAACACTCCTCATC 57.592 50.000 0.00 0.00 35.40 2.92
165 166 1.911357 TGATGCCAACACTCCTCATCT 59.089 47.619 0.00 0.00 35.74 2.90
166 167 2.306805 TGATGCCAACACTCCTCATCTT 59.693 45.455 0.00 0.00 35.74 2.40
167 168 2.479566 TGCCAACACTCCTCATCTTC 57.520 50.000 0.00 0.00 0.00 2.87
168 169 1.003580 TGCCAACACTCCTCATCTTCC 59.996 52.381 0.00 0.00 0.00 3.46
169 170 1.280421 GCCAACACTCCTCATCTTCCT 59.720 52.381 0.00 0.00 0.00 3.36
170 171 2.290577 GCCAACACTCCTCATCTTCCTT 60.291 50.000 0.00 0.00 0.00 3.36
171 172 3.604582 CCAACACTCCTCATCTTCCTTC 58.395 50.000 0.00 0.00 0.00 3.46
172 173 3.257393 CAACACTCCTCATCTTCCTTCG 58.743 50.000 0.00 0.00 0.00 3.79
173 174 1.827969 ACACTCCTCATCTTCCTTCGG 59.172 52.381 0.00 0.00 0.00 4.30
174 175 0.827368 ACTCCTCATCTTCCTTCGGC 59.173 55.000 0.00 0.00 0.00 5.54
175 176 0.826715 CTCCTCATCTTCCTTCGGCA 59.173 55.000 0.00 0.00 0.00 5.69
176 177 1.415659 CTCCTCATCTTCCTTCGGCAT 59.584 52.381 0.00 0.00 0.00 4.40
177 178 1.839994 TCCTCATCTTCCTTCGGCATT 59.160 47.619 0.00 0.00 0.00 3.56
178 179 1.945394 CCTCATCTTCCTTCGGCATTG 59.055 52.381 0.00 0.00 0.00 2.82
179 180 1.332997 CTCATCTTCCTTCGGCATTGC 59.667 52.381 0.00 0.00 0.00 3.56
180 181 1.065199 TCATCTTCCTTCGGCATTGCT 60.065 47.619 8.82 0.00 0.00 3.91
181 182 2.170397 TCATCTTCCTTCGGCATTGCTA 59.830 45.455 8.82 0.00 0.00 3.49
182 183 2.024176 TCTTCCTTCGGCATTGCTAC 57.976 50.000 8.82 0.00 0.00 3.58
183 184 1.277842 TCTTCCTTCGGCATTGCTACA 59.722 47.619 8.82 0.00 0.00 2.74
184 185 2.083774 CTTCCTTCGGCATTGCTACAA 58.916 47.619 8.82 0.00 0.00 2.41
185 186 1.448985 TCCTTCGGCATTGCTACAAC 58.551 50.000 8.82 0.00 0.00 3.32
186 187 1.164411 CCTTCGGCATTGCTACAACA 58.836 50.000 8.82 0.00 0.00 3.33
187 188 1.131126 CCTTCGGCATTGCTACAACAG 59.869 52.381 8.82 0.00 0.00 3.16
199 200 4.503741 GCTACAACAGCCATTGAAGAAA 57.496 40.909 4.63 0.00 45.23 2.52
200 201 4.870363 GCTACAACAGCCATTGAAGAAAA 58.130 39.130 4.63 0.00 45.23 2.29
201 202 4.919754 GCTACAACAGCCATTGAAGAAAAG 59.080 41.667 4.63 0.00 45.23 2.27
202 203 5.278463 GCTACAACAGCCATTGAAGAAAAGA 60.278 40.000 4.63 0.00 45.23 2.52
203 204 5.596836 ACAACAGCCATTGAAGAAAAGAA 57.403 34.783 4.63 0.00 33.57 2.52
204 205 5.351458 ACAACAGCCATTGAAGAAAAGAAC 58.649 37.500 4.63 0.00 33.57 3.01
205 206 4.228912 ACAGCCATTGAAGAAAAGAACG 57.771 40.909 0.00 0.00 0.00 3.95
206 207 3.882888 ACAGCCATTGAAGAAAAGAACGA 59.117 39.130 0.00 0.00 0.00 3.85
207 208 4.222114 CAGCCATTGAAGAAAAGAACGAC 58.778 43.478 0.00 0.00 0.00 4.34
208 209 3.058914 AGCCATTGAAGAAAAGAACGACG 60.059 43.478 0.00 0.00 0.00 5.12
209 210 3.059188 GCCATTGAAGAAAAGAACGACGA 60.059 43.478 0.00 0.00 0.00 4.20
210 211 4.378459 GCCATTGAAGAAAAGAACGACGAT 60.378 41.667 0.00 0.00 0.00 3.73
211 212 5.316770 CCATTGAAGAAAAGAACGACGATC 58.683 41.667 0.00 0.00 0.00 3.69
212 213 5.107104 CCATTGAAGAAAAGAACGACGATCA 60.107 40.000 0.00 0.00 0.00 2.92
213 214 6.402550 CCATTGAAGAAAAGAACGACGATCAT 60.403 38.462 0.00 0.00 0.00 2.45
214 215 5.763444 TGAAGAAAAGAACGACGATCATC 57.237 39.130 0.00 0.00 0.00 2.92
215 216 5.470368 TGAAGAAAAGAACGACGATCATCT 58.530 37.500 0.00 2.16 0.00 2.90
216 217 5.573282 TGAAGAAAAGAACGACGATCATCTC 59.427 40.000 0.00 0.00 0.00 2.75
217 218 4.425520 AGAAAAGAACGACGATCATCTCC 58.574 43.478 0.00 0.00 0.00 3.71
218 219 4.158764 AGAAAAGAACGACGATCATCTCCT 59.841 41.667 0.00 0.00 0.00 3.69
219 220 3.701532 AAGAACGACGATCATCTCCTC 57.298 47.619 0.00 0.00 0.00 3.71
220 221 1.600013 AGAACGACGATCATCTCCTCG 59.400 52.381 0.00 0.00 38.08 4.63
221 222 0.029567 AACGACGATCATCTCCTCGC 59.970 55.000 0.00 0.00 36.31 5.03
222 223 1.081774 CGACGATCATCTCCTCGCC 60.082 63.158 0.00 0.00 38.42 5.54
223 224 1.081774 GACGATCATCTCCTCGCCG 60.082 63.158 0.00 0.00 38.42 6.46
224 225 2.256764 CGATCATCTCCTCGCCGG 59.743 66.667 0.00 0.00 0.00 6.13
225 226 2.261586 CGATCATCTCCTCGCCGGA 61.262 63.158 5.05 0.00 40.30 5.14
244 245 4.067016 CGCGCGTGTGGTACCAAC 62.067 66.667 24.19 15.53 0.00 3.77
245 246 3.719144 GCGCGTGTGGTACCAACC 61.719 66.667 18.31 9.13 46.98 3.77
274 275 9.869844 AGTTATTTAGTTATAGTGTAGCGTACG 57.130 33.333 11.84 11.84 0.00 3.67
275 276 9.651718 GTTATTTAGTTATAGTGTAGCGTACGT 57.348 33.333 17.90 6.37 0.00 3.57
278 279 8.964420 TTTAGTTATAGTGTAGCGTACGTTTT 57.036 30.769 17.90 5.75 0.00 2.43
279 280 6.859715 AGTTATAGTGTAGCGTACGTTTTG 57.140 37.500 17.90 0.00 0.00 2.44
280 281 5.287035 AGTTATAGTGTAGCGTACGTTTTGC 59.713 40.000 17.90 7.34 0.00 3.68
281 282 1.855513 AGTGTAGCGTACGTTTTGCA 58.144 45.000 17.90 9.82 0.00 4.08
282 283 2.203401 AGTGTAGCGTACGTTTTGCAA 58.797 42.857 17.90 0.00 0.00 4.08
283 284 2.803956 AGTGTAGCGTACGTTTTGCAAT 59.196 40.909 17.90 9.12 0.00 3.56
284 285 3.989167 AGTGTAGCGTACGTTTTGCAATA 59.011 39.130 17.90 0.00 0.00 1.90
285 286 4.076985 GTGTAGCGTACGTTTTGCAATAC 58.923 43.478 17.90 9.71 0.00 1.89
286 287 3.989167 TGTAGCGTACGTTTTGCAATACT 59.011 39.130 17.90 3.62 0.00 2.12
287 288 5.060816 GTGTAGCGTACGTTTTGCAATACTA 59.939 40.000 17.90 2.62 0.00 1.82
288 289 4.572950 AGCGTACGTTTTGCAATACTAC 57.427 40.909 17.90 14.98 0.00 2.73
289 290 3.989167 AGCGTACGTTTTGCAATACTACA 59.011 39.130 17.90 0.86 0.00 2.74
290 291 4.076985 GCGTACGTTTTGCAATACTACAC 58.923 43.478 17.90 10.50 0.00 2.90
295 296 7.201376 CGTACGTTTTGCAATACTACACTGTAT 60.201 37.037 16.42 0.00 34.91 2.29
315 320 1.570979 TGAGAGGAGGCATAGTGAGGA 59.429 52.381 0.00 0.00 0.00 3.71
376 381 2.282110 CACCCGCATGTGAACCCA 60.282 61.111 8.11 0.00 38.55 4.51
391 396 4.776322 CCAATCGGCCGGCAGTCA 62.776 66.667 30.85 10.00 0.00 3.41
392 397 3.499737 CAATCGGCCGGCAGTCAC 61.500 66.667 30.85 9.46 0.00 3.67
439 461 0.742505 ACCATCTGCATGCAATTCCG 59.257 50.000 22.88 9.79 0.00 4.30
440 462 0.596600 CCATCTGCATGCAATTCCGC 60.597 55.000 22.88 0.00 0.00 5.54
442 464 4.395080 CTGCATGCAATTCCGCAG 57.605 55.556 22.88 3.14 46.99 5.18
443 465 1.876714 CTGCATGCAATTCCGCAGC 60.877 57.895 22.88 2.12 46.99 5.25
444 466 2.584143 GCATGCAATTCCGCAGCC 60.584 61.111 14.21 0.00 46.99 4.85
445 467 2.886610 CATGCAATTCCGCAGCCA 59.113 55.556 0.00 0.00 46.99 4.75
446 468 1.215912 CATGCAATTCCGCAGCCAA 59.784 52.632 0.00 0.00 46.99 4.52
447 469 0.179094 CATGCAATTCCGCAGCCAAT 60.179 50.000 0.00 0.00 46.99 3.16
448 470 0.103572 ATGCAATTCCGCAGCCAATC 59.896 50.000 0.00 0.00 46.99 2.67
449 471 1.227060 GCAATTCCGCAGCCAATCC 60.227 57.895 0.00 0.00 0.00 3.01
450 472 1.947597 GCAATTCCGCAGCCAATCCA 61.948 55.000 0.00 0.00 0.00 3.41
451 473 0.179129 CAATTCCGCAGCCAATCCAC 60.179 55.000 0.00 0.00 0.00 4.02
452 474 1.322538 AATTCCGCAGCCAATCCACC 61.323 55.000 0.00 0.00 0.00 4.61
453 475 3.936772 TTCCGCAGCCAATCCACCC 62.937 63.158 0.00 0.00 0.00 4.61
454 476 4.738998 CCGCAGCCAATCCACCCA 62.739 66.667 0.00 0.00 0.00 4.51
455 477 2.440796 CGCAGCCAATCCACCCAT 60.441 61.111 0.00 0.00 0.00 4.00
456 478 1.152984 CGCAGCCAATCCACCCATA 60.153 57.895 0.00 0.00 0.00 2.74
462 484 1.412937 GCCAATCCACCCATAACCCAT 60.413 52.381 0.00 0.00 0.00 4.00
467 489 1.780309 TCCACCCATAACCCATCCATC 59.220 52.381 0.00 0.00 0.00 3.51
470 492 2.065799 ACCCATAACCCATCCATCTCC 58.934 52.381 0.00 0.00 0.00 3.71
515 544 0.322648 ACCCGGCTATAAATACGGCC 59.677 55.000 0.00 0.00 44.70 6.13
516 545 0.392060 CCCGGCTATAAATACGGCCC 60.392 60.000 0.00 0.00 44.70 5.80
518 547 0.037975 CGGCTATAAATACGGCCCGT 60.038 55.000 15.63 15.63 44.35 5.28
547 576 1.078848 GACCGGCAGAACAGAGCAT 60.079 57.895 0.00 0.00 0.00 3.79
563 592 5.531659 ACAGAGCATCCAATTCAATCATCTC 59.468 40.000 0.00 0.00 33.66 2.75
585 619 2.656560 ACTGGAGTAACTTGCTAGCG 57.343 50.000 10.77 0.00 0.00 4.26
700 747 0.949105 CAACAGCGGCGGTAAGAAGT 60.949 55.000 12.74 1.48 0.00 3.01
1094 1259 8.567285 ACGAAATTCTCTCTTTGGAATTACAT 57.433 30.769 0.00 0.00 40.06 2.29
1115 1280 4.380841 TCCATTTACTACTAGCCACACG 57.619 45.455 0.00 0.00 0.00 4.49
1117 1282 4.221262 TCCATTTACTACTAGCCACACGTT 59.779 41.667 0.00 0.00 0.00 3.99
1128 1293 7.630242 ACTAGCCACACGTTACTAATTAGTA 57.370 36.000 19.30 19.30 37.73 1.82
1133 1298 8.469200 AGCCACACGTTACTAATTAGTAATACA 58.531 33.333 30.96 13.96 46.73 2.29
1351 1671 2.002586 CAGTTCAGGAGGTACATTGCG 58.997 52.381 0.00 0.00 0.00 4.85
1377 1697 5.741510 GTCGCCATCATCTTATCTTATCTCG 59.258 44.000 0.00 0.00 0.00 4.04
1407 1735 0.460311 CTCCACTACCGACCATCCAC 59.540 60.000 0.00 0.00 0.00 4.02
1408 1736 1.141019 CCACTACCGACCATCCACG 59.859 63.158 0.00 0.00 0.00 4.94
1411 1739 1.318158 ACTACCGACCATCCACGACC 61.318 60.000 0.00 0.00 0.00 4.79
1501 1834 1.136110 CAAAAGCAAACGGAAGGTGGT 59.864 47.619 0.00 0.00 33.27 4.16
1502 1835 2.351706 AAAGCAAACGGAAGGTGGTA 57.648 45.000 0.00 0.00 31.92 3.25
1561 1906 0.378962 TTTTTGCCTTGTCGTCACCG 59.621 50.000 0.00 0.00 0.00 4.94
1603 1974 2.158430 ACAAGGATATGCATGCATGGGA 60.158 45.455 37.43 22.01 37.82 4.37
1725 2109 0.037232 GGTGTTCTTGGTCGCTAGCT 60.037 55.000 13.93 0.00 0.00 3.32
1726 2110 1.203994 GGTGTTCTTGGTCGCTAGCTA 59.796 52.381 13.93 0.00 0.00 3.32
1727 2111 2.531206 GTGTTCTTGGTCGCTAGCTAG 58.469 52.381 16.84 16.84 0.00 3.42
1728 2112 2.094649 GTGTTCTTGGTCGCTAGCTAGT 60.095 50.000 21.62 0.00 0.00 2.57
1756 2140 3.558829 GGTACATCGATCTCGTGACACTA 59.441 47.826 3.68 0.00 40.80 2.74
1759 2143 5.250235 ACATCGATCTCGTGACACTAAAT 57.750 39.130 3.68 0.00 40.80 1.40
1761 2145 6.792326 ACATCGATCTCGTGACACTAAATAA 58.208 36.000 3.68 0.00 40.80 1.40
1764 2148 6.792326 TCGATCTCGTGACACTAAATAACAT 58.208 36.000 3.68 0.00 40.80 2.71
1765 2149 7.922837 TCGATCTCGTGACACTAAATAACATA 58.077 34.615 3.68 0.00 40.80 2.29
1769 2153 6.750501 TCTCGTGACACTAAATAACATAGCAC 59.249 38.462 3.68 0.00 0.00 4.40
1775 2159 7.011389 TGACACTAAATAACATAGCACTGCATC 59.989 37.037 3.30 0.00 0.00 3.91
1776 2160 6.018751 ACACTAAATAACATAGCACTGCATCG 60.019 38.462 3.30 0.00 0.00 3.84
1777 2161 3.885484 AATAACATAGCACTGCATCGC 57.115 42.857 3.30 0.00 0.00 4.58
1778 2162 1.581934 TAACATAGCACTGCATCGCC 58.418 50.000 3.30 0.00 0.00 5.54
1780 2164 1.091771 ACATAGCACTGCATCGCCAC 61.092 55.000 3.30 0.00 0.00 5.01
1819 2207 5.237815 TGAATCGAGCTAGATTGTGTTTGT 58.762 37.500 24.47 0.05 40.58 2.83
1822 2210 4.627058 TCGAGCTAGATTGTGTTTGTGAA 58.373 39.130 0.00 0.00 0.00 3.18
1846 2251 2.430921 CCACTGACACGGTCGAGC 60.431 66.667 4.06 4.06 34.95 5.03
1853 2258 1.674611 GACACGGTCGAGCGACATTG 61.675 60.000 39.91 28.93 46.20 2.82
1854 2259 2.809601 ACGGTCGAGCGACATTGC 60.810 61.111 39.91 0.00 46.20 3.56
1962 2381 0.250858 TGGTGGAGTACGAGAACGGA 60.251 55.000 0.00 0.00 44.46 4.69
2223 2645 3.551863 GCTCCATCATCCAGTTCGACTAG 60.552 52.174 0.00 0.00 0.00 2.57
2224 2646 2.362397 TCCATCATCCAGTTCGACTAGC 59.638 50.000 0.00 0.00 0.00 3.42
2226 2648 1.112113 TCATCCAGTTCGACTAGCCC 58.888 55.000 0.00 0.00 0.00 5.19
2227 2649 0.824109 CATCCAGTTCGACTAGCCCA 59.176 55.000 0.00 0.00 0.00 5.36
2229 2651 1.112113 TCCAGTTCGACTAGCCCATC 58.888 55.000 0.00 0.00 0.00 3.51
2230 2652 0.824109 CCAGTTCGACTAGCCCATCA 59.176 55.000 0.00 0.00 0.00 3.07
2231 2653 1.207089 CCAGTTCGACTAGCCCATCAA 59.793 52.381 0.00 0.00 0.00 2.57
2233 2655 3.535561 CAGTTCGACTAGCCCATCAAAT 58.464 45.455 0.00 0.00 0.00 2.32
2234 2656 4.442893 CCAGTTCGACTAGCCCATCAAATA 60.443 45.833 0.00 0.00 0.00 1.40
2235 2657 5.300752 CAGTTCGACTAGCCCATCAAATAT 58.699 41.667 0.00 0.00 0.00 1.28
2236 2658 5.760253 CAGTTCGACTAGCCCATCAAATATT 59.240 40.000 0.00 0.00 0.00 1.28
2237 2659 5.760253 AGTTCGACTAGCCCATCAAATATTG 59.240 40.000 0.00 0.00 0.00 1.90
2238 2660 5.545063 TCGACTAGCCCATCAAATATTGA 57.455 39.130 0.00 0.00 45.01 2.57
2300 2723 9.720667 TTGAAAAATATATATATGCGATGCTGC 57.279 29.630 6.00 0.00 0.00 5.25
2323 2746 3.975083 TACGTGCATCCGTGGCGTC 62.975 63.158 12.17 0.00 41.92 5.19
2337 2760 4.710695 CGTCGTGGGTGCGCACTA 62.711 66.667 36.84 24.43 0.00 2.74
2338 2761 3.110178 GTCGTGGGTGCGCACTAC 61.110 66.667 36.84 31.24 0.00 2.73
2339 2762 3.607661 TCGTGGGTGCGCACTACA 61.608 61.111 36.84 31.09 0.00 2.74
2340 2763 2.434185 CGTGGGTGCGCACTACAT 60.434 61.111 36.84 0.00 0.00 2.29
2341 2764 1.153726 CGTGGGTGCGCACTACATA 60.154 57.895 36.84 17.56 0.00 2.29
2342 2765 0.529773 CGTGGGTGCGCACTACATAT 60.530 55.000 36.84 0.00 0.00 1.78
2343 2766 1.269361 CGTGGGTGCGCACTACATATA 60.269 52.381 36.84 13.71 0.00 0.86
2344 2767 2.609491 CGTGGGTGCGCACTACATATAT 60.609 50.000 36.84 0.00 0.00 0.86
2345 2768 3.399330 GTGGGTGCGCACTACATATATT 58.601 45.455 36.84 0.00 0.00 1.28
2346 2769 4.562082 GTGGGTGCGCACTACATATATTA 58.438 43.478 36.84 12.05 0.00 0.98
2347 2770 5.175859 GTGGGTGCGCACTACATATATTAT 58.824 41.667 36.84 0.00 0.00 1.28
2348 2771 6.334989 GTGGGTGCGCACTACATATATTATA 58.665 40.000 36.84 10.74 0.00 0.98
2349 2772 6.984474 GTGGGTGCGCACTACATATATTATAT 59.016 38.462 36.84 0.00 0.00 0.86
2350 2773 8.139350 GTGGGTGCGCACTACATATATTATATA 58.861 37.037 36.84 9.62 0.00 0.86
2351 2774 8.866093 TGGGTGCGCACTACATATATTATATAT 58.134 33.333 36.84 0.00 0.00 0.86
2381 2804 0.532862 AACTAATGGATGGCCGCTCG 60.533 55.000 0.00 0.00 36.79 5.03
2382 2805 1.367471 CTAATGGATGGCCGCTCGA 59.633 57.895 0.00 0.00 36.79 4.04
2384 2807 0.037326 TAATGGATGGCCGCTCGATC 60.037 55.000 0.00 0.00 36.79 3.69
2385 2808 1.762522 AATGGATGGCCGCTCGATCT 61.763 55.000 0.00 0.00 36.79 2.75
2386 2809 2.356793 GGATGGCCGCTCGATCTG 60.357 66.667 0.00 0.00 31.48 2.90
2398 2821 2.957871 CGATCTGCGAATCGGTTGA 58.042 52.632 4.35 0.00 43.70 3.18
2401 2824 2.285220 CGATCTGCGAATCGGTTGATTT 59.715 45.455 4.35 0.00 44.79 2.17
2402 2825 3.242413 CGATCTGCGAATCGGTTGATTTT 60.242 43.478 4.35 0.00 44.79 1.82
2403 2826 4.026062 CGATCTGCGAATCGGTTGATTTTA 60.026 41.667 4.35 0.00 44.79 1.52
2406 2829 6.189677 TCTGCGAATCGGTTGATTTTAATT 57.810 33.333 4.35 0.00 44.79 1.40
2407 2830 7.310072 TCTGCGAATCGGTTGATTTTAATTA 57.690 32.000 4.35 0.00 44.79 1.40
2408 2831 7.406553 TCTGCGAATCGGTTGATTTTAATTAG 58.593 34.615 4.35 0.00 44.79 1.73
2466 2889 1.904865 TCCGGTGCCTAGTGTCGTT 60.905 57.895 0.00 0.00 0.00 3.85
2481 2904 1.068055 GTCGTTGTCCATCGTGTACCT 60.068 52.381 0.00 0.00 0.00 3.08
2503 2932 5.508825 CCTCAGTCTGTGCTTAGCCTTATAG 60.509 48.000 0.29 0.00 0.00 1.31
2532 2961 5.036737 GCATGTATCACTTAATGTTGGCAC 58.963 41.667 0.00 0.00 0.00 5.01
2545 2974 2.158534 TGTTGGCACCTACTCCAATTGT 60.159 45.455 4.43 0.00 43.43 2.71
2556 2985 0.034574 TCCAATTGTCCATCCACCGG 60.035 55.000 0.00 0.00 0.00 5.28
2557 2986 1.666209 CCAATTGTCCATCCACCGGC 61.666 60.000 0.00 0.00 0.00 6.13
2558 2987 0.964860 CAATTGTCCATCCACCGGCA 60.965 55.000 0.00 0.00 0.00 5.69
2559 2988 0.965363 AATTGTCCATCCACCGGCAC 60.965 55.000 0.00 0.00 0.00 5.01
2560 2989 2.837031 ATTGTCCATCCACCGGCACC 62.837 60.000 0.00 0.00 0.00 5.01
2567 2996 3.849951 CCACCGGCACCGCTCTAT 61.850 66.667 0.00 0.00 38.24 1.98
2568 2997 2.495409 CCACCGGCACCGCTCTATA 61.495 63.158 0.00 0.00 38.24 1.31
2574 3003 2.223595 CCGGCACCGCTCTATATATCTG 60.224 54.545 2.83 0.00 38.24 2.90
2610 3039 5.879223 AGCTTTTCTACATTGATCTCCTGTG 59.121 40.000 0.00 0.00 0.00 3.66
2617 3046 3.054582 ACATTGATCTCCTGTGCATCTGT 60.055 43.478 0.00 0.00 0.00 3.41
2631 3060 3.519107 TGCATCTGTCATCCTTGTTCCTA 59.481 43.478 0.00 0.00 0.00 2.94
2632 3061 3.873952 GCATCTGTCATCCTTGTTCCTAC 59.126 47.826 0.00 0.00 0.00 3.18
2643 3072 0.895100 TGTTCCTACACGTACGGCCT 60.895 55.000 21.06 3.49 0.00 5.19
2646 3075 1.153901 CCTACACGTACGGCCTGTG 60.154 63.158 21.06 10.70 39.47 3.66
2648 3077 0.454600 CTACACGTACGGCCTGTGAT 59.545 55.000 21.06 2.31 37.08 3.06
2649 3078 0.452987 TACACGTACGGCCTGTGATC 59.547 55.000 21.06 0.00 37.08 2.92
2651 3080 0.389296 CACGTACGGCCTGTGATCAA 60.389 55.000 21.06 0.00 35.66 2.57
2653 3082 1.066430 ACGTACGGCCTGTGATCAAAT 60.066 47.619 21.06 0.00 0.00 2.32
2654 3083 1.593006 CGTACGGCCTGTGATCAAATC 59.407 52.381 7.57 0.00 0.00 2.17
2659 3493 2.230992 CGGCCTGTGATCAAATCCAAAA 59.769 45.455 0.00 0.00 0.00 2.44
2667 3501 7.255730 CCTGTGATCAAATCCAAAAAGACTCTT 60.256 37.037 0.00 0.00 0.00 2.85
2674 3508 4.788925 TCCAAAAAGACTCTTCCCTTCA 57.211 40.909 0.00 0.00 0.00 3.02
2675 3509 5.324832 TCCAAAAAGACTCTTCCCTTCAT 57.675 39.130 0.00 0.00 0.00 2.57
2687 3521 6.445139 ACTCTTCCCTTCATTCTCTTGGATAA 59.555 38.462 0.00 0.00 0.00 1.75
2689 3523 7.112779 TCTTCCCTTCATTCTCTTGGATAAAC 58.887 38.462 0.00 0.00 0.00 2.01
2691 3525 7.749377 TCCCTTCATTCTCTTGGATAAACTA 57.251 36.000 0.00 0.00 0.00 2.24
2692 3526 7.565680 TCCCTTCATTCTCTTGGATAAACTAC 58.434 38.462 0.00 0.00 0.00 2.73
2693 3527 7.182026 TCCCTTCATTCTCTTGGATAAACTACA 59.818 37.037 0.00 0.00 0.00 2.74
2694 3528 7.995488 CCCTTCATTCTCTTGGATAAACTACAT 59.005 37.037 0.00 0.00 0.00 2.29
2707 3541 6.377712 GGATAAACTACATATAGAGAGCGGGT 59.622 42.308 0.00 0.00 32.23 5.28
2708 3542 7.555554 GGATAAACTACATATAGAGAGCGGGTA 59.444 40.741 0.00 0.00 32.23 3.69
2710 3544 5.758790 ACTACATATAGAGAGCGGGTAGA 57.241 43.478 0.00 0.00 33.02 2.59
2711 3545 6.316280 ACTACATATAGAGAGCGGGTAGAT 57.684 41.667 0.00 0.00 33.02 1.98
2712 3546 6.723339 ACTACATATAGAGAGCGGGTAGATT 58.277 40.000 0.00 0.00 33.02 2.40
2737 3575 3.073798 TGCCTTTGATGTCCCTTTCAGTA 59.926 43.478 0.00 0.00 0.00 2.74
2743 3581 6.877611 TTGATGTCCCTTTCAGTAAAGAAC 57.122 37.500 0.00 0.00 44.14 3.01
2769 3621 2.547211 GCTGTCTATACATGGCTTGCTG 59.453 50.000 0.00 0.00 34.37 4.41
2772 3624 3.709141 TGTCTATACATGGCTTGCTGGTA 59.291 43.478 0.00 0.00 0.00 3.25
2782 3634 3.376859 TGGCTTGCTGGTAAATCAATACG 59.623 43.478 0.00 0.00 0.00 3.06
2820 3687 1.005215 CTTTGGATGTCCTTCCTGGCT 59.995 52.381 0.09 0.00 36.68 4.75
2824 3691 1.229951 ATGTCCTTCCTGGCTGGGA 60.230 57.895 10.79 0.00 36.20 4.37
2841 3708 1.395826 GGACCGGGAGATGGAGACTG 61.396 65.000 6.32 0.00 0.00 3.51
2846 3713 1.039856 GGGAGATGGAGACTGAGCTC 58.960 60.000 6.82 6.82 0.00 4.09
2873 3740 0.102481 ATGCATGCAAGCTAAGCTGC 59.898 50.000 26.68 19.19 39.62 5.25
3035 3915 1.507562 CGACGCCAATACATGCCATA 58.492 50.000 0.00 0.00 0.00 2.74
3127 4014 2.109425 ACGTGGAAGCTAATCAACCC 57.891 50.000 0.00 0.00 0.00 4.11
3134 4021 3.879892 GGAAGCTAATCAACCCTGTCATC 59.120 47.826 0.00 0.00 0.00 2.92
3147 4034 0.478072 TGTCATCCCCTTGCTTGTGT 59.522 50.000 0.00 0.00 0.00 3.72
3159 4047 5.281727 CCTTGCTTGTGTTTCTAGAAAACC 58.718 41.667 19.30 12.80 31.33 3.27
3170 4058 2.003301 CTAGAAAACCGGCTTCTCTGC 58.997 52.381 19.76 0.00 34.90 4.26
3179 4067 0.897401 GGCTTCTCTGCCCTGCTTTT 60.897 55.000 0.00 0.00 46.82 2.27
3184 4072 3.059352 TCTCTGCCCTGCTTTTTAGAC 57.941 47.619 0.00 0.00 0.00 2.59
3187 4075 2.106511 TCTGCCCTGCTTTTTAGACAGT 59.893 45.455 0.00 0.00 0.00 3.55
3189 4077 2.884639 TGCCCTGCTTTTTAGACAGTTC 59.115 45.455 0.00 0.00 0.00 3.01
3190 4078 2.229062 GCCCTGCTTTTTAGACAGTTCC 59.771 50.000 0.00 0.00 0.00 3.62
3195 4083 6.406961 CCCTGCTTTTTAGACAGTTCCTTTTT 60.407 38.462 0.00 0.00 0.00 1.94
3199 4088 8.524487 TGCTTTTTAGACAGTTCCTTTTTAACA 58.476 29.630 0.00 0.00 0.00 2.41
3200 4089 9.020813 GCTTTTTAGACAGTTCCTTTTTAACAG 57.979 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.201240 CGTGTATATTCATGCAGACGTATGTAC 60.201 40.741 12.41 4.43 36.67 2.90
1 2 6.799925 CGTGTATATTCATGCAGACGTATGTA 59.200 38.462 12.41 7.88 36.67 2.29
2 3 5.629435 CGTGTATATTCATGCAGACGTATGT 59.371 40.000 12.41 0.00 36.67 2.29
3 4 5.443301 GCGTGTATATTCATGCAGACGTATG 60.443 44.000 18.52 5.65 46.02 2.39
4 5 4.621460 GCGTGTATATTCATGCAGACGTAT 59.379 41.667 18.52 0.00 46.02 3.06
5 6 3.978855 GCGTGTATATTCATGCAGACGTA 59.021 43.478 18.52 0.00 46.02 3.57
6 7 2.794910 GCGTGTATATTCATGCAGACGT 59.205 45.455 18.52 0.00 46.02 4.34
7 8 2.160104 CGCGTGTATATTCATGCAGACG 60.160 50.000 21.80 6.76 46.78 4.18
8 9 2.410262 GCGCGTGTATATTCATGCAGAC 60.410 50.000 21.80 10.13 46.78 3.51
9 10 1.792367 GCGCGTGTATATTCATGCAGA 59.208 47.619 21.80 0.00 46.78 4.26
10 11 1.460751 CGCGCGTGTATATTCATGCAG 60.461 52.381 24.19 16.14 46.78 4.41
11 12 0.506506 CGCGCGTGTATATTCATGCA 59.493 50.000 24.19 0.00 46.78 3.96
12 13 0.506932 ACGCGCGTGTATATTCATGC 59.493 50.000 37.37 14.66 44.10 4.06
13 14 2.196817 CACGCGCGTGTATATTCATG 57.803 50.000 45.19 22.96 40.91 3.07
23 24 2.797866 AAGAGACTACCACGCGCGTG 62.798 60.000 46.27 46.27 45.02 5.34
24 25 2.138656 AAAGAGACTACCACGCGCGT 62.139 55.000 32.73 32.73 0.00 6.01
25 26 1.007336 AAAAGAGACTACCACGCGCG 61.007 55.000 30.96 30.96 0.00 6.86
26 27 0.438830 CAAAAGAGACTACCACGCGC 59.561 55.000 5.73 0.00 0.00 6.86
27 28 0.438830 GCAAAAGAGACTACCACGCG 59.561 55.000 3.53 3.53 0.00 6.01
28 29 1.508632 TGCAAAAGAGACTACCACGC 58.491 50.000 0.00 0.00 0.00 5.34
29 30 2.416547 CCATGCAAAAGAGACTACCACG 59.583 50.000 0.00 0.00 0.00 4.94
30 31 3.412386 ACCATGCAAAAGAGACTACCAC 58.588 45.455 0.00 0.00 0.00 4.16
31 32 3.788227 ACCATGCAAAAGAGACTACCA 57.212 42.857 0.00 0.00 0.00 3.25
32 33 6.016610 TGTTTTACCATGCAAAAGAGACTACC 60.017 38.462 0.00 0.00 0.00 3.18
33 34 6.966021 TGTTTTACCATGCAAAAGAGACTAC 58.034 36.000 0.00 0.00 0.00 2.73
34 35 7.230510 ACATGTTTTACCATGCAAAAGAGACTA 59.769 33.333 0.00 0.00 44.88 2.59
35 36 6.040842 ACATGTTTTACCATGCAAAAGAGACT 59.959 34.615 0.00 0.00 44.88 3.24
36 37 6.215845 ACATGTTTTACCATGCAAAAGAGAC 58.784 36.000 0.00 0.00 44.88 3.36
37 38 6.265196 AGACATGTTTTACCATGCAAAAGAGA 59.735 34.615 0.00 0.00 44.88 3.10
38 39 6.449698 AGACATGTTTTACCATGCAAAAGAG 58.550 36.000 0.00 1.78 44.88 2.85
39 40 6.040278 TGAGACATGTTTTACCATGCAAAAGA 59.960 34.615 0.00 4.12 44.88 2.52
40 41 6.215121 TGAGACATGTTTTACCATGCAAAAG 58.785 36.000 0.00 0.00 44.88 2.27
41 42 6.154203 TGAGACATGTTTTACCATGCAAAA 57.846 33.333 0.00 0.00 44.88 2.44
42 43 5.781210 TGAGACATGTTTTACCATGCAAA 57.219 34.783 0.00 0.00 44.88 3.68
43 44 5.105797 GGATGAGACATGTTTTACCATGCAA 60.106 40.000 0.00 0.00 44.88 4.08
44 45 4.398988 GGATGAGACATGTTTTACCATGCA 59.601 41.667 0.00 0.00 44.88 3.96
45 46 4.398988 TGGATGAGACATGTTTTACCATGC 59.601 41.667 0.00 5.75 44.88 4.06
46 47 6.704289 ATGGATGAGACATGTTTTACCATG 57.296 37.500 17.90 0.00 46.14 3.66
47 48 8.443176 AGATATGGATGAGACATGTTTTACCAT 58.557 33.333 20.46 20.46 38.76 3.55
48 49 7.805163 AGATATGGATGAGACATGTTTTACCA 58.195 34.615 0.00 7.43 0.00 3.25
49 50 9.778741 TTAGATATGGATGAGACATGTTTTACC 57.221 33.333 0.00 1.59 0.00 2.85
54 55 9.941325 GATCTTTAGATATGGATGAGACATGTT 57.059 33.333 0.00 0.00 34.37 2.71
55 56 9.097946 TGATCTTTAGATATGGATGAGACATGT 57.902 33.333 0.00 0.00 34.37 3.21
56 57 9.939802 TTGATCTTTAGATATGGATGAGACATG 57.060 33.333 0.00 0.00 34.37 3.21
79 80 9.932207 TCGATCCTTACTTAACTTGTATTTTGA 57.068 29.630 0.00 0.00 0.00 2.69
80 81 9.968743 GTCGATCCTTACTTAACTTGTATTTTG 57.031 33.333 0.00 0.00 0.00 2.44
81 82 9.715121 TGTCGATCCTTACTTAACTTGTATTTT 57.285 29.630 0.00 0.00 0.00 1.82
82 83 9.886132 ATGTCGATCCTTACTTAACTTGTATTT 57.114 29.630 0.00 0.00 0.00 1.40
83 84 9.314321 CATGTCGATCCTTACTTAACTTGTATT 57.686 33.333 0.00 0.00 0.00 1.89
84 85 8.692710 TCATGTCGATCCTTACTTAACTTGTAT 58.307 33.333 0.00 0.00 0.00 2.29
85 86 7.972277 GTCATGTCGATCCTTACTTAACTTGTA 59.028 37.037 0.00 0.00 0.00 2.41
86 87 6.812160 GTCATGTCGATCCTTACTTAACTTGT 59.188 38.462 0.00 0.00 0.00 3.16
87 88 6.811665 TGTCATGTCGATCCTTACTTAACTTG 59.188 38.462 0.00 0.00 0.00 3.16
88 89 6.931838 TGTCATGTCGATCCTTACTTAACTT 58.068 36.000 0.00 0.00 0.00 2.66
89 90 6.525578 TGTCATGTCGATCCTTACTTAACT 57.474 37.500 0.00 0.00 0.00 2.24
90 91 7.591006 TTTGTCATGTCGATCCTTACTTAAC 57.409 36.000 0.00 0.00 0.00 2.01
91 92 8.786826 ATTTTGTCATGTCGATCCTTACTTAA 57.213 30.769 0.00 0.00 0.00 1.85
92 93 8.786826 AATTTTGTCATGTCGATCCTTACTTA 57.213 30.769 0.00 0.00 0.00 2.24
93 94 7.687941 AATTTTGTCATGTCGATCCTTACTT 57.312 32.000 0.00 0.00 0.00 2.24
94 95 8.786826 TTAATTTTGTCATGTCGATCCTTACT 57.213 30.769 0.00 0.00 0.00 2.24
95 96 9.834628 TTTTAATTTTGTCATGTCGATCCTTAC 57.165 29.630 0.00 0.00 0.00 2.34
97 98 9.410556 CTTTTTAATTTTGTCATGTCGATCCTT 57.589 29.630 0.00 0.00 0.00 3.36
98 99 8.792633 TCTTTTTAATTTTGTCATGTCGATCCT 58.207 29.630 0.00 0.00 0.00 3.24
99 100 8.964420 TCTTTTTAATTTTGTCATGTCGATCC 57.036 30.769 0.00 0.00 0.00 3.36
133 134 6.392354 AGTGTTGGCATCAAACATAGAAATG 58.608 36.000 0.00 0.00 39.17 2.32
134 135 6.350445 GGAGTGTTGGCATCAAACATAGAAAT 60.350 38.462 0.00 0.00 34.28 2.17
135 136 5.048083 GGAGTGTTGGCATCAAACATAGAAA 60.048 40.000 0.00 0.00 34.28 2.52
136 137 4.458989 GGAGTGTTGGCATCAAACATAGAA 59.541 41.667 0.00 0.00 34.28 2.10
137 138 4.009675 GGAGTGTTGGCATCAAACATAGA 58.990 43.478 0.00 0.00 34.28 1.98
138 139 4.012374 AGGAGTGTTGGCATCAAACATAG 58.988 43.478 0.00 0.00 34.28 2.23
139 140 4.009675 GAGGAGTGTTGGCATCAAACATA 58.990 43.478 0.00 0.00 34.28 2.29
140 141 2.821969 GAGGAGTGTTGGCATCAAACAT 59.178 45.455 0.00 0.00 34.28 2.71
141 142 2.229792 GAGGAGTGTTGGCATCAAACA 58.770 47.619 0.00 0.00 34.28 2.83
142 143 2.229792 TGAGGAGTGTTGGCATCAAAC 58.770 47.619 0.00 0.00 34.28 2.93
143 144 2.655090 TGAGGAGTGTTGGCATCAAA 57.345 45.000 0.00 0.00 34.28 2.69
144 145 2.306805 AGATGAGGAGTGTTGGCATCAA 59.693 45.455 0.00 0.00 38.19 2.57
145 146 1.911357 AGATGAGGAGTGTTGGCATCA 59.089 47.619 0.00 0.00 38.19 3.07
146 147 2.706339 AGATGAGGAGTGTTGGCATC 57.294 50.000 0.00 0.00 36.49 3.91
147 148 2.356535 GGAAGATGAGGAGTGTTGGCAT 60.357 50.000 0.00 0.00 0.00 4.40
148 149 1.003580 GGAAGATGAGGAGTGTTGGCA 59.996 52.381 0.00 0.00 0.00 4.92
149 150 1.280421 AGGAAGATGAGGAGTGTTGGC 59.720 52.381 0.00 0.00 0.00 4.52
150 151 3.604582 GAAGGAAGATGAGGAGTGTTGG 58.395 50.000 0.00 0.00 0.00 3.77
151 152 3.257393 CGAAGGAAGATGAGGAGTGTTG 58.743 50.000 0.00 0.00 0.00 3.33
152 153 3.601443 CGAAGGAAGATGAGGAGTGTT 57.399 47.619 0.00 0.00 0.00 3.32
168 169 2.532531 CTGTTGTAGCAATGCCGAAG 57.467 50.000 0.00 0.00 0.00 3.79
179 180 6.317789 TCTTTTCTTCAATGGCTGTTGTAG 57.682 37.500 3.75 4.08 0.00 2.74
180 181 6.503524 GTTCTTTTCTTCAATGGCTGTTGTA 58.496 36.000 3.75 0.00 0.00 2.41
181 182 5.351458 GTTCTTTTCTTCAATGGCTGTTGT 58.649 37.500 3.75 0.00 0.00 3.32
182 183 4.442073 CGTTCTTTTCTTCAATGGCTGTTG 59.558 41.667 0.00 0.00 0.00 3.33
183 184 4.338118 TCGTTCTTTTCTTCAATGGCTGTT 59.662 37.500 0.00 0.00 0.00 3.16
184 185 3.882888 TCGTTCTTTTCTTCAATGGCTGT 59.117 39.130 0.00 0.00 0.00 4.40
185 186 4.222114 GTCGTTCTTTTCTTCAATGGCTG 58.778 43.478 0.00 0.00 0.00 4.85
186 187 3.058914 CGTCGTTCTTTTCTTCAATGGCT 60.059 43.478 0.00 0.00 0.00 4.75
187 188 3.059188 TCGTCGTTCTTTTCTTCAATGGC 60.059 43.478 0.00 0.00 0.00 4.40
188 189 4.725556 TCGTCGTTCTTTTCTTCAATGG 57.274 40.909 0.00 0.00 0.00 3.16
189 190 5.915857 TGATCGTCGTTCTTTTCTTCAATG 58.084 37.500 5.01 0.00 0.00 2.82
190 191 6.591834 AGATGATCGTCGTTCTTTTCTTCAAT 59.408 34.615 9.28 0.00 0.00 2.57
191 192 5.926542 AGATGATCGTCGTTCTTTTCTTCAA 59.073 36.000 9.28 0.00 0.00 2.69
192 193 5.470368 AGATGATCGTCGTTCTTTTCTTCA 58.530 37.500 9.28 0.00 0.00 3.02
193 194 5.004916 GGAGATGATCGTCGTTCTTTTCTTC 59.995 44.000 9.28 0.00 0.00 2.87
194 195 4.865365 GGAGATGATCGTCGTTCTTTTCTT 59.135 41.667 9.28 0.00 0.00 2.52
195 196 4.158764 AGGAGATGATCGTCGTTCTTTTCT 59.841 41.667 9.28 4.82 0.00 2.52
196 197 4.425520 AGGAGATGATCGTCGTTCTTTTC 58.574 43.478 9.28 0.00 0.00 2.29
197 198 4.425520 GAGGAGATGATCGTCGTTCTTTT 58.574 43.478 9.28 0.00 33.45 2.27
198 199 4.035278 GAGGAGATGATCGTCGTTCTTT 57.965 45.455 9.28 0.00 33.45 2.52
199 200 3.701532 GAGGAGATGATCGTCGTTCTT 57.298 47.619 9.28 0.00 33.45 2.52
205 206 1.081774 CGGCGAGGAGATGATCGTC 60.082 63.158 0.00 6.84 40.97 4.20
206 207 2.556459 CCGGCGAGGAGATGATCGT 61.556 63.158 9.30 0.00 45.00 3.73
207 208 2.256764 CCGGCGAGGAGATGATCG 59.743 66.667 9.30 0.00 45.00 3.69
208 209 3.765051 TCCGGCGAGGAGATGATC 58.235 61.111 9.30 0.00 45.98 2.92
227 228 4.067016 GTTGGTACCACACGCGCG 62.067 66.667 30.96 30.96 0.00 6.86
228 229 3.719144 GGTTGGTACCACACGCGC 61.719 66.667 16.04 0.00 44.36 6.86
248 249 9.869844 CGTACGCTACACTATAACTAAATAACT 57.130 33.333 0.52 0.00 0.00 2.24
249 250 9.651718 ACGTACGCTACACTATAACTAAATAAC 57.348 33.333 16.72 0.00 0.00 1.89
252 253 9.573133 AAAACGTACGCTACACTATAACTAAAT 57.427 29.630 16.72 0.00 0.00 1.40
253 254 8.849490 CAAAACGTACGCTACACTATAACTAAA 58.151 33.333 16.72 0.00 0.00 1.85
254 255 7.008266 GCAAAACGTACGCTACACTATAACTAA 59.992 37.037 16.72 0.00 0.00 2.24
255 256 6.468956 GCAAAACGTACGCTACACTATAACTA 59.531 38.462 16.72 0.00 0.00 2.24
256 257 5.287035 GCAAAACGTACGCTACACTATAACT 59.713 40.000 16.72 0.00 0.00 2.24
257 258 5.060816 TGCAAAACGTACGCTACACTATAAC 59.939 40.000 16.72 0.00 0.00 1.89
258 259 5.159925 TGCAAAACGTACGCTACACTATAA 58.840 37.500 16.72 0.00 0.00 0.98
259 260 4.731720 TGCAAAACGTACGCTACACTATA 58.268 39.130 16.72 0.00 0.00 1.31
260 261 3.577667 TGCAAAACGTACGCTACACTAT 58.422 40.909 16.72 0.00 0.00 2.12
261 262 3.010624 TGCAAAACGTACGCTACACTA 57.989 42.857 16.72 0.00 0.00 2.74
262 263 1.855513 TGCAAAACGTACGCTACACT 58.144 45.000 16.72 0.00 0.00 3.55
263 264 2.649140 TTGCAAAACGTACGCTACAC 57.351 45.000 16.72 3.08 0.00 2.90
264 265 3.989167 AGTATTGCAAAACGTACGCTACA 59.011 39.130 16.72 4.02 0.00 2.74
265 266 4.572950 AGTATTGCAAAACGTACGCTAC 57.427 40.909 16.72 0.00 0.00 3.58
266 267 5.060816 GTGTAGTATTGCAAAACGTACGCTA 59.939 40.000 16.72 1.46 0.00 4.26
267 268 3.989167 TGTAGTATTGCAAAACGTACGCT 59.011 39.130 16.72 0.00 0.00 5.07
268 269 4.076985 GTGTAGTATTGCAAAACGTACGC 58.923 43.478 16.72 6.34 0.00 4.42
269 270 5.107760 ACAGTGTAGTATTGCAAAACGTACG 60.108 40.000 15.01 15.01 0.00 3.67
270 271 6.219302 ACAGTGTAGTATTGCAAAACGTAC 57.781 37.500 1.71 0.99 0.00 3.67
271 272 7.813627 TCATACAGTGTAGTATTGCAAAACGTA 59.186 33.333 1.71 3.87 32.56 3.57
272 273 6.647481 TCATACAGTGTAGTATTGCAAAACGT 59.353 34.615 1.71 0.00 32.56 3.99
273 274 7.056002 TCATACAGTGTAGTATTGCAAAACG 57.944 36.000 1.71 0.00 32.56 3.60
274 275 8.251750 TCTCATACAGTGTAGTATTGCAAAAC 57.748 34.615 1.71 0.24 32.56 2.43
275 276 7.549134 CCTCTCATACAGTGTAGTATTGCAAAA 59.451 37.037 1.71 0.00 32.56 2.44
276 277 7.041721 CCTCTCATACAGTGTAGTATTGCAAA 58.958 38.462 1.71 0.00 32.56 3.68
277 278 6.379988 TCCTCTCATACAGTGTAGTATTGCAA 59.620 38.462 9.25 0.00 32.56 4.08
278 279 5.891551 TCCTCTCATACAGTGTAGTATTGCA 59.108 40.000 9.25 0.00 32.56 4.08
279 280 6.392625 TCCTCTCATACAGTGTAGTATTGC 57.607 41.667 9.25 0.00 32.56 3.56
280 281 6.515862 GCCTCCTCTCATACAGTGTAGTATTG 60.516 46.154 9.25 2.34 32.56 1.90
281 282 5.536916 GCCTCCTCTCATACAGTGTAGTATT 59.463 44.000 9.25 0.00 32.56 1.89
282 283 5.074115 GCCTCCTCTCATACAGTGTAGTAT 58.926 45.833 9.25 0.00 35.14 2.12
283 284 4.079958 TGCCTCCTCTCATACAGTGTAGTA 60.080 45.833 9.25 0.00 0.00 1.82
284 285 3.292460 GCCTCCTCTCATACAGTGTAGT 58.708 50.000 9.25 0.00 0.00 2.73
285 286 3.291584 TGCCTCCTCTCATACAGTGTAG 58.708 50.000 9.25 0.00 0.00 2.74
286 287 3.382083 TGCCTCCTCTCATACAGTGTA 57.618 47.619 5.24 5.24 0.00 2.90
287 288 2.238084 TGCCTCCTCTCATACAGTGT 57.762 50.000 0.00 0.00 0.00 3.55
288 289 3.894427 ACTATGCCTCCTCTCATACAGTG 59.106 47.826 0.00 0.00 0.00 3.66
289 290 3.894427 CACTATGCCTCCTCTCATACAGT 59.106 47.826 0.00 0.00 0.00 3.55
290 291 4.148079 TCACTATGCCTCCTCTCATACAG 58.852 47.826 0.00 0.00 0.00 2.74
295 296 1.570979 TCCTCACTATGCCTCCTCTCA 59.429 52.381 0.00 0.00 0.00 3.27
355 360 2.040544 GTTCACATGCGGGTGGAGG 61.041 63.158 7.59 0.00 39.27 4.30
439 461 0.746659 GTTATGGGTGGATTGGCTGC 59.253 55.000 0.00 0.00 0.00 5.25
440 462 1.402787 GGTTATGGGTGGATTGGCTG 58.597 55.000 0.00 0.00 0.00 4.85
441 463 0.261696 GGGTTATGGGTGGATTGGCT 59.738 55.000 0.00 0.00 0.00 4.75
442 464 0.032615 TGGGTTATGGGTGGATTGGC 60.033 55.000 0.00 0.00 0.00 4.52
443 465 2.597455 GATGGGTTATGGGTGGATTGG 58.403 52.381 0.00 0.00 0.00 3.16
444 466 2.091389 TGGATGGGTTATGGGTGGATTG 60.091 50.000 0.00 0.00 0.00 2.67
445 467 2.222271 TGGATGGGTTATGGGTGGATT 58.778 47.619 0.00 0.00 0.00 3.01
446 468 1.919933 TGGATGGGTTATGGGTGGAT 58.080 50.000 0.00 0.00 0.00 3.41
447 469 1.780309 GATGGATGGGTTATGGGTGGA 59.220 52.381 0.00 0.00 0.00 4.02
448 470 1.782752 AGATGGATGGGTTATGGGTGG 59.217 52.381 0.00 0.00 0.00 4.61
449 471 2.224867 GGAGATGGATGGGTTATGGGTG 60.225 54.545 0.00 0.00 0.00 4.61
450 472 2.065799 GGAGATGGATGGGTTATGGGT 58.934 52.381 0.00 0.00 0.00 4.51
451 473 1.003580 CGGAGATGGATGGGTTATGGG 59.996 57.143 0.00 0.00 0.00 4.00
452 474 1.611673 GCGGAGATGGATGGGTTATGG 60.612 57.143 0.00 0.00 0.00 2.74
453 475 1.813513 GCGGAGATGGATGGGTTATG 58.186 55.000 0.00 0.00 0.00 1.90
454 476 0.321671 CGCGGAGATGGATGGGTTAT 59.678 55.000 0.00 0.00 0.00 1.89
455 477 1.745890 CGCGGAGATGGATGGGTTA 59.254 57.895 0.00 0.00 0.00 2.85
456 478 2.505982 CGCGGAGATGGATGGGTT 59.494 61.111 0.00 0.00 0.00 4.11
480 502 3.365265 GTGGGGCGGCAAGTGAAG 61.365 66.667 12.47 0.00 0.00 3.02
481 503 4.966787 GGTGGGGCGGCAAGTGAA 62.967 66.667 12.47 0.00 0.00 3.18
492 521 1.338389 CGTATTTATAGCCGGGTGGGG 60.338 57.143 18.40 0.00 35.78 4.96
496 525 0.322648 GGCCGTATTTATAGCCGGGT 59.677 55.000 12.58 12.58 40.74 5.28
539 568 5.446860 AGATGATTGAATTGGATGCTCTGT 58.553 37.500 0.00 0.00 0.00 3.41
547 576 5.667172 TCCAGTAGGAGATGATTGAATTGGA 59.333 40.000 0.00 0.00 39.61 3.53
563 592 3.489398 CGCTAGCAAGTTACTCCAGTAGG 60.489 52.174 16.45 0.00 0.00 3.18
585 619 1.841103 GGAGGAGGAGGAGGCCATC 60.841 68.421 5.01 0.00 0.00 3.51
679 723 2.725203 TTCTTACCGCCGCTGTTGCT 62.725 55.000 0.00 0.00 36.97 3.91
682 726 0.669625 GACTTCTTACCGCCGCTGTT 60.670 55.000 0.00 0.00 0.00 3.16
683 727 1.080025 GACTTCTTACCGCCGCTGT 60.080 57.895 0.00 0.00 0.00 4.40
684 728 1.810030 GGACTTCTTACCGCCGCTG 60.810 63.158 0.00 0.00 0.00 5.18
685 729 2.577593 GGACTTCTTACCGCCGCT 59.422 61.111 0.00 0.00 0.00 5.52
693 740 1.132657 TGGTGGGAGTGGGACTTCTTA 60.133 52.381 0.00 0.00 0.00 2.10
1094 1259 3.765511 ACGTGTGGCTAGTAGTAAATGGA 59.234 43.478 0.00 0.00 0.00 3.41
1103 1268 7.630242 ACTAATTAGTAACGTGTGGCTAGTA 57.370 36.000 16.60 0.00 34.13 1.82
1133 1298 5.880332 ACCGTATCTGCAGTACAATTGAAAT 59.120 36.000 14.67 0.00 0.00 2.17
1135 1300 4.629634 CACCGTATCTGCAGTACAATTGAA 59.370 41.667 14.67 0.00 0.00 2.69
1136 1301 4.180817 CACCGTATCTGCAGTACAATTGA 58.819 43.478 14.67 0.00 0.00 2.57
1138 1303 2.936498 GCACCGTATCTGCAGTACAATT 59.064 45.455 14.67 0.66 34.56 2.32
1140 1305 1.734377 CGCACCGTATCTGCAGTACAA 60.734 52.381 14.67 0.00 34.00 2.41
1143 1308 0.179148 CACGCACCGTATCTGCAGTA 60.179 55.000 14.67 2.70 38.32 2.74
1351 1671 6.862209 AGATAAGATAAGATGATGGCGACTC 58.138 40.000 0.00 0.00 0.00 3.36
1377 1697 1.134877 GGTAGTGGAGGTTAAGCCGTC 60.135 57.143 0.00 0.00 43.70 4.79
1501 1834 2.251818 CTTGCCCCATCTAGCTAGCTA 58.748 52.381 22.85 22.85 0.00 3.32
1502 1835 1.055040 CTTGCCCCATCTAGCTAGCT 58.945 55.000 23.12 23.12 0.00 3.32
1557 1902 2.532317 CGTTGTTAAAAAGTTGGCGGTG 59.468 45.455 0.00 0.00 0.00 4.94
1561 1906 3.479590 GTCGTCGTTGTTAAAAAGTTGGC 59.520 43.478 0.00 0.00 0.00 4.52
1603 1974 2.355818 GCTGGTTAGAATCTTTCCGGGT 60.356 50.000 0.00 0.00 0.00 5.28
1693 2076 0.879090 GAACACCAAAAGCTACCCCG 59.121 55.000 0.00 0.00 0.00 5.73
1694 2077 2.287977 AGAACACCAAAAGCTACCCC 57.712 50.000 0.00 0.00 0.00 4.95
1695 2078 2.296190 CCAAGAACACCAAAAGCTACCC 59.704 50.000 0.00 0.00 0.00 3.69
1725 2109 4.624452 CGAGATCGATGTACCGTGATACTA 59.376 45.833 0.54 0.00 43.02 1.82
1726 2110 3.432592 CGAGATCGATGTACCGTGATACT 59.567 47.826 0.54 0.00 43.02 2.12
1727 2111 3.186001 ACGAGATCGATGTACCGTGATAC 59.814 47.826 0.54 0.00 43.02 2.24
1728 2112 3.185797 CACGAGATCGATGTACCGTGATA 59.814 47.826 23.84 0.00 46.87 2.15
1756 2140 3.003689 GGCGATGCAGTGCTATGTTATTT 59.996 43.478 17.60 0.00 0.00 1.40
1759 2143 1.134551 TGGCGATGCAGTGCTATGTTA 60.135 47.619 17.60 0.00 0.00 2.41
1761 2145 1.091771 GTGGCGATGCAGTGCTATGT 61.092 55.000 17.60 0.00 0.00 2.29
1764 2148 1.741401 GTGTGGCGATGCAGTGCTA 60.741 57.895 17.60 3.01 0.00 3.49
1765 2149 3.052082 GTGTGGCGATGCAGTGCT 61.052 61.111 17.60 1.28 0.00 4.40
1769 2153 0.179076 TCCTATGTGTGGCGATGCAG 60.179 55.000 0.00 0.00 0.00 4.41
1775 2159 0.941463 GCGATCTCCTATGTGTGGCG 60.941 60.000 0.00 0.00 0.00 5.69
1776 2160 0.104855 TGCGATCTCCTATGTGTGGC 59.895 55.000 0.00 0.00 0.00 5.01
1777 2161 2.036346 TCATGCGATCTCCTATGTGTGG 59.964 50.000 0.00 0.00 0.00 4.17
1778 2162 3.375782 TCATGCGATCTCCTATGTGTG 57.624 47.619 0.00 0.00 0.00 3.82
1780 2164 3.611549 CGATTCATGCGATCTCCTATGTG 59.388 47.826 0.00 0.00 0.00 3.21
1819 2207 1.540146 CGTGTCAGTGGGTGTCATTCA 60.540 52.381 0.00 0.00 0.00 2.57
1822 2210 1.371183 CCGTGTCAGTGGGTGTCAT 59.629 57.895 0.00 0.00 0.00 3.06
1829 2234 2.430921 GCTCGACCGTGTCAGTGG 60.431 66.667 5.15 0.00 32.09 4.00
1846 2251 1.063027 CCTGCACATACAGCAATGTCG 59.937 52.381 0.00 0.00 42.17 4.35
1853 2258 3.190878 GCACCCTGCACATACAGC 58.809 61.111 0.00 0.00 44.26 4.40
2275 2697 8.891720 TGCAGCATCGCATATATATATTTTTCA 58.108 29.630 2.28 0.00 36.86 2.69
2294 2717 3.398920 GCACGTACGATGCAGCAT 58.601 55.556 26.74 7.91 42.88 3.79
2299 2722 1.876714 ACGGATGCACGTACGATGC 60.877 57.895 24.41 25.22 46.58 3.91
2300 2723 1.479420 CCACGGATGCACGTACGATG 61.479 60.000 24.41 16.84 46.75 3.84
2301 2724 1.226859 CCACGGATGCACGTACGAT 60.227 57.895 24.41 4.72 46.75 3.73
2302 2725 2.179767 CCACGGATGCACGTACGA 59.820 61.111 24.41 0.00 46.75 3.43
2303 2726 3.550992 GCCACGGATGCACGTACG 61.551 66.667 15.01 15.01 46.75 3.67
2304 2727 3.550992 CGCCACGGATGCACGTAC 61.551 66.667 1.70 0.00 46.75 3.67
2305 2728 3.975083 GACGCCACGGATGCACGTA 62.975 63.158 1.70 0.00 46.75 3.57
2323 2746 0.529773 ATATGTAGTGCGCACCCACG 60.530 55.000 35.51 0.00 40.59 4.94
2325 2748 3.762407 AATATATGTAGTGCGCACCCA 57.238 42.857 35.51 30.50 0.00 4.51
2352 2775 7.878127 GCGGCCATCCATTAGTTACATATATAT 59.122 37.037 2.24 0.00 0.00 0.86
2353 2776 7.070696 AGCGGCCATCCATTAGTTACATATATA 59.929 37.037 2.24 0.00 0.00 0.86
2354 2777 6.055588 GCGGCCATCCATTAGTTACATATAT 58.944 40.000 2.24 0.00 0.00 0.86
2359 2782 1.488812 AGCGGCCATCCATTAGTTACA 59.511 47.619 2.24 0.00 0.00 2.41
2360 2783 2.143925 GAGCGGCCATCCATTAGTTAC 58.856 52.381 2.24 0.00 0.00 2.50
2362 2785 0.532862 CGAGCGGCCATCCATTAGTT 60.533 55.000 2.24 0.00 0.00 2.24
2364 2787 0.036952 ATCGAGCGGCCATCCATTAG 60.037 55.000 2.24 0.00 0.00 1.73
2365 2788 0.037326 GATCGAGCGGCCATCCATTA 60.037 55.000 2.24 0.00 0.00 1.90
2369 2792 2.356793 CAGATCGAGCGGCCATCC 60.357 66.667 2.24 0.00 0.00 3.51
2370 2793 3.040763 GCAGATCGAGCGGCCATC 61.041 66.667 15.09 0.00 0.00 3.51
2381 2804 3.951979 AAATCAACCGATTCGCAGATC 57.048 42.857 0.00 0.00 41.12 2.75
2382 2805 5.811399 TTAAAATCAACCGATTCGCAGAT 57.189 34.783 0.00 0.80 41.12 2.90
2384 2807 7.186804 ACTAATTAAAATCAACCGATTCGCAG 58.813 34.615 0.00 0.00 41.12 5.18
2385 2808 7.079182 ACTAATTAAAATCAACCGATTCGCA 57.921 32.000 0.00 0.00 41.12 5.10
2386 2809 8.333186 ACTACTAATTAAAATCAACCGATTCGC 58.667 33.333 0.00 0.00 41.12 4.70
2390 2813 7.773690 AGGCACTACTAATTAAAATCAACCGAT 59.226 33.333 0.00 0.00 36.02 4.18
2391 2814 7.107542 AGGCACTACTAATTAAAATCAACCGA 58.892 34.615 0.00 0.00 36.02 4.69
2392 2815 7.316544 AGGCACTACTAATTAAAATCAACCG 57.683 36.000 0.00 0.00 36.02 4.44
2401 2824 9.826574 CCTGTTACATAAGGCACTACTAATTAA 57.173 33.333 0.00 0.00 38.49 1.40
2402 2825 8.426489 CCCTGTTACATAAGGCACTACTAATTA 58.574 37.037 0.00 0.00 38.49 1.40
2403 2826 7.092578 ACCCTGTTACATAAGGCACTACTAATT 60.093 37.037 0.00 0.00 38.49 1.40
2406 2829 5.128171 CACCCTGTTACATAAGGCACTACTA 59.872 44.000 0.00 0.00 38.49 1.82
2407 2830 4.081087 CACCCTGTTACATAAGGCACTACT 60.081 45.833 0.00 0.00 38.49 2.57
2408 2831 4.081309 TCACCCTGTTACATAAGGCACTAC 60.081 45.833 0.00 0.00 38.49 2.73
2423 2846 3.681835 GGCGACGTCTCACCCTGT 61.682 66.667 14.70 0.00 0.00 4.00
2455 2878 1.201647 ACGATGGACAACGACACTAGG 59.798 52.381 8.95 0.00 0.00 3.02
2456 2879 2.251040 CACGATGGACAACGACACTAG 58.749 52.381 8.95 0.00 0.00 2.57
2466 2889 1.816835 GACTGAGGTACACGATGGACA 59.183 52.381 0.00 0.00 31.17 4.02
2481 2904 4.956700 ACTATAAGGCTAAGCACAGACTGA 59.043 41.667 10.08 0.00 32.80 3.41
2503 2932 7.857389 CCAACATTAAGTGATACATGCATGTAC 59.143 37.037 35.53 27.08 45.11 2.90
2532 2961 3.545703 GTGGATGGACAATTGGAGTAGG 58.454 50.000 10.83 0.00 0.00 3.18
2556 2985 3.775202 CCACAGATATATAGAGCGGTGC 58.225 50.000 9.90 0.00 0.00 5.01
2557 2986 3.193479 TGCCACAGATATATAGAGCGGTG 59.807 47.826 8.63 8.63 0.00 4.94
2558 2987 3.431415 TGCCACAGATATATAGAGCGGT 58.569 45.455 0.00 0.00 0.00 5.68
2559 2988 4.456280 TTGCCACAGATATATAGAGCGG 57.544 45.455 0.00 0.00 0.00 5.52
2560 2989 8.654230 AAATATTGCCACAGATATATAGAGCG 57.346 34.615 0.00 0.00 0.00 5.03
2568 2997 9.359653 AGAAAAGCTAAATATTGCCACAGATAT 57.640 29.630 0.00 0.00 0.00 1.63
2574 3003 9.023967 CAATGTAGAAAAGCTAAATATTGCCAC 57.976 33.333 0.00 0.00 0.00 5.01
2588 3017 5.645067 TGCACAGGAGATCAATGTAGAAAAG 59.355 40.000 0.00 0.00 0.00 2.27
2606 3035 2.708051 ACAAGGATGACAGATGCACAG 58.292 47.619 0.00 0.00 0.00 3.66
2610 3039 2.996631 AGGAACAAGGATGACAGATGC 58.003 47.619 0.00 0.00 0.00 3.91
2617 3046 3.119743 CGTACGTGTAGGAACAAGGATGA 60.120 47.826 7.22 0.00 37.17 2.92
2632 3061 0.389296 TTGATCACAGGCCGTACGTG 60.389 55.000 15.21 8.67 40.08 4.49
2643 3072 7.255590 GGAAGAGTCTTTTTGGATTTGATCACA 60.256 37.037 6.88 0.00 0.00 3.58
2646 3075 6.435591 AGGGAAGAGTCTTTTTGGATTTGATC 59.564 38.462 6.88 0.00 0.00 2.92
2648 3077 5.705400 AGGGAAGAGTCTTTTTGGATTTGA 58.295 37.500 6.88 0.00 0.00 2.69
2649 3078 6.040842 TGAAGGGAAGAGTCTTTTTGGATTTG 59.959 38.462 6.88 0.00 0.00 2.32
2651 3080 5.705400 TGAAGGGAAGAGTCTTTTTGGATT 58.295 37.500 6.88 0.00 0.00 3.01
2653 3082 4.788925 TGAAGGGAAGAGTCTTTTTGGA 57.211 40.909 6.88 0.00 0.00 3.53
2654 3083 5.772169 AGAATGAAGGGAAGAGTCTTTTTGG 59.228 40.000 6.88 0.00 0.00 3.28
2659 3493 5.280419 CCAAGAGAATGAAGGGAAGAGTCTT 60.280 44.000 4.68 4.68 0.00 3.01
2667 3501 6.642733 AGTTTATCCAAGAGAATGAAGGGA 57.357 37.500 0.00 0.00 0.00 4.20
2687 3521 6.124316 TCTACCCGCTCTCTATATGTAGTT 57.876 41.667 0.00 0.00 0.00 2.24
2689 3523 6.824196 TCAATCTACCCGCTCTCTATATGTAG 59.176 42.308 0.00 0.00 0.00 2.74
2691 3525 5.571285 TCAATCTACCCGCTCTCTATATGT 58.429 41.667 0.00 0.00 0.00 2.29
2692 3526 6.502652 CATCAATCTACCCGCTCTCTATATG 58.497 44.000 0.00 0.00 0.00 1.78
2693 3527 5.068460 GCATCAATCTACCCGCTCTCTATAT 59.932 44.000 0.00 0.00 0.00 0.86
2694 3528 4.399618 GCATCAATCTACCCGCTCTCTATA 59.600 45.833 0.00 0.00 0.00 1.31
2695 3529 3.194542 GCATCAATCTACCCGCTCTCTAT 59.805 47.826 0.00 0.00 0.00 1.98
2696 3530 2.558795 GCATCAATCTACCCGCTCTCTA 59.441 50.000 0.00 0.00 0.00 2.43
2697 3531 1.342819 GCATCAATCTACCCGCTCTCT 59.657 52.381 0.00 0.00 0.00 3.10
2698 3532 1.606737 GGCATCAATCTACCCGCTCTC 60.607 57.143 0.00 0.00 0.00 3.20
2699 3533 0.394565 GGCATCAATCTACCCGCTCT 59.605 55.000 0.00 0.00 0.00 4.09
2703 3537 2.917933 TCAAAGGCATCAATCTACCCG 58.082 47.619 0.00 0.00 0.00 5.28
2707 3541 4.166725 AGGGACATCAAAGGCATCAATCTA 59.833 41.667 0.00 0.00 0.00 1.98
2708 3542 3.053095 AGGGACATCAAAGGCATCAATCT 60.053 43.478 0.00 0.00 0.00 2.40
2710 3544 3.393426 AGGGACATCAAAGGCATCAAT 57.607 42.857 0.00 0.00 0.00 2.57
2711 3545 2.905415 AGGGACATCAAAGGCATCAA 57.095 45.000 0.00 0.00 0.00 2.57
2712 3546 2.905415 AAGGGACATCAAAGGCATCA 57.095 45.000 0.00 0.00 0.00 3.07
2737 3575 6.765036 CCATGTATAGACAGCATCAGTTCTTT 59.235 38.462 0.00 0.00 39.50 2.52
2743 3581 4.268797 AGCCATGTATAGACAGCATCAG 57.731 45.455 4.77 0.00 39.50 2.90
2745 3583 3.188048 GCAAGCCATGTATAGACAGCATC 59.812 47.826 4.77 0.00 39.50 3.91
2748 3586 2.547211 CAGCAAGCCATGTATAGACAGC 59.453 50.000 0.00 0.00 39.50 4.40
2749 3587 3.136763 CCAGCAAGCCATGTATAGACAG 58.863 50.000 0.00 0.00 39.50 3.51
2750 3588 2.505407 ACCAGCAAGCCATGTATAGACA 59.495 45.455 0.00 0.00 40.72 3.41
2753 3591 5.764686 TGATTTACCAGCAAGCCATGTATAG 59.235 40.000 0.00 0.00 0.00 1.31
2755 3593 4.535781 TGATTTACCAGCAAGCCATGTAT 58.464 39.130 0.00 0.00 0.00 2.29
2797 3649 3.084786 CCAGGAAGGACATCCAAAGTTC 58.915 50.000 0.00 0.00 42.27 3.01
2804 3656 1.225704 CCAGCCAGGAAGGACATCC 59.774 63.158 0.00 0.00 41.22 3.51
2820 3687 2.041922 CTCCATCTCCCGGTCCCA 60.042 66.667 0.00 0.00 0.00 4.37
2824 3691 0.396417 CTCAGTCTCCATCTCCCGGT 60.396 60.000 0.00 0.00 0.00 5.28
2841 3708 1.007502 ATGCATCTCGAGCGAGCTC 60.008 57.895 14.61 14.61 41.71 4.09
2846 3713 1.275953 CTTGCATGCATCTCGAGCG 59.724 57.895 23.37 2.08 33.85 5.03
2873 3740 1.381928 AATCAAGCATGGCCAGCTCG 61.382 55.000 24.11 16.56 42.53 5.03
2971 3851 0.888736 CATCCAACGGAGCACACCAA 60.889 55.000 0.00 0.00 34.05 3.67
3035 3915 2.332654 GCCAAACGCCCGTGAAGAT 61.333 57.895 0.00 0.00 0.00 2.40
3127 4014 1.171308 CACAAGCAAGGGGATGACAG 58.829 55.000 0.00 0.00 0.00 3.51
3134 4021 3.140325 TCTAGAAACACAAGCAAGGGG 57.860 47.619 0.00 0.00 0.00 4.79
3147 4034 4.315803 CAGAGAAGCCGGTTTTCTAGAAA 58.684 43.478 19.16 13.99 35.14 2.52
3170 4058 3.756117 AGGAACTGTCTAAAAAGCAGGG 58.244 45.455 0.00 0.00 37.18 4.45
3171 4059 5.774498 AAAGGAACTGTCTAAAAAGCAGG 57.226 39.130 0.00 0.00 40.86 4.85
3173 4061 8.524487 TGTTAAAAAGGAACTGTCTAAAAAGCA 58.476 29.630 0.00 0.00 40.86 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.