Multiple sequence alignment - TraesCS5A01G534800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G534800 chr5A 100.000 2642 0 0 1 2642 691820004 691822645 0.000000e+00 4879.0
1 TraesCS5A01G534800 chr5A 92.275 233 18 0 239 471 380172103 380172335 5.450000e-87 331.0
2 TraesCS5A01G534800 chr4B 94.795 2075 65 8 608 2642 654201534 654203605 0.000000e+00 3193.0
3 TraesCS5A01G534800 chr4D 95.013 1985 66 8 688 2642 507352559 507350578 0.000000e+00 3086.0
4 TraesCS5A01G534800 chr4D 93.249 237 15 1 238 474 47729345 47729110 5.410000e-92 348.0
5 TraesCS5A01G534800 chr7D 85.784 1632 162 30 1031 2642 8870162 8871743 0.000000e+00 1664.0
6 TraesCS5A01G534800 chr7D 87.313 1474 143 18 1100 2556 9223956 9225402 0.000000e+00 1646.0
7 TraesCS5A01G534800 chr7D 80.715 1623 237 45 778 2367 8818645 8820224 0.000000e+00 1194.0
8 TraesCS5A01G534800 chr7D 79.038 1851 272 61 791 2575 10151306 10149506 0.000000e+00 1162.0
9 TraesCS5A01G534800 chr7D 80.858 1468 228 34 930 2368 10963731 10962288 0.000000e+00 1105.0
10 TraesCS5A01G534800 chr7D 80.650 1385 224 20 998 2368 109144722 109143368 0.000000e+00 1033.0
11 TraesCS5A01G534800 chr7D 78.993 1609 242 47 778 2368 10465821 10464291 0.000000e+00 1011.0
12 TraesCS5A01G534800 chr7D 77.929 1690 282 49 999 2642 11066832 11068476 0.000000e+00 970.0
13 TraesCS5A01G534800 chr7D 82.161 768 120 8 1031 1792 9354855 9355611 0.000000e+00 643.0
14 TraesCS5A01G534800 chr7D 91.304 253 22 0 219 471 134196931 134197183 1.950000e-91 346.0
15 TraesCS5A01G534800 chr7D 85.852 311 33 9 919 1225 8849996 8850299 1.180000e-83 320.0
16 TraesCS5A01G534800 chr7D 92.857 56 2 1 473 526 597084467 597084522 2.180000e-11 80.5
17 TraesCS5A01G534800 chr7D 91.525 59 3 1 473 529 628445009 628445067 2.180000e-11 80.5
18 TraesCS5A01G534800 chr4A 81.439 1654 255 34 1012 2642 729426121 729424497 0.000000e+00 1306.0
19 TraesCS5A01G534800 chr4A 80.798 1479 216 38 904 2346 729827381 729828827 0.000000e+00 1096.0
20 TraesCS5A01G534800 chr4A 79.937 1590 237 45 818 2368 728645622 728644076 0.000000e+00 1094.0
21 TraesCS5A01G534800 chr4A 81.723 1335 211 16 979 2290 730322742 730324066 0.000000e+00 1083.0
22 TraesCS5A01G534800 chr4A 82.325 1273 176 30 969 2219 731097619 731098864 0.000000e+00 1059.0
23 TraesCS5A01G534800 chr4A 78.546 1692 280 48 999 2642 727080787 727079131 0.000000e+00 1037.0
24 TraesCS5A01G534800 chr4A 80.990 1252 204 17 971 2209 729057896 729056666 0.000000e+00 963.0
25 TraesCS5A01G534800 chr4A 91.932 533 26 8 2084 2599 730003141 730002609 0.000000e+00 730.0
26 TraesCS5A01G534800 chr4A 90.614 277 23 3 2368 2642 729679238 729679513 5.370000e-97 364.0
27 TraesCS5A01G534800 chr4A 90.253 277 22 4 2368 2642 729158704 729158977 8.990000e-95 357.0
28 TraesCS5A01G534800 chr4A 87.273 275 29 3 2369 2642 728442155 728441886 2.550000e-80 309.0
29 TraesCS5A01G534800 chr4A 83.871 279 37 3 2368 2639 728588524 728588801 2.610000e-65 259.0
30 TraesCS5A01G534800 chr4A 84.116 277 35 4 2368 2636 729238117 729238392 2.610000e-65 259.0
31 TraesCS5A01G534800 chr4A 92.857 56 2 1 471 524 673022337 673022282 2.180000e-11 80.5
32 TraesCS5A01G534800 chr7A 88.395 1103 101 10 1526 2623 9688107 9687027 0.000000e+00 1303.0
33 TraesCS5A01G534800 chr7A 78.325 1684 268 48 999 2642 10269676 10271302 0.000000e+00 998.0
34 TraesCS5A01G534800 chr7A 89.668 271 23 3 2376 2642 9383337 9383606 9.060000e-90 340.0
35 TraesCS5A01G534800 chr7A 87.000 100 7 4 919 1014 9642226 9642129 1.000000e-19 108.0
36 TraesCS5A01G534800 chr1A 76.815 923 129 42 1092 1980 589182066 589181195 8.680000e-120 440.0
37 TraesCS5A01G534800 chr1A 87.821 156 19 0 1095 1250 7115239 7115084 1.620000e-42 183.0
38 TraesCS5A01G534800 chr2D 92.946 241 17 0 234 474 621961907 621961667 4.180000e-93 351.0
39 TraesCS5A01G534800 chr2D 94.444 54 1 1 473 524 95664634 95664581 6.060000e-12 82.4
40 TraesCS5A01G534800 chr6D 92.275 233 18 0 234 466 14615524 14615756 5.450000e-87 331.0
41 TraesCS5A01G534800 chr6D 90.244 246 24 0 226 471 87385636 87385881 3.280000e-84 322.0
42 TraesCS5A01G534800 chr2B 92.308 234 17 1 238 471 503608284 503608516 5.450000e-87 331.0
43 TraesCS5A01G534800 chr2B 94.643 56 1 1 471 524 760147240 760147185 4.690000e-13 86.1
44 TraesCS5A01G534800 chr5B 91.597 238 20 0 234 471 680927232 680927469 1.960000e-86 329.0
45 TraesCS5A01G534800 chr1D 91.561 237 20 0 238 474 406828837 406828601 7.050000e-86 327.0
46 TraesCS5A01G534800 chr1D 85.465 172 25 0 1074 1245 6463123 6462952 2.090000e-41 180.0
47 TraesCS5A01G534800 chr5D 96.226 53 2 0 473 525 419271758 419271810 1.300000e-13 87.9
48 TraesCS5A01G534800 chr5D 87.879 66 6 1 473 536 236411736 236411671 2.820000e-10 76.8
49 TraesCS5A01G534800 chr3D 94.545 55 1 1 473 525 361755768 361755714 1.690000e-12 84.2
50 TraesCS5A01G534800 chr3D 92.857 56 2 1 471 524 581988141 581988196 2.180000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G534800 chr5A 691820004 691822645 2641 False 4879 4879 100.000 1 2642 1 chr5A.!!$F2 2641
1 TraesCS5A01G534800 chr4B 654201534 654203605 2071 False 3193 3193 94.795 608 2642 1 chr4B.!!$F1 2034
2 TraesCS5A01G534800 chr4D 507350578 507352559 1981 True 3086 3086 95.013 688 2642 1 chr4D.!!$R2 1954
3 TraesCS5A01G534800 chr7D 8870162 8871743 1581 False 1664 1664 85.784 1031 2642 1 chr7D.!!$F3 1611
4 TraesCS5A01G534800 chr7D 9223956 9225402 1446 False 1646 1646 87.313 1100 2556 1 chr7D.!!$F4 1456
5 TraesCS5A01G534800 chr7D 8818645 8820224 1579 False 1194 1194 80.715 778 2367 1 chr7D.!!$F1 1589
6 TraesCS5A01G534800 chr7D 10149506 10151306 1800 True 1162 1162 79.038 791 2575 1 chr7D.!!$R1 1784
7 TraesCS5A01G534800 chr7D 10962288 10963731 1443 True 1105 1105 80.858 930 2368 1 chr7D.!!$R3 1438
8 TraesCS5A01G534800 chr7D 109143368 109144722 1354 True 1033 1033 80.650 998 2368 1 chr7D.!!$R4 1370
9 TraesCS5A01G534800 chr7D 10464291 10465821 1530 True 1011 1011 78.993 778 2368 1 chr7D.!!$R2 1590
10 TraesCS5A01G534800 chr7D 11066832 11068476 1644 False 970 970 77.929 999 2642 1 chr7D.!!$F6 1643
11 TraesCS5A01G534800 chr7D 9354855 9355611 756 False 643 643 82.161 1031 1792 1 chr7D.!!$F5 761
12 TraesCS5A01G534800 chr4A 729424497 729426121 1624 True 1306 1306 81.439 1012 2642 1 chr4A.!!$R6 1630
13 TraesCS5A01G534800 chr4A 729827381 729828827 1446 False 1096 1096 80.798 904 2346 1 chr4A.!!$F5 1442
14 TraesCS5A01G534800 chr4A 728644076 728645622 1546 True 1094 1094 79.937 818 2368 1 chr4A.!!$R4 1550
15 TraesCS5A01G534800 chr4A 730322742 730324066 1324 False 1083 1083 81.723 979 2290 1 chr4A.!!$F6 1311
16 TraesCS5A01G534800 chr4A 731097619 731098864 1245 False 1059 1059 82.325 969 2219 1 chr4A.!!$F7 1250
17 TraesCS5A01G534800 chr4A 727079131 727080787 1656 True 1037 1037 78.546 999 2642 1 chr4A.!!$R2 1643
18 TraesCS5A01G534800 chr4A 729056666 729057896 1230 True 963 963 80.990 971 2209 1 chr4A.!!$R5 1238
19 TraesCS5A01G534800 chr4A 730002609 730003141 532 True 730 730 91.932 2084 2599 1 chr4A.!!$R7 515
20 TraesCS5A01G534800 chr7A 9687027 9688107 1080 True 1303 1303 88.395 1526 2623 1 chr7A.!!$R2 1097
21 TraesCS5A01G534800 chr7A 10269676 10271302 1626 False 998 998 78.325 999 2642 1 chr7A.!!$F2 1643
22 TraesCS5A01G534800 chr1A 589181195 589182066 871 True 440 440 76.815 1092 1980 1 chr1A.!!$R2 888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.030603 AGATCCCCCTCCCTCTTGAC 60.031 60.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2194 0.983378 ATCCCAGCCACCCTGTACTC 60.983 60.0 0.0 0.0 40.06 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.773328 TCTTGATAGAAGATTTTAAAATGCACG 57.227 29.630 17.98 3.56 0.00 5.34
31 32 9.773328 CTTGATAGAAGATTTTAAAATGCACGA 57.227 29.630 17.98 5.83 0.00 4.35
32 33 9.773328 TTGATAGAAGATTTTAAAATGCACGAG 57.227 29.630 17.98 0.00 0.00 4.18
33 34 8.946085 TGATAGAAGATTTTAAAATGCACGAGT 58.054 29.630 17.98 0.00 0.00 4.18
44 45 9.817809 TTTAAAATGCACGAGTATAAGAGATCT 57.182 29.630 0.00 0.00 0.00 2.75
47 48 9.988815 AAAATGCACGAGTATAAGAGATCTATT 57.011 29.630 7.87 7.87 0.00 1.73
48 49 8.978564 AATGCACGAGTATAAGAGATCTATTG 57.021 34.615 12.86 0.00 0.00 1.90
49 50 6.382608 TGCACGAGTATAAGAGATCTATTGC 58.617 40.000 12.86 6.19 0.00 3.56
50 51 6.016276 TGCACGAGTATAAGAGATCTATTGCA 60.016 38.462 12.86 8.70 0.00 4.08
51 52 6.863645 GCACGAGTATAAGAGATCTATTGCAA 59.136 38.462 12.86 0.00 0.00 4.08
52 53 7.543868 GCACGAGTATAAGAGATCTATTGCAAT 59.456 37.037 17.56 17.56 0.00 3.56
53 54 9.416794 CACGAGTATAAGAGATCTATTGCAATT 57.583 33.333 18.75 0.00 0.00 2.32
61 62 8.900983 AAGAGATCTATTGCAATTACCTTCTC 57.099 34.615 18.75 19.15 0.00 2.87
62 63 8.261349 AGAGATCTATTGCAATTACCTTCTCT 57.739 34.615 18.75 20.73 33.29 3.10
63 64 9.373450 AGAGATCTATTGCAATTACCTTCTCTA 57.627 33.333 23.82 5.19 35.65 2.43
100 101 9.959721 AATCATCCTATTAATATTTAGGTGCGT 57.040 29.630 11.39 2.79 37.00 5.24
101 102 8.771920 TCATCCTATTAATATTTAGGTGCGTG 57.228 34.615 11.39 7.92 37.00 5.34
102 103 8.372459 TCATCCTATTAATATTTAGGTGCGTGT 58.628 33.333 11.39 0.00 37.00 4.49
103 104 7.956420 TCCTATTAATATTTAGGTGCGTGTG 57.044 36.000 11.39 0.00 37.00 3.82
104 105 6.425721 TCCTATTAATATTTAGGTGCGTGTGC 59.574 38.462 11.39 0.00 37.00 4.57
105 106 6.426937 CCTATTAATATTTAGGTGCGTGTGCT 59.573 38.462 5.38 0.00 43.34 4.40
106 107 6.693315 ATTAATATTTAGGTGCGTGTGCTT 57.307 33.333 0.00 0.00 43.34 3.91
107 108 7.795482 ATTAATATTTAGGTGCGTGTGCTTA 57.205 32.000 0.00 0.00 43.34 3.09
108 109 5.734855 AATATTTAGGTGCGTGTGCTTAG 57.265 39.130 0.00 0.00 43.34 2.18
109 110 2.823924 TTTAGGTGCGTGTGCTTAGA 57.176 45.000 0.00 0.00 43.34 2.10
110 111 2.823924 TTAGGTGCGTGTGCTTAGAA 57.176 45.000 0.00 0.00 43.34 2.10
111 112 3.328382 TTAGGTGCGTGTGCTTAGAAT 57.672 42.857 0.00 0.00 43.34 2.40
112 113 2.185004 AGGTGCGTGTGCTTAGAATT 57.815 45.000 0.00 0.00 43.34 2.17
113 114 3.328382 AGGTGCGTGTGCTTAGAATTA 57.672 42.857 0.00 0.00 43.34 1.40
114 115 3.873910 AGGTGCGTGTGCTTAGAATTAT 58.126 40.909 0.00 0.00 43.34 1.28
115 116 4.261801 AGGTGCGTGTGCTTAGAATTATT 58.738 39.130 0.00 0.00 43.34 1.40
116 117 4.094887 AGGTGCGTGTGCTTAGAATTATTG 59.905 41.667 0.00 0.00 43.34 1.90
117 118 3.786048 GTGCGTGTGCTTAGAATTATTGC 59.214 43.478 0.00 0.00 43.34 3.56
118 119 3.689161 TGCGTGTGCTTAGAATTATTGCT 59.311 39.130 0.00 0.00 43.34 3.91
119 120 4.155826 TGCGTGTGCTTAGAATTATTGCTT 59.844 37.500 0.00 0.00 43.34 3.91
120 121 4.730521 GCGTGTGCTTAGAATTATTGCTTC 59.269 41.667 0.00 0.00 38.39 3.86
121 122 5.266242 CGTGTGCTTAGAATTATTGCTTCC 58.734 41.667 0.00 0.00 0.00 3.46
122 123 5.065218 CGTGTGCTTAGAATTATTGCTTCCT 59.935 40.000 0.00 0.00 0.00 3.36
123 124 6.261118 GTGTGCTTAGAATTATTGCTTCCTG 58.739 40.000 0.00 0.00 0.00 3.86
124 125 5.163622 TGTGCTTAGAATTATTGCTTCCTGC 60.164 40.000 0.00 0.00 43.25 4.85
125 126 4.035558 TGCTTAGAATTATTGCTTCCTGCG 59.964 41.667 0.00 0.00 46.63 5.18
126 127 4.035675 GCTTAGAATTATTGCTTCCTGCGT 59.964 41.667 0.00 0.00 46.63 5.24
127 128 5.734855 TTAGAATTATTGCTTCCTGCGTC 57.265 39.130 0.00 0.00 46.63 5.19
128 129 3.609853 AGAATTATTGCTTCCTGCGTCA 58.390 40.909 0.00 0.00 46.63 4.35
129 130 3.375299 AGAATTATTGCTTCCTGCGTCAC 59.625 43.478 0.00 0.00 46.63 3.67
130 131 2.472695 TTATTGCTTCCTGCGTCACT 57.527 45.000 0.00 0.00 46.63 3.41
131 132 3.603158 TTATTGCTTCCTGCGTCACTA 57.397 42.857 0.00 0.00 46.63 2.74
132 133 2.472695 ATTGCTTCCTGCGTCACTAA 57.527 45.000 0.00 0.00 46.63 2.24
133 134 2.248280 TTGCTTCCTGCGTCACTAAA 57.752 45.000 0.00 0.00 46.63 1.85
134 135 1.795768 TGCTTCCTGCGTCACTAAAG 58.204 50.000 0.00 0.00 46.63 1.85
135 136 1.070134 TGCTTCCTGCGTCACTAAAGT 59.930 47.619 0.00 0.00 46.63 2.66
136 137 1.461127 GCTTCCTGCGTCACTAAAGTG 59.539 52.381 3.64 3.64 46.91 3.16
137 138 2.755650 CTTCCTGCGTCACTAAAGTGT 58.244 47.619 9.81 0.00 45.76 3.55
138 139 2.902705 TCCTGCGTCACTAAAGTGTT 57.097 45.000 9.81 0.00 45.76 3.32
139 140 2.750948 TCCTGCGTCACTAAAGTGTTC 58.249 47.619 9.81 4.51 45.76 3.18
140 141 2.364324 TCCTGCGTCACTAAAGTGTTCT 59.636 45.455 9.81 0.00 45.76 3.01
141 142 3.131396 CCTGCGTCACTAAAGTGTTCTT 58.869 45.455 9.81 0.00 45.76 2.52
142 143 3.560068 CCTGCGTCACTAAAGTGTTCTTT 59.440 43.478 9.81 0.00 45.76 2.52
143 144 4.318831 CCTGCGTCACTAAAGTGTTCTTTC 60.319 45.833 9.81 0.00 45.76 2.62
144 145 3.558418 TGCGTCACTAAAGTGTTCTTTCC 59.442 43.478 9.81 0.00 45.76 3.13
145 146 3.059120 GCGTCACTAAAGTGTTCTTTCCC 60.059 47.826 9.81 0.00 45.76 3.97
146 147 3.497262 CGTCACTAAAGTGTTCTTTCCCC 59.503 47.826 9.81 0.00 45.76 4.81
147 148 4.715713 GTCACTAAAGTGTTCTTTCCCCT 58.284 43.478 9.81 0.00 45.76 4.79
148 149 4.755629 GTCACTAAAGTGTTCTTTCCCCTC 59.244 45.833 9.81 0.00 45.76 4.30
149 150 3.746492 CACTAAAGTGTTCTTTCCCCTCG 59.254 47.826 1.81 0.00 42.13 4.63
150 151 3.390311 ACTAAAGTGTTCTTTCCCCTCGT 59.610 43.478 0.00 0.00 42.13 4.18
151 152 4.590222 ACTAAAGTGTTCTTTCCCCTCGTA 59.410 41.667 0.00 0.00 42.13 3.43
152 153 4.426736 AAAGTGTTCTTTCCCCTCGTAA 57.573 40.909 0.00 0.00 39.36 3.18
153 154 4.635699 AAGTGTTCTTTCCCCTCGTAAT 57.364 40.909 0.00 0.00 0.00 1.89
154 155 4.635699 AGTGTTCTTTCCCCTCGTAATT 57.364 40.909 0.00 0.00 0.00 1.40
155 156 5.750352 AGTGTTCTTTCCCCTCGTAATTA 57.250 39.130 0.00 0.00 0.00 1.40
156 157 6.309389 AGTGTTCTTTCCCCTCGTAATTAT 57.691 37.500 0.00 0.00 0.00 1.28
157 158 6.346896 AGTGTTCTTTCCCCTCGTAATTATC 58.653 40.000 0.00 0.00 0.00 1.75
158 159 6.156429 AGTGTTCTTTCCCCTCGTAATTATCT 59.844 38.462 0.00 0.00 0.00 1.98
159 160 6.822170 GTGTTCTTTCCCCTCGTAATTATCTT 59.178 38.462 0.00 0.00 0.00 2.40
160 161 6.821665 TGTTCTTTCCCCTCGTAATTATCTTG 59.178 38.462 0.00 0.00 0.00 3.02
161 162 5.365619 TCTTTCCCCTCGTAATTATCTTGC 58.634 41.667 0.00 0.00 0.00 4.01
162 163 5.130477 TCTTTCCCCTCGTAATTATCTTGCT 59.870 40.000 0.00 0.00 0.00 3.91
163 164 6.325545 TCTTTCCCCTCGTAATTATCTTGCTA 59.674 38.462 0.00 0.00 0.00 3.49
164 165 5.464030 TCCCCTCGTAATTATCTTGCTAC 57.536 43.478 0.00 0.00 0.00 3.58
165 166 4.897076 TCCCCTCGTAATTATCTTGCTACA 59.103 41.667 0.00 0.00 0.00 2.74
166 167 5.542635 TCCCCTCGTAATTATCTTGCTACAT 59.457 40.000 0.00 0.00 0.00 2.29
167 168 5.869888 CCCCTCGTAATTATCTTGCTACATC 59.130 44.000 0.00 0.00 0.00 3.06
168 169 6.455647 CCCTCGTAATTATCTTGCTACATCA 58.544 40.000 0.00 0.00 0.00 3.07
169 170 6.587990 CCCTCGTAATTATCTTGCTACATCAG 59.412 42.308 0.00 0.00 0.00 2.90
170 171 7.371159 CCTCGTAATTATCTTGCTACATCAGA 58.629 38.462 0.00 0.00 0.00 3.27
171 172 8.031864 CCTCGTAATTATCTTGCTACATCAGAT 58.968 37.037 0.00 0.00 0.00 2.90
172 173 8.972262 TCGTAATTATCTTGCTACATCAGATC 57.028 34.615 0.00 0.00 0.00 2.75
173 174 8.029522 TCGTAATTATCTTGCTACATCAGATCC 58.970 37.037 0.00 0.00 0.00 3.36
174 175 7.276658 CGTAATTATCTTGCTACATCAGATCCC 59.723 40.741 0.00 0.00 0.00 3.85
175 176 5.489792 TTATCTTGCTACATCAGATCCCC 57.510 43.478 0.00 0.00 0.00 4.81
176 177 2.050144 TCTTGCTACATCAGATCCCCC 58.950 52.381 0.00 0.00 0.00 5.40
177 178 2.053244 CTTGCTACATCAGATCCCCCT 58.947 52.381 0.00 0.00 0.00 4.79
178 179 1.722034 TGCTACATCAGATCCCCCTC 58.278 55.000 0.00 0.00 0.00 4.30
179 180 0.980423 GCTACATCAGATCCCCCTCC 59.020 60.000 0.00 0.00 0.00 4.30
180 181 1.650528 CTACATCAGATCCCCCTCCC 58.349 60.000 0.00 0.00 0.00 4.30
181 182 1.150986 CTACATCAGATCCCCCTCCCT 59.849 57.143 0.00 0.00 0.00 4.20
182 183 0.104725 ACATCAGATCCCCCTCCCTC 60.105 60.000 0.00 0.00 0.00 4.30
183 184 0.193069 CATCAGATCCCCCTCCCTCT 59.807 60.000 0.00 0.00 0.00 3.69
184 185 0.955752 ATCAGATCCCCCTCCCTCTT 59.044 55.000 0.00 0.00 0.00 2.85
185 186 0.030705 TCAGATCCCCCTCCCTCTTG 60.031 60.000 0.00 0.00 0.00 3.02
186 187 0.030705 CAGATCCCCCTCCCTCTTGA 60.031 60.000 0.00 0.00 0.00 3.02
187 188 0.030603 AGATCCCCCTCCCTCTTGAC 60.031 60.000 0.00 0.00 0.00 3.18
188 189 0.326618 GATCCCCCTCCCTCTTGACA 60.327 60.000 0.00 0.00 0.00 3.58
189 190 0.121197 ATCCCCCTCCCTCTTGACAA 59.879 55.000 0.00 0.00 0.00 3.18
190 191 0.840722 TCCCCCTCCCTCTTGACAAC 60.841 60.000 0.00 0.00 0.00 3.32
191 192 1.685820 CCCCTCCCTCTTGACAACC 59.314 63.158 0.00 0.00 0.00 3.77
192 193 0.842467 CCCCTCCCTCTTGACAACCT 60.842 60.000 0.00 0.00 0.00 3.50
193 194 1.068121 CCCTCCCTCTTGACAACCTT 58.932 55.000 0.00 0.00 0.00 3.50
194 195 2.266279 CCCTCCCTCTTGACAACCTTA 58.734 52.381 0.00 0.00 0.00 2.69
195 196 2.237392 CCCTCCCTCTTGACAACCTTAG 59.763 54.545 0.00 0.00 0.00 2.18
196 197 2.355209 CCTCCCTCTTGACAACCTTAGC 60.355 54.545 0.00 0.00 0.00 3.09
197 198 2.303022 CTCCCTCTTGACAACCTTAGCA 59.697 50.000 0.00 0.00 0.00 3.49
198 199 2.912956 TCCCTCTTGACAACCTTAGCAT 59.087 45.455 0.00 0.00 0.00 3.79
199 200 3.330701 TCCCTCTTGACAACCTTAGCATT 59.669 43.478 0.00 0.00 0.00 3.56
200 201 4.082125 CCCTCTTGACAACCTTAGCATTT 58.918 43.478 0.00 0.00 0.00 2.32
201 202 4.156739 CCCTCTTGACAACCTTAGCATTTC 59.843 45.833 0.00 0.00 0.00 2.17
202 203 5.006386 CCTCTTGACAACCTTAGCATTTCT 58.994 41.667 0.00 0.00 0.00 2.52
203 204 6.173339 CCTCTTGACAACCTTAGCATTTCTA 58.827 40.000 0.00 0.00 0.00 2.10
204 205 6.092807 CCTCTTGACAACCTTAGCATTTCTAC 59.907 42.308 0.00 0.00 0.00 2.59
205 206 6.530120 TCTTGACAACCTTAGCATTTCTACA 58.470 36.000 0.00 0.00 0.00 2.74
206 207 6.995686 TCTTGACAACCTTAGCATTTCTACAA 59.004 34.615 0.00 0.00 0.00 2.41
207 208 6.554334 TGACAACCTTAGCATTTCTACAAC 57.446 37.500 0.00 0.00 0.00 3.32
208 209 5.472137 TGACAACCTTAGCATTTCTACAACC 59.528 40.000 0.00 0.00 0.00 3.77
209 210 5.381757 ACAACCTTAGCATTTCTACAACCA 58.618 37.500 0.00 0.00 0.00 3.67
210 211 5.830991 ACAACCTTAGCATTTCTACAACCAA 59.169 36.000 0.00 0.00 0.00 3.67
211 212 6.016276 ACAACCTTAGCATTTCTACAACCAAG 60.016 38.462 0.00 0.00 0.00 3.61
212 213 5.631119 ACCTTAGCATTTCTACAACCAAGT 58.369 37.500 0.00 0.00 0.00 3.16
213 214 6.068670 ACCTTAGCATTTCTACAACCAAGTT 58.931 36.000 0.00 0.00 0.00 2.66
225 226 4.223320 CAACCAAGTTGTTGTATTCGCT 57.777 40.909 1.45 0.00 40.54 4.93
226 227 4.606961 CAACCAAGTTGTTGTATTCGCTT 58.393 39.130 1.45 0.00 40.54 4.68
227 228 4.483476 ACCAAGTTGTTGTATTCGCTTC 57.517 40.909 1.45 0.00 30.95 3.86
228 229 3.880490 ACCAAGTTGTTGTATTCGCTTCA 59.120 39.130 1.45 0.00 30.95 3.02
229 230 4.219033 CCAAGTTGTTGTATTCGCTTCAC 58.781 43.478 1.45 0.00 30.95 3.18
230 231 4.024048 CCAAGTTGTTGTATTCGCTTCACT 60.024 41.667 1.45 0.00 30.95 3.41
231 232 4.992381 AGTTGTTGTATTCGCTTCACTC 57.008 40.909 0.00 0.00 0.00 3.51
232 233 4.632153 AGTTGTTGTATTCGCTTCACTCT 58.368 39.130 0.00 0.00 0.00 3.24
233 234 5.057149 AGTTGTTGTATTCGCTTCACTCTT 58.943 37.500 0.00 0.00 0.00 2.85
234 235 5.177696 AGTTGTTGTATTCGCTTCACTCTTC 59.822 40.000 0.00 0.00 0.00 2.87
235 236 3.673338 TGTTGTATTCGCTTCACTCTTCG 59.327 43.478 0.00 0.00 0.00 3.79
236 237 3.570926 TGTATTCGCTTCACTCTTCGT 57.429 42.857 0.00 0.00 0.00 3.85
237 238 3.909430 TGTATTCGCTTCACTCTTCGTT 58.091 40.909 0.00 0.00 0.00 3.85
238 239 3.918591 TGTATTCGCTTCACTCTTCGTTC 59.081 43.478 0.00 0.00 0.00 3.95
239 240 1.779569 TTCGCTTCACTCTTCGTTCC 58.220 50.000 0.00 0.00 0.00 3.62
240 241 0.959553 TCGCTTCACTCTTCGTTCCT 59.040 50.000 0.00 0.00 0.00 3.36
241 242 1.068472 TCGCTTCACTCTTCGTTCCTC 60.068 52.381 0.00 0.00 0.00 3.71
242 243 1.715993 GCTTCACTCTTCGTTCCTCC 58.284 55.000 0.00 0.00 0.00 4.30
243 244 1.273886 GCTTCACTCTTCGTTCCTCCT 59.726 52.381 0.00 0.00 0.00 3.69
244 245 2.672760 GCTTCACTCTTCGTTCCTCCTC 60.673 54.545 0.00 0.00 0.00 3.71
245 246 1.546961 TCACTCTTCGTTCCTCCTCC 58.453 55.000 0.00 0.00 0.00 4.30
246 247 1.075698 TCACTCTTCGTTCCTCCTCCT 59.924 52.381 0.00 0.00 0.00 3.69
247 248 1.474879 CACTCTTCGTTCCTCCTCCTC 59.525 57.143 0.00 0.00 0.00 3.71
248 249 1.107945 CTCTTCGTTCCTCCTCCTCC 58.892 60.000 0.00 0.00 0.00 4.30
249 250 0.408309 TCTTCGTTCCTCCTCCTCCA 59.592 55.000 0.00 0.00 0.00 3.86
250 251 1.203137 TCTTCGTTCCTCCTCCTCCAA 60.203 52.381 0.00 0.00 0.00 3.53
251 252 1.205893 CTTCGTTCCTCCTCCTCCAAG 59.794 57.143 0.00 0.00 0.00 3.61
252 253 0.408309 TCGTTCCTCCTCCTCCAAGA 59.592 55.000 0.00 0.00 0.00 3.02
253 254 1.203137 TCGTTCCTCCTCCTCCAAGAA 60.203 52.381 0.00 0.00 0.00 2.52
254 255 1.623811 CGTTCCTCCTCCTCCAAGAAA 59.376 52.381 0.00 0.00 0.00 2.52
255 256 2.354203 CGTTCCTCCTCCTCCAAGAAAG 60.354 54.545 0.00 0.00 0.00 2.62
256 257 2.907042 GTTCCTCCTCCTCCAAGAAAGA 59.093 50.000 0.00 0.00 0.00 2.52
257 258 3.275848 TCCTCCTCCTCCAAGAAAGAA 57.724 47.619 0.00 0.00 0.00 2.52
258 259 3.598264 TCCTCCTCCTCCAAGAAAGAAA 58.402 45.455 0.00 0.00 0.00 2.52
259 260 3.584848 TCCTCCTCCTCCAAGAAAGAAAG 59.415 47.826 0.00 0.00 0.00 2.62
260 261 3.329225 CCTCCTCCTCCAAGAAAGAAAGT 59.671 47.826 0.00 0.00 0.00 2.66
261 262 4.202514 CCTCCTCCTCCAAGAAAGAAAGTT 60.203 45.833 0.00 0.00 0.00 2.66
262 263 5.013183 CCTCCTCCTCCAAGAAAGAAAGTTA 59.987 44.000 0.00 0.00 0.00 2.24
263 264 6.115448 TCCTCCTCCAAGAAAGAAAGTTAG 57.885 41.667 0.00 0.00 0.00 2.34
264 265 5.013183 TCCTCCTCCAAGAAAGAAAGTTAGG 59.987 44.000 0.00 0.00 0.00 2.69
265 266 5.242795 TCCTCCAAGAAAGAAAGTTAGGG 57.757 43.478 0.00 0.00 0.00 3.53
266 267 4.663592 TCCTCCAAGAAAGAAAGTTAGGGT 59.336 41.667 0.00 0.00 0.00 4.34
267 268 5.133830 TCCTCCAAGAAAGAAAGTTAGGGTT 59.866 40.000 0.00 0.00 0.00 4.11
268 269 5.833667 CCTCCAAGAAAGAAAGTTAGGGTTT 59.166 40.000 0.00 0.00 0.00 3.27
269 270 6.323996 CCTCCAAGAAAGAAAGTTAGGGTTTT 59.676 38.462 0.00 0.00 0.00 2.43
270 271 7.504574 CCTCCAAGAAAGAAAGTTAGGGTTTTA 59.495 37.037 0.00 0.00 0.00 1.52
271 272 8.459911 TCCAAGAAAGAAAGTTAGGGTTTTAG 57.540 34.615 0.00 0.00 0.00 1.85
272 273 7.013942 TCCAAGAAAGAAAGTTAGGGTTTTAGC 59.986 37.037 0.00 0.00 0.00 3.09
273 274 6.896021 AGAAAGAAAGTTAGGGTTTTAGCC 57.104 37.500 0.00 0.00 35.59 3.93
275 276 6.715718 AGAAAGAAAGTTAGGGTTTTAGCCTC 59.284 38.462 0.00 0.00 43.92 4.70
276 277 5.844773 AGAAAGTTAGGGTTTTAGCCTCT 57.155 39.130 0.00 0.00 43.92 3.69
277 278 5.806818 AGAAAGTTAGGGTTTTAGCCTCTC 58.193 41.667 0.00 0.00 43.92 3.20
278 279 3.889520 AGTTAGGGTTTTAGCCTCTCG 57.110 47.619 0.00 0.00 43.92 4.04
279 280 3.171528 AGTTAGGGTTTTAGCCTCTCGT 58.828 45.455 0.00 0.00 43.92 4.18
280 281 3.195182 AGTTAGGGTTTTAGCCTCTCGTC 59.805 47.826 0.00 0.00 43.92 4.20
281 282 0.531200 AGGGTTTTAGCCTCTCGTCG 59.469 55.000 0.00 0.00 43.92 5.12
282 283 0.459759 GGGTTTTAGCCTCTCGTCGG 60.460 60.000 0.00 0.00 31.81 4.79
302 303 4.767255 CCGCTGCAGGTCCACCTC 62.767 72.222 17.12 0.00 46.65 3.85
304 305 4.008933 GCTGCAGGTCCACCTCGT 62.009 66.667 17.12 0.00 46.65 4.18
305 306 2.262915 CTGCAGGTCCACCTCGTC 59.737 66.667 5.57 0.00 46.65 4.20
306 307 2.203640 TGCAGGTCCACCTCGTCT 60.204 61.111 0.00 0.00 46.65 4.18
307 308 2.219325 CTGCAGGTCCACCTCGTCTC 62.219 65.000 5.57 0.00 46.65 3.36
308 309 3.007973 GCAGGTCCACCTCGTCTCC 62.008 68.421 0.00 0.00 46.65 3.71
309 310 2.361357 AGGTCCACCTCGTCTCCG 60.361 66.667 0.00 0.00 44.77 4.63
310 311 3.450115 GGTCCACCTCGTCTCCGG 61.450 72.222 0.00 0.00 33.95 5.14
311 312 2.675772 GTCCACCTCGTCTCCGGT 60.676 66.667 0.00 0.00 33.95 5.28
315 316 2.435219 ACCTCGTCTCCGGTGACT 59.565 61.111 28.56 11.81 35.00 3.41
316 317 1.674980 ACCTCGTCTCCGGTGACTC 60.675 63.158 28.56 9.19 35.00 3.36
317 318 1.377463 CCTCGTCTCCGGTGACTCT 60.377 63.158 28.56 0.00 35.00 3.24
318 319 0.107800 CCTCGTCTCCGGTGACTCTA 60.108 60.000 28.56 15.90 35.00 2.43
319 320 1.292061 CTCGTCTCCGGTGACTCTAG 58.708 60.000 28.56 20.12 35.00 2.43
320 321 0.107800 TCGTCTCCGGTGACTCTAGG 60.108 60.000 28.56 16.01 35.00 3.02
321 322 1.096386 CGTCTCCGGTGACTCTAGGG 61.096 65.000 28.56 12.47 35.00 3.53
322 323 0.034283 GTCTCCGGTGACTCTAGGGT 60.034 60.000 25.66 0.00 34.39 4.34
323 324 0.255318 TCTCCGGTGACTCTAGGGTC 59.745 60.000 16.34 16.34 36.81 4.46
324 325 0.034380 CTCCGGTGACTCTAGGGTCA 60.034 60.000 21.84 21.84 42.96 4.02
325 326 0.629596 TCCGGTGACTCTAGGGTCAT 59.370 55.000 27.72 0.00 46.04 3.06
326 327 0.747255 CCGGTGACTCTAGGGTCATG 59.253 60.000 27.72 21.57 46.04 3.07
327 328 0.747255 CGGTGACTCTAGGGTCATGG 59.253 60.000 27.72 18.21 46.04 3.66
328 329 1.123928 GGTGACTCTAGGGTCATGGG 58.876 60.000 27.72 0.00 46.04 4.00
329 330 1.123928 GTGACTCTAGGGTCATGGGG 58.876 60.000 27.72 0.00 46.04 4.96
330 331 0.031111 TGACTCTAGGGTCATGGGGG 60.031 60.000 21.84 0.00 40.72 5.40
331 332 1.384643 ACTCTAGGGTCATGGGGGC 60.385 63.158 0.00 0.00 0.00 5.80
332 333 2.445845 TCTAGGGTCATGGGGGCG 60.446 66.667 0.00 0.00 0.00 6.13
333 334 4.256180 CTAGGGTCATGGGGGCGC 62.256 72.222 0.00 0.00 0.00 6.53
348 349 2.745884 CGCGGTGGATCTTGCCAA 60.746 61.111 0.00 0.00 40.20 4.52
349 350 2.753966 CGCGGTGGATCTTGCCAAG 61.754 63.158 0.00 0.00 40.20 3.61
350 351 1.675641 GCGGTGGATCTTGCCAAGT 60.676 57.895 4.04 0.00 40.20 3.16
351 352 1.926511 GCGGTGGATCTTGCCAAGTG 61.927 60.000 4.04 0.00 40.20 3.16
352 353 1.885871 GGTGGATCTTGCCAAGTGC 59.114 57.895 4.04 0.00 40.20 4.40
353 354 1.598701 GGTGGATCTTGCCAAGTGCC 61.599 60.000 4.04 7.73 40.20 5.01
354 355 1.675310 TGGATCTTGCCAAGTGCCG 60.675 57.895 4.04 0.00 40.16 5.69
355 356 2.409870 GGATCTTGCCAAGTGCCGG 61.410 63.158 4.04 0.00 40.16 6.13
379 380 3.636153 GAGGGCTCCATTTTCAGTAGT 57.364 47.619 0.00 0.00 0.00 2.73
380 381 3.956744 GAGGGCTCCATTTTCAGTAGTT 58.043 45.455 0.00 0.00 0.00 2.24
381 382 3.690460 AGGGCTCCATTTTCAGTAGTTG 58.310 45.455 0.00 0.00 0.00 3.16
382 383 3.074538 AGGGCTCCATTTTCAGTAGTTGT 59.925 43.478 0.00 0.00 0.00 3.32
383 384 3.826729 GGGCTCCATTTTCAGTAGTTGTT 59.173 43.478 0.00 0.00 0.00 2.83
384 385 4.280929 GGGCTCCATTTTCAGTAGTTGTTT 59.719 41.667 0.00 0.00 0.00 2.83
385 386 5.221441 GGGCTCCATTTTCAGTAGTTGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
386 387 5.920840 GGCTCCATTTTCAGTAGTTGTTTTC 59.079 40.000 0.00 0.00 0.00 2.29
387 388 6.239036 GGCTCCATTTTCAGTAGTTGTTTTCT 60.239 38.462 0.00 0.00 0.00 2.52
388 389 6.638468 GCTCCATTTTCAGTAGTTGTTTTCTG 59.362 38.462 0.00 0.00 0.00 3.02
389 390 7.639113 TCCATTTTCAGTAGTTGTTTTCTGT 57.361 32.000 0.00 0.00 0.00 3.41
390 391 7.703328 TCCATTTTCAGTAGTTGTTTTCTGTC 58.297 34.615 0.00 0.00 0.00 3.51
391 392 7.556275 TCCATTTTCAGTAGTTGTTTTCTGTCT 59.444 33.333 0.00 0.00 0.00 3.41
392 393 8.190784 CCATTTTCAGTAGTTGTTTTCTGTCTT 58.809 33.333 0.00 0.00 0.00 3.01
393 394 9.013490 CATTTTCAGTAGTTGTTTTCTGTCTTG 57.987 33.333 0.00 0.00 0.00 3.02
394 395 7.681939 TTTCAGTAGTTGTTTTCTGTCTTGT 57.318 32.000 0.00 0.00 0.00 3.16
395 396 7.681939 TTCAGTAGTTGTTTTCTGTCTTGTT 57.318 32.000 0.00 0.00 0.00 2.83
396 397 8.780846 TTCAGTAGTTGTTTTCTGTCTTGTTA 57.219 30.769 0.00 0.00 0.00 2.41
397 398 8.420374 TCAGTAGTTGTTTTCTGTCTTGTTAG 57.580 34.615 0.00 0.00 0.00 2.34
398 399 7.494625 TCAGTAGTTGTTTTCTGTCTTGTTAGG 59.505 37.037 0.00 0.00 0.00 2.69
399 400 6.766467 AGTAGTTGTTTTCTGTCTTGTTAGGG 59.234 38.462 0.00 0.00 0.00 3.53
400 401 5.506708 AGTTGTTTTCTGTCTTGTTAGGGT 58.493 37.500 0.00 0.00 0.00 4.34
401 402 5.949952 AGTTGTTTTCTGTCTTGTTAGGGTT 59.050 36.000 0.00 0.00 0.00 4.11
402 403 6.436218 AGTTGTTTTCTGTCTTGTTAGGGTTT 59.564 34.615 0.00 0.00 0.00 3.27
403 404 6.202516 TGTTTTCTGTCTTGTTAGGGTTTG 57.797 37.500 0.00 0.00 0.00 2.93
404 405 5.712917 TGTTTTCTGTCTTGTTAGGGTTTGT 59.287 36.000 0.00 0.00 0.00 2.83
405 406 5.828299 TTTCTGTCTTGTTAGGGTTTGTG 57.172 39.130 0.00 0.00 0.00 3.33
406 407 4.497291 TCTGTCTTGTTAGGGTTTGTGT 57.503 40.909 0.00 0.00 0.00 3.72
407 408 4.448210 TCTGTCTTGTTAGGGTTTGTGTC 58.552 43.478 0.00 0.00 0.00 3.67
408 409 3.547746 TGTCTTGTTAGGGTTTGTGTCC 58.452 45.455 0.00 0.00 0.00 4.02
409 410 3.201266 TGTCTTGTTAGGGTTTGTGTCCT 59.799 43.478 0.00 0.00 37.18 3.85
410 411 3.564225 GTCTTGTTAGGGTTTGTGTCCTG 59.436 47.826 0.00 0.00 34.75 3.86
411 412 1.975660 TGTTAGGGTTTGTGTCCTGC 58.024 50.000 0.00 0.00 34.75 4.85
412 413 1.493022 TGTTAGGGTTTGTGTCCTGCT 59.507 47.619 0.00 0.00 34.75 4.24
413 414 2.152016 GTTAGGGTTTGTGTCCTGCTC 58.848 52.381 0.00 0.00 34.75 4.26
414 415 1.429930 TAGGGTTTGTGTCCTGCTCA 58.570 50.000 0.00 0.00 34.75 4.26
415 416 0.109342 AGGGTTTGTGTCCTGCTCAG 59.891 55.000 0.00 0.00 31.11 3.35
425 426 3.292656 CTGCTCAGGAAGGCGAGA 58.707 61.111 0.00 0.00 0.00 4.04
426 427 1.153667 CTGCTCAGGAAGGCGAGAC 60.154 63.158 0.00 0.00 0.00 3.36
427 428 2.202676 GCTCAGGAAGGCGAGACG 60.203 66.667 0.00 0.00 0.00 4.18
428 429 2.492090 CTCAGGAAGGCGAGACGG 59.508 66.667 0.00 0.00 0.00 4.79
446 447 3.854669 CGGCGGCTCCCTGAAGAT 61.855 66.667 7.61 0.00 0.00 2.40
447 448 2.203126 GGCGGCTCCCTGAAGATG 60.203 66.667 0.00 0.00 0.00 2.90
448 449 2.203126 GCGGCTCCCTGAAGATGG 60.203 66.667 0.00 0.00 0.00 3.51
449 450 2.735772 GCGGCTCCCTGAAGATGGA 61.736 63.158 0.00 0.00 0.00 3.41
450 451 1.907739 CGGCTCCCTGAAGATGGAA 59.092 57.895 0.00 0.00 0.00 3.53
451 452 0.471617 CGGCTCCCTGAAGATGGAAT 59.528 55.000 0.00 0.00 0.00 3.01
452 453 1.694150 CGGCTCCCTGAAGATGGAATA 59.306 52.381 0.00 0.00 0.00 1.75
453 454 2.104792 CGGCTCCCTGAAGATGGAATAA 59.895 50.000 0.00 0.00 0.00 1.40
454 455 3.433598 CGGCTCCCTGAAGATGGAATAAA 60.434 47.826 0.00 0.00 0.00 1.40
455 456 4.140536 GGCTCCCTGAAGATGGAATAAAG 58.859 47.826 0.00 0.00 0.00 1.85
456 457 4.140536 GCTCCCTGAAGATGGAATAAAGG 58.859 47.826 0.00 0.00 0.00 3.11
457 458 4.385754 GCTCCCTGAAGATGGAATAAAGGT 60.386 45.833 0.00 0.00 0.00 3.50
458 459 5.372373 CTCCCTGAAGATGGAATAAAGGTC 58.628 45.833 0.00 0.00 0.00 3.85
459 460 5.039645 TCCCTGAAGATGGAATAAAGGTCT 58.960 41.667 0.00 0.00 0.00 3.85
460 461 5.131142 TCCCTGAAGATGGAATAAAGGTCTC 59.869 44.000 0.00 0.00 0.00 3.36
461 462 5.372373 CCTGAAGATGGAATAAAGGTCTCC 58.628 45.833 0.00 0.00 0.00 3.71
462 463 5.372373 CTGAAGATGGAATAAAGGTCTCCC 58.628 45.833 0.00 0.00 0.00 4.30
463 464 4.166144 TGAAGATGGAATAAAGGTCTCCCC 59.834 45.833 0.00 0.00 0.00 4.81
464 465 2.706190 AGATGGAATAAAGGTCTCCCCG 59.294 50.000 0.00 0.00 38.74 5.73
465 466 0.544697 TGGAATAAAGGTCTCCCCGC 59.455 55.000 0.00 0.00 38.74 6.13
466 467 0.179026 GGAATAAAGGTCTCCCCGCC 60.179 60.000 0.00 0.00 38.74 6.13
467 468 0.544697 GAATAAAGGTCTCCCCGCCA 59.455 55.000 0.00 0.00 38.74 5.69
468 469 0.996583 AATAAAGGTCTCCCCGCCAA 59.003 50.000 0.00 0.00 38.74 4.52
469 470 0.546598 ATAAAGGTCTCCCCGCCAAG 59.453 55.000 0.00 0.00 38.74 3.61
470 471 2.193087 TAAAGGTCTCCCCGCCAAGC 62.193 60.000 0.00 0.00 38.74 4.01
472 473 4.475135 GGTCTCCCCGCCAAGCTC 62.475 72.222 0.00 0.00 0.00 4.09
473 474 4.475135 GTCTCCCCGCCAAGCTCC 62.475 72.222 0.00 0.00 0.00 4.70
475 476 4.479993 CTCCCCGCCAAGCTCCAG 62.480 72.222 0.00 0.00 0.00 3.86
486 487 3.134127 GCTCCAGGCGGCGATTTT 61.134 61.111 12.98 0.00 0.00 1.82
487 488 1.817941 GCTCCAGGCGGCGATTTTA 60.818 57.895 12.98 0.00 0.00 1.52
488 489 1.776034 GCTCCAGGCGGCGATTTTAG 61.776 60.000 12.98 2.53 0.00 1.85
489 490 1.153249 TCCAGGCGGCGATTTTAGG 60.153 57.895 12.98 2.73 0.00 2.69
490 491 2.715624 CAGGCGGCGATTTTAGGC 59.284 61.111 12.98 0.00 0.00 3.93
496 497 3.592814 GCGATTTTAGGCGCCCCC 61.593 66.667 26.15 5.00 46.93 5.40
498 499 2.186826 CGATTTTAGGCGCCCCCTG 61.187 63.158 26.15 2.62 45.91 4.45
499 500 1.828224 GATTTTAGGCGCCCCCTGG 60.828 63.158 26.15 0.00 45.91 4.45
500 501 3.373932 ATTTTAGGCGCCCCCTGGG 62.374 63.158 26.15 5.50 45.91 4.45
518 519 3.860717 GCCAACGGCTGAAAATGC 58.139 55.556 0.00 0.00 46.69 3.56
519 520 1.290009 GCCAACGGCTGAAAATGCT 59.710 52.632 0.00 0.00 46.69 3.79
520 521 0.733909 GCCAACGGCTGAAAATGCTC 60.734 55.000 0.00 0.00 46.69 4.26
521 522 0.883833 CCAACGGCTGAAAATGCTCT 59.116 50.000 0.00 0.00 0.00 4.09
522 523 1.270550 CCAACGGCTGAAAATGCTCTT 59.729 47.619 0.00 0.00 0.00 2.85
523 524 2.487762 CCAACGGCTGAAAATGCTCTTA 59.512 45.455 0.00 0.00 0.00 2.10
524 525 3.492313 CAACGGCTGAAAATGCTCTTAC 58.508 45.455 0.00 0.00 0.00 2.34
525 526 2.084546 ACGGCTGAAAATGCTCTTACC 58.915 47.619 0.00 0.00 0.00 2.85
526 527 2.083774 CGGCTGAAAATGCTCTTACCA 58.916 47.619 0.00 0.00 0.00 3.25
527 528 2.684881 CGGCTGAAAATGCTCTTACCAT 59.315 45.455 0.00 0.00 0.00 3.55
528 529 3.488047 CGGCTGAAAATGCTCTTACCATG 60.488 47.826 0.00 0.00 0.00 3.66
529 530 3.696051 GGCTGAAAATGCTCTTACCATGA 59.304 43.478 0.00 0.00 0.00 3.07
530 531 4.158394 GGCTGAAAATGCTCTTACCATGAA 59.842 41.667 0.00 0.00 0.00 2.57
531 532 5.338365 GCTGAAAATGCTCTTACCATGAAG 58.662 41.667 0.00 0.00 0.00 3.02
532 533 5.124457 GCTGAAAATGCTCTTACCATGAAGA 59.876 40.000 0.00 0.00 34.30 2.87
533 534 6.183360 GCTGAAAATGCTCTTACCATGAAGAT 60.183 38.462 0.00 0.00 34.95 2.40
534 535 7.012704 GCTGAAAATGCTCTTACCATGAAGATA 59.987 37.037 0.00 0.00 34.95 1.98
535 536 8.806429 TGAAAATGCTCTTACCATGAAGATAA 57.194 30.769 0.00 0.00 34.95 1.75
536 537 8.896744 TGAAAATGCTCTTACCATGAAGATAAG 58.103 33.333 0.00 0.00 34.95 1.73
537 538 8.814038 AAAATGCTCTTACCATGAAGATAAGT 57.186 30.769 0.00 0.00 34.95 2.24
538 539 7.798596 AATGCTCTTACCATGAAGATAAGTG 57.201 36.000 0.00 0.00 34.95 3.16
539 540 5.674525 TGCTCTTACCATGAAGATAAGTGG 58.325 41.667 0.00 0.00 34.95 4.00
540 541 4.513318 GCTCTTACCATGAAGATAAGTGGC 59.487 45.833 0.00 3.51 34.95 5.01
541 542 4.693283 TCTTACCATGAAGATAAGTGGCG 58.307 43.478 0.00 0.00 35.11 5.69
542 543 4.404394 TCTTACCATGAAGATAAGTGGCGA 59.596 41.667 0.00 0.00 35.11 5.54
543 544 3.627395 ACCATGAAGATAAGTGGCGAA 57.373 42.857 0.00 0.00 35.11 4.70
544 545 3.950397 ACCATGAAGATAAGTGGCGAAA 58.050 40.909 0.00 0.00 35.11 3.46
545 546 3.689649 ACCATGAAGATAAGTGGCGAAAC 59.310 43.478 0.00 0.00 35.11 2.78
546 547 3.689161 CCATGAAGATAAGTGGCGAAACA 59.311 43.478 0.00 0.00 0.00 2.83
547 548 4.201851 CCATGAAGATAAGTGGCGAAACAG 60.202 45.833 0.00 0.00 0.00 3.16
548 549 4.265904 TGAAGATAAGTGGCGAAACAGA 57.734 40.909 0.00 0.00 0.00 3.41
549 550 4.832248 TGAAGATAAGTGGCGAAACAGAT 58.168 39.130 0.00 0.00 0.00 2.90
550 551 4.870426 TGAAGATAAGTGGCGAAACAGATC 59.130 41.667 0.00 0.00 0.00 2.75
551 552 4.471904 AGATAAGTGGCGAAACAGATCA 57.528 40.909 0.00 0.00 0.00 2.92
552 553 5.028549 AGATAAGTGGCGAAACAGATCAT 57.971 39.130 0.00 0.00 0.00 2.45
553 554 6.161855 AGATAAGTGGCGAAACAGATCATA 57.838 37.500 0.00 0.00 0.00 2.15
554 555 6.763355 AGATAAGTGGCGAAACAGATCATAT 58.237 36.000 0.00 0.00 0.00 1.78
555 556 7.220030 AGATAAGTGGCGAAACAGATCATATT 58.780 34.615 0.00 0.00 0.00 1.28
556 557 8.367911 AGATAAGTGGCGAAACAGATCATATTA 58.632 33.333 0.00 0.00 0.00 0.98
557 558 6.851222 AAGTGGCGAAACAGATCATATTAG 57.149 37.500 0.00 0.00 0.00 1.73
558 559 5.300752 AGTGGCGAAACAGATCATATTAGG 58.699 41.667 0.00 0.00 0.00 2.69
559 560 5.057149 GTGGCGAAACAGATCATATTAGGT 58.943 41.667 0.00 0.00 0.00 3.08
560 561 6.041637 AGTGGCGAAACAGATCATATTAGGTA 59.958 38.462 0.00 0.00 0.00 3.08
561 562 6.145696 GTGGCGAAACAGATCATATTAGGTAC 59.854 42.308 0.00 0.00 0.00 3.34
562 563 5.638234 GGCGAAACAGATCATATTAGGTACC 59.362 44.000 2.73 2.73 0.00 3.34
563 564 6.220930 GCGAAACAGATCATATTAGGTACCA 58.779 40.000 15.94 0.00 0.00 3.25
564 565 6.874134 GCGAAACAGATCATATTAGGTACCAT 59.126 38.462 15.94 1.90 0.00 3.55
565 566 7.387948 GCGAAACAGATCATATTAGGTACCATT 59.612 37.037 15.94 0.21 0.00 3.16
566 567 9.273016 CGAAACAGATCATATTAGGTACCATTT 57.727 33.333 15.94 0.00 0.00 2.32
568 569 7.986085 ACAGATCATATTAGGTACCATTTGC 57.014 36.000 15.94 0.00 0.00 3.68
569 570 7.749666 ACAGATCATATTAGGTACCATTTGCT 58.250 34.615 15.94 0.00 0.00 3.91
570 571 7.880195 ACAGATCATATTAGGTACCATTTGCTC 59.120 37.037 15.94 6.55 0.00 4.26
571 572 7.063898 CAGATCATATTAGGTACCATTTGCTCG 59.936 40.741 15.94 0.00 0.00 5.03
572 573 5.547465 TCATATTAGGTACCATTTGCTCGG 58.453 41.667 15.94 0.00 0.00 4.63
573 574 2.702592 TTAGGTACCATTTGCTCGGG 57.297 50.000 15.94 0.00 0.00 5.14
574 575 0.834612 TAGGTACCATTTGCTCGGGG 59.165 55.000 15.94 0.00 0.00 5.73
575 576 0.912487 AGGTACCATTTGCTCGGGGA 60.912 55.000 15.94 0.00 0.00 4.81
576 577 0.182775 GGTACCATTTGCTCGGGGAT 59.817 55.000 7.15 0.00 0.00 3.85
577 578 1.409661 GGTACCATTTGCTCGGGGATT 60.410 52.381 7.15 0.00 0.00 3.01
578 579 1.676006 GTACCATTTGCTCGGGGATTG 59.324 52.381 0.00 0.00 0.00 2.67
579 580 0.039618 ACCATTTGCTCGGGGATTGT 59.960 50.000 0.00 0.00 0.00 2.71
580 581 1.185315 CCATTTGCTCGGGGATTGTT 58.815 50.000 0.00 0.00 0.00 2.83
581 582 1.135024 CCATTTGCTCGGGGATTGTTG 60.135 52.381 0.00 0.00 0.00 3.33
582 583 0.532115 ATTTGCTCGGGGATTGTTGC 59.468 50.000 0.00 0.00 0.00 4.17
583 584 1.531739 TTTGCTCGGGGATTGTTGCC 61.532 55.000 0.00 0.00 0.00 4.52
584 585 2.044946 GCTCGGGGATTGTTGCCT 60.045 61.111 0.00 0.00 32.95 4.75
585 586 2.115291 GCTCGGGGATTGTTGCCTC 61.115 63.158 0.00 0.00 32.95 4.70
586 587 1.299648 CTCGGGGATTGTTGCCTCA 59.700 57.895 0.00 0.00 32.95 3.86
587 588 0.322456 CTCGGGGATTGTTGCCTCAA 60.322 55.000 0.00 0.00 32.95 3.02
588 589 0.111446 TCGGGGATTGTTGCCTCAAA 59.889 50.000 0.00 0.00 32.95 2.69
589 590 1.185315 CGGGGATTGTTGCCTCAAAT 58.815 50.000 0.00 0.00 32.95 2.32
590 591 1.550072 CGGGGATTGTTGCCTCAAATT 59.450 47.619 0.00 0.00 32.95 1.82
591 592 2.674747 CGGGGATTGTTGCCTCAAATTG 60.675 50.000 0.00 0.00 32.95 2.32
592 593 2.302733 GGGGATTGTTGCCTCAAATTGT 59.697 45.455 0.00 0.00 32.95 2.71
593 594 3.328505 GGGATTGTTGCCTCAAATTGTG 58.671 45.455 0.00 0.00 0.00 3.33
594 595 3.244181 GGGATTGTTGCCTCAAATTGTGT 60.244 43.478 0.00 0.00 0.00 3.72
595 596 3.989817 GGATTGTTGCCTCAAATTGTGTC 59.010 43.478 0.00 0.00 0.00 3.67
596 597 4.501229 GGATTGTTGCCTCAAATTGTGTCA 60.501 41.667 0.00 0.00 0.00 3.58
597 598 4.669206 TTGTTGCCTCAAATTGTGTCAT 57.331 36.364 0.00 0.00 0.00 3.06
598 599 4.241590 TGTTGCCTCAAATTGTGTCATC 57.758 40.909 0.00 0.00 0.00 2.92
599 600 3.890756 TGTTGCCTCAAATTGTGTCATCT 59.109 39.130 0.00 0.00 0.00 2.90
600 601 4.341806 TGTTGCCTCAAATTGTGTCATCTT 59.658 37.500 0.00 0.00 0.00 2.40
601 602 5.163426 TGTTGCCTCAAATTGTGTCATCTTT 60.163 36.000 0.00 0.00 0.00 2.52
602 603 4.873817 TGCCTCAAATTGTGTCATCTTTG 58.126 39.130 0.00 0.00 0.00 2.77
603 604 4.240096 GCCTCAAATTGTGTCATCTTTGG 58.760 43.478 0.00 0.00 31.20 3.28
604 605 4.262164 GCCTCAAATTGTGTCATCTTTGGT 60.262 41.667 0.00 0.00 31.20 3.67
605 606 5.739935 GCCTCAAATTGTGTCATCTTTGGTT 60.740 40.000 0.00 0.00 31.20 3.67
606 607 5.693104 CCTCAAATTGTGTCATCTTTGGTTG 59.307 40.000 0.00 0.00 31.20 3.77
715 716 6.597672 TCTTCTACAACAAACAAAGAGCTTCA 59.402 34.615 0.00 0.00 0.00 3.02
778 788 2.183679 AGAGTCGATTTTCCTGAGCCT 58.816 47.619 0.00 0.00 0.00 4.58
964 992 1.273267 ACTGCAGATCCACCAGACCTA 60.273 52.381 23.35 0.00 0.00 3.08
1253 1322 1.887198 CTTCCTCTACACGACCACTGT 59.113 52.381 0.00 0.00 0.00 3.55
1813 1966 2.457366 AGGTAAAGTGCGGAAGACTG 57.543 50.000 0.00 0.00 0.00 3.51
1848 2001 2.787680 CGGTCGAAGATTTGGTACGATC 59.212 50.000 0.00 0.00 40.67 3.69
2013 2194 1.427809 TATGAGCATGACTGGGGAGG 58.572 55.000 0.00 0.00 0.00 4.30
2036 2217 1.379044 CAGGGTGGCTGGGATTCAC 60.379 63.158 0.00 0.00 0.00 3.18
2219 2422 1.405121 GGGCGGTAGTGTTACCTTCAG 60.405 57.143 2.59 0.00 46.05 3.02
2326 2547 3.126858 CCGCTCAATTTGCTAGTGCTTAA 59.873 43.478 0.00 0.00 40.48 1.85
2356 2580 5.302568 TGCTTGGTTGATTTTCAGTTCAGAT 59.697 36.000 0.00 0.00 0.00 2.90
2471 2772 4.000988 TCGCTCTTCCTTTCCATAACAAC 58.999 43.478 0.00 0.00 0.00 3.32
2630 2937 9.132521 CTTTGAGCAAGTTCTTTTTATGTATGG 57.867 33.333 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.773328 TCGTGCATTTTAAAATCTTCTATCAAG 57.227 29.630 10.53 0.00 0.00 3.02
6 7 9.773328 CTCGTGCATTTTAAAATCTTCTATCAA 57.227 29.630 10.53 0.00 0.00 2.57
7 8 8.946085 ACTCGTGCATTTTAAAATCTTCTATCA 58.054 29.630 10.53 0.00 0.00 2.15
18 19 9.817809 AGATCTCTTATACTCGTGCATTTTAAA 57.182 29.630 0.00 0.00 0.00 1.52
21 22 9.988815 AATAGATCTCTTATACTCGTGCATTTT 57.011 29.630 0.00 0.00 0.00 1.82
22 23 9.416794 CAATAGATCTCTTATACTCGTGCATTT 57.583 33.333 0.00 0.00 0.00 2.32
23 24 7.543868 GCAATAGATCTCTTATACTCGTGCATT 59.456 37.037 0.00 0.00 0.00 3.56
24 25 7.032580 GCAATAGATCTCTTATACTCGTGCAT 58.967 38.462 0.00 0.00 0.00 3.96
25 26 6.016276 TGCAATAGATCTCTTATACTCGTGCA 60.016 38.462 0.00 0.00 33.29 4.57
26 27 6.382608 TGCAATAGATCTCTTATACTCGTGC 58.617 40.000 0.00 0.00 0.00 5.34
27 28 8.978564 ATTGCAATAGATCTCTTATACTCGTG 57.021 34.615 11.02 0.00 0.00 4.35
35 36 9.988815 GAGAAGGTAATTGCAATAGATCTCTTA 57.011 33.333 13.39 0.00 0.00 2.10
36 37 8.713036 AGAGAAGGTAATTGCAATAGATCTCTT 58.287 33.333 23.46 16.78 37.27 2.85
37 38 8.261349 AGAGAAGGTAATTGCAATAGATCTCT 57.739 34.615 23.46 23.46 36.13 3.10
74 75 9.959721 ACGCACCTAAATATTAATAGGATGATT 57.040 29.630 16.82 0.00 41.03 2.57
75 76 9.383519 CACGCACCTAAATATTAATAGGATGAT 57.616 33.333 16.82 4.76 41.03 2.45
76 77 8.372459 ACACGCACCTAAATATTAATAGGATGA 58.628 33.333 16.82 0.00 41.03 2.92
77 78 8.443160 CACACGCACCTAAATATTAATAGGATG 58.557 37.037 16.82 12.54 41.03 3.51
78 79 7.119262 GCACACGCACCTAAATATTAATAGGAT 59.881 37.037 16.82 2.76 41.54 3.24
79 80 6.425721 GCACACGCACCTAAATATTAATAGGA 59.574 38.462 16.82 0.00 41.54 2.94
80 81 6.426937 AGCACACGCACCTAAATATTAATAGG 59.573 38.462 10.50 10.50 42.27 2.57
81 82 7.421530 AGCACACGCACCTAAATATTAATAG 57.578 36.000 1.02 0.00 42.27 1.73
82 83 7.795482 AAGCACACGCACCTAAATATTAATA 57.205 32.000 0.00 0.00 42.27 0.98
83 84 6.693315 AAGCACACGCACCTAAATATTAAT 57.307 33.333 0.00 0.00 42.27 1.40
84 85 7.042950 TCTAAGCACACGCACCTAAATATTAA 58.957 34.615 0.00 0.00 42.27 1.40
85 86 6.575267 TCTAAGCACACGCACCTAAATATTA 58.425 36.000 0.00 0.00 42.27 0.98
86 87 5.424757 TCTAAGCACACGCACCTAAATATT 58.575 37.500 0.00 0.00 42.27 1.28
87 88 5.018539 TCTAAGCACACGCACCTAAATAT 57.981 39.130 0.00 0.00 42.27 1.28
88 89 4.459390 TCTAAGCACACGCACCTAAATA 57.541 40.909 0.00 0.00 42.27 1.40
89 90 3.328382 TCTAAGCACACGCACCTAAAT 57.672 42.857 0.00 0.00 42.27 1.40
90 91 2.823924 TCTAAGCACACGCACCTAAA 57.176 45.000 0.00 0.00 42.27 1.85
91 92 2.823924 TTCTAAGCACACGCACCTAA 57.176 45.000 0.00 0.00 42.27 2.69
92 93 3.328382 AATTCTAAGCACACGCACCTA 57.672 42.857 0.00 0.00 42.27 3.08
93 94 2.185004 AATTCTAAGCACACGCACCT 57.815 45.000 0.00 0.00 42.27 4.00
94 95 4.342772 CAATAATTCTAAGCACACGCACC 58.657 43.478 0.00 0.00 42.27 5.01
95 96 3.786048 GCAATAATTCTAAGCACACGCAC 59.214 43.478 0.00 0.00 42.27 5.34
96 97 3.689161 AGCAATAATTCTAAGCACACGCA 59.311 39.130 0.00 0.00 42.27 5.24
97 98 4.278678 AGCAATAATTCTAAGCACACGC 57.721 40.909 0.00 0.00 38.99 5.34
98 99 5.065218 AGGAAGCAATAATTCTAAGCACACG 59.935 40.000 0.00 0.00 0.00 4.49
99 100 6.261118 CAGGAAGCAATAATTCTAAGCACAC 58.739 40.000 0.00 0.00 0.00 3.82
100 101 5.163622 GCAGGAAGCAATAATTCTAAGCACA 60.164 40.000 0.00 0.00 44.79 4.57
101 102 5.277047 GCAGGAAGCAATAATTCTAAGCAC 58.723 41.667 0.00 0.00 44.79 4.40
102 103 4.035558 CGCAGGAAGCAATAATTCTAAGCA 59.964 41.667 0.00 0.00 46.13 3.91
103 104 4.035675 ACGCAGGAAGCAATAATTCTAAGC 59.964 41.667 0.00 0.00 46.13 3.09
104 105 5.294306 TGACGCAGGAAGCAATAATTCTAAG 59.706 40.000 0.00 0.00 46.13 2.18
105 106 5.064707 GTGACGCAGGAAGCAATAATTCTAA 59.935 40.000 0.00 0.00 46.13 2.10
106 107 4.570772 GTGACGCAGGAAGCAATAATTCTA 59.429 41.667 0.00 0.00 46.13 2.10
107 108 3.375299 GTGACGCAGGAAGCAATAATTCT 59.625 43.478 0.00 0.00 46.13 2.40
108 109 3.375299 AGTGACGCAGGAAGCAATAATTC 59.625 43.478 0.00 0.00 46.13 2.17
109 110 3.347216 AGTGACGCAGGAAGCAATAATT 58.653 40.909 0.00 0.00 46.13 1.40
110 111 2.991250 AGTGACGCAGGAAGCAATAAT 58.009 42.857 0.00 0.00 46.13 1.28
111 112 2.472695 AGTGACGCAGGAAGCAATAA 57.527 45.000 0.00 0.00 46.13 1.40
112 113 3.603158 TTAGTGACGCAGGAAGCAATA 57.397 42.857 0.00 0.00 46.13 1.90
113 114 2.472695 TTAGTGACGCAGGAAGCAAT 57.527 45.000 0.00 0.00 46.13 3.56
114 115 2.143122 CTTTAGTGACGCAGGAAGCAA 58.857 47.619 0.00 0.00 46.13 3.91
115 116 1.070134 ACTTTAGTGACGCAGGAAGCA 59.930 47.619 0.00 0.00 46.13 3.91
116 117 1.797025 ACTTTAGTGACGCAGGAAGC 58.203 50.000 0.00 0.00 40.87 3.86
128 129 3.390311 ACGAGGGGAAAGAACACTTTAGT 59.610 43.478 0.00 0.00 34.54 2.24
129 130 4.004196 ACGAGGGGAAAGAACACTTTAG 57.996 45.455 0.00 0.00 34.54 1.85
130 131 5.549742 TTACGAGGGGAAAGAACACTTTA 57.450 39.130 0.00 0.00 34.54 1.85
131 132 4.426736 TTACGAGGGGAAAGAACACTTT 57.573 40.909 0.00 0.00 36.69 2.66
132 133 4.635699 ATTACGAGGGGAAAGAACACTT 57.364 40.909 0.00 0.00 0.00 3.16
133 134 4.635699 AATTACGAGGGGAAAGAACACT 57.364 40.909 0.00 0.00 0.00 3.55
134 135 6.346896 AGATAATTACGAGGGGAAAGAACAC 58.653 40.000 0.00 0.00 0.00 3.32
135 136 6.555463 AGATAATTACGAGGGGAAAGAACA 57.445 37.500 0.00 0.00 0.00 3.18
136 137 6.238402 GCAAGATAATTACGAGGGGAAAGAAC 60.238 42.308 0.00 0.00 0.00 3.01
137 138 5.820947 GCAAGATAATTACGAGGGGAAAGAA 59.179 40.000 0.00 0.00 0.00 2.52
138 139 5.130477 AGCAAGATAATTACGAGGGGAAAGA 59.870 40.000 0.00 0.00 0.00 2.52
139 140 5.368989 AGCAAGATAATTACGAGGGGAAAG 58.631 41.667 0.00 0.00 0.00 2.62
140 141 5.367945 AGCAAGATAATTACGAGGGGAAA 57.632 39.130 0.00 0.00 0.00 3.13
141 142 5.364446 TGTAGCAAGATAATTACGAGGGGAA 59.636 40.000 0.00 0.00 0.00 3.97
142 143 4.897076 TGTAGCAAGATAATTACGAGGGGA 59.103 41.667 0.00 0.00 0.00 4.81
143 144 5.209818 TGTAGCAAGATAATTACGAGGGG 57.790 43.478 0.00 0.00 0.00 4.79
144 145 6.455647 TGATGTAGCAAGATAATTACGAGGG 58.544 40.000 0.00 0.00 0.00 4.30
145 146 7.371159 TCTGATGTAGCAAGATAATTACGAGG 58.629 38.462 0.00 0.00 0.00 4.63
146 147 8.978564 ATCTGATGTAGCAAGATAATTACGAG 57.021 34.615 0.00 0.00 0.00 4.18
147 148 8.029522 GGATCTGATGTAGCAAGATAATTACGA 58.970 37.037 0.00 0.00 0.00 3.43
148 149 7.276658 GGGATCTGATGTAGCAAGATAATTACG 59.723 40.741 0.00 0.00 0.00 3.18
149 150 7.550906 GGGGATCTGATGTAGCAAGATAATTAC 59.449 40.741 0.00 0.00 0.00 1.89
150 151 7.311297 GGGGGATCTGATGTAGCAAGATAATTA 60.311 40.741 0.00 0.00 0.00 1.40
151 152 6.479884 GGGGATCTGATGTAGCAAGATAATT 58.520 40.000 0.00 0.00 0.00 1.40
152 153 5.045286 GGGGGATCTGATGTAGCAAGATAAT 60.045 44.000 0.00 0.00 0.00 1.28
153 154 4.287067 GGGGGATCTGATGTAGCAAGATAA 59.713 45.833 0.00 0.00 0.00 1.75
154 155 3.840666 GGGGGATCTGATGTAGCAAGATA 59.159 47.826 0.00 0.00 0.00 1.98
155 156 2.641815 GGGGGATCTGATGTAGCAAGAT 59.358 50.000 0.00 0.00 0.00 2.40
156 157 2.050144 GGGGGATCTGATGTAGCAAGA 58.950 52.381 0.00 0.00 0.00 3.02
157 158 2.038295 GAGGGGGATCTGATGTAGCAAG 59.962 54.545 0.00 0.00 0.00 4.01
158 159 2.050144 GAGGGGGATCTGATGTAGCAA 58.950 52.381 0.00 0.00 0.00 3.91
159 160 1.722034 GAGGGGGATCTGATGTAGCA 58.278 55.000 0.00 0.00 0.00 3.49
160 161 0.980423 GGAGGGGGATCTGATGTAGC 59.020 60.000 0.00 0.00 0.00 3.58
161 162 1.150986 AGGGAGGGGGATCTGATGTAG 59.849 57.143 0.00 0.00 0.00 2.74
162 163 1.150135 GAGGGAGGGGGATCTGATGTA 59.850 57.143 0.00 0.00 0.00 2.29
163 164 0.104725 GAGGGAGGGGGATCTGATGT 60.105 60.000 0.00 0.00 0.00 3.06
164 165 0.193069 AGAGGGAGGGGGATCTGATG 59.807 60.000 0.00 0.00 0.00 3.07
165 166 0.955752 AAGAGGGAGGGGGATCTGAT 59.044 55.000 0.00 0.00 0.00 2.90
166 167 0.030705 CAAGAGGGAGGGGGATCTGA 60.031 60.000 0.00 0.00 0.00 3.27
167 168 0.030705 TCAAGAGGGAGGGGGATCTG 60.031 60.000 0.00 0.00 0.00 2.90
168 169 0.030603 GTCAAGAGGGAGGGGGATCT 60.031 60.000 0.00 0.00 0.00 2.75
169 170 0.326618 TGTCAAGAGGGAGGGGGATC 60.327 60.000 0.00 0.00 0.00 3.36
170 171 0.121197 TTGTCAAGAGGGAGGGGGAT 59.879 55.000 0.00 0.00 0.00 3.85
171 172 0.840722 GTTGTCAAGAGGGAGGGGGA 60.841 60.000 0.00 0.00 0.00 4.81
172 173 1.685820 GTTGTCAAGAGGGAGGGGG 59.314 63.158 0.00 0.00 0.00 5.40
173 174 0.842467 AGGTTGTCAAGAGGGAGGGG 60.842 60.000 0.00 0.00 0.00 4.79
174 175 1.068121 AAGGTTGTCAAGAGGGAGGG 58.932 55.000 0.00 0.00 0.00 4.30
175 176 2.355209 GCTAAGGTTGTCAAGAGGGAGG 60.355 54.545 0.00 0.00 0.00 4.30
176 177 2.303022 TGCTAAGGTTGTCAAGAGGGAG 59.697 50.000 0.00 0.00 0.00 4.30
177 178 2.334977 TGCTAAGGTTGTCAAGAGGGA 58.665 47.619 0.00 0.00 0.00 4.20
178 179 2.859165 TGCTAAGGTTGTCAAGAGGG 57.141 50.000 0.00 0.00 0.00 4.30
179 180 5.006386 AGAAATGCTAAGGTTGTCAAGAGG 58.994 41.667 0.00 0.00 0.00 3.69
180 181 6.650807 TGTAGAAATGCTAAGGTTGTCAAGAG 59.349 38.462 0.00 0.00 0.00 2.85
181 182 6.530120 TGTAGAAATGCTAAGGTTGTCAAGA 58.470 36.000 0.00 0.00 0.00 3.02
182 183 6.801539 TGTAGAAATGCTAAGGTTGTCAAG 57.198 37.500 0.00 0.00 0.00 3.02
183 184 6.016610 GGTTGTAGAAATGCTAAGGTTGTCAA 60.017 38.462 0.00 0.00 0.00 3.18
184 185 5.472137 GGTTGTAGAAATGCTAAGGTTGTCA 59.528 40.000 0.00 0.00 0.00 3.58
185 186 5.472137 TGGTTGTAGAAATGCTAAGGTTGTC 59.528 40.000 0.00 0.00 0.00 3.18
186 187 5.381757 TGGTTGTAGAAATGCTAAGGTTGT 58.618 37.500 0.00 0.00 0.00 3.32
187 188 5.957842 TGGTTGTAGAAATGCTAAGGTTG 57.042 39.130 0.00 0.00 0.00 3.77
188 189 6.068670 ACTTGGTTGTAGAAATGCTAAGGTT 58.931 36.000 0.00 0.00 0.00 3.50
189 190 5.631119 ACTTGGTTGTAGAAATGCTAAGGT 58.369 37.500 0.00 0.00 0.00 3.50
190 191 6.381801 CAACTTGGTTGTAGAAATGCTAAGG 58.618 40.000 2.63 0.00 38.56 2.69
205 206 4.336993 TGAAGCGAATACAACAACTTGGTT 59.663 37.500 0.00 0.00 0.00 3.67
206 207 3.880490 TGAAGCGAATACAACAACTTGGT 59.120 39.130 0.00 0.00 0.00 3.67
207 208 4.024048 AGTGAAGCGAATACAACAACTTGG 60.024 41.667 0.00 0.00 0.00 3.61
208 209 5.050091 AGAGTGAAGCGAATACAACAACTTG 60.050 40.000 0.00 0.00 0.00 3.16
209 210 5.057149 AGAGTGAAGCGAATACAACAACTT 58.943 37.500 0.00 0.00 0.00 2.66
210 211 4.632153 AGAGTGAAGCGAATACAACAACT 58.368 39.130 0.00 0.00 0.00 3.16
211 212 4.992381 AGAGTGAAGCGAATACAACAAC 57.008 40.909 0.00 0.00 0.00 3.32
212 213 4.149922 CGAAGAGTGAAGCGAATACAACAA 59.850 41.667 0.00 0.00 0.00 2.83
213 214 3.673338 CGAAGAGTGAAGCGAATACAACA 59.327 43.478 0.00 0.00 0.00 3.33
214 215 3.673809 ACGAAGAGTGAAGCGAATACAAC 59.326 43.478 0.00 0.00 0.00 3.32
215 216 3.909430 ACGAAGAGTGAAGCGAATACAA 58.091 40.909 0.00 0.00 0.00 2.41
216 217 3.570926 ACGAAGAGTGAAGCGAATACA 57.429 42.857 0.00 0.00 0.00 2.29
217 218 3.303760 GGAACGAAGAGTGAAGCGAATAC 59.696 47.826 0.00 0.00 0.00 1.89
218 219 3.192844 AGGAACGAAGAGTGAAGCGAATA 59.807 43.478 0.00 0.00 0.00 1.75
219 220 2.028930 AGGAACGAAGAGTGAAGCGAAT 60.029 45.455 0.00 0.00 0.00 3.34
220 221 1.340248 AGGAACGAAGAGTGAAGCGAA 59.660 47.619 0.00 0.00 0.00 4.70
221 222 0.959553 AGGAACGAAGAGTGAAGCGA 59.040 50.000 0.00 0.00 0.00 4.93
222 223 1.341606 GAGGAACGAAGAGTGAAGCG 58.658 55.000 0.00 0.00 0.00 4.68
223 224 1.273886 AGGAGGAACGAAGAGTGAAGC 59.726 52.381 0.00 0.00 0.00 3.86
224 225 2.094442 GGAGGAGGAACGAAGAGTGAAG 60.094 54.545 0.00 0.00 0.00 3.02
225 226 1.893801 GGAGGAGGAACGAAGAGTGAA 59.106 52.381 0.00 0.00 0.00 3.18
226 227 1.075698 AGGAGGAGGAACGAAGAGTGA 59.924 52.381 0.00 0.00 0.00 3.41
227 228 1.474879 GAGGAGGAGGAACGAAGAGTG 59.525 57.143 0.00 0.00 0.00 3.51
228 229 1.617533 GGAGGAGGAGGAACGAAGAGT 60.618 57.143 0.00 0.00 0.00 3.24
229 230 1.107945 GGAGGAGGAGGAACGAAGAG 58.892 60.000 0.00 0.00 0.00 2.85
230 231 0.408309 TGGAGGAGGAGGAACGAAGA 59.592 55.000 0.00 0.00 0.00 2.87
231 232 1.205893 CTTGGAGGAGGAGGAACGAAG 59.794 57.143 0.00 0.00 0.00 3.79
232 233 1.203137 TCTTGGAGGAGGAGGAACGAA 60.203 52.381 0.00 0.00 0.00 3.85
233 234 0.408309 TCTTGGAGGAGGAGGAACGA 59.592 55.000 0.00 0.00 0.00 3.85
234 235 1.267121 TTCTTGGAGGAGGAGGAACG 58.733 55.000 0.00 0.00 0.00 3.95
235 236 2.907042 TCTTTCTTGGAGGAGGAGGAAC 59.093 50.000 0.00 0.00 0.00 3.62
236 237 3.275848 TCTTTCTTGGAGGAGGAGGAA 57.724 47.619 0.00 0.00 0.00 3.36
237 238 3.275848 TTCTTTCTTGGAGGAGGAGGA 57.724 47.619 0.00 0.00 0.00 3.71
238 239 3.329225 ACTTTCTTTCTTGGAGGAGGAGG 59.671 47.826 0.00 0.00 0.00 4.30
239 240 4.632327 ACTTTCTTTCTTGGAGGAGGAG 57.368 45.455 0.00 0.00 0.00 3.69
240 241 5.013183 CCTAACTTTCTTTCTTGGAGGAGGA 59.987 44.000 0.00 0.00 0.00 3.71
241 242 5.249420 CCTAACTTTCTTTCTTGGAGGAGG 58.751 45.833 0.00 0.00 0.00 4.30
242 243 5.221945 ACCCTAACTTTCTTTCTTGGAGGAG 60.222 44.000 0.00 0.00 0.00 3.69
243 244 4.663592 ACCCTAACTTTCTTTCTTGGAGGA 59.336 41.667 0.00 0.00 0.00 3.71
244 245 4.986783 ACCCTAACTTTCTTTCTTGGAGG 58.013 43.478 0.00 0.00 0.00 4.30
245 246 6.961360 AAACCCTAACTTTCTTTCTTGGAG 57.039 37.500 0.00 0.00 0.00 3.86
246 247 7.013942 GCTAAAACCCTAACTTTCTTTCTTGGA 59.986 37.037 0.00 0.00 0.00 3.53
247 248 7.145985 GCTAAAACCCTAACTTTCTTTCTTGG 58.854 38.462 0.00 0.00 0.00 3.61
248 249 7.014326 AGGCTAAAACCCTAACTTTCTTTCTTG 59.986 37.037 0.00 0.00 0.00 3.02
249 250 7.067421 AGGCTAAAACCCTAACTTTCTTTCTT 58.933 34.615 0.00 0.00 0.00 2.52
250 251 6.611785 AGGCTAAAACCCTAACTTTCTTTCT 58.388 36.000 0.00 0.00 0.00 2.52
251 252 6.715718 AGAGGCTAAAACCCTAACTTTCTTTC 59.284 38.462 0.00 0.00 31.41 2.62
252 253 6.611785 AGAGGCTAAAACCCTAACTTTCTTT 58.388 36.000 0.00 0.00 31.41 2.52
253 254 6.202202 AGAGGCTAAAACCCTAACTTTCTT 57.798 37.500 0.00 0.00 31.41 2.52
254 255 5.569026 CGAGAGGCTAAAACCCTAACTTTCT 60.569 44.000 0.00 0.00 31.41 2.52
255 256 4.630505 CGAGAGGCTAAAACCCTAACTTTC 59.369 45.833 0.00 0.00 31.41 2.62
256 257 4.041321 ACGAGAGGCTAAAACCCTAACTTT 59.959 41.667 0.00 0.00 31.41 2.66
257 258 3.581770 ACGAGAGGCTAAAACCCTAACTT 59.418 43.478 0.00 0.00 31.41 2.66
258 259 3.171528 ACGAGAGGCTAAAACCCTAACT 58.828 45.455 0.00 0.00 31.41 2.24
259 260 3.519579 GACGAGAGGCTAAAACCCTAAC 58.480 50.000 0.00 0.00 34.96 2.34
260 261 2.165030 CGACGAGAGGCTAAAACCCTAA 59.835 50.000 0.00 0.00 36.51 2.69
261 262 1.747355 CGACGAGAGGCTAAAACCCTA 59.253 52.381 0.00 0.00 36.51 3.53
262 263 0.531200 CGACGAGAGGCTAAAACCCT 59.469 55.000 0.00 0.00 36.51 4.34
263 264 0.459759 CCGACGAGAGGCTAAAACCC 60.460 60.000 0.00 0.00 36.51 4.11
264 265 3.046280 CCGACGAGAGGCTAAAACC 57.954 57.895 0.00 0.00 36.51 3.27
303 304 0.034283 ACCCTAGAGTCACCGGAGAC 60.034 60.000 22.82 22.82 38.81 3.36
304 305 0.255318 GACCCTAGAGTCACCGGAGA 59.745 60.000 9.46 1.33 36.73 3.71
305 306 0.034380 TGACCCTAGAGTCACCGGAG 60.034 60.000 9.46 0.00 41.78 4.63
306 307 2.081078 TGACCCTAGAGTCACCGGA 58.919 57.895 9.46 0.00 41.78 5.14
307 308 4.757773 TGACCCTAGAGTCACCGG 57.242 61.111 2.47 0.00 41.78 5.28
312 313 1.411651 GCCCCCATGACCCTAGAGTC 61.412 65.000 0.00 0.00 37.28 3.36
313 314 1.384643 GCCCCCATGACCCTAGAGT 60.385 63.158 0.00 0.00 0.00 3.24
314 315 2.511452 CGCCCCCATGACCCTAGAG 61.511 68.421 0.00 0.00 0.00 2.43
315 316 2.445845 CGCCCCCATGACCCTAGA 60.446 66.667 0.00 0.00 0.00 2.43
316 317 4.256180 GCGCCCCCATGACCCTAG 62.256 72.222 0.00 0.00 0.00 3.02
331 332 2.745884 TTGGCAAGATCCACCGCG 60.746 61.111 0.00 0.00 35.50 6.46
332 333 1.675641 ACTTGGCAAGATCCACCGC 60.676 57.895 32.50 0.00 35.50 5.68
333 334 1.926511 GCACTTGGCAAGATCCACCG 61.927 60.000 32.50 12.36 43.97 4.94
334 335 1.885871 GCACTTGGCAAGATCCACC 59.114 57.895 32.50 10.27 43.97 4.61
359 360 3.636153 ACTACTGAAAATGGAGCCCTC 57.364 47.619 0.00 0.00 0.00 4.30
360 361 3.074538 ACAACTACTGAAAATGGAGCCCT 59.925 43.478 0.00 0.00 0.00 5.19
361 362 3.421844 ACAACTACTGAAAATGGAGCCC 58.578 45.455 0.00 0.00 0.00 5.19
362 363 5.453567 AAACAACTACTGAAAATGGAGCC 57.546 39.130 0.00 0.00 0.00 4.70
363 364 6.638468 CAGAAAACAACTACTGAAAATGGAGC 59.362 38.462 0.00 0.00 32.90 4.70
364 365 7.707104 ACAGAAAACAACTACTGAAAATGGAG 58.293 34.615 0.00 0.00 34.88 3.86
365 366 7.556275 AGACAGAAAACAACTACTGAAAATGGA 59.444 33.333 0.00 0.00 34.88 3.41
366 367 7.707104 AGACAGAAAACAACTACTGAAAATGG 58.293 34.615 0.00 0.00 34.88 3.16
367 368 9.013490 CAAGACAGAAAACAACTACTGAAAATG 57.987 33.333 0.00 0.00 34.88 2.32
368 369 8.739972 ACAAGACAGAAAACAACTACTGAAAAT 58.260 29.630 0.00 0.00 34.88 1.82
369 370 8.106247 ACAAGACAGAAAACAACTACTGAAAA 57.894 30.769 0.00 0.00 34.88 2.29
370 371 7.681939 ACAAGACAGAAAACAACTACTGAAA 57.318 32.000 0.00 0.00 34.88 2.69
371 372 7.681939 AACAAGACAGAAAACAACTACTGAA 57.318 32.000 0.00 0.00 34.88 3.02
372 373 7.494625 CCTAACAAGACAGAAAACAACTACTGA 59.505 37.037 0.00 0.00 34.88 3.41
373 374 7.254795 CCCTAACAAGACAGAAAACAACTACTG 60.255 40.741 0.00 0.00 36.58 2.74
374 375 6.766467 CCCTAACAAGACAGAAAACAACTACT 59.234 38.462 0.00 0.00 0.00 2.57
375 376 6.541278 ACCCTAACAAGACAGAAAACAACTAC 59.459 38.462 0.00 0.00 0.00 2.73
376 377 6.655930 ACCCTAACAAGACAGAAAACAACTA 58.344 36.000 0.00 0.00 0.00 2.24
377 378 5.506708 ACCCTAACAAGACAGAAAACAACT 58.493 37.500 0.00 0.00 0.00 3.16
378 379 5.830000 ACCCTAACAAGACAGAAAACAAC 57.170 39.130 0.00 0.00 0.00 3.32
379 380 6.209788 ACAAACCCTAACAAGACAGAAAACAA 59.790 34.615 0.00 0.00 0.00 2.83
380 381 5.712917 ACAAACCCTAACAAGACAGAAAACA 59.287 36.000 0.00 0.00 0.00 2.83
381 382 6.033966 CACAAACCCTAACAAGACAGAAAAC 58.966 40.000 0.00 0.00 0.00 2.43
382 383 5.712917 ACACAAACCCTAACAAGACAGAAAA 59.287 36.000 0.00 0.00 0.00 2.29
383 384 5.258051 ACACAAACCCTAACAAGACAGAAA 58.742 37.500 0.00 0.00 0.00 2.52
384 385 4.850680 ACACAAACCCTAACAAGACAGAA 58.149 39.130 0.00 0.00 0.00 3.02
385 386 4.448210 GACACAAACCCTAACAAGACAGA 58.552 43.478 0.00 0.00 0.00 3.41
386 387 3.564225 GGACACAAACCCTAACAAGACAG 59.436 47.826 0.00 0.00 0.00 3.51
387 388 3.201266 AGGACACAAACCCTAACAAGACA 59.799 43.478 0.00 0.00 0.00 3.41
388 389 3.564225 CAGGACACAAACCCTAACAAGAC 59.436 47.826 0.00 0.00 0.00 3.01
389 390 3.815809 CAGGACACAAACCCTAACAAGA 58.184 45.455 0.00 0.00 0.00 3.02
390 391 2.293399 GCAGGACACAAACCCTAACAAG 59.707 50.000 0.00 0.00 0.00 3.16
391 392 2.092103 AGCAGGACACAAACCCTAACAA 60.092 45.455 0.00 0.00 0.00 2.83
392 393 1.493022 AGCAGGACACAAACCCTAACA 59.507 47.619 0.00 0.00 0.00 2.41
393 394 2.152016 GAGCAGGACACAAACCCTAAC 58.848 52.381 0.00 0.00 0.00 2.34
394 395 1.771854 TGAGCAGGACACAAACCCTAA 59.228 47.619 0.00 0.00 0.00 2.69
395 396 1.347707 CTGAGCAGGACACAAACCCTA 59.652 52.381 0.00 0.00 0.00 3.53
396 397 0.109342 CTGAGCAGGACACAAACCCT 59.891 55.000 0.00 0.00 0.00 4.34
397 398 2.633860 CTGAGCAGGACACAAACCC 58.366 57.895 0.00 0.00 0.00 4.11
408 409 1.153667 GTCTCGCCTTCCTGAGCAG 60.154 63.158 0.00 0.00 32.20 4.24
409 410 2.973899 GTCTCGCCTTCCTGAGCA 59.026 61.111 0.00 0.00 32.20 4.26
410 411 2.202676 CGTCTCGCCTTCCTGAGC 60.203 66.667 0.00 0.00 32.20 4.26
411 412 2.492090 CCGTCTCGCCTTCCTGAG 59.508 66.667 0.00 0.00 0.00 3.35
412 413 3.760035 GCCGTCTCGCCTTCCTGA 61.760 66.667 0.00 0.00 0.00 3.86
429 430 3.854669 ATCTTCAGGGAGCCGCCG 61.855 66.667 0.00 0.00 37.63 6.46
430 431 2.203126 CATCTTCAGGGAGCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
431 432 2.203126 CCATCTTCAGGGAGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
432 433 0.471617 ATTCCATCTTCAGGGAGCCG 59.528 55.000 0.00 0.00 34.02 5.52
433 434 3.864789 TTATTCCATCTTCAGGGAGCC 57.135 47.619 0.00 0.00 34.02 4.70
434 435 4.140536 CCTTTATTCCATCTTCAGGGAGC 58.859 47.826 0.00 0.00 34.02 4.70
435 436 5.131809 AGACCTTTATTCCATCTTCAGGGAG 59.868 44.000 0.00 0.00 34.02 4.30
436 437 5.039645 AGACCTTTATTCCATCTTCAGGGA 58.960 41.667 0.00 0.00 0.00 4.20
437 438 5.372373 GAGACCTTTATTCCATCTTCAGGG 58.628 45.833 0.00 0.00 0.00 4.45
438 439 5.372373 GGAGACCTTTATTCCATCTTCAGG 58.628 45.833 0.00 0.00 0.00 3.86
456 457 4.475135 GGAGCTTGGCGGGGAGAC 62.475 72.222 0.00 0.00 0.00 3.36
458 459 4.479993 CTGGAGCTTGGCGGGGAG 62.480 72.222 0.00 0.00 0.00 4.30
466 467 4.845580 ATCGCCGCCTGGAGCTTG 62.846 66.667 0.00 0.00 40.39 4.01
467 468 3.628646 AAATCGCCGCCTGGAGCTT 62.629 57.895 0.00 0.00 40.39 3.74
468 469 2.252072 TAAAATCGCCGCCTGGAGCT 62.252 55.000 0.00 0.00 40.39 4.09
469 470 1.776034 CTAAAATCGCCGCCTGGAGC 61.776 60.000 0.00 0.00 37.49 4.70
470 471 1.160329 CCTAAAATCGCCGCCTGGAG 61.160 60.000 0.00 0.00 37.49 3.86
471 472 1.153249 CCTAAAATCGCCGCCTGGA 60.153 57.895 0.00 0.00 37.49 3.86
472 473 2.834618 GCCTAAAATCGCCGCCTGG 61.835 63.158 0.00 0.00 38.77 4.45
473 474 2.715624 GCCTAAAATCGCCGCCTG 59.284 61.111 0.00 0.00 0.00 4.85
474 475 2.895372 CGCCTAAAATCGCCGCCT 60.895 61.111 0.00 0.00 0.00 5.52
475 476 4.607606 GCGCCTAAAATCGCCGCC 62.608 66.667 0.00 0.00 45.01 6.13
480 481 2.186826 CAGGGGGCGCCTAAAATCG 61.187 63.158 28.56 5.85 0.00 3.34
481 482 1.828224 CCAGGGGGCGCCTAAAATC 60.828 63.158 28.56 8.16 0.00 2.17
482 483 2.278738 CCAGGGGGCGCCTAAAAT 59.721 61.111 28.56 5.30 0.00 1.82
483 484 4.055227 CCCAGGGGGCGCCTAAAA 62.055 66.667 28.56 0.00 35.35 1.52
502 503 0.883833 AGAGCATTTTCAGCCGTTGG 59.116 50.000 0.00 0.00 0.00 3.77
503 504 2.712057 AAGAGCATTTTCAGCCGTTG 57.288 45.000 0.00 0.00 0.00 4.10
504 505 2.488153 GGTAAGAGCATTTTCAGCCGTT 59.512 45.455 0.00 0.00 0.00 4.44
505 506 2.084546 GGTAAGAGCATTTTCAGCCGT 58.915 47.619 0.00 0.00 0.00 5.68
506 507 2.083774 TGGTAAGAGCATTTTCAGCCG 58.916 47.619 0.00 0.00 0.00 5.52
507 508 3.696051 TCATGGTAAGAGCATTTTCAGCC 59.304 43.478 0.00 0.00 33.46 4.85
508 509 4.970662 TCATGGTAAGAGCATTTTCAGC 57.029 40.909 0.00 0.00 33.46 4.26
509 510 6.748333 TCTTCATGGTAAGAGCATTTTCAG 57.252 37.500 0.00 0.00 33.46 3.02
510 511 8.806429 TTATCTTCATGGTAAGAGCATTTTCA 57.194 30.769 3.55 0.00 38.81 2.69
511 512 8.897752 ACTTATCTTCATGGTAAGAGCATTTTC 58.102 33.333 12.05 0.00 38.81 2.29
512 513 8.680903 CACTTATCTTCATGGTAAGAGCATTTT 58.319 33.333 12.05 0.00 38.81 1.82
513 514 7.284034 CCACTTATCTTCATGGTAAGAGCATTT 59.716 37.037 12.05 0.00 38.81 2.32
514 515 6.769822 CCACTTATCTTCATGGTAAGAGCATT 59.230 38.462 12.05 0.00 38.81 3.56
515 516 6.294473 CCACTTATCTTCATGGTAAGAGCAT 58.706 40.000 12.05 0.00 38.81 3.79
516 517 5.674525 CCACTTATCTTCATGGTAAGAGCA 58.325 41.667 12.05 0.00 38.81 4.26
517 518 4.513318 GCCACTTATCTTCATGGTAAGAGC 59.487 45.833 12.05 10.61 38.81 4.09
518 519 4.747108 CGCCACTTATCTTCATGGTAAGAG 59.253 45.833 12.05 6.74 38.81 2.85
519 520 4.404394 TCGCCACTTATCTTCATGGTAAGA 59.596 41.667 12.05 7.06 39.71 2.10
520 521 4.693283 TCGCCACTTATCTTCATGGTAAG 58.307 43.478 0.00 0.27 34.50 2.34
521 522 4.746535 TCGCCACTTATCTTCATGGTAA 57.253 40.909 0.00 0.00 34.50 2.85
522 523 4.746535 TTCGCCACTTATCTTCATGGTA 57.253 40.909 0.00 0.00 34.50 3.25
523 524 3.627395 TTCGCCACTTATCTTCATGGT 57.373 42.857 0.00 0.00 34.50 3.55
524 525 3.689161 TGTTTCGCCACTTATCTTCATGG 59.311 43.478 0.00 0.00 35.17 3.66
525 526 4.631377 TCTGTTTCGCCACTTATCTTCATG 59.369 41.667 0.00 0.00 0.00 3.07
526 527 4.832248 TCTGTTTCGCCACTTATCTTCAT 58.168 39.130 0.00 0.00 0.00 2.57
527 528 4.265904 TCTGTTTCGCCACTTATCTTCA 57.734 40.909 0.00 0.00 0.00 3.02
528 529 4.870426 TGATCTGTTTCGCCACTTATCTTC 59.130 41.667 0.00 0.00 0.00 2.87
529 530 4.832248 TGATCTGTTTCGCCACTTATCTT 58.168 39.130 0.00 0.00 0.00 2.40
530 531 4.471904 TGATCTGTTTCGCCACTTATCT 57.528 40.909 0.00 0.00 0.00 1.98
531 532 7.426929 AATATGATCTGTTTCGCCACTTATC 57.573 36.000 0.00 0.00 0.00 1.75
532 533 7.604164 CCTAATATGATCTGTTTCGCCACTTAT 59.396 37.037 0.00 0.00 0.00 1.73
533 534 6.929049 CCTAATATGATCTGTTTCGCCACTTA 59.071 38.462 0.00 0.00 0.00 2.24
534 535 5.760253 CCTAATATGATCTGTTTCGCCACTT 59.240 40.000 0.00 0.00 0.00 3.16
535 536 5.163301 ACCTAATATGATCTGTTTCGCCACT 60.163 40.000 0.00 0.00 0.00 4.00
536 537 5.057149 ACCTAATATGATCTGTTTCGCCAC 58.943 41.667 0.00 0.00 0.00 5.01
537 538 5.290493 ACCTAATATGATCTGTTTCGCCA 57.710 39.130 0.00 0.00 0.00 5.69
538 539 5.638234 GGTACCTAATATGATCTGTTTCGCC 59.362 44.000 4.06 0.00 0.00 5.54
539 540 6.220930 TGGTACCTAATATGATCTGTTTCGC 58.779 40.000 14.36 0.00 0.00 4.70
540 541 8.833231 AATGGTACCTAATATGATCTGTTTCG 57.167 34.615 14.36 0.00 0.00 3.46
542 543 8.850156 GCAAATGGTACCTAATATGATCTGTTT 58.150 33.333 14.36 0.00 0.00 2.83
543 544 8.220559 AGCAAATGGTACCTAATATGATCTGTT 58.779 33.333 14.36 0.00 0.00 3.16
544 545 7.749666 AGCAAATGGTACCTAATATGATCTGT 58.250 34.615 14.36 0.00 0.00 3.41
545 546 7.063898 CGAGCAAATGGTACCTAATATGATCTG 59.936 40.741 14.36 6.49 0.00 2.90
546 547 7.099764 CGAGCAAATGGTACCTAATATGATCT 58.900 38.462 14.36 0.00 0.00 2.75
547 548 6.313905 CCGAGCAAATGGTACCTAATATGATC 59.686 42.308 14.36 11.65 0.00 2.92
548 549 6.173339 CCGAGCAAATGGTACCTAATATGAT 58.827 40.000 14.36 3.93 0.00 2.45
549 550 5.512404 CCCGAGCAAATGGTACCTAATATGA 60.512 44.000 14.36 0.00 0.00 2.15
550 551 4.695455 CCCGAGCAAATGGTACCTAATATG 59.305 45.833 14.36 6.44 0.00 1.78
551 552 4.263331 CCCCGAGCAAATGGTACCTAATAT 60.263 45.833 14.36 0.00 0.00 1.28
552 553 3.071892 CCCCGAGCAAATGGTACCTAATA 59.928 47.826 14.36 0.00 0.00 0.98
553 554 2.158667 CCCCGAGCAAATGGTACCTAAT 60.159 50.000 14.36 0.00 0.00 1.73
554 555 1.210967 CCCCGAGCAAATGGTACCTAA 59.789 52.381 14.36 0.00 0.00 2.69
555 556 0.834612 CCCCGAGCAAATGGTACCTA 59.165 55.000 14.36 0.00 0.00 3.08
556 557 0.912487 TCCCCGAGCAAATGGTACCT 60.912 55.000 14.36 0.00 0.00 3.08
557 558 0.182775 ATCCCCGAGCAAATGGTACC 59.817 55.000 4.43 4.43 0.00 3.34
558 559 1.676006 CAATCCCCGAGCAAATGGTAC 59.324 52.381 0.00 0.00 0.00 3.34
559 560 1.283613 ACAATCCCCGAGCAAATGGTA 59.716 47.619 0.00 0.00 0.00 3.25
560 561 0.039618 ACAATCCCCGAGCAAATGGT 59.960 50.000 0.00 0.00 0.00 3.55
561 562 1.135024 CAACAATCCCCGAGCAAATGG 60.135 52.381 0.00 0.00 0.00 3.16
562 563 1.736696 GCAACAATCCCCGAGCAAATG 60.737 52.381 0.00 0.00 0.00 2.32
563 564 0.532115 GCAACAATCCCCGAGCAAAT 59.468 50.000 0.00 0.00 0.00 2.32
564 565 1.531739 GGCAACAATCCCCGAGCAAA 61.532 55.000 0.00 0.00 0.00 3.68
565 566 1.976474 GGCAACAATCCCCGAGCAA 60.976 57.895 0.00 0.00 0.00 3.91
566 567 2.361104 GGCAACAATCCCCGAGCA 60.361 61.111 0.00 0.00 0.00 4.26
567 568 2.044946 AGGCAACAATCCCCGAGC 60.045 61.111 0.00 0.00 41.41 5.03
568 569 0.322456 TTGAGGCAACAATCCCCGAG 60.322 55.000 0.00 0.00 41.41 4.63
569 570 0.111446 TTTGAGGCAACAATCCCCGA 59.889 50.000 0.00 0.00 41.41 5.14
570 571 1.185315 ATTTGAGGCAACAATCCCCG 58.815 50.000 0.00 0.00 41.41 5.73
571 572 2.302733 ACAATTTGAGGCAACAATCCCC 59.697 45.455 2.79 0.00 41.41 4.81
572 573 3.244181 ACACAATTTGAGGCAACAATCCC 60.244 43.478 2.79 0.00 41.41 3.85
573 574 3.989817 GACACAATTTGAGGCAACAATCC 59.010 43.478 2.79 0.00 41.41 3.01
574 575 4.619973 TGACACAATTTGAGGCAACAATC 58.380 39.130 2.79 0.00 41.41 2.67
575 576 4.669206 TGACACAATTTGAGGCAACAAT 57.331 36.364 2.79 0.00 41.41 2.71
576 577 4.341806 AGATGACACAATTTGAGGCAACAA 59.658 37.500 6.46 0.00 41.41 2.83
577 578 3.890756 AGATGACACAATTTGAGGCAACA 59.109 39.130 6.46 0.00 41.41 3.33
578 579 4.510038 AGATGACACAATTTGAGGCAAC 57.490 40.909 6.46 4.28 0.00 4.17
579 580 5.291178 CAAAGATGACACAATTTGAGGCAA 58.709 37.500 6.46 0.00 35.19 4.52
580 581 4.262121 CCAAAGATGACACAATTTGAGGCA 60.262 41.667 4.79 4.79 35.19 4.75
581 582 4.240096 CCAAAGATGACACAATTTGAGGC 58.760 43.478 2.79 0.00 35.19 4.70
582 583 5.458041 ACCAAAGATGACACAATTTGAGG 57.542 39.130 2.79 0.00 35.19 3.86
583 584 5.693104 CCAACCAAAGATGACACAATTTGAG 59.307 40.000 2.79 0.00 35.19 3.02
584 585 5.128499 ACCAACCAAAGATGACACAATTTGA 59.872 36.000 2.79 0.00 35.19 2.69
585 586 5.234757 CACCAACCAAAGATGACACAATTTG 59.765 40.000 0.00 0.00 33.45 2.32
586 587 5.104982 ACACCAACCAAAGATGACACAATTT 60.105 36.000 0.00 0.00 0.00 1.82
587 588 4.405358 ACACCAACCAAAGATGACACAATT 59.595 37.500 0.00 0.00 0.00 2.32
588 589 3.960102 ACACCAACCAAAGATGACACAAT 59.040 39.130 0.00 0.00 0.00 2.71
589 590 3.360867 ACACCAACCAAAGATGACACAA 58.639 40.909 0.00 0.00 0.00 3.33
590 591 3.011566 ACACCAACCAAAGATGACACA 57.988 42.857 0.00 0.00 0.00 3.72
591 592 4.385358 AAACACCAACCAAAGATGACAC 57.615 40.909 0.00 0.00 0.00 3.67
592 593 5.413309 AAAAACACCAACCAAAGATGACA 57.587 34.783 0.00 0.00 0.00 3.58
778 788 1.002502 TCGCTTCTCGGAGGACAGA 60.003 57.895 4.96 0.00 39.05 3.41
964 992 2.301738 GCCTAGGCAGGGACAGGTT 61.302 63.158 29.33 0.00 42.88 3.50
1258 1342 1.017177 GCGAAGTGGTGGCGATTACA 61.017 55.000 0.00 0.00 0.00 2.41
1260 1344 1.448893 GGCGAAGTGGTGGCGATTA 60.449 57.895 0.00 0.00 0.00 1.75
1813 1966 1.361632 GACCGTACGGCATAGGGAC 59.638 63.158 33.62 11.12 40.74 4.46
1848 2001 4.873129 CACCCCTGCGACGATCCG 62.873 72.222 0.00 0.00 0.00 4.18
2013 2194 0.983378 ATCCCAGCCACCCTGTACTC 60.983 60.000 0.00 0.00 40.06 2.59
2036 2217 1.176527 AAATGGTGTCGCAATCTGGG 58.823 50.000 0.00 0.00 0.00 4.45
2326 2547 3.960102 TGAAAATCAACCAAGCAGGAGTT 59.040 39.130 1.83 0.00 41.22 3.01
2356 2580 1.549037 GGGGTAACAACCAGGCATTGA 60.549 52.381 3.55 0.00 39.74 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.