Multiple sequence alignment - TraesCS5A01G535100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G535100 chr5A 100.000 2450 0 0 1 2450 691975837 691978286 0.000000e+00 4525.0
1 TraesCS5A01G535100 chr4D 90.078 1290 61 33 696 1951 507164372 507163116 0.000000e+00 1611.0
2 TraesCS5A01G535100 chr4D 91.143 350 18 7 1 347 507167525 507167186 1.720000e-126 462.0
3 TraesCS5A01G535100 chr4B 87.058 1329 109 30 693 1996 654440479 654441769 0.000000e+00 1443.0
4 TraesCS5A01G535100 chr4B 92.523 321 20 3 1 317 654439778 654440098 7.980000e-125 457.0
5 TraesCS5A01G535100 chr4B 98.413 63 0 1 2389 2450 476653581 476653519 2.580000e-20 110.0
6 TraesCS5A01G535100 chr3D 85.600 250 34 2 2125 2373 247910031 247910279 6.720000e-66 261.0
7 TraesCS5A01G535100 chr2B 88.095 210 20 5 2123 2329 683778486 683778693 6.770000e-61 244.0
8 TraesCS5A01G535100 chr2B 83.398 259 33 6 2123 2373 683784024 683784280 5.270000e-57 231.0
9 TraesCS5A01G535100 chr2B 81.349 252 36 8 2123 2366 683781658 683781906 6.910000e-46 195.0
10 TraesCS5A01G535100 chr2B 94.444 72 2 2 2380 2450 763165317 763165387 2.580000e-20 110.0
11 TraesCS5A01G535100 chr2B 100.000 29 0 0 1288 1316 22369346 22369318 1.000000e-03 54.7
12 TraesCS5A01G535100 chr1A 83.858 254 34 5 2125 2371 97163781 97164034 4.070000e-58 235.0
13 TraesCS5A01G535100 chr4A 86.239 218 23 5 2126 2336 484833244 484833027 1.890000e-56 230.0
14 TraesCS5A01G535100 chr4A 100.000 63 0 0 2388 2450 738979985 738979923 1.540000e-22 117.0
15 TraesCS5A01G535100 chr4A 98.413 63 1 0 2388 2450 578101763 578101701 7.160000e-21 111.0
16 TraesCS5A01G535100 chr4A 94.203 69 4 0 2382 2450 563214061 563214129 3.330000e-19 106.0
17 TraesCS5A01G535100 chr4A 100.000 30 0 0 1287 1316 426205849 426205878 3.400000e-04 56.5
18 TraesCS5A01G535100 chr4A 100.000 30 0 0 1287 1316 561356887 561356916 3.400000e-04 56.5
19 TraesCS5A01G535100 chr2D 86.321 212 20 6 2158 2366 118470204 118469999 3.170000e-54 222.0
20 TraesCS5A01G535100 chr6A 85.185 216 30 2 2159 2372 79171457 79171672 1.140000e-53 220.0
21 TraesCS5A01G535100 chr6A 85.782 211 23 4 2159 2362 79193294 79193504 1.480000e-52 217.0
22 TraesCS5A01G535100 chr7D 85.714 210 22 4 2123 2325 370865118 370864910 5.310000e-52 215.0
23 TraesCS5A01G535100 chr1B 82.609 253 33 7 2125 2367 657184868 657184617 1.910000e-51 213.0
24 TraesCS5A01G535100 chr3A 86.000 200 21 3 2126 2318 711114582 711114781 8.880000e-50 207.0
25 TraesCS5A01G535100 chr3A 100.000 60 0 0 2391 2450 38001122 38001181 7.160000e-21 111.0
26 TraesCS5A01G535100 chr3A 95.522 67 2 1 2384 2450 599403984 599404049 3.330000e-19 106.0
27 TraesCS5A01G535100 chrUn 100.000 60 0 0 2391 2450 87962422 87962481 7.160000e-21 111.0
28 TraesCS5A01G535100 chr5B 90.000 90 3 4 2367 2450 426648886 426648797 7.160000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G535100 chr5A 691975837 691978286 2449 False 4525.000000 4525 100.000000 1 2450 1 chr5A.!!$F1 2449
1 TraesCS5A01G535100 chr4D 507163116 507167525 4409 True 1036.500000 1611 90.610500 1 1951 2 chr4D.!!$R1 1950
2 TraesCS5A01G535100 chr4B 654439778 654441769 1991 False 950.000000 1443 89.790500 1 1996 2 chr4B.!!$F1 1995
3 TraesCS5A01G535100 chr2B 683778486 683784280 5794 False 223.333333 244 84.280667 2123 2373 3 chr2B.!!$F2 250

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 504 0.036952 TGCTGCACTCTGGTAAGCTC 60.037 55.0 0.0 0.0 36.14 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 4698 0.032813 ACCCCATCTGCTTTCCATGG 60.033 55.0 4.97 4.97 37.42 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 1.126329 ATCATCCATCCCTGCTCGCT 61.126 55.000 0.00 0.00 0.00 4.93
102 103 3.531207 CCATCCCTGCTCGCTCGA 61.531 66.667 0.00 0.00 0.00 4.04
156 157 2.359478 GGAACCCGATGCGTTGGT 60.359 61.111 11.45 3.39 0.00 3.67
167 168 2.874751 CGTTGGTCGATTTGGCCC 59.125 61.111 0.00 0.00 42.86 5.80
203 204 1.203100 AGGGCTTTGGTCTCTTGCAAT 60.203 47.619 0.00 0.00 0.00 3.56
284 290 4.031129 CAGCCAGCCAGCCAGTCT 62.031 66.667 0.00 0.00 0.00 3.24
308 314 2.039818 CACATCATGCAGAGGAAGCT 57.960 50.000 0.00 0.00 0.00 3.74
312 318 0.103755 TCATGCAGAGGAAGCTAGCG 59.896 55.000 9.55 0.00 0.00 4.26
336 342 2.001361 CTGCTTAGCTGGGCACATGC 62.001 60.000 5.60 0.00 41.14 4.06
376 467 3.990469 CGGGTATGCATTATCACTCTGAC 59.010 47.826 3.54 0.00 0.00 3.51
394 485 4.777896 TCTGACTAGCTTAATCAGGGTGTT 59.222 41.667 16.96 0.00 40.28 3.32
396 487 3.610911 ACTAGCTTAATCAGGGTGTTGC 58.389 45.455 0.00 0.00 0.00 4.17
406 497 2.263741 GGGTGTTGCTGCACTCTGG 61.264 63.158 0.00 0.00 36.93 3.86
413 504 0.036952 TGCTGCACTCTGGTAAGCTC 60.037 55.000 0.00 0.00 36.14 4.09
416 507 1.001293 CTGCACTCTGGTAAGCTCACA 59.999 52.381 0.00 0.00 0.00 3.58
419 510 2.093764 GCACTCTGGTAAGCTCACATCT 60.094 50.000 0.00 0.00 0.00 2.90
421 512 3.446873 CACTCTGGTAAGCTCACATCTCT 59.553 47.826 0.00 0.00 0.00 3.10
422 513 3.446873 ACTCTGGTAAGCTCACATCTCTG 59.553 47.826 0.00 0.00 0.00 3.35
423 514 2.167281 TCTGGTAAGCTCACATCTCTGC 59.833 50.000 0.00 0.00 0.00 4.26
425 2105 0.926846 GTAAGCTCACATCTCTGCGC 59.073 55.000 0.00 0.00 0.00 6.09
437 2117 1.136690 CTCTGCGCGTCAACTGTTAA 58.863 50.000 8.43 0.00 0.00 2.01
444 2124 4.626172 TGCGCGTCAACTGTTAATACATAA 59.374 37.500 8.43 0.00 32.86 1.90
445 2125 5.292345 TGCGCGTCAACTGTTAATACATAAT 59.708 36.000 8.43 0.00 32.86 1.28
475 2524 5.306532 GCATATGTGCCTAATTCCATCTG 57.693 43.478 2.47 0.00 45.76 2.90
477 2526 5.123502 GCATATGTGCCTAATTCCATCTGAG 59.876 44.000 2.47 0.00 45.76 3.35
482 2834 2.483714 GCCTAATTCCATCTGAGCGACA 60.484 50.000 0.00 0.00 0.00 4.35
484 2836 3.557595 CCTAATTCCATCTGAGCGACAAC 59.442 47.826 0.00 0.00 0.00 3.32
486 2838 2.839486 TTCCATCTGAGCGACAACTT 57.161 45.000 0.00 0.00 0.00 2.66
490 2842 4.433615 TCCATCTGAGCGACAACTTATTC 58.566 43.478 0.00 0.00 0.00 1.75
491 2843 3.557595 CCATCTGAGCGACAACTTATTCC 59.442 47.826 0.00 0.00 0.00 3.01
493 2845 1.927174 CTGAGCGACAACTTATTCCGG 59.073 52.381 0.00 0.00 0.00 5.14
501 2853 1.479323 CAACTTATTCCGGACGGAGGA 59.521 52.381 13.64 0.22 46.06 3.71
508 2911 1.067582 CCGGACGGAGGAAGTATGC 59.932 63.158 4.40 0.00 37.50 3.14
510 2913 0.249073 CGGACGGAGGAAGTATGCTG 60.249 60.000 0.00 0.00 0.00 4.41
537 3080 4.333633 GCTTGTGCTTAGACTTCATGAC 57.666 45.455 0.00 0.00 36.03 3.06
538 3081 3.748048 GCTTGTGCTTAGACTTCATGACA 59.252 43.478 0.00 0.00 36.03 3.58
542 3085 3.123621 GTGCTTAGACTTCATGACAACCG 59.876 47.826 0.00 0.00 0.00 4.44
545 3088 4.451096 GCTTAGACTTCATGACAACCGAAA 59.549 41.667 0.00 0.00 0.00 3.46
558 3101 5.818336 TGACAACCGAAATGACTTCTGTTAA 59.182 36.000 0.00 0.00 38.86 2.01
564 3107 5.048713 CCGAAATGACTTCTGTTAAGGCTTT 60.049 40.000 4.45 0.00 31.20 3.51
570 3113 6.398918 TGACTTCTGTTAAGGCTTTAGCTAG 58.601 40.000 4.45 5.85 41.70 3.42
571 3114 5.735766 ACTTCTGTTAAGGCTTTAGCTAGG 58.264 41.667 4.45 0.00 41.70 3.02
573 3116 5.757099 TCTGTTAAGGCTTTAGCTAGGTT 57.243 39.130 4.45 0.00 41.70 3.50
574 3117 6.123045 TCTGTTAAGGCTTTAGCTAGGTTT 57.877 37.500 4.45 0.00 41.70 3.27
575 3118 5.938125 TCTGTTAAGGCTTTAGCTAGGTTTG 59.062 40.000 4.45 0.00 41.70 2.93
577 3120 5.938125 TGTTAAGGCTTTAGCTAGGTTTGAG 59.062 40.000 4.45 0.00 41.70 3.02
578 3121 4.910458 AAGGCTTTAGCTAGGTTTGAGA 57.090 40.909 0.00 0.00 41.70 3.27
579 3122 4.910458 AGGCTTTAGCTAGGTTTGAGAA 57.090 40.909 0.00 0.00 41.70 2.87
580 3123 5.443230 AGGCTTTAGCTAGGTTTGAGAAT 57.557 39.130 0.00 0.00 41.70 2.40
581 3124 5.432645 AGGCTTTAGCTAGGTTTGAGAATC 58.567 41.667 0.00 0.00 41.70 2.52
582 3125 5.045578 AGGCTTTAGCTAGGTTTGAGAATCA 60.046 40.000 0.00 0.00 42.39 2.57
583 3126 6.743575 GCTTTAGCTAGGTTTGAGAATCAA 57.256 37.500 0.00 0.00 45.76 2.57
584 3127 7.326968 GCTTTAGCTAGGTTTGAGAATCAAT 57.673 36.000 0.00 0.00 46.28 2.57
585 3128 7.413644 GCTTTAGCTAGGTTTGAGAATCAATC 58.586 38.462 0.00 0.00 46.28 2.67
586 3129 7.281999 GCTTTAGCTAGGTTTGAGAATCAATCT 59.718 37.037 0.00 0.00 46.28 2.40
596 3139 3.810310 AGAATCAATCTCTGGACGGAC 57.190 47.619 0.00 0.00 30.46 4.79
599 3142 0.895530 TCAATCTCTGGACGGACACC 59.104 55.000 0.00 0.00 0.00 4.16
600 3143 0.608130 CAATCTCTGGACGGACACCA 59.392 55.000 0.00 0.00 35.96 4.17
601 3144 1.208052 CAATCTCTGGACGGACACCAT 59.792 52.381 0.00 0.00 36.79 3.55
604 3147 0.826715 CTCTGGACGGACACCATCAT 59.173 55.000 0.00 0.00 36.79 2.45
605 3148 0.536724 TCTGGACGGACACCATCATG 59.463 55.000 0.00 0.00 36.79 3.07
606 3149 1.078497 TGGACGGACACCATCATGC 60.078 57.895 0.00 0.00 32.03 4.06
607 3150 1.078497 GGACGGACACCATCATGCA 60.078 57.895 0.00 0.00 0.00 3.96
608 3151 0.464373 GGACGGACACCATCATGCAT 60.464 55.000 0.00 0.00 0.00 3.96
609 3152 0.940126 GACGGACACCATCATGCATC 59.060 55.000 0.00 0.00 0.00 3.91
610 3153 0.811219 ACGGACACCATCATGCATCG 60.811 55.000 0.00 0.00 0.00 3.84
612 3155 1.650912 GACACCATCATGCATCGGC 59.349 57.895 0.00 0.00 41.68 5.54
613 3156 2.109538 GACACCATCATGCATCGGCG 62.110 60.000 0.00 0.00 45.35 6.46
615 3158 0.879839 CACCATCATGCATCGGCGTA 60.880 55.000 6.85 0.00 45.35 4.42
617 3160 1.159285 CCATCATGCATCGGCGTATT 58.841 50.000 6.85 0.00 45.35 1.89
618 3161 2.289382 ACCATCATGCATCGGCGTATTA 60.289 45.455 6.85 0.00 45.35 0.98
619 3162 2.094258 CCATCATGCATCGGCGTATTAC 59.906 50.000 6.85 0.00 45.35 1.89
621 3164 2.403259 TCATGCATCGGCGTATTACTG 58.597 47.619 6.85 0.00 45.35 2.74
622 3165 1.136252 CATGCATCGGCGTATTACTGC 60.136 52.381 6.85 8.37 45.35 4.40
624 3167 0.508641 GCATCGGCGTATTACTGCTG 59.491 55.000 6.85 11.04 38.85 4.41
628 3171 1.475280 TCGGCGTATTACTGCTGAAGT 59.525 47.619 6.85 0.00 43.17 3.01
629 3172 2.684374 TCGGCGTATTACTGCTGAAGTA 59.316 45.455 6.85 0.00 43.17 2.24
630 3173 2.787680 CGGCGTATTACTGCTGAAGTAC 59.212 50.000 0.00 0.00 41.21 2.73
632 3175 4.430908 GGCGTATTACTGCTGAAGTACTT 58.569 43.478 8.13 8.13 41.21 2.24
636 3179 6.558009 CGTATTACTGCTGAAGTACTTGGTA 58.442 40.000 14.14 4.46 41.21 3.25
637 3180 6.471519 CGTATTACTGCTGAAGTACTTGGTAC 59.528 42.308 14.14 0.00 41.21 3.34
638 3181 5.794726 TTACTGCTGAAGTACTTGGTACA 57.205 39.130 14.14 3.64 41.21 2.90
639 3182 4.891992 ACTGCTGAAGTACTTGGTACAT 57.108 40.909 14.14 0.00 41.03 2.29
640 3183 5.228945 ACTGCTGAAGTACTTGGTACATT 57.771 39.130 14.14 0.00 41.03 2.71
641 3184 4.997395 ACTGCTGAAGTACTTGGTACATTG 59.003 41.667 14.14 1.18 41.03 2.82
642 3185 5.221641 ACTGCTGAAGTACTTGGTACATTGA 60.222 40.000 14.14 0.00 41.03 2.57
643 3186 4.994852 TGCTGAAGTACTTGGTACATTGAC 59.005 41.667 14.14 0.00 41.03 3.18
644 3187 4.994852 GCTGAAGTACTTGGTACATTGACA 59.005 41.667 14.14 0.00 41.03 3.58
645 3188 5.120830 GCTGAAGTACTTGGTACATTGACAG 59.879 44.000 14.14 10.58 41.03 3.51
646 3189 6.413783 TGAAGTACTTGGTACATTGACAGA 57.586 37.500 14.14 0.00 41.03 3.41
647 3190 7.004555 TGAAGTACTTGGTACATTGACAGAT 57.995 36.000 14.14 0.00 41.03 2.90
648 3191 8.129496 TGAAGTACTTGGTACATTGACAGATA 57.871 34.615 14.14 0.00 41.03 1.98
649 3192 8.033038 TGAAGTACTTGGTACATTGACAGATAC 58.967 37.037 14.14 0.00 41.03 2.24
650 3193 6.561614 AGTACTTGGTACATTGACAGATACG 58.438 40.000 9.94 0.00 41.03 3.06
651 3194 5.401531 ACTTGGTACATTGACAGATACGT 57.598 39.130 0.00 0.00 39.30 3.57
652 3195 5.408356 ACTTGGTACATTGACAGATACGTC 58.592 41.667 0.00 0.00 39.30 4.34
653 3196 4.380841 TGGTACATTGACAGATACGTCC 57.619 45.455 0.00 0.00 34.88 4.79
654 3197 4.021229 TGGTACATTGACAGATACGTCCT 58.979 43.478 0.00 0.00 34.88 3.85
655 3198 4.142249 TGGTACATTGACAGATACGTCCTG 60.142 45.833 14.15 14.15 34.88 3.86
656 3199 4.097437 GGTACATTGACAGATACGTCCTGA 59.903 45.833 20.43 3.36 34.88 3.86
657 3200 4.377839 ACATTGACAGATACGTCCTGAG 57.622 45.455 20.43 9.61 34.88 3.35
658 3201 2.941453 TTGACAGATACGTCCTGAGC 57.059 50.000 20.43 13.42 34.88 4.26
659 3202 2.130272 TGACAGATACGTCCTGAGCT 57.870 50.000 20.43 0.00 34.88 4.09
660 3203 3.277142 TGACAGATACGTCCTGAGCTA 57.723 47.619 20.43 5.09 34.88 3.32
661 3204 3.206964 TGACAGATACGTCCTGAGCTAG 58.793 50.000 20.43 0.00 34.88 3.42
662 3205 1.950909 ACAGATACGTCCTGAGCTAGC 59.049 52.381 20.43 6.62 35.69 3.42
663 3206 2.226330 CAGATACGTCCTGAGCTAGCT 58.774 52.381 19.45 19.45 33.65 3.32
664 3207 3.181453 ACAGATACGTCCTGAGCTAGCTA 60.181 47.826 19.38 0.00 35.69 3.32
665 3208 3.815962 CAGATACGTCCTGAGCTAGCTAA 59.184 47.826 19.38 9.97 33.65 3.09
666 3209 4.276183 CAGATACGTCCTGAGCTAGCTAAA 59.724 45.833 19.38 8.39 33.65 1.85
667 3210 4.517453 AGATACGTCCTGAGCTAGCTAAAG 59.483 45.833 19.38 17.68 0.00 1.85
668 3211 1.751924 ACGTCCTGAGCTAGCTAAAGG 59.248 52.381 28.75 28.75 33.56 3.11
669 3212 1.751924 CGTCCTGAGCTAGCTAAAGGT 59.248 52.381 31.11 8.48 33.83 3.50
670 3213 2.166664 CGTCCTGAGCTAGCTAAAGGTT 59.833 50.000 31.11 7.80 33.83 3.50
671 3214 3.368531 CGTCCTGAGCTAGCTAAAGGTTT 60.369 47.826 31.11 7.12 33.83 3.27
672 3215 3.935828 GTCCTGAGCTAGCTAAAGGTTTG 59.064 47.826 31.11 15.64 33.83 2.93
673 3216 3.838317 TCCTGAGCTAGCTAAAGGTTTGA 59.162 43.478 31.11 17.90 33.83 2.69
674 3217 4.081420 TCCTGAGCTAGCTAAAGGTTTGAG 60.081 45.833 31.11 14.85 33.83 3.02
675 3218 4.081420 CCTGAGCTAGCTAAAGGTTTGAGA 60.081 45.833 27.27 0.84 0.00 3.27
676 3219 4.822026 TGAGCTAGCTAAAGGTTTGAGAC 58.178 43.478 19.38 0.34 0.00 3.36
677 3220 4.283467 TGAGCTAGCTAAAGGTTTGAGACA 59.717 41.667 19.38 3.34 0.00 3.41
678 3221 5.221641 TGAGCTAGCTAAAGGTTTGAGACAA 60.222 40.000 19.38 0.00 0.00 3.18
679 3222 5.621193 AGCTAGCTAAAGGTTTGAGACAAA 58.379 37.500 17.69 0.00 0.00 2.83
680 3223 5.470437 AGCTAGCTAAAGGTTTGAGACAAAC 59.530 40.000 17.69 15.97 0.00 2.93
688 3231 4.307443 GGTTTGAGACAAACCAAAGAGG 57.693 45.455 29.49 0.00 46.74 3.69
741 3284 3.491104 CGTATTCCTGTCCTTCACTAGGC 60.491 52.174 0.00 0.00 44.37 3.93
788 3331 3.462678 GAGAGGTGCGACCCCCTC 61.463 72.222 0.00 0.00 46.34 4.30
942 3493 5.420725 TTGCTAGCTTCCTTCATTAGACA 57.579 39.130 17.23 0.00 0.00 3.41
946 3497 4.899352 AGCTTCCTTCATTAGACACACT 57.101 40.909 0.00 0.00 0.00 3.55
976 3527 1.134753 CTAGCTCACTCTCACCAGCAG 59.865 57.143 0.00 0.00 34.08 4.24
983 3534 2.164624 CACTCTCACCAGCAGTACCTAC 59.835 54.545 0.00 0.00 0.00 3.18
984 3535 2.041891 ACTCTCACCAGCAGTACCTACT 59.958 50.000 0.00 0.00 36.90 2.57
985 3536 3.266254 ACTCTCACCAGCAGTACCTACTA 59.734 47.826 0.00 0.00 34.13 1.82
986 3537 3.880490 CTCTCACCAGCAGTACCTACTAG 59.120 52.174 0.00 0.00 34.13 2.57
987 3538 2.359531 CTCACCAGCAGTACCTACTAGC 59.640 54.545 0.00 0.00 34.13 3.42
1168 3724 2.266055 GCCCACCTCCTTCGTCAG 59.734 66.667 0.00 0.00 0.00 3.51
1169 3725 2.982130 CCCACCTCCTTCGTCAGG 59.018 66.667 0.00 0.00 45.64 3.86
1170 3726 2.266055 CCACCTCCTTCGTCAGGC 59.734 66.667 0.00 0.00 43.55 4.85
1171 3727 2.125912 CACCTCCTTCGTCAGGCG 60.126 66.667 0.00 0.00 43.55 5.52
1173 3729 4.821589 CCTCCTTCGTCAGGCGGC 62.822 72.222 0.00 0.00 40.90 6.53
1449 4008 2.109126 GGGCTTCCAGTGCGCTTAG 61.109 63.158 9.73 0.00 39.74 2.18
1460 4019 3.926527 CAGTGCGCTTAGTTCATCAGTTA 59.073 43.478 9.73 0.00 0.00 2.24
1461 4020 3.927142 AGTGCGCTTAGTTCATCAGTTAC 59.073 43.478 9.73 0.00 0.00 2.50
1462 4021 3.678072 GTGCGCTTAGTTCATCAGTTACA 59.322 43.478 9.73 0.00 0.00 2.41
1463 4022 3.678072 TGCGCTTAGTTCATCAGTTACAC 59.322 43.478 9.73 0.00 0.00 2.90
1464 4023 3.927142 GCGCTTAGTTCATCAGTTACACT 59.073 43.478 0.00 0.00 0.00 3.55
1465 4024 4.031878 GCGCTTAGTTCATCAGTTACACTC 59.968 45.833 0.00 0.00 0.00 3.51
1466 4025 4.563184 CGCTTAGTTCATCAGTTACACTCC 59.437 45.833 0.00 0.00 0.00 3.85
1467 4026 5.479306 GCTTAGTTCATCAGTTACACTCCA 58.521 41.667 0.00 0.00 0.00 3.86
1468 4027 5.578727 GCTTAGTTCATCAGTTACACTCCAG 59.421 44.000 0.00 0.00 0.00 3.86
1469 4028 3.931578 AGTTCATCAGTTACACTCCAGC 58.068 45.455 0.00 0.00 0.00 4.85
1470 4029 3.324846 AGTTCATCAGTTACACTCCAGCA 59.675 43.478 0.00 0.00 0.00 4.41
1513 4072 4.699626 TGCATCGTCAGTGCATGT 57.300 50.000 0.00 0.00 46.76 3.21
1590 4153 3.900941 TCGGTCGGTTGTTAAGTAGTTC 58.099 45.455 0.00 0.00 0.00 3.01
1620 4183 5.171337 GCGTGTGTTAATTTATATGCACTGC 59.829 40.000 0.00 0.00 0.00 4.40
1626 4189 6.756074 TGTTAATTTATATGCACTGCTTTGGC 59.244 34.615 1.98 0.00 39.26 4.52
1641 4204 4.105486 GCTTTGGCGAGATTAATTTGTCC 58.895 43.478 0.00 0.00 0.00 4.02
1669 4235 6.599356 TTGGCTGTGTACTACAAGAGATAA 57.401 37.500 0.00 0.00 39.20 1.75
1681 4247 6.929606 ACTACAAGAGATAAATACGATTGGGC 59.070 38.462 0.00 0.00 0.00 5.36
1683 4249 3.326747 AGAGATAAATACGATTGGGCGC 58.673 45.455 0.00 0.00 33.86 6.53
1712 4278 3.664025 GCGTGTGCTTGAACAGTAATTTC 59.336 43.478 0.00 0.00 38.39 2.17
1735 4301 9.838975 TTTCATTAAGCATGTGTAATACTTGTG 57.161 29.630 0.00 0.00 36.94 3.33
1736 4302 8.560355 TCATTAAGCATGTGTAATACTTGTGT 57.440 30.769 0.00 0.00 36.94 3.72
1795 4364 1.873698 TTCGTACCTTGCTCGCTTTT 58.126 45.000 0.00 0.00 0.00 2.27
1802 4371 5.447279 CGTACCTTGCTCGCTTTTTCATAAT 60.447 40.000 0.00 0.00 0.00 1.28
1803 4372 4.986622 ACCTTGCTCGCTTTTTCATAATC 58.013 39.130 0.00 0.00 0.00 1.75
1804 4373 4.142381 ACCTTGCTCGCTTTTTCATAATCC 60.142 41.667 0.00 0.00 0.00 3.01
1805 4374 4.142403 CCTTGCTCGCTTTTTCATAATCCA 60.142 41.667 0.00 0.00 0.00 3.41
1806 4375 5.450965 CCTTGCTCGCTTTTTCATAATCCAT 60.451 40.000 0.00 0.00 0.00 3.41
1807 4376 4.923893 TGCTCGCTTTTTCATAATCCATG 58.076 39.130 0.00 0.00 35.81 3.66
1808 4377 3.732721 GCTCGCTTTTTCATAATCCATGC 59.267 43.478 0.00 0.00 34.35 4.06
1809 4378 3.951306 TCGCTTTTTCATAATCCATGCG 58.049 40.909 0.00 0.00 41.82 4.73
1811 4380 3.483196 CGCTTTTTCATAATCCATGCGTG 59.517 43.478 0.00 0.00 36.78 5.34
1812 4381 4.423732 GCTTTTTCATAATCCATGCGTGT 58.576 39.130 4.96 0.00 34.35 4.49
1813 4382 5.577835 GCTTTTTCATAATCCATGCGTGTA 58.422 37.500 4.96 0.00 34.35 2.90
1814 4383 5.455525 GCTTTTTCATAATCCATGCGTGTAC 59.544 40.000 4.96 0.00 34.35 2.90
1815 4384 6.677920 GCTTTTTCATAATCCATGCGTGTACT 60.678 38.462 4.96 0.00 34.35 2.73
1816 4385 6.751514 TTTTCATAATCCATGCGTGTACTT 57.248 33.333 4.96 0.00 34.35 2.24
1817 4386 6.751514 TTTCATAATCCATGCGTGTACTTT 57.248 33.333 4.96 0.00 34.35 2.66
1819 4388 6.838198 TCATAATCCATGCGTGTACTTTAC 57.162 37.500 4.96 0.00 34.35 2.01
1822 4391 8.198778 TCATAATCCATGCGTGTACTTTACTTA 58.801 33.333 4.96 0.00 34.35 2.24
1823 4392 6.903883 AATCCATGCGTGTACTTTACTTAG 57.096 37.500 4.96 0.00 0.00 2.18
1824 4393 5.395682 TCCATGCGTGTACTTTACTTAGT 57.604 39.130 4.96 0.00 0.00 2.24
1826 4395 6.324819 TCCATGCGTGTACTTTACTTAGTAC 58.675 40.000 4.96 6.92 46.85 2.73
1832 4430 9.383519 TGCGTGTACTTTACTTAGTACTACTAT 57.616 33.333 0.91 0.00 46.81 2.12
1858 4456 8.579682 AACACAAGCTAATTTCATTTCTTGTC 57.420 30.769 11.03 0.00 40.02 3.18
1860 4458 9.066892 ACACAAGCTAATTTCATTTCTTGTCTA 57.933 29.630 11.03 0.00 40.02 2.59
1873 4471 8.849168 TCATTTCTTGTCTAAATTTGAAGCTGA 58.151 29.630 0.00 0.33 0.00 4.26
1886 4484 7.951530 ATTTGAAGCTGATTTCATCGTTTTT 57.048 28.000 0.00 0.00 36.97 1.94
1915 4514 5.477984 ACAATACAATGAGCTTGGTTGATGT 59.522 36.000 11.95 10.43 39.30 3.06
1925 4524 4.396166 AGCTTGGTTGATGTAAGTGTATGC 59.604 41.667 0.00 0.00 0.00 3.14
1926 4525 4.155826 GCTTGGTTGATGTAAGTGTATGCA 59.844 41.667 0.00 0.00 0.00 3.96
1947 4546 2.164219 ACATTGCGATGTTGAATGGTCC 59.836 45.455 14.16 0.00 43.92 4.46
1952 4551 1.679944 CGATGTTGAATGGTCCTGGCT 60.680 52.381 0.00 0.00 0.00 4.75
1953 4552 2.450476 GATGTTGAATGGTCCTGGCTT 58.550 47.619 0.00 0.00 0.00 4.35
1960 4559 1.595311 ATGGTCCTGGCTTATGTCCA 58.405 50.000 0.00 0.00 0.00 4.02
1961 4560 1.367346 TGGTCCTGGCTTATGTCCAA 58.633 50.000 0.00 0.00 32.41 3.53
1962 4561 1.004277 TGGTCCTGGCTTATGTCCAAC 59.996 52.381 0.00 0.00 32.41 3.77
1964 4563 2.554344 GGTCCTGGCTTATGTCCAACAA 60.554 50.000 0.00 0.00 32.41 2.83
1967 4566 4.220602 GTCCTGGCTTATGTCCAACAAAAT 59.779 41.667 0.00 0.00 32.41 1.82
1980 4579 7.757526 TGTCCAACAAAATATAGTGTATGTGC 58.242 34.615 0.00 0.00 0.00 4.57
1985 4584 9.920826 CAACAAAATATAGTGTATGTGCAGTAG 57.079 33.333 0.00 0.00 0.00 2.57
1996 4595 3.026707 TGTGCAGTAGGGTATCAGCTA 57.973 47.619 0.00 0.00 0.00 3.32
1997 4596 2.959030 TGTGCAGTAGGGTATCAGCTAG 59.041 50.000 0.00 0.00 0.00 3.42
1998 4597 2.959707 GTGCAGTAGGGTATCAGCTAGT 59.040 50.000 0.00 0.00 0.00 2.57
1999 4598 4.142790 GTGCAGTAGGGTATCAGCTAGTA 58.857 47.826 0.00 0.00 0.00 1.82
2000 4599 4.767928 GTGCAGTAGGGTATCAGCTAGTAT 59.232 45.833 0.00 0.00 0.00 2.12
2001 4600 4.767409 TGCAGTAGGGTATCAGCTAGTATG 59.233 45.833 0.00 0.00 0.00 2.39
2002 4601 4.767928 GCAGTAGGGTATCAGCTAGTATGT 59.232 45.833 0.00 0.00 0.00 2.29
2003 4602 5.944599 GCAGTAGGGTATCAGCTAGTATGTA 59.055 44.000 0.00 0.00 0.00 2.29
2004 4603 6.094325 GCAGTAGGGTATCAGCTAGTATGTAG 59.906 46.154 0.00 0.00 0.00 2.74
2005 4604 6.094325 CAGTAGGGTATCAGCTAGTATGTAGC 59.906 46.154 0.00 1.53 40.67 3.58
2006 4605 4.345854 AGGGTATCAGCTAGTATGTAGCC 58.654 47.826 5.52 13.53 41.25 3.93
2007 4606 4.087182 GGGTATCAGCTAGTATGTAGCCA 58.913 47.826 5.52 0.00 41.25 4.75
2008 4607 4.712337 GGGTATCAGCTAGTATGTAGCCAT 59.288 45.833 5.52 2.29 41.25 4.40
2009 4608 5.394663 GGGTATCAGCTAGTATGTAGCCATG 60.395 48.000 5.52 0.00 41.25 3.66
2010 4609 3.667497 TCAGCTAGTATGTAGCCATGC 57.333 47.619 5.52 0.00 41.25 4.06
2011 4610 2.965147 TCAGCTAGTATGTAGCCATGCA 59.035 45.455 0.00 0.00 41.25 3.96
2012 4611 3.387699 TCAGCTAGTATGTAGCCATGCAA 59.612 43.478 0.00 0.00 41.25 4.08
2013 4612 3.744942 CAGCTAGTATGTAGCCATGCAAG 59.255 47.826 0.00 0.00 41.25 4.01
2014 4613 3.389329 AGCTAGTATGTAGCCATGCAAGT 59.611 43.478 0.00 0.00 41.25 3.16
2015 4614 3.496130 GCTAGTATGTAGCCATGCAAGTG 59.504 47.826 0.00 0.00 36.27 3.16
2016 4615 2.292267 AGTATGTAGCCATGCAAGTGC 58.708 47.619 0.00 0.00 36.27 4.40
2017 4616 1.334869 GTATGTAGCCATGCAAGTGCC 59.665 52.381 0.00 0.00 41.18 5.01
2018 4617 0.323633 ATGTAGCCATGCAAGTGCCA 60.324 50.000 0.00 0.00 41.18 4.92
2019 4618 0.539207 TGTAGCCATGCAAGTGCCAA 60.539 50.000 0.00 0.00 41.18 4.52
2020 4619 0.171903 GTAGCCATGCAAGTGCCAAG 59.828 55.000 0.00 0.00 41.18 3.61
2021 4620 0.966875 TAGCCATGCAAGTGCCAAGG 60.967 55.000 0.00 1.39 41.18 3.61
2022 4621 2.576832 GCCATGCAAGTGCCAAGGT 61.577 57.895 0.00 0.00 41.18 3.50
2023 4622 1.290955 CCATGCAAGTGCCAAGGTG 59.709 57.895 0.00 0.00 41.18 4.00
2024 4623 1.466025 CCATGCAAGTGCCAAGGTGT 61.466 55.000 0.00 0.00 41.18 4.16
2025 4624 0.319211 CATGCAAGTGCCAAGGTGTG 60.319 55.000 0.00 0.00 41.18 3.82
2026 4625 0.467844 ATGCAAGTGCCAAGGTGTGA 60.468 50.000 0.00 0.00 41.18 3.58
2027 4626 0.467844 TGCAAGTGCCAAGGTGTGAT 60.468 50.000 0.00 0.00 41.18 3.06
2028 4627 0.675633 GCAAGTGCCAAGGTGTGATT 59.324 50.000 0.00 0.00 34.31 2.57
2029 4628 1.336240 GCAAGTGCCAAGGTGTGATTC 60.336 52.381 0.00 0.00 34.31 2.52
2030 4629 1.270550 CAAGTGCCAAGGTGTGATTCC 59.729 52.381 0.00 0.00 0.00 3.01
2031 4630 0.606401 AGTGCCAAGGTGTGATTCCG 60.606 55.000 0.00 0.00 0.00 4.30
2032 4631 1.971167 TGCCAAGGTGTGATTCCGC 60.971 57.895 0.00 0.00 0.00 5.54
2033 4632 3.039202 GCCAAGGTGTGATTCCGCG 62.039 63.158 0.00 0.00 0.00 6.46
2034 4633 2.398554 CCAAGGTGTGATTCCGCGG 61.399 63.158 22.12 22.12 0.00 6.46
2035 4634 1.671054 CAAGGTGTGATTCCGCGGT 60.671 57.895 27.15 6.47 0.00 5.68
2036 4635 1.072505 AAGGTGTGATTCCGCGGTT 59.927 52.632 27.15 14.52 0.00 4.44
2037 4636 0.536460 AAGGTGTGATTCCGCGGTTT 60.536 50.000 27.15 14.10 0.00 3.27
2038 4637 0.536460 AGGTGTGATTCCGCGGTTTT 60.536 50.000 27.15 11.21 0.00 2.43
2039 4638 0.312729 GGTGTGATTCCGCGGTTTTT 59.687 50.000 27.15 8.38 0.00 1.94
2101 4700 9.859427 GAAATAGTCATGATTCATTGTTTTCCA 57.141 29.630 0.00 0.00 0.00 3.53
2103 4702 9.811995 AATAGTCATGATTCATTGTTTTCCATG 57.188 29.630 0.00 0.00 33.32 3.66
2104 4703 6.636705 AGTCATGATTCATTGTTTTCCATGG 58.363 36.000 4.97 4.97 33.00 3.66
2105 4704 6.438108 AGTCATGATTCATTGTTTTCCATGGA 59.562 34.615 11.44 11.44 33.00 3.41
2106 4705 7.038870 AGTCATGATTCATTGTTTTCCATGGAA 60.039 33.333 23.63 23.63 33.00 3.53
2107 4706 7.603404 GTCATGATTCATTGTTTTCCATGGAAA 59.397 33.333 31.75 31.75 41.69 3.13
2108 4707 7.820386 TCATGATTCATTGTTTTCCATGGAAAG 59.180 33.333 32.77 23.31 43.75 2.62
2109 4708 5.933463 TGATTCATTGTTTTCCATGGAAAGC 59.067 36.000 34.75 34.75 43.75 3.51
2114 4713 4.524316 TGTTTTCCATGGAAAGCAGATG 57.476 40.909 38.11 2.59 45.55 2.90
2115 4714 3.258872 TGTTTTCCATGGAAAGCAGATGG 59.741 43.478 38.11 3.49 45.55 3.51
2116 4715 2.148446 TTCCATGGAAAGCAGATGGG 57.852 50.000 25.13 0.00 37.77 4.00
2117 4716 0.259647 TCCATGGAAAGCAGATGGGG 59.740 55.000 13.46 0.00 37.77 4.96
2118 4717 0.032813 CCATGGAAAGCAGATGGGGT 60.033 55.000 5.56 0.00 34.14 4.95
2119 4718 1.215173 CCATGGAAAGCAGATGGGGTA 59.785 52.381 5.56 0.00 34.14 3.69
2120 4719 2.579873 CATGGAAAGCAGATGGGGTAG 58.420 52.381 0.00 0.00 0.00 3.18
2121 4720 0.255890 TGGAAAGCAGATGGGGTAGC 59.744 55.000 0.00 0.00 0.00 3.58
2130 4729 3.239449 CAGATGGGGTAGCAGTATACCA 58.761 50.000 0.00 0.00 46.04 3.25
2250 8027 4.864334 CCGAGCCCAGCCCATCAC 62.864 72.222 0.00 0.00 0.00 3.06
2259 8036 1.678728 CCAGCCCATCACGCTAAAAGA 60.679 52.381 0.00 0.00 33.91 2.52
2265 8042 1.320555 CATCACGCTAAAAGACCGTCG 59.679 52.381 0.00 0.00 32.18 5.12
2271 8048 0.036671 CTAAAAGACCGTCGGGCCTT 60.037 55.000 15.27 14.09 36.48 4.35
2272 8049 0.320946 TAAAAGACCGTCGGGCCTTG 60.321 55.000 15.27 0.00 36.48 3.61
2299 10442 1.301954 GCCGGGCCTCTTCCTTAAA 59.698 57.895 8.12 0.00 0.00 1.52
2300 10443 0.106669 GCCGGGCCTCTTCCTTAAAT 60.107 55.000 8.12 0.00 0.00 1.40
2301 10444 1.680338 CCGGGCCTCTTCCTTAAATG 58.320 55.000 0.84 0.00 0.00 2.32
2307 10450 4.086457 GGCCTCTTCCTTAAATGGTGAAA 58.914 43.478 0.00 0.00 0.00 2.69
2309 10452 5.470368 GCCTCTTCCTTAAATGGTGAAAAC 58.530 41.667 0.00 0.00 0.00 2.43
2318 10461 2.281276 GGTGAAAACGACGGGCCT 60.281 61.111 0.84 0.00 0.00 5.19
2320 10463 2.281208 TGAAAACGACGGGCCTGG 60.281 61.111 18.00 4.46 0.00 4.45
2362 10505 0.819666 GGCTCAAAATCTAGGCCCGG 60.820 60.000 0.00 0.00 37.12 5.73
2363 10506 0.819666 GCTCAAAATCTAGGCCCGGG 60.820 60.000 19.09 19.09 0.00 5.73
2364 10507 0.819666 CTCAAAATCTAGGCCCGGGC 60.820 60.000 38.57 38.57 41.06 6.13
2402 10545 3.805928 CCTGTGGGCACTGGTAGA 58.194 61.111 0.00 0.00 43.06 2.59
2403 10546 2.066340 CCTGTGGGCACTGGTAGAA 58.934 57.895 0.00 0.00 43.06 2.10
2404 10547 0.400213 CCTGTGGGCACTGGTAGAAA 59.600 55.000 0.00 0.00 43.06 2.52
2405 10548 1.202879 CCTGTGGGCACTGGTAGAAAA 60.203 52.381 0.00 0.00 43.06 2.29
2406 10549 2.582052 CTGTGGGCACTGGTAGAAAAA 58.418 47.619 0.00 0.00 0.00 1.94
2407 10550 2.554032 CTGTGGGCACTGGTAGAAAAAG 59.446 50.000 0.00 0.00 0.00 2.27
2408 10551 2.173782 TGTGGGCACTGGTAGAAAAAGA 59.826 45.455 0.00 0.00 0.00 2.52
2409 10552 2.814336 GTGGGCACTGGTAGAAAAAGAG 59.186 50.000 0.00 0.00 0.00 2.85
2410 10553 2.224769 TGGGCACTGGTAGAAAAAGAGG 60.225 50.000 0.00 0.00 0.00 3.69
2411 10554 1.813178 GGCACTGGTAGAAAAAGAGGC 59.187 52.381 0.00 0.00 0.00 4.70
2412 10555 2.553247 GGCACTGGTAGAAAAAGAGGCT 60.553 50.000 0.00 0.00 0.00 4.58
2413 10556 3.149981 GCACTGGTAGAAAAAGAGGCTT 58.850 45.455 0.00 0.00 0.00 4.35
2414 10557 3.189495 GCACTGGTAGAAAAAGAGGCTTC 59.811 47.826 0.00 0.00 0.00 3.86
2415 10558 3.753797 CACTGGTAGAAAAAGAGGCTTCC 59.246 47.826 0.00 0.00 0.00 3.46
2416 10559 3.003480 CTGGTAGAAAAAGAGGCTTCCG 58.997 50.000 0.00 0.00 0.00 4.30
2417 10560 2.370849 TGGTAGAAAAAGAGGCTTCCGT 59.629 45.455 0.00 0.00 0.00 4.69
2418 10561 3.001414 GGTAGAAAAAGAGGCTTCCGTC 58.999 50.000 0.00 0.00 0.00 4.79
2419 10562 2.186532 AGAAAAAGAGGCTTCCGTCC 57.813 50.000 0.00 0.00 0.00 4.79
2420 10563 1.420138 AGAAAAAGAGGCTTCCGTCCA 59.580 47.619 0.00 0.00 0.00 4.02
2421 10564 1.807142 GAAAAAGAGGCTTCCGTCCAG 59.193 52.381 0.00 0.00 0.00 3.86
2422 10565 0.606673 AAAAGAGGCTTCCGTCCAGC 60.607 55.000 0.00 0.00 36.45 4.85
2427 10570 4.115199 GCTTCCGTCCAGCCCCAT 62.115 66.667 0.00 0.00 0.00 4.00
2428 10571 2.677228 CTTCCGTCCAGCCCCATT 59.323 61.111 0.00 0.00 0.00 3.16
2429 10572 1.912220 CTTCCGTCCAGCCCCATTA 59.088 57.895 0.00 0.00 0.00 1.90
2430 10573 0.179045 CTTCCGTCCAGCCCCATTAG 60.179 60.000 0.00 0.00 0.00 1.73
2431 10574 0.912487 TTCCGTCCAGCCCCATTAGT 60.912 55.000 0.00 0.00 0.00 2.24
2432 10575 1.146263 CCGTCCAGCCCCATTAGTC 59.854 63.158 0.00 0.00 0.00 2.59
2433 10576 1.227263 CGTCCAGCCCCATTAGTCG 60.227 63.158 0.00 0.00 0.00 4.18
2434 10577 1.523938 GTCCAGCCCCATTAGTCGC 60.524 63.158 0.00 0.00 0.00 5.19
2435 10578 2.588877 CCAGCCCCATTAGTCGCG 60.589 66.667 0.00 0.00 0.00 5.87
2436 10579 2.499205 CAGCCCCATTAGTCGCGA 59.501 61.111 3.71 3.71 0.00 5.87
2437 10580 1.153449 CAGCCCCATTAGTCGCGAA 60.153 57.895 12.06 0.00 0.00 4.70
2438 10581 0.742990 CAGCCCCATTAGTCGCGAAA 60.743 55.000 12.06 2.07 0.00 3.46
2439 10582 0.743345 AGCCCCATTAGTCGCGAAAC 60.743 55.000 12.06 0.00 0.00 2.78
2440 10583 0.743345 GCCCCATTAGTCGCGAAACT 60.743 55.000 12.06 8.26 0.00 2.66
2441 10584 1.006832 CCCCATTAGTCGCGAAACTG 58.993 55.000 12.06 6.74 0.00 3.16
2442 10585 1.674817 CCCCATTAGTCGCGAAACTGT 60.675 52.381 12.06 0.00 0.00 3.55
2443 10586 2.417651 CCCCATTAGTCGCGAAACTGTA 60.418 50.000 12.06 0.00 0.00 2.74
2444 10587 2.858344 CCCATTAGTCGCGAAACTGTAG 59.142 50.000 12.06 0.00 0.00 2.74
2445 10588 2.858344 CCATTAGTCGCGAAACTGTAGG 59.142 50.000 12.06 3.43 0.00 3.18
2446 10589 3.428452 CCATTAGTCGCGAAACTGTAGGA 60.428 47.826 12.06 0.00 0.00 2.94
2447 10590 3.921119 TTAGTCGCGAAACTGTAGGAA 57.079 42.857 12.06 0.00 0.00 3.36
2448 10591 2.061740 AGTCGCGAAACTGTAGGAAC 57.938 50.000 12.06 0.00 0.00 3.62
2449 10592 1.066136 GTCGCGAAACTGTAGGAACC 58.934 55.000 12.06 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.299547 ACTTGCGTCGCAGCCTCA 62.300 61.111 20.65 4.04 40.61 3.86
99 100 1.503294 TTTGTAAGCACACGCATCGA 58.497 45.000 0.00 0.00 42.27 3.59
102 103 3.112580 GTGTTTTTGTAAGCACACGCAT 58.887 40.909 0.00 0.00 42.84 4.73
112 113 3.940221 ACCAGCTGTACGTGTTTTTGTAA 59.060 39.130 13.81 0.00 0.00 2.41
156 157 1.004277 AGCTACAAAGGGCCAAATCGA 59.996 47.619 6.18 0.00 0.00 3.59
203 204 2.409399 CTAGTCAGCTAGCTGCCGA 58.591 57.895 35.21 22.40 43.31 5.54
307 313 3.177883 GCTAAGCAGAGCTCGCTAG 57.822 57.895 25.85 22.20 38.25 3.42
317 323 2.001361 GCATGTGCCCAGCTAAGCAG 62.001 60.000 9.95 1.06 40.28 4.24
318 324 2.048023 GCATGTGCCCAGCTAAGCA 61.048 57.895 5.76 5.76 36.44 3.91
319 325 1.389609 ATGCATGTGCCCAGCTAAGC 61.390 55.000 0.00 0.21 41.18 3.09
320 326 0.384309 CATGCATGTGCCCAGCTAAG 59.616 55.000 18.91 0.00 41.18 2.18
321 327 1.669049 GCATGCATGTGCCCAGCTAA 61.669 55.000 26.79 0.00 41.18 3.09
322 328 2.122797 GCATGCATGTGCCCAGCTA 61.123 57.895 26.79 0.00 41.18 3.32
349 355 3.009723 GTGATAATGCATACCCGGATGG 58.990 50.000 0.73 0.00 41.37 3.51
350 356 3.935203 GAGTGATAATGCATACCCGGATG 59.065 47.826 0.73 0.00 0.00 3.51
351 357 3.840666 AGAGTGATAATGCATACCCGGAT 59.159 43.478 0.73 0.00 0.00 4.18
352 358 3.006859 CAGAGTGATAATGCATACCCGGA 59.993 47.826 0.73 0.00 0.00 5.14
353 359 3.006859 TCAGAGTGATAATGCATACCCGG 59.993 47.826 0.00 0.00 0.00 5.73
354 360 3.990469 GTCAGAGTGATAATGCATACCCG 59.010 47.826 0.00 0.00 0.00 5.28
356 362 5.866633 GCTAGTCAGAGTGATAATGCATACC 59.133 44.000 0.00 0.00 0.00 2.73
357 363 6.686630 AGCTAGTCAGAGTGATAATGCATAC 58.313 40.000 0.00 0.00 0.00 2.39
358 364 6.907853 AGCTAGTCAGAGTGATAATGCATA 57.092 37.500 0.00 0.00 0.00 3.14
359 365 5.804944 AGCTAGTCAGAGTGATAATGCAT 57.195 39.130 0.00 0.00 0.00 3.96
360 366 5.604758 AAGCTAGTCAGAGTGATAATGCA 57.395 39.130 0.00 0.00 0.00 3.96
361 367 7.869937 TGATTAAGCTAGTCAGAGTGATAATGC 59.130 37.037 0.00 0.00 0.00 3.56
362 368 9.409312 CTGATTAAGCTAGTCAGAGTGATAATG 57.591 37.037 14.47 0.00 42.98 1.90
363 369 8.584157 CCTGATTAAGCTAGTCAGAGTGATAAT 58.416 37.037 19.05 2.44 42.98 1.28
364 370 7.014711 CCCTGATTAAGCTAGTCAGAGTGATAA 59.985 40.741 19.05 0.00 42.98 1.75
366 372 5.304101 CCCTGATTAAGCTAGTCAGAGTGAT 59.696 44.000 19.05 0.00 42.98 3.06
367 373 4.646945 CCCTGATTAAGCTAGTCAGAGTGA 59.353 45.833 19.05 0.00 42.98 3.41
376 467 3.624861 CAGCAACACCCTGATTAAGCTAG 59.375 47.826 0.00 0.00 32.03 3.42
394 485 0.036952 GAGCTTACCAGAGTGCAGCA 60.037 55.000 0.00 0.00 36.52 4.41
396 487 1.001293 TGTGAGCTTACCAGAGTGCAG 59.999 52.381 6.13 0.00 0.00 4.41
406 497 0.926846 GCGCAGAGATGTGAGCTTAC 59.073 55.000 0.30 0.78 39.86 2.34
413 504 1.010935 AGTTGACGCGCAGAGATGTG 61.011 55.000 5.73 0.00 0.00 3.21
416 507 0.319900 AACAGTTGACGCGCAGAGAT 60.320 50.000 5.73 0.00 0.00 2.75
419 510 1.790755 ATTAACAGTTGACGCGCAGA 58.209 45.000 5.73 0.00 0.00 4.26
421 512 2.405172 TGTATTAACAGTTGACGCGCA 58.595 42.857 5.73 1.71 0.00 6.09
422 513 3.651562 ATGTATTAACAGTTGACGCGC 57.348 42.857 5.73 0.00 39.49 6.86
423 514 7.474332 GCATATTATGTATTAACAGTTGACGCG 59.526 37.037 3.53 3.53 39.49 6.01
454 2503 5.123502 GCTCAGATGGAATTAGGCACATATG 59.876 44.000 0.00 0.00 34.75 1.78
456 2505 4.645535 GCTCAGATGGAATTAGGCACATA 58.354 43.478 0.00 0.00 0.00 2.29
457 2506 3.484407 GCTCAGATGGAATTAGGCACAT 58.516 45.455 0.00 0.00 0.00 3.21
458 2507 2.742856 CGCTCAGATGGAATTAGGCACA 60.743 50.000 0.00 0.00 0.00 4.57
459 2508 1.869767 CGCTCAGATGGAATTAGGCAC 59.130 52.381 0.00 0.00 0.00 5.01
461 2510 2.139118 GTCGCTCAGATGGAATTAGGC 58.861 52.381 0.00 0.00 0.00 3.93
466 2515 3.340814 AAGTTGTCGCTCAGATGGAAT 57.659 42.857 0.00 0.00 0.00 3.01
469 2518 3.557595 GGAATAAGTTGTCGCTCAGATGG 59.442 47.826 0.00 0.00 0.00 3.51
470 2519 3.243877 CGGAATAAGTTGTCGCTCAGATG 59.756 47.826 0.00 0.00 0.00 2.90
471 2520 3.448686 CGGAATAAGTTGTCGCTCAGAT 58.551 45.455 0.00 0.00 0.00 2.90
475 2524 1.925185 GTCCGGAATAAGTTGTCGCTC 59.075 52.381 5.23 0.00 0.00 5.03
477 2526 0.643820 CGTCCGGAATAAGTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
482 2834 1.856629 TCCTCCGTCCGGAATAAGTT 58.143 50.000 5.23 0.00 44.66 2.66
484 2836 1.755380 ACTTCCTCCGTCCGGAATAAG 59.245 52.381 5.23 19.98 44.66 1.73
486 2838 2.734755 TACTTCCTCCGTCCGGAATA 57.265 50.000 5.23 0.00 44.66 1.75
490 2842 1.067582 GCATACTTCCTCCGTCCGG 59.932 63.158 0.00 0.00 0.00 5.14
491 2843 0.249073 CAGCATACTTCCTCCGTCCG 60.249 60.000 0.00 0.00 0.00 4.79
493 2845 2.674796 AACAGCATACTTCCTCCGTC 57.325 50.000 0.00 0.00 0.00 4.79
519 2922 4.065088 GGTTGTCATGAAGTCTAAGCACA 58.935 43.478 0.00 0.00 0.00 4.57
527 3069 4.452455 AGTCATTTCGGTTGTCATGAAGTC 59.548 41.667 0.00 0.00 0.00 3.01
533 3076 4.389374 ACAGAAGTCATTTCGGTTGTCAT 58.611 39.130 0.00 0.00 40.63 3.06
542 3085 7.024171 GCTAAAGCCTTAACAGAAGTCATTTC 58.976 38.462 0.00 0.00 33.71 2.17
545 3088 5.810095 AGCTAAAGCCTTAACAGAAGTCAT 58.190 37.500 0.00 0.00 43.38 3.06
558 3101 4.910458 TTCTCAAACCTAGCTAAAGCCT 57.090 40.909 0.00 0.00 43.38 4.58
577 3120 3.190874 GTGTCCGTCCAGAGATTGATTC 58.809 50.000 0.00 0.00 0.00 2.52
578 3121 2.093447 GGTGTCCGTCCAGAGATTGATT 60.093 50.000 0.00 0.00 0.00 2.57
579 3122 1.482593 GGTGTCCGTCCAGAGATTGAT 59.517 52.381 0.00 0.00 0.00 2.57
580 3123 0.895530 GGTGTCCGTCCAGAGATTGA 59.104 55.000 0.00 0.00 0.00 2.57
581 3124 0.608130 TGGTGTCCGTCCAGAGATTG 59.392 55.000 0.00 0.00 0.00 2.67
582 3125 1.482593 GATGGTGTCCGTCCAGAGATT 59.517 52.381 0.00 0.00 38.42 2.40
583 3126 1.115467 GATGGTGTCCGTCCAGAGAT 58.885 55.000 0.00 0.00 38.42 2.75
584 3127 0.251608 TGATGGTGTCCGTCCAGAGA 60.252 55.000 5.68 0.00 38.69 3.10
585 3128 0.826715 ATGATGGTGTCCGTCCAGAG 59.173 55.000 5.68 0.00 38.69 3.35
586 3129 0.536724 CATGATGGTGTCCGTCCAGA 59.463 55.000 5.68 0.00 38.69 3.86
587 3130 1.091771 GCATGATGGTGTCCGTCCAG 61.092 60.000 0.00 0.47 38.69 3.86
588 3131 1.078497 GCATGATGGTGTCCGTCCA 60.078 57.895 0.00 0.00 38.69 4.02
590 3133 0.940126 GATGCATGATGGTGTCCGTC 59.060 55.000 2.46 1.47 39.80 4.79
591 3134 0.811219 CGATGCATGATGGTGTCCGT 60.811 55.000 2.46 0.00 0.00 4.69
592 3135 1.501337 CCGATGCATGATGGTGTCCG 61.501 60.000 2.46 0.00 0.00 4.79
593 3136 1.789078 GCCGATGCATGATGGTGTCC 61.789 60.000 2.46 0.00 37.47 4.02
594 3137 1.650912 GCCGATGCATGATGGTGTC 59.349 57.895 2.46 0.00 37.47 3.67
596 3139 0.879839 TACGCCGATGCATGATGGTG 60.880 55.000 2.46 12.42 37.32 4.17
599 3142 2.995939 AGTAATACGCCGATGCATGATG 59.004 45.455 2.46 0.00 37.32 3.07
600 3143 2.995939 CAGTAATACGCCGATGCATGAT 59.004 45.455 2.46 0.00 37.32 2.45
601 3144 2.403259 CAGTAATACGCCGATGCATGA 58.597 47.619 2.46 0.00 37.32 3.07
604 3147 0.104120 AGCAGTAATACGCCGATGCA 59.896 50.000 0.00 0.00 37.32 3.96
605 3148 0.508641 CAGCAGTAATACGCCGATGC 59.491 55.000 0.00 0.00 0.00 3.91
606 3149 2.134201 TCAGCAGTAATACGCCGATG 57.866 50.000 0.00 0.00 0.00 3.84
607 3150 2.100916 ACTTCAGCAGTAATACGCCGAT 59.899 45.455 0.00 0.00 31.97 4.18
608 3151 1.475280 ACTTCAGCAGTAATACGCCGA 59.525 47.619 0.00 0.00 31.97 5.54
609 3152 1.922570 ACTTCAGCAGTAATACGCCG 58.077 50.000 4.22 0.00 31.97 6.46
610 3153 4.043037 AGTACTTCAGCAGTAATACGCC 57.957 45.455 0.00 0.00 39.86 5.68
612 3155 5.408356 ACCAAGTACTTCAGCAGTAATACG 58.592 41.667 4.77 0.00 39.86 3.06
613 3156 7.318141 TGTACCAAGTACTTCAGCAGTAATAC 58.682 38.462 4.77 0.00 39.86 1.89
615 3158 6.354794 TGTACCAAGTACTTCAGCAGTAAT 57.645 37.500 4.77 0.00 39.86 1.89
617 3160 5.995565 ATGTACCAAGTACTTCAGCAGTA 57.004 39.130 4.77 0.56 39.49 2.74
618 3161 4.891992 ATGTACCAAGTACTTCAGCAGT 57.108 40.909 4.77 1.50 39.49 4.40
619 3162 5.120830 GTCAATGTACCAAGTACTTCAGCAG 59.879 44.000 4.77 0.00 39.49 4.24
621 3164 4.994852 TGTCAATGTACCAAGTACTTCAGC 59.005 41.667 4.77 0.00 39.49 4.26
622 3165 6.455647 TCTGTCAATGTACCAAGTACTTCAG 58.544 40.000 4.77 6.25 39.49 3.02
624 3167 7.220300 CGTATCTGTCAATGTACCAAGTACTTC 59.780 40.741 4.77 0.00 39.49 3.01
625 3168 7.033791 CGTATCTGTCAATGTACCAAGTACTT 58.966 38.462 1.12 1.12 39.49 2.24
628 3171 6.405065 GGACGTATCTGTCAATGTACCAAGTA 60.405 42.308 0.00 0.00 40.72 2.24
629 3172 5.401531 ACGTATCTGTCAATGTACCAAGT 57.598 39.130 0.00 0.00 0.00 3.16
630 3173 4.804139 GGACGTATCTGTCAATGTACCAAG 59.196 45.833 0.00 0.00 40.72 3.61
632 3175 4.021229 AGGACGTATCTGTCAATGTACCA 58.979 43.478 0.00 0.00 40.72 3.25
636 3179 3.429547 GCTCAGGACGTATCTGTCAATGT 60.430 47.826 15.24 0.00 40.72 2.71
637 3180 3.119291 GCTCAGGACGTATCTGTCAATG 58.881 50.000 15.24 6.22 40.72 2.82
638 3181 3.027412 AGCTCAGGACGTATCTGTCAAT 58.973 45.455 15.24 2.12 40.72 2.57
639 3182 2.447443 AGCTCAGGACGTATCTGTCAA 58.553 47.619 15.24 0.09 40.72 3.18
640 3183 2.130272 AGCTCAGGACGTATCTGTCA 57.870 50.000 15.24 0.66 40.72 3.58
641 3184 2.031508 GCTAGCTCAGGACGTATCTGTC 60.032 54.545 7.70 10.09 38.17 3.51
642 3185 1.950909 GCTAGCTCAGGACGTATCTGT 59.049 52.381 7.70 2.93 34.15 3.41
643 3186 2.226330 AGCTAGCTCAGGACGTATCTG 58.774 52.381 12.68 11.00 0.00 2.90
644 3187 2.649531 AGCTAGCTCAGGACGTATCT 57.350 50.000 12.68 0.00 0.00 1.98
645 3188 4.320641 CCTTTAGCTAGCTCAGGACGTATC 60.321 50.000 28.26 0.00 31.55 2.24
646 3189 3.570550 CCTTTAGCTAGCTCAGGACGTAT 59.429 47.826 28.26 4.32 31.55 3.06
647 3190 2.950309 CCTTTAGCTAGCTCAGGACGTA 59.050 50.000 28.26 6.29 31.55 3.57
648 3191 1.751924 CCTTTAGCTAGCTCAGGACGT 59.248 52.381 28.26 5.67 31.55 4.34
649 3192 1.751924 ACCTTTAGCTAGCTCAGGACG 59.248 52.381 34.53 17.90 33.26 4.79
650 3193 3.897141 AACCTTTAGCTAGCTCAGGAC 57.103 47.619 34.53 1.98 33.26 3.85
651 3194 3.838317 TCAAACCTTTAGCTAGCTCAGGA 59.162 43.478 34.53 18.54 33.26 3.86
652 3195 4.081420 TCTCAAACCTTTAGCTAGCTCAGG 60.081 45.833 29.50 29.50 34.47 3.86
653 3196 4.867608 GTCTCAAACCTTTAGCTAGCTCAG 59.132 45.833 23.26 17.90 0.00 3.35
654 3197 4.283467 TGTCTCAAACCTTTAGCTAGCTCA 59.717 41.667 23.26 7.73 0.00 4.26
655 3198 4.822026 TGTCTCAAACCTTTAGCTAGCTC 58.178 43.478 23.26 2.10 0.00 4.09
656 3199 4.891992 TGTCTCAAACCTTTAGCTAGCT 57.108 40.909 23.12 23.12 0.00 3.32
657 3200 5.334957 GGTTTGTCTCAAACCTTTAGCTAGC 60.335 44.000 26.94 6.62 44.71 3.42
658 3201 6.242508 GGTTTGTCTCAAACCTTTAGCTAG 57.757 41.667 26.94 0.00 44.71 3.42
680 3223 4.570772 CGTCCATATGTGTAACCTCTTTGG 59.429 45.833 1.24 0.00 42.93 3.28
681 3224 5.416083 TCGTCCATATGTGTAACCTCTTTG 58.584 41.667 1.24 0.00 34.36 2.77
682 3225 5.670792 TCGTCCATATGTGTAACCTCTTT 57.329 39.130 1.24 0.00 34.36 2.52
683 3226 5.601662 CATCGTCCATATGTGTAACCTCTT 58.398 41.667 1.24 0.00 34.36 2.85
684 3227 4.501571 GCATCGTCCATATGTGTAACCTCT 60.502 45.833 1.24 0.00 34.36 3.69
685 3228 3.741344 GCATCGTCCATATGTGTAACCTC 59.259 47.826 1.24 0.00 34.36 3.85
686 3229 3.728845 GCATCGTCCATATGTGTAACCT 58.271 45.455 1.24 0.00 34.36 3.50
687 3230 2.475111 CGCATCGTCCATATGTGTAACC 59.525 50.000 1.24 0.00 34.36 2.85
688 3231 3.377439 TCGCATCGTCCATATGTGTAAC 58.623 45.455 1.24 0.00 36.46 2.50
689 3232 3.719173 TCGCATCGTCCATATGTGTAA 57.281 42.857 1.24 0.00 36.46 2.41
690 3233 3.005367 ACATCGCATCGTCCATATGTGTA 59.995 43.478 1.24 0.00 36.46 2.90
691 3234 2.224042 ACATCGCATCGTCCATATGTGT 60.224 45.455 1.24 0.00 36.46 3.72
741 3284 1.065418 ACATTAAGAGCCCCGTTGGAG 60.065 52.381 0.00 0.00 35.39 3.86
779 3322 1.221840 CATGTGAAGGAGGGGGTCG 59.778 63.158 0.00 0.00 0.00 4.79
942 3493 3.261137 GTGAGCTAGGAGGGTTTAAGTGT 59.739 47.826 0.00 0.00 0.00 3.55
946 3497 4.024670 GAGAGTGAGCTAGGAGGGTTTAA 58.975 47.826 0.00 0.00 0.00 1.52
976 3527 0.880441 GCCGGCTAGCTAGTAGGTAC 59.120 60.000 26.39 14.33 0.00 3.34
983 3534 1.070445 ATTGCTGCCGGCTAGCTAG 59.930 57.895 34.73 23.80 41.66 3.42
984 3535 1.227645 CATTGCTGCCGGCTAGCTA 60.228 57.895 34.73 30.78 41.66 3.32
985 3536 2.515523 CATTGCTGCCGGCTAGCT 60.516 61.111 34.73 22.04 41.66 3.32
986 3537 3.589881 CCATTGCTGCCGGCTAGC 61.590 66.667 31.45 31.45 42.39 3.42
987 3538 3.589881 GCCATTGCTGCCGGCTAG 61.590 66.667 29.70 22.98 42.78 3.42
1460 4019 0.396435 TGGACGATTTGCTGGAGTGT 59.604 50.000 0.00 0.00 0.00 3.55
1461 4020 1.667724 GATGGACGATTTGCTGGAGTG 59.332 52.381 0.00 0.00 0.00 3.51
1462 4021 1.278985 TGATGGACGATTTGCTGGAGT 59.721 47.619 0.00 0.00 0.00 3.85
1463 4022 1.667724 GTGATGGACGATTTGCTGGAG 59.332 52.381 0.00 0.00 0.00 3.86
1464 4023 1.278985 AGTGATGGACGATTTGCTGGA 59.721 47.619 0.00 0.00 0.00 3.86
1465 4024 1.667724 GAGTGATGGACGATTTGCTGG 59.332 52.381 0.00 0.00 0.00 4.85
1466 4025 2.349590 TGAGTGATGGACGATTTGCTG 58.650 47.619 0.00 0.00 0.00 4.41
1467 4026 2.625737 CTGAGTGATGGACGATTTGCT 58.374 47.619 0.00 0.00 0.00 3.91
1468 4027 1.063174 GCTGAGTGATGGACGATTTGC 59.937 52.381 0.00 0.00 0.00 3.68
1469 4028 1.325640 CGCTGAGTGATGGACGATTTG 59.674 52.381 0.00 0.00 0.00 2.32
1470 4029 1.645034 CGCTGAGTGATGGACGATTT 58.355 50.000 0.00 0.00 0.00 2.17
1590 4153 7.696035 TGCATATAAATTAACACACGCAAGAAG 59.304 33.333 0.00 0.00 43.62 2.85
1620 4183 5.567138 AGGACAAATTAATCTCGCCAAAG 57.433 39.130 0.00 0.00 0.00 2.77
1626 4189 6.316390 AGCCAAACTAGGACAAATTAATCTCG 59.684 38.462 0.00 0.00 0.00 4.04
1641 4204 5.779922 TCTTGTAGTACACAGCCAAACTAG 58.220 41.667 1.43 0.00 38.72 2.57
1669 4235 3.636043 CGCGCGCCCAATCGTATT 61.636 61.111 27.72 0.00 0.00 1.89
1687 4253 1.368019 CTGTTCAAGCACACGCACG 60.368 57.895 0.00 0.00 42.27 5.34
1691 4257 4.843147 TGAAATTACTGTTCAAGCACACG 58.157 39.130 0.00 0.00 32.13 4.49
1693 4259 7.594758 GCTTAATGAAATTACTGTTCAAGCACA 59.405 33.333 0.00 0.00 38.79 4.57
1694 4260 7.594758 TGCTTAATGAAATTACTGTTCAAGCAC 59.405 33.333 7.55 0.00 39.58 4.40
1695 4261 7.656412 TGCTTAATGAAATTACTGTTCAAGCA 58.344 30.769 7.55 7.55 41.01 3.91
1698 4264 9.409312 CACATGCTTAATGAAATTACTGTTCAA 57.591 29.630 0.00 0.00 38.79 2.69
1795 4364 7.045416 AGTAAAGTACACGCATGGATTATGAA 58.955 34.615 0.00 0.00 39.21 2.57
1802 4371 5.395682 ACTAAGTAAAGTACACGCATGGA 57.604 39.130 0.00 0.00 0.00 3.41
1854 4452 9.630098 GATGAAATCAGCTTCAAATTTAGACAA 57.370 29.630 0.00 0.00 44.70 3.18
1858 4456 8.679288 AACGATGAAATCAGCTTCAAATTTAG 57.321 30.769 0.00 0.00 45.97 1.85
1860 4458 7.951530 AAACGATGAAATCAGCTTCAAATTT 57.048 28.000 0.00 0.00 45.97 1.82
1886 4484 4.832266 ACCAAGCTCATTGTATTGTTCCAA 59.168 37.500 0.00 0.00 37.17 3.53
1887 4486 4.406456 ACCAAGCTCATTGTATTGTTCCA 58.594 39.130 0.00 0.00 37.17 3.53
1888 4487 5.048083 TCAACCAAGCTCATTGTATTGTTCC 60.048 40.000 0.00 0.00 37.17 3.62
1894 4493 6.886459 ACTTACATCAACCAAGCTCATTGTAT 59.114 34.615 0.00 0.00 37.17 2.29
1895 4494 6.149308 CACTTACATCAACCAAGCTCATTGTA 59.851 38.462 0.00 0.00 37.17 2.41
1901 4500 5.447818 GCATACACTTACATCAACCAAGCTC 60.448 44.000 0.00 0.00 0.00 4.09
1915 4514 4.394610 AACATCGCAATGTGCATACACTTA 59.605 37.500 0.00 0.00 45.48 2.24
1925 4524 3.173599 GACCATTCAACATCGCAATGTG 58.826 45.455 0.00 0.00 45.48 3.21
1929 4528 1.811965 CAGGACCATTCAACATCGCAA 59.188 47.619 0.00 0.00 0.00 4.85
1932 4531 0.734889 GCCAGGACCATTCAACATCG 59.265 55.000 0.00 0.00 0.00 3.84
1947 4546 8.131100 CACTATATTTTGTTGGACATAAGCCAG 58.869 37.037 0.00 0.00 36.64 4.85
1960 4559 9.109393 CCTACTGCACATACACTATATTTTGTT 57.891 33.333 0.00 0.00 0.00 2.83
1961 4560 7.715249 CCCTACTGCACATACACTATATTTTGT 59.285 37.037 0.00 0.00 0.00 2.83
1962 4561 7.715249 ACCCTACTGCACATACACTATATTTTG 59.285 37.037 0.00 0.00 0.00 2.44
1964 4563 7.374975 ACCCTACTGCACATACACTATATTT 57.625 36.000 0.00 0.00 0.00 1.40
1967 4566 7.235804 TGATACCCTACTGCACATACACTATA 58.764 38.462 0.00 0.00 0.00 1.31
1977 4576 2.959707 ACTAGCTGATACCCTACTGCAC 59.040 50.000 0.00 0.00 34.35 4.57
1980 4579 6.094325 GCTACATACTAGCTGATACCCTACTG 59.906 46.154 0.00 0.00 37.56 2.74
1985 4584 4.087182 TGGCTACATACTAGCTGATACCC 58.913 47.826 0.00 0.00 40.25 3.69
1996 4595 2.292267 GCACTTGCATGGCTACATACT 58.708 47.619 4.44 0.00 41.59 2.12
1997 4596 1.334869 GGCACTTGCATGGCTACATAC 59.665 52.381 6.61 0.00 44.36 2.39
1998 4597 1.064832 TGGCACTTGCATGGCTACATA 60.065 47.619 14.17 0.00 45.16 2.29
1999 4598 0.323633 TGGCACTTGCATGGCTACAT 60.324 50.000 14.17 0.00 45.16 2.29
2000 4599 0.539207 TTGGCACTTGCATGGCTACA 60.539 50.000 14.17 0.92 45.16 2.74
2001 4600 0.171903 CTTGGCACTTGCATGGCTAC 59.828 55.000 14.17 0.00 45.16 3.58
2002 4601 0.966875 CCTTGGCACTTGCATGGCTA 60.967 55.000 14.17 6.62 45.16 3.93
2003 4602 2.280552 CCTTGGCACTTGCATGGCT 61.281 57.895 14.17 0.00 45.16 4.75
2004 4603 2.263540 CCTTGGCACTTGCATGGC 59.736 61.111 6.90 6.90 44.36 4.40
2005 4604 1.290955 CACCTTGGCACTTGCATGG 59.709 57.895 3.15 4.42 44.36 3.66
2006 4605 0.319211 CACACCTTGGCACTTGCATG 60.319 55.000 3.15 0.00 44.36 4.06
2007 4606 0.467844 TCACACCTTGGCACTTGCAT 60.468 50.000 3.15 0.00 44.36 3.96
2008 4607 0.467844 ATCACACCTTGGCACTTGCA 60.468 50.000 3.15 0.00 44.36 4.08
2009 4608 0.675633 AATCACACCTTGGCACTTGC 59.324 50.000 0.00 0.00 41.14 4.01
2010 4609 1.270550 GGAATCACACCTTGGCACTTG 59.729 52.381 0.00 0.00 0.00 3.16
2011 4610 1.620822 GGAATCACACCTTGGCACTT 58.379 50.000 0.00 0.00 0.00 3.16
2012 4611 0.606401 CGGAATCACACCTTGGCACT 60.606 55.000 0.00 0.00 0.00 4.40
2013 4612 1.875963 CGGAATCACACCTTGGCAC 59.124 57.895 0.00 0.00 0.00 5.01
2014 4613 1.971167 GCGGAATCACACCTTGGCA 60.971 57.895 0.00 0.00 0.00 4.92
2015 4614 2.877691 GCGGAATCACACCTTGGC 59.122 61.111 0.00 0.00 0.00 4.52
2016 4615 2.398554 CCGCGGAATCACACCTTGG 61.399 63.158 24.07 0.00 0.00 3.61
2017 4616 1.234615 AACCGCGGAATCACACCTTG 61.235 55.000 35.90 0.00 0.00 3.61
2018 4617 0.536460 AAACCGCGGAATCACACCTT 60.536 50.000 35.90 9.43 0.00 3.50
2019 4618 0.536460 AAAACCGCGGAATCACACCT 60.536 50.000 35.90 1.64 0.00 4.00
2020 4619 0.312729 AAAAACCGCGGAATCACACC 59.687 50.000 35.90 0.00 0.00 4.16
2021 4620 3.857638 AAAAACCGCGGAATCACAC 57.142 47.368 35.90 0.00 0.00 3.82
2075 4674 9.859427 TGGAAAACAATGAATCATGACTATTTC 57.141 29.630 0.00 0.00 0.00 2.17
2077 4676 9.811995 CATGGAAAACAATGAATCATGACTATT 57.188 29.630 0.00 0.00 34.26 1.73
2078 4677 8.418662 CCATGGAAAACAATGAATCATGACTAT 58.581 33.333 5.56 0.00 34.26 2.12
2079 4678 7.614974 TCCATGGAAAACAATGAATCATGACTA 59.385 33.333 13.46 0.00 34.26 2.59
2080 4679 6.438108 TCCATGGAAAACAATGAATCATGACT 59.562 34.615 13.46 0.00 34.26 3.41
2081 4680 6.632909 TCCATGGAAAACAATGAATCATGAC 58.367 36.000 13.46 0.00 34.26 3.06
2082 4681 6.854091 TCCATGGAAAACAATGAATCATGA 57.146 33.333 13.46 0.00 34.26 3.07
2083 4682 7.413657 GCTTTCCATGGAAAACAATGAATCATG 60.414 37.037 33.74 20.75 42.61 3.07
2084 4683 6.596497 GCTTTCCATGGAAAACAATGAATCAT 59.404 34.615 33.74 0.00 42.61 2.45
2085 4684 5.933463 GCTTTCCATGGAAAACAATGAATCA 59.067 36.000 33.74 12.97 42.61 2.57
2086 4685 5.933463 TGCTTTCCATGGAAAACAATGAATC 59.067 36.000 31.64 16.67 42.61 2.52
2087 4686 5.867330 TGCTTTCCATGGAAAACAATGAAT 58.133 33.333 31.64 0.00 42.61 2.57
2088 4687 5.070180 TCTGCTTTCCATGGAAAACAATGAA 59.930 36.000 32.43 19.56 42.61 2.57
2089 4688 4.588106 TCTGCTTTCCATGGAAAACAATGA 59.412 37.500 32.43 26.24 42.61 2.57
2090 4689 4.885413 TCTGCTTTCCATGGAAAACAATG 58.115 39.130 32.43 24.89 42.61 2.82
2091 4690 5.484715 CATCTGCTTTCCATGGAAAACAAT 58.515 37.500 32.43 25.90 42.61 2.71
2092 4691 4.262549 CCATCTGCTTTCCATGGAAAACAA 60.263 41.667 32.43 25.18 42.61 2.83
2093 4692 3.258872 CCATCTGCTTTCCATGGAAAACA 59.741 43.478 33.74 32.54 42.61 2.83
2094 4693 3.368739 CCCATCTGCTTTCCATGGAAAAC 60.369 47.826 33.74 30.23 42.61 2.43
2095 4694 2.833338 CCCATCTGCTTTCCATGGAAAA 59.167 45.455 33.74 22.69 42.61 2.29
2096 4695 2.459644 CCCATCTGCTTTCCATGGAAA 58.540 47.619 32.66 32.66 39.73 3.13
2097 4696 1.342275 CCCCATCTGCTTTCCATGGAA 60.342 52.381 23.63 23.63 39.73 3.53
2098 4697 0.259647 CCCCATCTGCTTTCCATGGA 59.740 55.000 11.44 11.44 39.73 3.41
2099 4698 0.032813 ACCCCATCTGCTTTCCATGG 60.033 55.000 4.97 4.97 37.42 3.66
2100 4699 2.579873 CTACCCCATCTGCTTTCCATG 58.420 52.381 0.00 0.00 0.00 3.66
2101 4700 1.133668 GCTACCCCATCTGCTTTCCAT 60.134 52.381 0.00 0.00 0.00 3.41
2102 4701 0.255890 GCTACCCCATCTGCTTTCCA 59.744 55.000 0.00 0.00 0.00 3.53
2103 4702 0.255890 TGCTACCCCATCTGCTTTCC 59.744 55.000 0.00 0.00 0.00 3.13
2104 4703 1.065126 ACTGCTACCCCATCTGCTTTC 60.065 52.381 0.00 0.00 0.00 2.62
2105 4704 0.995024 ACTGCTACCCCATCTGCTTT 59.005 50.000 0.00 0.00 0.00 3.51
2106 4705 1.879575 TACTGCTACCCCATCTGCTT 58.120 50.000 0.00 0.00 0.00 3.91
2107 4706 2.109229 ATACTGCTACCCCATCTGCT 57.891 50.000 0.00 0.00 0.00 4.24
2108 4707 2.028020 GGTATACTGCTACCCCATCTGC 60.028 54.545 2.25 0.00 36.00 4.26
2109 4708 3.239449 TGGTATACTGCTACCCCATCTG 58.761 50.000 2.25 0.00 40.47 2.90
2110 4709 3.511477 CTGGTATACTGCTACCCCATCT 58.489 50.000 2.25 0.00 40.47 2.90
2111 4710 2.567615 CCTGGTATACTGCTACCCCATC 59.432 54.545 2.25 0.00 40.47 3.51
2112 4711 2.621070 CCTGGTATACTGCTACCCCAT 58.379 52.381 2.25 0.00 40.47 4.00
2113 4712 2.037998 GCCTGGTATACTGCTACCCCA 61.038 57.143 2.25 0.00 40.47 4.96
2114 4713 0.685660 GCCTGGTATACTGCTACCCC 59.314 60.000 2.25 0.00 40.47 4.95
2115 4714 0.685660 GGCCTGGTATACTGCTACCC 59.314 60.000 2.25 0.00 40.47 3.69
2116 4715 1.420430 TGGCCTGGTATACTGCTACC 58.580 55.000 3.32 0.00 41.39 3.18
2117 4716 2.900546 AGATGGCCTGGTATACTGCTAC 59.099 50.000 3.32 1.18 0.00 3.58
2118 4717 2.899900 CAGATGGCCTGGTATACTGCTA 59.100 50.000 3.32 2.32 39.23 3.49
2119 4718 1.696336 CAGATGGCCTGGTATACTGCT 59.304 52.381 3.32 0.00 39.23 4.24
2120 4719 2.175878 CAGATGGCCTGGTATACTGC 57.824 55.000 3.32 3.68 39.23 4.40
2241 8018 1.679032 GGTCTTTTAGCGTGATGGGCT 60.679 52.381 0.00 0.00 44.35 5.19
2294 10437 3.817238 CCCGTCGTTTTCACCATTTAAG 58.183 45.455 0.00 0.00 0.00 1.85
2299 10442 1.969589 GGCCCGTCGTTTTCACCAT 60.970 57.895 0.00 0.00 0.00 3.55
2300 10443 2.592287 GGCCCGTCGTTTTCACCA 60.592 61.111 0.00 0.00 0.00 4.17
2301 10444 2.281276 AGGCCCGTCGTTTTCACC 60.281 61.111 0.00 0.00 0.00 4.02
2340 10483 0.819666 GGCCTAGATTTTGAGCCCGG 60.820 60.000 0.00 0.00 37.66 5.73
2347 10490 3.841870 GCCCGGGCCTAGATTTTG 58.158 61.111 36.64 0.00 34.56 2.44
2385 10528 0.400213 TTTCTACCAGTGCCCACAGG 59.600 55.000 8.14 8.14 42.88 4.00
2386 10529 2.270352 TTTTCTACCAGTGCCCACAG 57.730 50.000 0.82 0.00 0.00 3.66
2387 10530 2.173782 TCTTTTTCTACCAGTGCCCACA 59.826 45.455 0.82 0.00 0.00 4.17
2388 10531 2.814336 CTCTTTTTCTACCAGTGCCCAC 59.186 50.000 0.00 0.00 0.00 4.61
2389 10532 2.224769 CCTCTTTTTCTACCAGTGCCCA 60.225 50.000 0.00 0.00 0.00 5.36
2390 10533 2.437413 CCTCTTTTTCTACCAGTGCCC 58.563 52.381 0.00 0.00 0.00 5.36
2391 10534 1.813178 GCCTCTTTTTCTACCAGTGCC 59.187 52.381 0.00 0.00 0.00 5.01
2392 10535 2.784347 AGCCTCTTTTTCTACCAGTGC 58.216 47.619 0.00 0.00 0.00 4.40
2393 10536 3.753797 GGAAGCCTCTTTTTCTACCAGTG 59.246 47.826 0.00 0.00 0.00 3.66
2394 10537 3.557264 CGGAAGCCTCTTTTTCTACCAGT 60.557 47.826 0.00 0.00 0.00 4.00
2395 10538 3.003480 CGGAAGCCTCTTTTTCTACCAG 58.997 50.000 0.00 0.00 0.00 4.00
2396 10539 2.370849 ACGGAAGCCTCTTTTTCTACCA 59.629 45.455 0.00 0.00 0.00 3.25
2397 10540 3.001414 GACGGAAGCCTCTTTTTCTACC 58.999 50.000 0.00 0.00 0.00 3.18
2398 10541 3.001414 GGACGGAAGCCTCTTTTTCTAC 58.999 50.000 0.00 0.00 0.00 2.59
2399 10542 2.635915 TGGACGGAAGCCTCTTTTTCTA 59.364 45.455 0.00 0.00 0.00 2.10
2400 10543 1.420138 TGGACGGAAGCCTCTTTTTCT 59.580 47.619 0.00 0.00 0.00 2.52
2401 10544 1.807142 CTGGACGGAAGCCTCTTTTTC 59.193 52.381 0.00 0.00 0.00 2.29
2402 10545 1.897560 CTGGACGGAAGCCTCTTTTT 58.102 50.000 0.00 0.00 0.00 1.94
2403 10546 0.606673 GCTGGACGGAAGCCTCTTTT 60.607 55.000 0.00 0.00 34.45 2.27
2404 10547 1.003233 GCTGGACGGAAGCCTCTTT 60.003 57.895 0.00 0.00 34.45 2.52
2405 10548 2.665603 GCTGGACGGAAGCCTCTT 59.334 61.111 0.00 0.00 34.45 2.85
2410 10553 2.265467 TAATGGGGCTGGACGGAAGC 62.265 60.000 0.00 0.00 40.06 3.86
2411 10554 0.179045 CTAATGGGGCTGGACGGAAG 60.179 60.000 0.00 0.00 0.00 3.46
2412 10555 0.912487 ACTAATGGGGCTGGACGGAA 60.912 55.000 0.00 0.00 0.00 4.30
2413 10556 1.306654 ACTAATGGGGCTGGACGGA 60.307 57.895 0.00 0.00 0.00 4.69
2414 10557 1.146263 GACTAATGGGGCTGGACGG 59.854 63.158 0.00 0.00 0.00 4.79
2415 10558 1.227263 CGACTAATGGGGCTGGACG 60.227 63.158 0.00 0.00 0.00 4.79
2416 10559 1.523938 GCGACTAATGGGGCTGGAC 60.524 63.158 0.00 0.00 0.00 4.02
2417 10560 2.908015 GCGACTAATGGGGCTGGA 59.092 61.111 0.00 0.00 0.00 3.86
2418 10561 2.587322 TTCGCGACTAATGGGGCTGG 62.587 60.000 9.15 0.00 0.00 4.85
2419 10562 0.742990 TTTCGCGACTAATGGGGCTG 60.743 55.000 9.15 0.00 0.00 4.85
2420 10563 0.743345 GTTTCGCGACTAATGGGGCT 60.743 55.000 9.15 0.00 0.00 5.19
2421 10564 0.743345 AGTTTCGCGACTAATGGGGC 60.743 55.000 9.15 0.00 0.00 5.80
2422 10565 1.006832 CAGTTTCGCGACTAATGGGG 58.993 55.000 9.15 0.00 0.00 4.96
2423 10566 1.722011 ACAGTTTCGCGACTAATGGG 58.278 50.000 9.15 0.00 0.00 4.00
2424 10567 2.858344 CCTACAGTTTCGCGACTAATGG 59.142 50.000 9.15 1.53 0.00 3.16
2425 10568 3.766151 TCCTACAGTTTCGCGACTAATG 58.234 45.455 9.15 12.42 0.00 1.90
2426 10569 4.171754 GTTCCTACAGTTTCGCGACTAAT 58.828 43.478 9.15 0.00 0.00 1.73
2427 10570 3.568538 GTTCCTACAGTTTCGCGACTAA 58.431 45.455 9.15 0.00 0.00 2.24
2428 10571 2.095059 GGTTCCTACAGTTTCGCGACTA 60.095 50.000 9.15 0.00 0.00 2.59
2429 10572 1.336609 GGTTCCTACAGTTTCGCGACT 60.337 52.381 9.15 0.00 0.00 4.18
2430 10573 1.066136 GGTTCCTACAGTTTCGCGAC 58.934 55.000 9.15 0.00 0.00 5.19
2431 10574 3.502237 GGTTCCTACAGTTTCGCGA 57.498 52.632 3.71 3.71 0.00 5.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.