Multiple sequence alignment - TraesCS5A01G533600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G533600 chr5A 100.000 7132 0 0 1 7132 690943542 690950673 0.000000e+00 13171
1 TraesCS5A01G533600 chr5A 88.430 121 10 4 4668 4785 635272836 635272717 7.460000e-30 143
2 TraesCS5A01G533600 chr4B 92.670 3588 166 48 1116 4667 653422692 653419166 0.000000e+00 5079
3 TraesCS5A01G533600 chr4B 84.743 1265 104 35 4780 5967 653419164 653417912 0.000000e+00 1184
4 TraesCS5A01G533600 chr4B 90.559 572 37 8 6538 7107 653417416 653416860 0.000000e+00 741
5 TraesCS5A01G533600 chr4B 85.977 706 69 17 5670 6354 653384584 653383888 0.000000e+00 728
6 TraesCS5A01G533600 chr4B 85.590 576 53 14 6558 7132 653383875 653383329 1.730000e-160 577
7 TraesCS5A01G533600 chr4B 90.576 382 24 7 5981 6354 653417787 653417410 4.970000e-136 496
8 TraesCS5A01G533600 chrUn 94.739 3060 120 17 1029 4063 126944909 126941866 0.000000e+00 4721
9 TraesCS5A01G533600 chrUn 86.854 1818 131 52 4631 6354 126941395 126939592 0.000000e+00 1934
10 TraesCS5A01G533600 chrUn 90.248 564 37 12 6585 7132 126939558 126938997 0.000000e+00 721
11 TraesCS5A01G533600 chrUn 91.581 487 22 8 4103 4585 126941869 126941398 0.000000e+00 654
12 TraesCS5A01G533600 chr5D 87.093 860 98 7 1 857 327211866 327212715 0.000000e+00 961
13 TraesCS5A01G533600 chr5D 86.562 826 101 9 1 825 381016345 381015529 0.000000e+00 902
14 TraesCS5A01G533600 chr5D 88.525 122 9 4 4668 4785 507564521 507564401 7.460000e-30 143
15 TraesCS5A01G533600 chr2B 86.009 872 92 19 1 860 620851200 620852053 0.000000e+00 907
16 TraesCS5A01G533600 chr2B 85.444 845 93 12 1 827 132999957 133000789 0.000000e+00 852
17 TraesCS5A01G533600 chr2B 94.828 174 9 0 6355 6528 57264591 57264764 9.120000e-69 272
18 TraesCS5A01G533600 chr2B 87.963 108 11 2 4679 4784 705871383 705871276 7.510000e-25 126
19 TraesCS5A01G533600 chr6B 85.855 813 84 13 1 794 601302671 601301871 0.000000e+00 835
20 TraesCS5A01G533600 chr6D 84.104 887 99 19 1 860 447400126 447399255 0.000000e+00 819
21 TraesCS5A01G533600 chr6D 84.935 843 88 17 1 819 446893486 446894313 0.000000e+00 817
22 TraesCS5A01G533600 chr6D 92.941 85 5 1 4686 4769 36072809 36072893 9.720000e-24 122
23 TraesCS5A01G533600 chr6D 86.916 107 13 1 4680 4785 8028243 8028349 1.260000e-22 119
24 TraesCS5A01G533600 chr4A 84.075 854 110 15 25 860 179071096 179070251 0.000000e+00 800
25 TraesCS5A01G533600 chr2A 82.854 869 130 12 1 860 638605392 638606250 0.000000e+00 761
26 TraesCS5A01G533600 chr2A 93.443 183 11 1 6347 6528 627410625 627410807 3.280000e-68 270
27 TraesCS5A01G533600 chr2A 94.253 174 10 0 6355 6528 249493232 249493059 4.240000e-67 267
28 TraesCS5A01G533600 chr7D 83.599 817 118 11 5 819 414429341 414430143 0.000000e+00 752
29 TraesCS5A01G533600 chr7B 78.992 476 74 12 1 458 198994395 198993928 1.160000e-77 302
30 TraesCS5A01G533600 chr7B 93.855 179 10 1 6355 6532 546526222 546526400 1.180000e-67 268
31 TraesCS5A01G533600 chr7B 93.855 179 10 1 6355 6532 546607078 546607256 1.180000e-67 268
32 TraesCS5A01G533600 chr7A 94.944 178 9 0 6351 6528 118103506 118103683 5.450000e-71 279
33 TraesCS5A01G533600 chr3A 94.857 175 9 0 6352 6526 566080388 566080214 2.530000e-69 274
34 TraesCS5A01G533600 chr3A 94.350 177 10 0 6352 6528 431171111 431171287 9.120000e-69 272
35 TraesCS5A01G533600 chr6A 93.370 181 11 1 6348 6528 135495686 135495865 4.240000e-67 267
36 TraesCS5A01G533600 chr4D 93.519 108 5 2 4679 4784 64546835 64546728 7.410000e-35 159
37 TraesCS5A01G533600 chr2D 92.157 102 7 1 4684 4784 392161770 392161669 7.460000e-30 143
38 TraesCS5A01G533600 chr1B 85.714 119 10 7 4671 4785 301273388 301273503 1.260000e-22 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G533600 chr5A 690943542 690950673 7131 False 13171.0 13171 100.0000 1 7132 1 chr5A.!!$F1 7131
1 TraesCS5A01G533600 chr4B 653416860 653422692 5832 True 1875.0 5079 89.6370 1116 7107 4 chr4B.!!$R2 5991
2 TraesCS5A01G533600 chr4B 653383329 653384584 1255 True 652.5 728 85.7835 5670 7132 2 chr4B.!!$R1 1462
3 TraesCS5A01G533600 chrUn 126938997 126944909 5912 True 2007.5 4721 90.8555 1029 7132 4 chrUn.!!$R1 6103
4 TraesCS5A01G533600 chr5D 327211866 327212715 849 False 961.0 961 87.0930 1 857 1 chr5D.!!$F1 856
5 TraesCS5A01G533600 chr5D 381015529 381016345 816 True 902.0 902 86.5620 1 825 1 chr5D.!!$R1 824
6 TraesCS5A01G533600 chr2B 620851200 620852053 853 False 907.0 907 86.0090 1 860 1 chr2B.!!$F3 859
7 TraesCS5A01G533600 chr2B 132999957 133000789 832 False 852.0 852 85.4440 1 827 1 chr2B.!!$F2 826
8 TraesCS5A01G533600 chr6B 601301871 601302671 800 True 835.0 835 85.8550 1 794 1 chr6B.!!$R1 793
9 TraesCS5A01G533600 chr6D 447399255 447400126 871 True 819.0 819 84.1040 1 860 1 chr6D.!!$R1 859
10 TraesCS5A01G533600 chr6D 446893486 446894313 827 False 817.0 817 84.9350 1 819 1 chr6D.!!$F3 818
11 TraesCS5A01G533600 chr4A 179070251 179071096 845 True 800.0 800 84.0750 25 860 1 chr4A.!!$R1 835
12 TraesCS5A01G533600 chr2A 638605392 638606250 858 False 761.0 761 82.8540 1 860 1 chr2A.!!$F2 859
13 TraesCS5A01G533600 chr7D 414429341 414430143 802 False 752.0 752 83.5990 5 819 1 chr7D.!!$F1 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
888 955 0.031010 GCTCTTAGGGGAAGGGAGGA 60.031 60.0 0.00 0.0 37.95 3.71 F
1610 1722 0.026285 CGAACCGGAAATCGCATGTC 59.974 55.0 9.46 0.0 37.59 3.06 F
2135 2250 0.034896 GGAAGAAGAGCAACCGTCCA 59.965 55.0 0.00 0.0 0.00 4.02 F
2136 2251 1.149148 GAAGAAGAGCAACCGTCCAC 58.851 55.0 0.00 0.0 0.00 4.02 F
2561 2676 1.389555 CTTATGAGAAAACGGGCCCC 58.610 55.0 18.66 0.3 0.00 5.80 F
3788 3903 1.497991 GAAGCAGTGAAGCACGTGTA 58.502 50.0 18.38 0.0 39.64 2.90 F
5372 5565 0.107268 TCATCATCCATCACGGCCAG 59.893 55.0 2.24 0.0 33.14 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2054 2169 0.323302 TTACCATGTCGGCAGCAAGA 59.677 50.000 0.00 0.0 39.03 3.02 R
2847 2962 1.427435 GAGCTCTCAACAGACACAGC 58.573 55.000 6.43 0.0 0.00 4.40 R
3974 4089 0.182061 GGAGGAAGCATGATCTGGCA 59.818 55.000 10.96 0.0 0.00 4.92 R
3991 4106 0.546747 ACCGGGGTTTCTGATCTGGA 60.547 55.000 6.32 0.0 0.00 3.86 R
4131 4248 1.537202 ACAGATTTTCCGCTGCTGTTC 59.463 47.619 0.00 0.0 36.49 3.18 R
5405 5598 0.179119 GCATTGGCTCTGATGCAACC 60.179 55.000 0.00 0.0 46.03 3.77 R
6473 6832 0.040058 TAGGGTCACCGAGTAGGCAA 59.960 55.000 0.00 0.0 46.52 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.065199 TCCACTTCCATCCACATCTGC 60.065 52.381 0.00 0.00 0.00 4.26
121 125 2.039462 GGGAAGGGCAAGGGCAAT 59.961 61.111 0.00 0.00 43.71 3.56
155 159 1.306141 TCATCCTCCCGTGCTCCTT 60.306 57.895 0.00 0.00 0.00 3.36
157 161 2.427245 ATCCTCCCGTGCTCCTTCG 61.427 63.158 0.00 0.00 0.00 3.79
239 268 1.358103 AGTAGCACTGGGAGTACAGGA 59.642 52.381 0.00 0.00 42.75 3.86
242 271 0.977395 GCACTGGGAGTACAGGAAGT 59.023 55.000 0.00 0.00 42.75 3.01
293 323 4.101448 GCTGGCACCTGGATCCGT 62.101 66.667 7.39 0.00 0.00 4.69
459 489 0.732880 CGAACACGAGGAGCAACGAT 60.733 55.000 0.00 0.00 0.00 3.73
493 523 1.375396 CCATCTCGCCACCGTTTCA 60.375 57.895 0.00 0.00 35.54 2.69
612 650 2.758327 AGGACGCGCACTGGGATA 60.758 61.111 5.73 0.00 0.00 2.59
614 652 2.494918 GACGCGCACTGGGATAGT 59.505 61.111 5.73 0.00 41.36 2.12
621 659 1.490574 GCACTGGGATAGTCTGGAGT 58.509 55.000 0.00 0.00 37.60 3.85
748 807 2.720134 GGAAGCGCTCTCTGCCTCT 61.720 63.158 12.06 0.00 38.78 3.69
754 813 1.112315 CGCTCTCTGCCTCTACCCAT 61.112 60.000 0.00 0.00 38.78 4.00
819 878 2.601666 TGAGCGTGCCTCCTGTCT 60.602 61.111 0.00 0.00 39.98 3.41
838 905 3.132646 GTCTACGACACTAGAGGAGGAGA 59.867 52.174 0.00 0.00 32.09 3.71
840 907 1.629353 ACGACACTAGAGGAGGAGACA 59.371 52.381 0.00 0.00 0.00 3.41
846 913 0.937441 TAGAGGAGGAGACAGCCCAT 59.063 55.000 0.00 0.00 0.00 4.00
860 927 1.523258 CCCATCTTGAGCGCTGGAG 60.523 63.158 18.48 12.93 0.00 3.86
861 928 1.220206 CCATCTTGAGCGCTGGAGT 59.780 57.895 18.48 0.29 0.00 3.85
862 929 0.392193 CCATCTTGAGCGCTGGAGTT 60.392 55.000 18.48 4.37 0.00 3.01
863 930 0.725686 CATCTTGAGCGCTGGAGTTG 59.274 55.000 18.48 13.53 0.00 3.16
864 931 0.392193 ATCTTGAGCGCTGGAGTTGG 60.392 55.000 18.48 0.00 0.00 3.77
865 932 1.004560 CTTGAGCGCTGGAGTTGGA 60.005 57.895 18.48 0.00 0.00 3.53
866 933 1.004560 TTGAGCGCTGGAGTTGGAG 60.005 57.895 18.48 0.00 0.00 3.86
867 934 1.758440 TTGAGCGCTGGAGTTGGAGT 61.758 55.000 18.48 0.00 0.00 3.85
868 935 1.004440 GAGCGCTGGAGTTGGAGTT 60.004 57.895 18.48 0.00 0.00 3.01
869 936 1.294659 GAGCGCTGGAGTTGGAGTTG 61.295 60.000 18.48 0.00 0.00 3.16
870 937 2.970974 GCGCTGGAGTTGGAGTTGC 61.971 63.158 0.00 0.00 0.00 4.17
871 938 1.302033 CGCTGGAGTTGGAGTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
872 939 1.294659 CGCTGGAGTTGGAGTTGCTC 61.295 60.000 0.00 0.00 0.00 4.26
873 940 0.036022 GCTGGAGTTGGAGTTGCTCT 59.964 55.000 0.00 0.00 0.00 4.09
874 941 1.544314 GCTGGAGTTGGAGTTGCTCTT 60.544 52.381 0.00 0.00 0.00 2.85
875 942 2.289694 GCTGGAGTTGGAGTTGCTCTTA 60.290 50.000 0.00 0.00 0.00 2.10
876 943 3.594134 CTGGAGTTGGAGTTGCTCTTAG 58.406 50.000 0.00 0.00 0.00 2.18
877 944 2.303022 TGGAGTTGGAGTTGCTCTTAGG 59.697 50.000 0.00 0.00 0.00 2.69
878 945 2.355209 GGAGTTGGAGTTGCTCTTAGGG 60.355 54.545 0.00 0.00 0.00 3.53
879 946 1.630878 AGTTGGAGTTGCTCTTAGGGG 59.369 52.381 0.00 0.00 0.00 4.79
880 947 1.628846 GTTGGAGTTGCTCTTAGGGGA 59.371 52.381 0.00 0.00 0.00 4.81
881 948 2.038863 TGGAGTTGCTCTTAGGGGAA 57.961 50.000 0.00 0.00 0.00 3.97
882 949 1.909302 TGGAGTTGCTCTTAGGGGAAG 59.091 52.381 0.00 0.00 36.38 3.46
883 950 1.210722 GGAGTTGCTCTTAGGGGAAGG 59.789 57.143 0.00 0.00 35.67 3.46
884 951 1.210722 GAGTTGCTCTTAGGGGAAGGG 59.789 57.143 0.00 0.00 38.86 3.95
885 952 1.203440 AGTTGCTCTTAGGGGAAGGGA 60.203 52.381 0.00 0.00 37.95 4.20
886 953 1.210722 GTTGCTCTTAGGGGAAGGGAG 59.789 57.143 0.00 0.00 37.95 4.30
887 954 0.326618 TGCTCTTAGGGGAAGGGAGG 60.327 60.000 0.00 0.00 37.95 4.30
888 955 0.031010 GCTCTTAGGGGAAGGGAGGA 60.031 60.000 0.00 0.00 37.95 3.71
889 956 1.625508 GCTCTTAGGGGAAGGGAGGAA 60.626 57.143 0.00 0.00 37.95 3.36
890 957 2.966698 GCTCTTAGGGGAAGGGAGGAAT 60.967 54.545 0.00 0.00 37.95 3.01
891 958 3.398490 CTCTTAGGGGAAGGGAGGAATT 58.602 50.000 0.00 0.00 37.95 2.17
892 959 3.123273 TCTTAGGGGAAGGGAGGAATTG 58.877 50.000 0.00 0.00 35.67 2.32
893 960 1.907240 TAGGGGAAGGGAGGAATTGG 58.093 55.000 0.00 0.00 0.00 3.16
894 961 0.926220 AGGGGAAGGGAGGAATTGGG 60.926 60.000 0.00 0.00 0.00 4.12
895 962 1.075970 GGGAAGGGAGGAATTGGGC 60.076 63.158 0.00 0.00 0.00 5.36
896 963 1.453928 GGAAGGGAGGAATTGGGCG 60.454 63.158 0.00 0.00 0.00 6.13
897 964 1.453928 GAAGGGAGGAATTGGGCGG 60.454 63.158 0.00 0.00 0.00 6.13
898 965 1.921869 GAAGGGAGGAATTGGGCGGA 61.922 60.000 0.00 0.00 0.00 5.54
899 966 2.124278 GGGAGGAATTGGGCGGAC 60.124 66.667 0.00 0.00 0.00 4.79
900 967 2.513897 GGAGGAATTGGGCGGACG 60.514 66.667 0.00 0.00 0.00 4.79
901 968 2.267961 GAGGAATTGGGCGGACGT 59.732 61.111 0.00 0.00 0.00 4.34
902 969 2.046314 AGGAATTGGGCGGACGTG 60.046 61.111 0.00 0.00 0.00 4.49
903 970 3.131478 GGAATTGGGCGGACGTGG 61.131 66.667 0.00 0.00 0.00 4.94
904 971 2.359478 GAATTGGGCGGACGTGGT 60.359 61.111 0.00 0.00 0.00 4.16
905 972 1.078988 GAATTGGGCGGACGTGGTA 60.079 57.895 0.00 0.00 0.00 3.25
906 973 1.363885 GAATTGGGCGGACGTGGTAC 61.364 60.000 0.00 0.00 0.00 3.34
907 974 1.833787 AATTGGGCGGACGTGGTACT 61.834 55.000 0.00 0.00 0.00 2.73
908 975 2.515996 ATTGGGCGGACGTGGTACTG 62.516 60.000 0.00 0.00 0.00 2.74
909 976 3.688159 GGGCGGACGTGGTACTGT 61.688 66.667 0.00 0.00 0.00 3.55
910 977 2.126189 GGCGGACGTGGTACTGTC 60.126 66.667 0.00 0.00 0.00 3.51
911 978 2.646719 GCGGACGTGGTACTGTCA 59.353 61.111 0.00 0.00 36.83 3.58
912 979 1.007038 GCGGACGTGGTACTGTCAA 60.007 57.895 0.00 0.00 36.83 3.18
913 980 1.280206 GCGGACGTGGTACTGTCAAC 61.280 60.000 0.00 3.76 36.83 3.18
914 981 0.665369 CGGACGTGGTACTGTCAACC 60.665 60.000 0.00 0.00 36.83 3.77
915 982 0.665369 GGACGTGGTACTGTCAACCG 60.665 60.000 0.00 0.00 40.08 4.44
916 983 0.031178 GACGTGGTACTGTCAACCGT 59.969 55.000 0.00 0.00 40.08 4.83
917 984 0.249155 ACGTGGTACTGTCAACCGTG 60.249 55.000 0.00 0.00 40.08 4.94
918 985 1.554042 CGTGGTACTGTCAACCGTGC 61.554 60.000 0.00 0.00 40.08 5.34
919 986 1.070105 TGGTACTGTCAACCGTGCC 59.930 57.895 5.16 5.16 40.08 5.01
920 987 1.070105 GGTACTGTCAACCGTGCCA 59.930 57.895 6.89 0.00 36.15 4.92
921 988 0.949105 GGTACTGTCAACCGTGCCAG 60.949 60.000 6.89 0.00 36.15 4.85
922 989 0.949105 GTACTGTCAACCGTGCCAGG 60.949 60.000 0.00 0.00 37.30 4.45
924 991 1.961277 CTGTCAACCGTGCCAGGTC 60.961 63.158 0.40 0.00 45.21 3.85
925 992 2.110213 GTCAACCGTGCCAGGTCA 59.890 61.111 0.40 0.00 45.21 4.02
926 993 1.525077 GTCAACCGTGCCAGGTCAA 60.525 57.895 0.40 0.00 45.21 3.18
927 994 1.525077 TCAACCGTGCCAGGTCAAC 60.525 57.895 0.40 0.00 45.21 3.18
928 995 2.590575 AACCGTGCCAGGTCAACG 60.591 61.111 0.40 4.89 45.21 4.10
929 996 3.394635 AACCGTGCCAGGTCAACGT 62.395 57.895 9.66 0.00 45.21 3.99
930 997 2.030490 AACCGTGCCAGGTCAACGTA 62.030 55.000 9.66 0.00 45.21 3.57
931 998 2.025418 CCGTGCCAGGTCAACGTAC 61.025 63.158 9.66 0.00 0.00 3.67
932 999 1.300311 CGTGCCAGGTCAACGTACA 60.300 57.895 0.00 0.00 0.00 2.90
933 1000 1.282248 CGTGCCAGGTCAACGTACAG 61.282 60.000 0.00 0.00 0.00 2.74
934 1001 0.032952 GTGCCAGGTCAACGTACAGA 59.967 55.000 0.00 0.00 0.00 3.41
935 1002 0.753867 TGCCAGGTCAACGTACAGAA 59.246 50.000 0.00 0.00 0.00 3.02
936 1003 1.145803 GCCAGGTCAACGTACAGAAC 58.854 55.000 0.00 0.00 0.00 3.01
937 1004 1.792006 CCAGGTCAACGTACAGAACC 58.208 55.000 0.00 0.00 0.00 3.62
938 1005 1.343465 CCAGGTCAACGTACAGAACCT 59.657 52.381 0.00 0.00 0.00 3.50
939 1006 2.404215 CAGGTCAACGTACAGAACCTG 58.596 52.381 15.28 15.28 37.52 4.00
940 1007 1.343465 AGGTCAACGTACAGAACCTGG 59.657 52.381 5.65 0.00 35.51 4.45
941 1008 1.607251 GGTCAACGTACAGAACCTGGG 60.607 57.143 0.00 0.00 35.51 4.45
942 1009 0.034337 TCAACGTACAGAACCTGGGC 59.966 55.000 0.00 0.00 35.51 5.36
943 1010 0.250124 CAACGTACAGAACCTGGGCA 60.250 55.000 0.00 0.00 35.51 5.36
944 1011 0.690762 AACGTACAGAACCTGGGCAT 59.309 50.000 0.00 0.00 35.51 4.40
945 1012 0.690762 ACGTACAGAACCTGGGCATT 59.309 50.000 0.00 0.00 35.51 3.56
946 1013 1.073284 ACGTACAGAACCTGGGCATTT 59.927 47.619 0.00 0.00 35.51 2.32
947 1014 2.159382 CGTACAGAACCTGGGCATTTT 58.841 47.619 0.00 0.00 35.51 1.82
948 1015 2.556622 CGTACAGAACCTGGGCATTTTT 59.443 45.455 0.00 0.00 35.51 1.94
965 1032 3.332706 TTTTTACGACCTGGGCTGG 57.667 52.632 0.00 0.00 0.00 4.85
966 1033 0.475044 TTTTTACGACCTGGGCTGGT 59.525 50.000 0.00 2.60 44.10 4.00
967 1034 0.475044 TTTTACGACCTGGGCTGGTT 59.525 50.000 0.00 0.00 41.00 3.67
968 1035 1.350071 TTTACGACCTGGGCTGGTTA 58.650 50.000 0.00 0.00 41.00 2.85
969 1036 0.609662 TTACGACCTGGGCTGGTTAC 59.390 55.000 0.00 0.00 41.00 2.50
970 1037 1.597797 TACGACCTGGGCTGGTTACG 61.598 60.000 0.00 6.89 41.00 3.18
971 1038 2.939261 CGACCTGGGCTGGTTACGT 61.939 63.158 0.00 0.00 41.00 3.57
972 1039 1.375523 GACCTGGGCTGGTTACGTG 60.376 63.158 0.00 0.00 41.00 4.49
973 1040 2.046314 CCTGGGCTGGTTACGTGG 60.046 66.667 0.00 0.00 0.00 4.94
974 1041 2.589157 CCTGGGCTGGTTACGTGGA 61.589 63.158 0.00 0.00 0.00 4.02
975 1042 1.375523 CTGGGCTGGTTACGTGGAC 60.376 63.158 0.00 0.00 0.00 4.02
976 1043 1.827399 CTGGGCTGGTTACGTGGACT 61.827 60.000 0.00 0.00 0.00 3.85
977 1044 1.373812 GGGCTGGTTACGTGGACTT 59.626 57.895 0.00 0.00 0.00 3.01
978 1045 0.953960 GGGCTGGTTACGTGGACTTG 60.954 60.000 0.00 0.00 0.00 3.16
979 1046 0.250166 GGCTGGTTACGTGGACTTGT 60.250 55.000 0.00 0.00 0.00 3.16
980 1047 1.589803 GCTGGTTACGTGGACTTGTT 58.410 50.000 0.00 0.00 0.00 2.83
981 1048 1.944709 GCTGGTTACGTGGACTTGTTT 59.055 47.619 0.00 0.00 0.00 2.83
982 1049 2.032290 GCTGGTTACGTGGACTTGTTTC 60.032 50.000 0.00 0.00 0.00 2.78
983 1050 2.203401 TGGTTACGTGGACTTGTTTCG 58.797 47.619 0.00 0.00 0.00 3.46
984 1051 1.070376 GGTTACGTGGACTTGTTTCGC 60.070 52.381 0.00 0.00 0.00 4.70
985 1052 1.070376 GTTACGTGGACTTGTTTCGCC 60.070 52.381 0.00 0.00 0.00 5.54
986 1053 0.600782 TACGTGGACTTGTTTCGCCC 60.601 55.000 0.00 0.00 0.00 6.13
987 1054 2.613506 CGTGGACTTGTTTCGCCCC 61.614 63.158 0.00 0.00 0.00 5.80
988 1055 1.527380 GTGGACTTGTTTCGCCCCA 60.527 57.895 0.00 0.00 0.00 4.96
989 1056 1.104577 GTGGACTTGTTTCGCCCCAA 61.105 55.000 0.00 0.00 0.00 4.12
990 1057 0.821711 TGGACTTGTTTCGCCCCAAG 60.822 55.000 0.00 0.00 42.91 3.61
991 1058 1.524008 GGACTTGTTTCGCCCCAAGG 61.524 60.000 10.93 0.00 41.84 3.61
1001 1068 4.231140 CCCCAAGGCCCAACAAAT 57.769 55.556 0.00 0.00 0.00 2.32
1002 1069 1.982430 CCCCAAGGCCCAACAAATC 59.018 57.895 0.00 0.00 0.00 2.17
1003 1070 1.552799 CCCCAAGGCCCAACAAATCC 61.553 60.000 0.00 0.00 0.00 3.01
1004 1071 0.835543 CCCAAGGCCCAACAAATCCA 60.836 55.000 0.00 0.00 0.00 3.41
1005 1072 1.055040 CCAAGGCCCAACAAATCCAA 58.945 50.000 0.00 0.00 0.00 3.53
1006 1073 1.270785 CCAAGGCCCAACAAATCCAAC 60.271 52.381 0.00 0.00 0.00 3.77
1007 1074 1.415659 CAAGGCCCAACAAATCCAACA 59.584 47.619 0.00 0.00 0.00 3.33
1008 1075 1.799933 AGGCCCAACAAATCCAACAA 58.200 45.000 0.00 0.00 0.00 2.83
1009 1076 1.693606 AGGCCCAACAAATCCAACAAG 59.306 47.619 0.00 0.00 0.00 3.16
1010 1077 1.270785 GGCCCAACAAATCCAACAAGG 60.271 52.381 0.00 0.00 39.47 3.61
1011 1078 1.877680 GCCCAACAAATCCAACAAGGC 60.878 52.381 0.00 0.00 37.29 4.35
1012 1079 1.270785 CCCAACAAATCCAACAAGGCC 60.271 52.381 0.00 0.00 37.29 5.19
1013 1080 1.693606 CCAACAAATCCAACAAGGCCT 59.306 47.619 0.00 0.00 37.29 5.19
1014 1081 2.548493 CCAACAAATCCAACAAGGCCTG 60.548 50.000 5.69 2.82 37.29 4.85
1015 1082 0.681175 ACAAATCCAACAAGGCCTGC 59.319 50.000 5.69 0.00 37.29 4.85
1016 1083 0.037046 CAAATCCAACAAGGCCTGCC 60.037 55.000 5.69 0.00 37.29 4.85
1017 1084 1.535204 AAATCCAACAAGGCCTGCCG 61.535 55.000 5.69 0.00 41.95 5.69
1020 1087 2.359850 CAACAAGGCCTGCCGCTA 60.360 61.111 5.69 0.00 41.95 4.26
1021 1088 2.359975 AACAAGGCCTGCCGCTAC 60.360 61.111 5.69 0.00 41.95 3.58
1022 1089 3.920093 AACAAGGCCTGCCGCTACC 62.920 63.158 5.69 0.00 41.95 3.18
1167 1272 4.899239 GCCCCCATCTCTGTCGCG 62.899 72.222 0.00 0.00 0.00 5.87
1168 1273 3.147595 CCCCCATCTCTGTCGCGA 61.148 66.667 3.71 3.71 0.00 5.87
1169 1274 2.105128 CCCCATCTCTGTCGCGAC 59.895 66.667 31.66 31.66 0.00 5.19
1170 1275 2.418910 CCCCATCTCTGTCGCGACT 61.419 63.158 36.27 16.27 0.00 4.18
1171 1276 1.226802 CCCATCTCTGTCGCGACTG 60.227 63.158 36.27 34.37 0.00 3.51
1172 1277 1.875813 CCATCTCTGTCGCGACTGC 60.876 63.158 36.27 14.47 37.91 4.40
1173 1278 1.138459 CATCTCTGTCGCGACTGCT 59.862 57.895 36.27 21.21 39.65 4.24
1174 1279 0.865218 CATCTCTGTCGCGACTGCTC 60.865 60.000 36.27 13.69 39.65 4.26
1175 1280 1.029408 ATCTCTGTCGCGACTGCTCT 61.029 55.000 36.27 20.59 39.65 4.09
1176 1281 1.226267 CTCTGTCGCGACTGCTCTC 60.226 63.158 36.27 12.16 39.65 3.20
1177 1282 1.643868 CTCTGTCGCGACTGCTCTCT 61.644 60.000 36.27 0.00 39.65 3.10
1178 1283 1.226267 CTGTCGCGACTGCTCTCTC 60.226 63.158 36.27 10.63 39.65 3.20
1179 1284 2.276994 GTCGCGACTGCTCTCTCG 60.277 66.667 31.12 0.00 39.65 4.04
1184 1289 2.407210 GACTGCTCTCTCGGCTCG 59.593 66.667 0.00 0.00 0.00 5.03
1206 1311 4.959596 GCGCCGAGGATGGAGAGC 62.960 72.222 0.00 0.00 0.00 4.09
1216 1321 1.680522 GATGGAGAGCGGAGGAAGCA 61.681 60.000 0.00 0.00 37.01 3.91
1261 1369 0.320421 GGATTATTAGGCGGCGCTCA 60.320 55.000 32.30 16.86 0.00 4.26
1314 1426 0.252197 AGCCAAACCGAGGTACATCC 59.748 55.000 1.23 0.00 0.00 3.51
1319 1431 1.591768 AACCGAGGTACATCCCCAAT 58.408 50.000 1.23 0.00 36.75 3.16
1395 1507 2.846039 ATCTGTAGTACAAGACCGCG 57.154 50.000 4.21 0.00 0.00 6.46
1429 1541 1.514087 CATCCATGGCAGGCAACAC 59.486 57.895 6.96 0.00 41.41 3.32
1497 1609 2.021380 GTGCCGTATTTGCGCTCG 59.979 61.111 9.73 5.78 36.34 5.03
1558 1670 5.072193 TGGACCACAAGTATCATGATGCTAT 59.928 40.000 24.27 14.14 33.35 2.97
1597 1709 1.607628 AGATACCGGATTCTCGAACCG 59.392 52.381 9.46 11.30 45.24 4.44
1610 1722 0.026285 CGAACCGGAAATCGCATGTC 59.974 55.000 9.46 0.00 37.59 3.06
1618 1730 2.927477 GGAAATCGCATGTCGTTACTCA 59.073 45.455 8.91 0.00 39.67 3.41
1697 1812 3.755905 CTCTGCTAGCATCGGAGATAGAA 59.244 47.826 21.93 0.00 45.12 2.10
1702 1817 3.742433 AGCATCGGAGATAGAAACTGG 57.258 47.619 0.00 0.00 45.12 4.00
1705 1820 3.800604 GCATCGGAGATAGAAACTGGGAC 60.801 52.174 0.00 0.00 45.12 4.46
1826 1941 4.664677 GCGGCGACCTGTGACACT 62.665 66.667 12.98 0.00 0.00 3.55
1844 1959 2.047061 ACTCACAGGCTTAACCAGTCA 58.953 47.619 0.00 0.00 43.14 3.41
1865 1980 1.233950 ACAATGTGGTTGATCGCGCA 61.234 50.000 8.75 0.00 40.37 6.09
1920 2035 2.508300 GCCCTGATTTACCTGTCCCTTA 59.492 50.000 0.00 0.00 0.00 2.69
1944 2059 4.379243 CACGGTGCGCTCCTCCTT 62.379 66.667 24.75 5.10 0.00 3.36
2000 2115 0.402504 TTGAAGCATACCCACCCGTT 59.597 50.000 0.00 0.00 0.00 4.44
2042 2157 1.585297 CACACATGTGTCAGACTGCA 58.415 50.000 28.38 1.58 42.83 4.41
2048 2163 2.280797 TGTCAGACTGCAACCGGC 60.281 61.111 0.00 0.00 45.13 6.13
2051 2166 2.031012 CAGACTGCAACCGGCTCA 59.969 61.111 0.00 0.00 45.15 4.26
2054 2169 0.250901 AGACTGCAACCGGCTCATTT 60.251 50.000 0.00 0.00 45.15 2.32
2135 2250 0.034896 GGAAGAAGAGCAACCGTCCA 59.965 55.000 0.00 0.00 0.00 4.02
2136 2251 1.149148 GAAGAAGAGCAACCGTCCAC 58.851 55.000 0.00 0.00 0.00 4.02
2169 2284 4.466015 TGAAGCCCAATTCATTTACCTTCC 59.534 41.667 0.00 0.00 34.31 3.46
2561 2676 1.389555 CTTATGAGAAAACGGGCCCC 58.610 55.000 18.66 0.30 0.00 5.80
2847 2962 2.444421 AGGCAAGCAAAGAGGATTCAG 58.556 47.619 0.00 0.00 0.00 3.02
2849 2964 1.817447 GCAAGCAAAGAGGATTCAGCT 59.183 47.619 0.00 0.00 32.11 4.24
3201 3316 4.072131 TGTTAACAGGGAGTTTGAGATGC 58.928 43.478 3.59 0.00 41.64 3.91
3317 3432 9.859427 CATGACTGGAACAATGTTATACATTTT 57.141 29.630 0.00 2.23 45.80 1.82
3409 3524 4.555116 GCCAAATGCACAAACTTTCCATTG 60.555 41.667 0.00 0.00 40.77 2.82
3581 3696 2.859165 TCCTTCGAGCAATGGAAGTT 57.141 45.000 0.77 0.00 38.34 2.66
3759 3874 3.843422 TGGATTGGGTTGACATGAAAGT 58.157 40.909 0.00 0.00 0.00 2.66
3769 3884 5.922544 GGTTGACATGAAAGTGAGATTTTGG 59.077 40.000 0.00 0.00 0.00 3.28
3788 3903 1.497991 GAAGCAGTGAAGCACGTGTA 58.502 50.000 18.38 0.00 39.64 2.90
3857 3972 3.244735 GCCTCTATCTTTGATCCTTCCCC 60.245 52.174 0.00 0.00 0.00 4.81
3928 4043 3.071312 ACCTGCTCTGAGGATGATGATTC 59.929 47.826 8.34 0.00 36.51 2.52
3974 4089 3.555956 CGTGCTACAGGAATAAATCGCTT 59.444 43.478 0.00 0.00 0.00 4.68
3991 4106 2.022754 GCTTGCCAGATCATGCTTCCT 61.023 52.381 7.82 0.00 35.17 3.36
4019 4134 3.460478 AAACCCCGGTGGCCAATGT 62.460 57.895 7.24 0.00 37.83 2.71
4044 4159 5.808030 CGTCCAGTTTTGGTATGTTGTTTTT 59.192 36.000 0.00 0.00 45.26 1.94
4085 4200 3.844211 AGCCATTTGTTCTAGTGGACCTA 59.156 43.478 0.00 0.00 33.53 3.08
4086 4201 4.080863 AGCCATTTGTTCTAGTGGACCTAG 60.081 45.833 0.00 0.00 43.97 3.02
4087 4202 4.192317 CCATTTGTTCTAGTGGACCTAGC 58.808 47.826 0.00 0.00 42.57 3.42
4089 4204 2.615986 TGTTCTAGTGGACCTAGCCA 57.384 50.000 0.00 0.00 42.57 4.75
4090 4205 3.116096 TGTTCTAGTGGACCTAGCCAT 57.884 47.619 0.00 0.00 42.57 4.40
4091 4206 4.259933 TGTTCTAGTGGACCTAGCCATA 57.740 45.455 0.00 0.00 42.57 2.74
4092 4207 3.958798 TGTTCTAGTGGACCTAGCCATAC 59.041 47.826 0.00 0.00 42.57 2.39
4131 4248 8.193438 TCTGAGACAAGATGTACATGAACATAG 58.807 37.037 14.43 2.62 40.17 2.23
4187 4305 4.438744 CCAGTGTTCAAGTTGAAACAGGTC 60.439 45.833 19.63 7.22 38.22 3.85
4365 4483 7.633193 TGTTTTGTAAGTTAACATGGTCTGT 57.367 32.000 8.61 0.00 40.84 3.41
4377 4495 3.323691 ACATGGTCTGTGCACTAGTGTTA 59.676 43.478 23.44 10.89 36.48 2.41
4433 4553 7.039363 TGGGAAAAGGATATTTTGTTACCAGTG 60.039 37.037 0.00 0.00 0.00 3.66
4449 4570 8.247562 TGTTACCAGTGATATAACCAAATTTGC 58.752 33.333 12.92 0.00 0.00 3.68
4500 4621 9.688592 CAAATTTATCTTTTCTGGCTATGGATC 57.311 33.333 0.00 0.00 0.00 3.36
4501 4622 9.652114 AAATTTATCTTTTCTGGCTATGGATCT 57.348 29.630 0.00 0.00 0.00 2.75
4503 4624 9.956640 ATTTATCTTTTCTGGCTATGGATCTAG 57.043 33.333 0.00 0.00 0.00 2.43
4505 4626 7.811482 ATCTTTTCTGGCTATGGATCTAGAT 57.189 36.000 4.47 4.47 0.00 1.98
4506 4627 8.907829 ATCTTTTCTGGCTATGGATCTAGATA 57.092 34.615 4.89 0.00 0.00 1.98
4507 4628 8.727100 TCTTTTCTGGCTATGGATCTAGATAA 57.273 34.615 4.89 0.00 0.00 1.75
4508 4629 9.331466 TCTTTTCTGGCTATGGATCTAGATAAT 57.669 33.333 4.89 5.48 0.00 1.28
4511 4632 9.775539 TTTCTGGCTATGGATCTAGATAATACT 57.224 33.333 4.89 0.00 0.00 2.12
4513 4634 9.854668 TCTGGCTATGGATCTAGATAATACTAC 57.145 37.037 4.89 0.00 0.00 2.73
4514 4635 9.860650 CTGGCTATGGATCTAGATAATACTACT 57.139 37.037 4.89 0.00 0.00 2.57
4645 4803 5.602458 AATAGTGCTGTTCATATGATGCG 57.398 39.130 6.17 0.00 0.00 4.73
4684 4842 9.908747 ATCTCAGACTGTATATGTAGGTATACC 57.091 37.037 14.54 14.54 36.94 2.73
4702 4860 3.611766 ACCTCCGTCCAGAAATAACTG 57.388 47.619 0.00 0.00 37.61 3.16
4708 4866 2.993899 CGTCCAGAAATAACTGTCGCTT 59.006 45.455 0.00 0.00 36.30 4.68
4726 4884 5.624491 GTCGCTTAAACGGATGTATCTAGAC 59.376 44.000 0.00 0.00 0.00 2.59
4772 4931 2.972625 TGAGCGACAGTTATTTCTGGG 58.027 47.619 0.00 0.00 39.48 4.45
4773 4932 1.666189 GAGCGACAGTTATTTCTGGGC 59.334 52.381 0.00 0.00 39.48 5.36
4790 4949 2.105821 TGGGCGGAGGGAGTATAATTTG 59.894 50.000 0.00 0.00 0.00 2.32
4795 4954 4.036380 GCGGAGGGAGTATAATTTGGTTTG 59.964 45.833 0.00 0.00 0.00 2.93
4830 4989 7.312154 GTGTTTTGAACCATGCATTGTATCTA 58.688 34.615 3.50 0.00 0.00 1.98
4835 4994 8.523915 TTGAACCATGCATTGTATCTAAGAAT 57.476 30.769 3.50 0.00 0.00 2.40
4892 5051 4.456911 ACTTGTTTGCGTCTCATTGATGAT 59.543 37.500 0.00 0.00 36.02 2.45
4941 5103 3.955650 TCTCACCCTTTCTTCGTAAGG 57.044 47.619 0.00 0.00 41.51 2.69
4999 5161 4.095483 CGTACCCGTCAGTAAGTCACTAAT 59.905 45.833 0.00 0.00 34.98 1.73
5014 5176 4.208047 GTCACTAATCATCATGTGTCTCGC 59.792 45.833 0.00 0.00 0.00 5.03
5019 5182 1.153289 ATCATGTGTCTCGCCTGCC 60.153 57.895 0.00 0.00 0.00 4.85
5021 5184 1.376424 CATGTGTCTCGCCTGCCTT 60.376 57.895 0.00 0.00 0.00 4.35
5022 5185 0.957395 CATGTGTCTCGCCTGCCTTT 60.957 55.000 0.00 0.00 0.00 3.11
5038 5201 5.352569 CCTGCCTTTAGTTCTGACTAATGTG 59.647 44.000 0.37 0.53 45.24 3.21
5043 5206 7.042335 CCTTTAGTTCTGACTAATGTGTAGGG 58.958 42.308 0.37 0.00 45.24 3.53
5115 5280 3.559655 TCACGACATCTGAACAAAACCAG 59.440 43.478 0.00 0.00 0.00 4.00
5247 5440 7.651027 ATTCTGCAACTTGCCTATTATTTCT 57.349 32.000 11.29 0.00 44.23 2.52
5272 5465 4.077300 AGACAAATCTCAAGCTGACACA 57.923 40.909 0.00 0.00 0.00 3.72
5298 5491 3.642848 ACCAGGTTTCACATTTGCTGATT 59.357 39.130 0.00 0.00 0.00 2.57
5347 5540 1.699634 TCTTACCTGCTTGCTGGTTCT 59.300 47.619 24.90 7.28 37.74 3.01
5365 5558 3.849563 TCTGTGCATCATCATCCATCA 57.150 42.857 0.00 0.00 0.00 3.07
5366 5559 3.473625 TCTGTGCATCATCATCCATCAC 58.526 45.455 0.00 0.00 0.00 3.06
5367 5560 2.215196 TGTGCATCATCATCCATCACG 58.785 47.619 0.00 0.00 0.00 4.35
5372 5565 0.107268 TCATCATCCATCACGGCCAG 59.893 55.000 2.24 0.00 33.14 4.85
5406 5599 4.986659 GCAGGCTTGCTTATTAATGAATGG 59.013 41.667 14.45 0.00 46.95 3.16
5407 5600 5.452356 GCAGGCTTGCTTATTAATGAATGGT 60.452 40.000 14.45 0.00 46.95 3.55
5409 5602 6.477688 CAGGCTTGCTTATTAATGAATGGTTG 59.522 38.462 0.00 0.00 0.00 3.77
5421 5615 1.820519 GAATGGTTGCATCAGAGCCAA 59.179 47.619 0.00 0.00 32.54 4.52
5424 5618 0.179119 GGTTGCATCAGAGCCAATGC 60.179 55.000 0.51 0.51 46.68 3.56
5433 5627 3.250617 TCAGAGCCAATGCCATCCTATA 58.749 45.455 0.00 0.00 38.69 1.31
5434 5628 3.262660 TCAGAGCCAATGCCATCCTATAG 59.737 47.826 0.00 0.00 38.69 1.31
5443 5637 8.802267 GCCAATGCCATCCTATAGTAAAAATAA 58.198 33.333 0.00 0.00 0.00 1.40
5471 5667 4.396166 ACAGAACAGACTTTTTGGACTGTG 59.604 41.667 0.00 0.00 41.73 3.66
5472 5668 3.378427 AGAACAGACTTTTTGGACTGTGC 59.622 43.478 0.00 0.00 41.73 4.57
5476 5672 4.757149 ACAGACTTTTTGGACTGTGCTATC 59.243 41.667 0.00 0.00 41.16 2.08
5481 5677 5.934625 ACTTTTTGGACTGTGCTATCTAGTG 59.065 40.000 0.00 0.00 0.00 2.74
5513 5709 0.324943 GCAAGCTCCCCTCACTGTTA 59.675 55.000 0.00 0.00 0.00 2.41
5527 5723 7.147724 CCCCTCACTGTTAGTGTGATATAAGAA 60.148 40.741 11.38 0.00 46.03 2.52
5551 5749 3.259064 TGGTTCTTCTTATCTTTCGCGG 58.741 45.455 6.13 0.00 0.00 6.46
5559 5757 2.596904 TATCTTTCGCGGGGAAGAAG 57.403 50.000 25.19 12.02 35.70 2.85
5560 5758 0.744771 ATCTTTCGCGGGGAAGAAGC 60.745 55.000 25.19 0.00 35.70 3.86
5566 5764 2.897350 CGGGGAAGAAGCCGATGC 60.897 66.667 0.00 0.00 37.95 3.91
5578 5776 2.024176 GCCGATGCTTCAGTAGGAAA 57.976 50.000 0.08 0.00 34.44 3.13
5579 5777 2.356135 GCCGATGCTTCAGTAGGAAAA 58.644 47.619 0.08 0.00 34.44 2.29
5580 5778 2.945668 GCCGATGCTTCAGTAGGAAAAT 59.054 45.455 0.08 0.00 34.44 1.82
5581 5779 4.127171 GCCGATGCTTCAGTAGGAAAATA 58.873 43.478 0.08 0.00 34.44 1.40
5582 5780 4.024809 GCCGATGCTTCAGTAGGAAAATAC 60.025 45.833 0.08 0.00 34.44 1.89
5583 5781 5.360591 CCGATGCTTCAGTAGGAAAATACT 58.639 41.667 0.08 0.00 36.41 2.12
5584 5782 5.463724 CCGATGCTTCAGTAGGAAAATACTC 59.536 44.000 0.08 0.00 33.68 2.59
5586 5784 6.758886 CGATGCTTCAGTAGGAAAATACTCTT 59.241 38.462 0.08 0.00 33.68 2.85
5587 5785 7.043059 CGATGCTTCAGTAGGAAAATACTCTTC 60.043 40.741 0.08 0.00 33.68 2.87
5588 5786 7.004555 TGCTTCAGTAGGAAAATACTCTTCA 57.995 36.000 0.00 0.00 33.68 3.02
5589 5787 7.099764 TGCTTCAGTAGGAAAATACTCTTCAG 58.900 38.462 0.00 0.00 33.68 3.02
5604 5804 6.773976 ACTCTTCAGTTTTCAACCATTTCA 57.226 33.333 0.00 0.00 0.00 2.69
5608 5808 4.681744 TCAGTTTTCAACCATTTCACTGC 58.318 39.130 0.00 0.00 32.00 4.40
5609 5809 3.486841 CAGTTTTCAACCATTTCACTGCG 59.513 43.478 0.00 0.00 0.00 5.18
5616 5827 1.812571 ACCATTTCACTGCGTCCATTC 59.187 47.619 0.00 0.00 0.00 2.67
5621 5832 1.795768 TCACTGCGTCCATTCAGTTC 58.204 50.000 0.00 0.00 41.19 3.01
5622 5833 1.344438 TCACTGCGTCCATTCAGTTCT 59.656 47.619 0.00 0.00 41.19 3.01
5637 5861 4.903054 TCAGTTCTCAACATTCTGCTCAT 58.097 39.130 0.00 0.00 0.00 2.90
5653 5877 3.630769 TGCTCATTTCTGCATCCATTCTC 59.369 43.478 0.00 0.00 33.94 2.87
5663 5887 7.787623 TCTGCATCCATTCTCTTGATATCTA 57.212 36.000 3.98 0.00 0.00 1.98
5668 5892 9.585099 GCATCCATTCTCTTGATATCTAGTAAG 57.415 37.037 12.92 5.55 0.00 2.34
5706 5938 9.995003 ATCAATAGAGTAGACATTTCATCCTTC 57.005 33.333 0.00 0.00 0.00 3.46
5740 5972 9.152595 CTTAACCTTTCTGAAGTCATACCTTAC 57.847 37.037 0.00 0.00 0.00 2.34
5744 5976 6.092807 CCTTTCTGAAGTCATACCTTACTTGC 59.907 42.308 0.00 0.00 36.10 4.01
5766 5998 3.318555 GCTGATCGCGCAGACTCG 61.319 66.667 16.55 0.00 38.14 4.18
5767 5999 2.101185 CTGATCGCGCAGACTCGT 59.899 61.111 8.75 0.00 38.14 4.18
5781 6020 3.996363 CAGACTCGTTTCATGATTGGTGA 59.004 43.478 0.00 0.00 0.00 4.02
5845 6084 3.834231 CTGTTGGGAGGGAACAATTCATT 59.166 43.478 0.00 0.00 33.01 2.57
5859 6098 4.761739 ACAATTCATTCGAACACATCCTGT 59.238 37.500 0.00 0.00 32.81 4.00
5930 6170 9.854668 TCTAGTTCAGATAGCTCTATTTAGTGT 57.145 33.333 0.00 0.00 0.00 3.55
5978 6222 5.278957 GCAGTTTTCTTTCAAGGGAAGCATA 60.279 40.000 0.00 0.00 33.82 3.14
5979 6223 6.152379 CAGTTTTCTTTCAAGGGAAGCATAC 58.848 40.000 0.00 0.00 33.82 2.39
6002 6353 4.100279 TCACCTTCTCTTTTTCCCCTTC 57.900 45.455 0.00 0.00 0.00 3.46
6019 6370 3.313526 CCCTTCTATATGTGTTGCAGTGC 59.686 47.826 8.58 8.58 0.00 4.40
6033 6384 1.152756 AGTGCGGCTTCCTTTGGTT 60.153 52.632 0.00 0.00 0.00 3.67
6043 6394 4.237724 GCTTCCTTTGGTTATTTGCTGAC 58.762 43.478 0.00 0.00 0.00 3.51
6055 6406 3.701205 TTTGCTGACAATCCTCTGCTA 57.299 42.857 0.00 0.00 36.39 3.49
6085 6436 8.589701 TTCTATATGTCAGTCTAGTCAACCAA 57.410 34.615 0.00 0.00 0.00 3.67
6099 6450 5.892348 AGTCAACCAATTACCTTCCATCTT 58.108 37.500 0.00 0.00 0.00 2.40
6117 6468 2.813226 TTCCTTGGGTTCGGCCATCG 62.813 60.000 2.24 0.00 39.65 3.84
6140 6491 5.980116 CGAGATCTTAAGTAGTCATGGGTTG 59.020 44.000 1.63 0.00 0.00 3.77
6152 6503 4.895889 AGTCATGGGTTGATCGAGATCTTA 59.104 41.667 13.47 0.59 38.60 2.10
6201 6560 6.763599 GCAATCTGCTTCCGTGTTTATCGG 62.764 50.000 0.00 0.00 43.75 4.18
6205 6564 1.006832 CTTCCGTGTTTATCGGCTGG 58.993 55.000 0.00 0.00 46.49 4.85
6244 6603 8.880878 TTATTTCTTGCTTTAAGGTTGGTTTC 57.119 30.769 0.00 0.00 37.01 2.78
6297 6656 6.973642 TCTTCCATCTTTCTTTCCATGGTAT 58.026 36.000 12.58 0.00 37.62 2.73
6313 6672 9.913310 TTCCATGGTATTACTACAATGAAATGA 57.087 29.630 12.58 0.00 40.44 2.57
6314 6673 9.913310 TCCATGGTATTACTACAATGAAATGAA 57.087 29.630 12.58 0.00 40.44 2.57
6345 6704 2.022195 GTGACTCCTATGCTACCGTGA 58.978 52.381 0.00 0.00 0.00 4.35
6371 6730 6.710692 AAAAATCATTGTTGAGGAAATCGC 57.289 33.333 0.00 0.00 34.73 4.58
6372 6731 5.649782 AAATCATTGTTGAGGAAATCGCT 57.350 34.783 0.00 0.00 34.73 4.93
6373 6732 6.757897 AAATCATTGTTGAGGAAATCGCTA 57.242 33.333 0.00 0.00 34.73 4.26
6374 6733 6.757897 AATCATTGTTGAGGAAATCGCTAA 57.242 33.333 0.00 0.00 34.73 3.09
6375 6734 5.545658 TCATTGTTGAGGAAATCGCTAAC 57.454 39.130 0.00 0.00 0.00 2.34
6376 6735 5.245531 TCATTGTTGAGGAAATCGCTAACT 58.754 37.500 0.00 0.00 0.00 2.24
6377 6736 5.122239 TCATTGTTGAGGAAATCGCTAACTG 59.878 40.000 0.00 0.00 0.00 3.16
6378 6737 3.334691 TGTTGAGGAAATCGCTAACTGG 58.665 45.455 0.00 0.00 0.00 4.00
6379 6738 3.244422 TGTTGAGGAAATCGCTAACTGGT 60.244 43.478 0.00 0.00 0.00 4.00
6380 6739 4.020928 TGTTGAGGAAATCGCTAACTGGTA 60.021 41.667 0.00 0.00 0.00 3.25
6381 6740 4.386867 TGAGGAAATCGCTAACTGGTAG 57.613 45.455 0.00 0.00 0.00 3.18
6389 6748 3.650409 CTAACTGGTAGCTGCTCGG 57.350 57.895 4.91 0.00 0.00 4.63
6390 6749 0.818296 CTAACTGGTAGCTGCTCGGT 59.182 55.000 4.91 0.41 0.00 4.69
6391 6750 1.204941 CTAACTGGTAGCTGCTCGGTT 59.795 52.381 16.67 16.67 34.74 4.44
6392 6751 0.320771 AACTGGTAGCTGCTCGGTTG 60.321 55.000 4.91 0.00 0.00 3.77
6393 6752 1.448540 CTGGTAGCTGCTCGGTTGG 60.449 63.158 4.91 0.00 0.00 3.77
6394 6753 2.820037 GGTAGCTGCTCGGTTGGC 60.820 66.667 4.91 0.00 0.00 4.52
6395 6754 2.266055 GTAGCTGCTCGGTTGGCT 59.734 61.111 4.91 0.00 38.62 4.75
6396 6755 2.103042 GTAGCTGCTCGGTTGGCTG 61.103 63.158 4.91 0.00 36.40 4.85
6397 6756 3.315142 TAGCTGCTCGGTTGGCTGG 62.315 63.158 4.91 0.00 36.40 4.85
6402 6761 4.379243 CTCGGTTGGCTGGCGAGT 62.379 66.667 0.00 0.00 0.00 4.18
6403 6762 2.992689 TCGGTTGGCTGGCGAGTA 60.993 61.111 0.00 0.00 0.00 2.59
6404 6763 2.509336 CGGTTGGCTGGCGAGTAG 60.509 66.667 0.00 0.00 0.00 2.57
6405 6764 2.125106 GGTTGGCTGGCGAGTAGG 60.125 66.667 0.00 0.00 0.00 3.18
6406 6765 2.125106 GTTGGCTGGCGAGTAGGG 60.125 66.667 0.00 0.00 0.00 3.53
6407 6766 3.399181 TTGGCTGGCGAGTAGGGG 61.399 66.667 0.00 0.00 0.00 4.79
6408 6767 3.916438 TTGGCTGGCGAGTAGGGGA 62.916 63.158 0.00 0.00 0.00 4.81
6409 6768 2.844839 GGCTGGCGAGTAGGGGAT 60.845 66.667 0.00 0.00 0.00 3.85
6410 6769 2.444256 GGCTGGCGAGTAGGGGATT 61.444 63.158 0.00 0.00 0.00 3.01
6411 6770 1.119574 GGCTGGCGAGTAGGGGATTA 61.120 60.000 0.00 0.00 0.00 1.75
6412 6771 0.756903 GCTGGCGAGTAGGGGATTAA 59.243 55.000 0.00 0.00 0.00 1.40
6413 6772 1.348036 GCTGGCGAGTAGGGGATTAAT 59.652 52.381 0.00 0.00 0.00 1.40
6414 6773 2.565834 GCTGGCGAGTAGGGGATTAATA 59.434 50.000 0.00 0.00 0.00 0.98
6415 6774 3.368531 GCTGGCGAGTAGGGGATTAATAG 60.369 52.174 0.00 0.00 0.00 1.73
6416 6775 3.170717 TGGCGAGTAGGGGATTAATAGG 58.829 50.000 0.00 0.00 0.00 2.57
6417 6776 2.093606 GGCGAGTAGGGGATTAATAGGC 60.094 54.545 0.00 0.00 0.00 3.93
6418 6777 2.832733 GCGAGTAGGGGATTAATAGGCT 59.167 50.000 0.00 0.00 0.00 4.58
6419 6778 4.021916 GCGAGTAGGGGATTAATAGGCTA 58.978 47.826 0.00 0.00 0.00 3.93
6420 6779 4.465305 GCGAGTAGGGGATTAATAGGCTAA 59.535 45.833 0.00 0.00 0.00 3.09
6421 6780 5.128991 GCGAGTAGGGGATTAATAGGCTAAT 59.871 44.000 0.00 0.00 0.00 1.73
6422 6781 6.351966 GCGAGTAGGGGATTAATAGGCTAATT 60.352 42.308 0.00 0.00 0.00 1.40
6423 6782 7.042335 CGAGTAGGGGATTAATAGGCTAATTG 58.958 42.308 0.00 0.00 0.00 2.32
6424 6783 7.272144 AGTAGGGGATTAATAGGCTAATTGG 57.728 40.000 0.00 0.00 0.00 3.16
6425 6784 4.935578 AGGGGATTAATAGGCTAATTGGC 58.064 43.478 5.01 5.01 42.15 4.52
6426 6785 4.356794 AGGGGATTAATAGGCTAATTGGCA 59.643 41.667 16.20 0.00 44.55 4.92
6427 6786 5.083821 GGGGATTAATAGGCTAATTGGCAA 58.916 41.667 16.20 0.68 44.55 4.52
6428 6787 5.185828 GGGGATTAATAGGCTAATTGGCAAG 59.814 44.000 16.20 0.00 44.55 4.01
6429 6788 5.775195 GGGATTAATAGGCTAATTGGCAAGT 59.225 40.000 16.20 5.58 44.55 3.16
6430 6789 6.267699 GGGATTAATAGGCTAATTGGCAAGTT 59.732 38.462 16.20 8.71 44.55 2.66
6431 6790 7.450323 GGGATTAATAGGCTAATTGGCAAGTTA 59.550 37.037 16.20 7.80 44.55 2.24
6432 6791 8.856103 GGATTAATAGGCTAATTGGCAAGTTAA 58.144 33.333 16.20 15.05 44.55 2.01
6448 6807 8.940768 GGCAAGTTAATTAGCCATTTAATCAA 57.059 30.769 8.25 0.00 46.26 2.57
6449 6808 9.546428 GGCAAGTTAATTAGCCATTTAATCAAT 57.454 29.630 8.25 0.00 46.26 2.57
6477 6836 9.768662 AATTGGATGATTTATCAGTTTATTGCC 57.231 29.630 0.00 0.00 40.64 4.52
6478 6837 8.537728 TTGGATGATTTATCAGTTTATTGCCT 57.462 30.769 0.00 0.00 40.64 4.75
6479 6838 9.639563 TTGGATGATTTATCAGTTTATTGCCTA 57.360 29.630 0.00 0.00 40.64 3.93
6480 6839 9.066892 TGGATGATTTATCAGTTTATTGCCTAC 57.933 33.333 0.00 0.00 40.64 3.18
6481 6840 9.289782 GGATGATTTATCAGTTTATTGCCTACT 57.710 33.333 0.00 0.00 40.64 2.57
6483 6842 8.365399 TGATTTATCAGTTTATTGCCTACTCG 57.635 34.615 0.00 0.00 32.11 4.18
6484 6843 7.441157 TGATTTATCAGTTTATTGCCTACTCGG 59.559 37.037 0.00 0.00 32.11 4.63
6485 6844 4.755266 ATCAGTTTATTGCCTACTCGGT 57.245 40.909 0.00 0.00 34.25 4.69
6486 6845 3.857052 TCAGTTTATTGCCTACTCGGTG 58.143 45.455 0.00 0.00 34.25 4.94
6487 6846 3.512329 TCAGTTTATTGCCTACTCGGTGA 59.488 43.478 0.00 0.00 34.25 4.02
6488 6847 3.617263 CAGTTTATTGCCTACTCGGTGAC 59.383 47.826 0.00 0.00 34.25 3.67
6489 6848 2.934553 GTTTATTGCCTACTCGGTGACC 59.065 50.000 0.00 0.00 34.25 4.02
6490 6849 1.117150 TATTGCCTACTCGGTGACCC 58.883 55.000 0.00 0.00 34.25 4.46
6491 6850 0.617820 ATTGCCTACTCGGTGACCCT 60.618 55.000 0.00 0.00 34.25 4.34
6492 6851 0.040058 TTGCCTACTCGGTGACCCTA 59.960 55.000 0.00 0.00 34.25 3.53
6493 6852 0.682209 TGCCTACTCGGTGACCCTAC 60.682 60.000 0.00 0.00 34.25 3.18
6494 6853 1.722636 GCCTACTCGGTGACCCTACG 61.723 65.000 0.00 0.00 34.25 3.51
6495 6854 0.107508 CCTACTCGGTGACCCTACGA 60.108 60.000 0.00 0.00 35.14 3.43
6497 6856 4.315588 CTCGGTGACCCTACGAGT 57.684 61.111 0.00 0.00 46.43 4.18
6498 6857 3.465990 CTCGGTGACCCTACGAGTA 57.534 57.895 0.00 0.00 46.43 2.59
6499 6858 1.742761 CTCGGTGACCCTACGAGTAA 58.257 55.000 0.00 0.00 46.43 2.24
6500 6859 1.669779 CTCGGTGACCCTACGAGTAAG 59.330 57.143 0.00 0.00 46.43 2.34
6501 6860 0.737219 CGGTGACCCTACGAGTAAGG 59.263 60.000 0.00 0.00 0.00 2.69
6502 6861 1.679944 CGGTGACCCTACGAGTAAGGA 60.680 57.143 5.01 0.00 0.00 3.36
6503 6862 2.664015 GGTGACCCTACGAGTAAGGAT 58.336 52.381 5.01 0.00 0.00 3.24
6504 6863 3.029570 GGTGACCCTACGAGTAAGGATT 58.970 50.000 5.01 0.00 0.00 3.01
6505 6864 4.210331 GGTGACCCTACGAGTAAGGATTA 58.790 47.826 5.01 0.00 0.00 1.75
6506 6865 4.646492 GGTGACCCTACGAGTAAGGATTAA 59.354 45.833 5.01 0.00 28.70 1.40
6507 6866 5.303845 GGTGACCCTACGAGTAAGGATTAAT 59.696 44.000 5.01 0.00 28.70 1.40
6508 6867 6.445475 GTGACCCTACGAGTAAGGATTAATC 58.555 44.000 6.93 6.93 41.83 1.75
6518 6877 7.781548 GAGTAAGGATTAATCGGCAAGTTAA 57.218 36.000 9.32 0.00 35.86 2.01
6519 6878 7.549615 AGTAAGGATTAATCGGCAAGTTAAC 57.450 36.000 9.32 0.00 28.70 2.01
6520 6879 7.336396 AGTAAGGATTAATCGGCAAGTTAACT 58.664 34.615 9.32 1.12 28.70 2.24
6521 6880 6.436843 AAGGATTAATCGGCAAGTTAACTG 57.563 37.500 9.34 4.88 0.00 3.16
6522 6881 4.881850 AGGATTAATCGGCAAGTTAACTGG 59.118 41.667 9.34 7.35 0.00 4.00
6523 6882 4.638865 GGATTAATCGGCAAGTTAACTGGT 59.361 41.667 9.34 0.00 0.00 4.00
6524 6883 5.124936 GGATTAATCGGCAAGTTAACTGGTT 59.875 40.000 9.34 1.66 0.00 3.67
6525 6884 6.316890 GGATTAATCGGCAAGTTAACTGGTTA 59.683 38.462 9.34 0.65 0.00 2.85
6526 6885 7.148205 GGATTAATCGGCAAGTTAACTGGTTAA 60.148 37.037 9.34 9.79 33.48 2.01
6527 6886 7.690952 TTAATCGGCAAGTTAACTGGTTAAT 57.309 32.000 9.34 0.00 37.37 1.40
6528 6887 5.560966 ATCGGCAAGTTAACTGGTTAATG 57.439 39.130 9.34 3.59 37.37 1.90
6529 6888 4.643463 TCGGCAAGTTAACTGGTTAATGA 58.357 39.130 9.34 0.00 37.37 2.57
6530 6889 5.064558 TCGGCAAGTTAACTGGTTAATGAA 58.935 37.500 9.34 0.00 37.37 2.57
6531 6890 5.049267 TCGGCAAGTTAACTGGTTAATGAAC 60.049 40.000 9.34 0.00 37.37 3.18
6532 6891 5.278071 CGGCAAGTTAACTGGTTAATGAACA 60.278 40.000 9.34 0.00 37.37 3.18
6533 6892 6.149633 GGCAAGTTAACTGGTTAATGAACAG 58.850 40.000 9.34 0.00 37.37 3.16
6534 6893 6.149633 GCAAGTTAACTGGTTAATGAACAGG 58.850 40.000 9.34 0.00 37.37 4.00
6535 6894 6.238925 GCAAGTTAACTGGTTAATGAACAGGT 60.239 38.462 9.34 0.00 37.37 4.00
6536 6895 7.040961 GCAAGTTAACTGGTTAATGAACAGGTA 60.041 37.037 9.34 0.00 37.37 3.08
6537 6896 8.842280 CAAGTTAACTGGTTAATGAACAGGTAA 58.158 33.333 9.34 0.00 37.37 2.85
6538 6897 8.983702 AGTTAACTGGTTAATGAACAGGTAAA 57.016 30.769 7.48 0.00 37.37 2.01
6539 6898 9.411189 AGTTAACTGGTTAATGAACAGGTAAAA 57.589 29.630 7.48 0.00 37.37 1.52
6608 6967 7.789273 AGATTGAACTGCTAGAAATCTCATG 57.211 36.000 0.00 0.00 33.39 3.07
6657 7024 7.933033 ACTTGAGGTTTAGTAAAACATACGGAA 59.067 33.333 13.08 0.00 45.68 4.30
6724 7092 3.679389 AGGACACAATGCTAAGTCAAGG 58.321 45.455 0.00 0.00 32.79 3.61
6838 7208 2.498167 CACCTTTCCTGTGGAGTTGAG 58.502 52.381 0.00 0.00 31.21 3.02
6841 7211 3.910627 ACCTTTCCTGTGGAGTTGAGTAT 59.089 43.478 0.00 0.00 31.21 2.12
6900 7270 7.941865 CATTATGCATGCATTAATAACGTTCC 58.058 34.615 36.23 0.00 37.82 3.62
6920 7290 8.091449 ACGTTCCTACTTACGCTACTATACTAT 58.909 37.037 0.00 0.00 41.24 2.12
6934 7312 9.623350 GCTACTATACTATACAGTACAAAAGCC 57.377 37.037 0.00 0.00 40.06 4.35
6968 7351 3.221771 TGGTCCCATTGTTCAGAACTTG 58.778 45.455 14.51 11.30 0.00 3.16
7028 7411 2.743636 TTGAAGTTCCGTAGCTCCAG 57.256 50.000 0.00 0.00 0.00 3.86
7074 7457 5.990996 CAGGATTTAAACAGCAAACCAATGT 59.009 36.000 0.00 0.00 0.00 2.71
7087 7470 5.455392 CAAACCAATGTCATTGTCTCTGAC 58.545 41.667 21.32 0.00 42.68 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.287194 AAGGGGGTGATGGGAGGG 60.287 66.667 0.00 0.00 0.00 4.30
57 58 1.000843 CTTTGCTAGGGTTTTGGTGGC 59.999 52.381 0.00 0.00 0.00 5.01
97 101 4.284550 TTGCCCTTCCCGCTGCTT 62.285 61.111 0.00 0.00 0.00 3.91
106 110 3.022710 GCCATTGCCCTTGCCCTTC 62.023 63.158 0.00 0.00 36.33 3.46
134 138 2.039624 AGCACGGGAGGATGAGGT 59.960 61.111 0.00 0.00 0.00 3.85
170 199 2.263540 GCGACCTAGGCGGAAACA 59.736 61.111 21.70 0.00 36.31 2.83
239 268 3.400054 GGGGTAGGGCAGCGACTT 61.400 66.667 0.00 0.00 0.00 3.01
377 407 4.521062 GGCATCCGTCGCTGCTCT 62.521 66.667 14.96 0.00 38.45 4.09
480 510 1.153329 ACAGTTGAAACGGTGGCGA 60.153 52.632 0.00 0.00 36.00 5.54
612 650 0.615850 GCAAGGGCTTACTCCAGACT 59.384 55.000 0.00 0.00 36.96 3.24
614 652 0.547712 AGGCAAGGGCTTACTCCAGA 60.548 55.000 0.00 0.00 40.87 3.86
621 659 1.002624 CCGACAAGGCAAGGGCTTA 60.003 57.895 4.65 0.00 46.59 3.09
740 799 0.255890 GCCAAATGGGTAGAGGCAGA 59.744 55.000 0.90 0.00 44.59 4.26
742 801 1.306296 GGCCAAATGGGTAGAGGCA 59.694 57.895 0.00 0.00 46.96 4.75
748 807 1.616930 TCCTCCGGCCAAATGGGTA 60.617 57.895 2.24 0.00 39.65 3.69
800 859 2.919856 ACAGGAGGCACGCTCACT 60.920 61.111 0.00 0.00 0.00 3.41
819 878 2.836372 TGTCTCCTCCTCTAGTGTCGTA 59.164 50.000 0.00 0.00 0.00 3.43
838 905 2.437359 GCGCTCAAGATGGGCTGT 60.437 61.111 0.00 0.00 43.01 4.40
846 913 1.004560 CCAACTCCAGCGCTCAAGA 60.005 57.895 19.61 11.08 0.00 3.02
860 927 1.628846 TCCCCTAAGAGCAACTCCAAC 59.371 52.381 0.00 0.00 0.00 3.77
861 928 2.038863 TCCCCTAAGAGCAACTCCAA 57.961 50.000 0.00 0.00 0.00 3.53
862 929 1.909302 CTTCCCCTAAGAGCAACTCCA 59.091 52.381 0.00 0.00 37.38 3.86
863 930 1.210722 CCTTCCCCTAAGAGCAACTCC 59.789 57.143 0.00 0.00 37.38 3.85
864 931 1.210722 CCCTTCCCCTAAGAGCAACTC 59.789 57.143 0.00 0.00 37.38 3.01
865 932 1.203440 TCCCTTCCCCTAAGAGCAACT 60.203 52.381 0.00 0.00 37.38 3.16
866 933 1.210722 CTCCCTTCCCCTAAGAGCAAC 59.789 57.143 0.00 0.00 37.38 4.17
867 934 1.584724 CTCCCTTCCCCTAAGAGCAA 58.415 55.000 0.00 0.00 37.38 3.91
868 935 0.326618 CCTCCCTTCCCCTAAGAGCA 60.327 60.000 0.00 0.00 37.38 4.26
869 936 0.031010 TCCTCCCTTCCCCTAAGAGC 60.031 60.000 0.00 0.00 37.38 4.09
870 937 2.570386 TTCCTCCCTTCCCCTAAGAG 57.430 55.000 0.00 0.00 37.38 2.85
871 938 3.123273 CAATTCCTCCCTTCCCCTAAGA 58.877 50.000 0.00 0.00 37.38 2.10
872 939 2.175715 CCAATTCCTCCCTTCCCCTAAG 59.824 54.545 0.00 0.00 34.73 2.18
873 940 2.214201 CCAATTCCTCCCTTCCCCTAA 58.786 52.381 0.00 0.00 0.00 2.69
874 941 1.630894 CCCAATTCCTCCCTTCCCCTA 60.631 57.143 0.00 0.00 0.00 3.53
875 942 0.926220 CCCAATTCCTCCCTTCCCCT 60.926 60.000 0.00 0.00 0.00 4.79
876 943 1.620818 CCCAATTCCTCCCTTCCCC 59.379 63.158 0.00 0.00 0.00 4.81
877 944 1.075970 GCCCAATTCCTCCCTTCCC 60.076 63.158 0.00 0.00 0.00 3.97
878 945 1.453928 CGCCCAATTCCTCCCTTCC 60.454 63.158 0.00 0.00 0.00 3.46
879 946 1.453928 CCGCCCAATTCCTCCCTTC 60.454 63.158 0.00 0.00 0.00 3.46
880 947 1.928567 TCCGCCCAATTCCTCCCTT 60.929 57.895 0.00 0.00 0.00 3.95
881 948 2.286121 TCCGCCCAATTCCTCCCT 60.286 61.111 0.00 0.00 0.00 4.20
882 949 2.124278 GTCCGCCCAATTCCTCCC 60.124 66.667 0.00 0.00 0.00 4.30
883 950 2.513897 CGTCCGCCCAATTCCTCC 60.514 66.667 0.00 0.00 0.00 4.30
884 951 2.106683 CACGTCCGCCCAATTCCTC 61.107 63.158 0.00 0.00 0.00 3.71
885 952 2.046314 CACGTCCGCCCAATTCCT 60.046 61.111 0.00 0.00 0.00 3.36
886 953 2.524951 TACCACGTCCGCCCAATTCC 62.525 60.000 0.00 0.00 0.00 3.01
887 954 1.078988 TACCACGTCCGCCCAATTC 60.079 57.895 0.00 0.00 0.00 2.17
888 955 1.376295 GTACCACGTCCGCCCAATT 60.376 57.895 0.00 0.00 0.00 2.32
889 956 2.266689 GTACCACGTCCGCCCAAT 59.733 61.111 0.00 0.00 0.00 3.16
890 957 2.918802 AGTACCACGTCCGCCCAA 60.919 61.111 0.00 0.00 0.00 4.12
891 958 3.687102 CAGTACCACGTCCGCCCA 61.687 66.667 0.00 0.00 0.00 5.36
892 959 3.637926 GACAGTACCACGTCCGCCC 62.638 68.421 0.00 0.00 0.00 6.13
893 960 2.126189 GACAGTACCACGTCCGCC 60.126 66.667 0.00 0.00 0.00 6.13
894 961 1.007038 TTGACAGTACCACGTCCGC 60.007 57.895 5.51 0.00 0.00 5.54
895 962 0.665369 GGTTGACAGTACCACGTCCG 60.665 60.000 5.51 0.00 35.67 4.79
896 963 0.665369 CGGTTGACAGTACCACGTCC 60.665 60.000 5.51 0.00 35.31 4.79
897 964 0.031178 ACGGTTGACAGTACCACGTC 59.969 55.000 0.00 0.00 35.31 4.34
898 965 0.249155 CACGGTTGACAGTACCACGT 60.249 55.000 0.00 0.00 35.31 4.49
899 966 1.554042 GCACGGTTGACAGTACCACG 61.554 60.000 0.00 0.00 35.31 4.94
900 967 1.226030 GGCACGGTTGACAGTACCAC 61.226 60.000 0.00 0.00 35.31 4.16
901 968 1.070105 GGCACGGTTGACAGTACCA 59.930 57.895 0.00 0.00 35.31 3.25
902 969 1.070105 TGGCACGGTTGACAGTACC 59.930 57.895 0.00 0.00 34.98 3.34
903 970 4.762825 TGGCACGGTTGACAGTAC 57.237 55.556 0.00 0.00 34.98 2.73
907 974 2.110213 GACCTGGCACGGTTGACA 59.890 61.111 9.50 0.00 39.03 3.58
908 975 1.525077 TTGACCTGGCACGGTTGAC 60.525 57.895 9.50 0.00 35.59 3.18
909 976 1.525077 GTTGACCTGGCACGGTTGA 60.525 57.895 9.50 0.86 35.59 3.18
910 977 2.892334 CGTTGACCTGGCACGGTTG 61.892 63.158 9.50 0.00 35.59 3.77
911 978 2.030490 TACGTTGACCTGGCACGGTT 62.030 55.000 15.50 1.77 35.59 4.44
912 979 2.500714 TACGTTGACCTGGCACGGT 61.501 57.895 15.50 8.14 37.88 4.83
913 980 2.025418 GTACGTTGACCTGGCACGG 61.025 63.158 15.50 2.01 0.00 4.94
914 981 1.282248 CTGTACGTTGACCTGGCACG 61.282 60.000 11.00 11.00 0.00 5.34
915 982 0.032952 TCTGTACGTTGACCTGGCAC 59.967 55.000 0.00 0.00 0.00 5.01
916 983 0.753867 TTCTGTACGTTGACCTGGCA 59.246 50.000 0.00 0.00 0.00 4.92
917 984 1.145803 GTTCTGTACGTTGACCTGGC 58.854 55.000 0.00 0.00 0.00 4.85
918 985 1.343465 AGGTTCTGTACGTTGACCTGG 59.657 52.381 0.00 0.00 0.00 4.45
919 986 2.404215 CAGGTTCTGTACGTTGACCTG 58.596 52.381 17.51 17.51 37.52 4.00
920 987 1.343465 CCAGGTTCTGTACGTTGACCT 59.657 52.381 0.00 0.00 0.00 3.85
921 988 1.607251 CCCAGGTTCTGTACGTTGACC 60.607 57.143 0.00 0.00 0.00 4.02
922 989 1.792006 CCCAGGTTCTGTACGTTGAC 58.208 55.000 0.00 0.00 0.00 3.18
923 990 0.034337 GCCCAGGTTCTGTACGTTGA 59.966 55.000 0.00 0.00 0.00 3.18
924 991 0.250124 TGCCCAGGTTCTGTACGTTG 60.250 55.000 0.00 0.00 0.00 4.10
925 992 0.690762 ATGCCCAGGTTCTGTACGTT 59.309 50.000 0.00 0.00 0.00 3.99
926 993 0.690762 AATGCCCAGGTTCTGTACGT 59.309 50.000 0.00 0.00 0.00 3.57
927 994 1.821216 AAATGCCCAGGTTCTGTACG 58.179 50.000 0.00 0.00 0.00 3.67
947 1014 0.475044 ACCAGCCCAGGTCGTAAAAA 59.525 50.000 0.00 0.00 37.28 1.94
948 1015 0.475044 AACCAGCCCAGGTCGTAAAA 59.525 50.000 0.00 0.00 42.25 1.52
949 1016 1.002315 GTAACCAGCCCAGGTCGTAAA 59.998 52.381 0.00 0.00 42.25 2.01
950 1017 0.609662 GTAACCAGCCCAGGTCGTAA 59.390 55.000 0.00 0.00 42.25 3.18
951 1018 1.597797 CGTAACCAGCCCAGGTCGTA 61.598 60.000 0.00 0.00 42.25 3.43
952 1019 2.939261 CGTAACCAGCCCAGGTCGT 61.939 63.158 0.00 0.00 42.25 4.34
953 1020 2.125673 CGTAACCAGCCCAGGTCG 60.126 66.667 0.00 0.00 42.25 4.79
954 1021 1.375523 CACGTAACCAGCCCAGGTC 60.376 63.158 0.00 0.00 42.25 3.85
955 1022 2.747686 CACGTAACCAGCCCAGGT 59.252 61.111 0.00 0.00 45.91 4.00
956 1023 2.046314 CCACGTAACCAGCCCAGG 60.046 66.667 0.00 0.00 0.00 4.45
957 1024 1.375523 GTCCACGTAACCAGCCCAG 60.376 63.158 0.00 0.00 0.00 4.45
958 1025 1.412453 AAGTCCACGTAACCAGCCCA 61.412 55.000 0.00 0.00 0.00 5.36
959 1026 0.953960 CAAGTCCACGTAACCAGCCC 60.954 60.000 0.00 0.00 0.00 5.19
960 1027 0.250166 ACAAGTCCACGTAACCAGCC 60.250 55.000 0.00 0.00 0.00 4.85
961 1028 1.589803 AACAAGTCCACGTAACCAGC 58.410 50.000 0.00 0.00 0.00 4.85
962 1029 2.220133 CGAAACAAGTCCACGTAACCAG 59.780 50.000 0.00 0.00 0.00 4.00
963 1030 2.203401 CGAAACAAGTCCACGTAACCA 58.797 47.619 0.00 0.00 0.00 3.67
964 1031 1.070376 GCGAAACAAGTCCACGTAACC 60.070 52.381 0.00 0.00 0.00 2.85
965 1032 1.070376 GGCGAAACAAGTCCACGTAAC 60.070 52.381 0.00 0.00 0.00 2.50
966 1033 1.219646 GGCGAAACAAGTCCACGTAA 58.780 50.000 0.00 0.00 0.00 3.18
967 1034 0.600782 GGGCGAAACAAGTCCACGTA 60.601 55.000 0.00 0.00 32.65 3.57
968 1035 1.890510 GGGCGAAACAAGTCCACGT 60.891 57.895 0.00 0.00 32.65 4.49
969 1036 2.613506 GGGGCGAAACAAGTCCACG 61.614 63.158 0.00 0.00 34.44 4.94
970 1037 1.104577 TTGGGGCGAAACAAGTCCAC 61.105 55.000 0.00 0.00 34.44 4.02
971 1038 0.821711 CTTGGGGCGAAACAAGTCCA 60.822 55.000 0.00 0.00 39.30 4.02
972 1039 1.524008 CCTTGGGGCGAAACAAGTCC 61.524 60.000 10.92 0.00 41.84 3.85
973 1040 1.956802 CCTTGGGGCGAAACAAGTC 59.043 57.895 10.92 0.00 41.84 3.01
974 1041 4.174305 CCTTGGGGCGAAACAAGT 57.826 55.556 10.92 0.00 41.84 3.16
984 1051 1.552799 GGATTTGTTGGGCCTTGGGG 61.553 60.000 4.53 0.00 0.00 4.96
985 1052 0.835543 TGGATTTGTTGGGCCTTGGG 60.836 55.000 4.53 0.00 0.00 4.12
986 1053 1.055040 TTGGATTTGTTGGGCCTTGG 58.945 50.000 4.53 0.00 0.00 3.61
987 1054 1.415659 TGTTGGATTTGTTGGGCCTTG 59.584 47.619 4.53 0.00 0.00 3.61
988 1055 1.799933 TGTTGGATTTGTTGGGCCTT 58.200 45.000 4.53 0.00 0.00 4.35
989 1056 1.693606 CTTGTTGGATTTGTTGGGCCT 59.306 47.619 4.53 0.00 0.00 5.19
990 1057 1.270785 CCTTGTTGGATTTGTTGGGCC 60.271 52.381 0.00 0.00 38.35 5.80
991 1058 1.877680 GCCTTGTTGGATTTGTTGGGC 60.878 52.381 0.00 0.00 38.35 5.36
992 1059 1.270785 GGCCTTGTTGGATTTGTTGGG 60.271 52.381 0.00 0.00 38.35 4.12
993 1060 1.693606 AGGCCTTGTTGGATTTGTTGG 59.306 47.619 0.00 0.00 38.35 3.77
994 1061 2.758009 CAGGCCTTGTTGGATTTGTTG 58.242 47.619 0.00 0.00 38.35 3.33
995 1062 1.070601 GCAGGCCTTGTTGGATTTGTT 59.929 47.619 0.00 0.00 38.35 2.83
996 1063 0.681175 GCAGGCCTTGTTGGATTTGT 59.319 50.000 0.00 0.00 38.35 2.83
997 1064 0.037046 GGCAGGCCTTGTTGGATTTG 60.037 55.000 0.00 0.00 38.35 2.32
998 1065 1.535204 CGGCAGGCCTTGTTGGATTT 61.535 55.000 0.00 0.00 38.35 2.17
999 1066 1.978617 CGGCAGGCCTTGTTGGATT 60.979 57.895 0.00 0.00 38.35 3.01
1000 1067 2.361610 CGGCAGGCCTTGTTGGAT 60.362 61.111 0.00 0.00 38.35 3.41
1002 1069 3.918253 TAGCGGCAGGCCTTGTTGG 62.918 63.158 0.00 0.00 45.17 3.77
1003 1070 2.359850 TAGCGGCAGGCCTTGTTG 60.360 61.111 0.00 0.00 45.17 3.33
1004 1071 2.359975 GTAGCGGCAGGCCTTGTT 60.360 61.111 0.00 0.00 45.17 2.83
1005 1072 4.410400 GGTAGCGGCAGGCCTTGT 62.410 66.667 0.00 0.00 45.17 3.16
1167 1272 2.407210 CGAGCCGAGAGAGCAGTC 59.593 66.667 0.00 0.00 0.00 3.51
1168 1273 3.137459 CCGAGCCGAGAGAGCAGT 61.137 66.667 0.00 0.00 0.00 4.40
1169 1274 4.567385 GCCGAGCCGAGAGAGCAG 62.567 72.222 0.00 0.00 0.00 4.24
1171 1276 4.567385 CTGCCGAGCCGAGAGAGC 62.567 72.222 0.00 0.00 0.00 4.09
1172 1277 3.898509 CCTGCCGAGCCGAGAGAG 61.899 72.222 0.00 0.00 0.00 3.20
1190 1295 4.637489 CGCTCTCCATCCTCGGCG 62.637 72.222 0.00 0.00 36.89 6.46
1192 1297 2.519541 TCCGCTCTCCATCCTCGG 60.520 66.667 0.00 0.00 41.30 4.63
1206 1311 3.382803 CTGGCCTCTGCTTCCTCCG 62.383 68.421 3.32 0.00 37.74 4.63
1443 1555 4.754372 TTGCAGTACAGATTCTTGCAAG 57.246 40.909 20.81 20.81 36.14 4.01
1508 1620 0.464554 GAGAGGCAATACAGGGTGGC 60.465 60.000 0.00 0.00 40.46 5.01
1546 1658 3.819337 GGTGCACTTGATAGCATCATGAT 59.181 43.478 17.98 1.18 43.44 2.45
1558 1670 0.393132 TTTGTCACCGGTGCACTTGA 60.393 50.000 30.25 13.81 0.00 3.02
1597 1709 2.927477 TGAGTAACGACATGCGATTTCC 59.073 45.455 14.88 3.87 44.57 3.13
1610 1722 1.060937 GCAAGCGCCATGAGTAACG 59.939 57.895 14.39 0.00 0.00 3.18
1618 1730 2.042831 GTGGAGAAGCAAGCGCCAT 61.043 57.895 2.29 0.00 39.83 4.40
1702 1817 2.508586 GAACCTCTGCTGGTCGGTCC 62.509 65.000 0.00 0.00 39.83 4.46
1705 1820 1.949847 ATCGAACCTCTGCTGGTCGG 61.950 60.000 0.00 0.00 39.83 4.79
1844 1959 1.330521 GCGCGATCAACCACATTGTAT 59.669 47.619 12.10 0.00 39.54 2.29
1920 2035 2.669569 AGCGCACCGTGCAAGAAT 60.670 55.556 22.89 1.07 45.36 2.40
1939 2054 7.119699 TCACAACATTTACAGCAAGATAAGGAG 59.880 37.037 0.00 0.00 0.00 3.69
1944 2059 6.472016 TCCTCACAACATTTACAGCAAGATA 58.528 36.000 0.00 0.00 0.00 1.98
2042 2157 0.883833 CAGCAAGAAATGAGCCGGTT 59.116 50.000 1.90 0.00 0.00 4.44
2048 2163 1.159285 TGTCGGCAGCAAGAAATGAG 58.841 50.000 0.00 0.00 0.00 2.90
2051 2166 0.813184 CCATGTCGGCAGCAAGAAAT 59.187 50.000 0.00 0.00 0.00 2.17
2054 2169 0.323302 TTACCATGTCGGCAGCAAGA 59.677 50.000 0.00 0.00 39.03 3.02
2135 2250 0.329261 TGGGCTTCATTGCTAGCAGT 59.671 50.000 18.45 12.85 39.15 4.40
2136 2251 1.466856 TTGGGCTTCATTGCTAGCAG 58.533 50.000 18.45 7.62 39.15 4.24
2169 2284 1.202110 GGATGCAGTCAGAACAATGCG 60.202 52.381 0.00 0.00 41.58 4.73
2589 2704 2.286294 GCATTTGGCGATCAGTAGACAG 59.714 50.000 0.00 0.00 0.00 3.51
2847 2962 1.427435 GAGCTCTCAACAGACACAGC 58.573 55.000 6.43 0.00 0.00 4.40
2849 2964 1.709578 AGGAGCTCTCAACAGACACA 58.290 50.000 14.64 0.00 0.00 3.72
3317 3432 7.817478 TCGTGCATTAATCTCTTCTTACAGAAA 59.183 33.333 0.00 0.00 33.19 2.52
3392 3507 5.971763 ACTAAACAATGGAAAGTTTGTGCA 58.028 33.333 0.00 0.00 38.33 4.57
3409 3524 5.122396 ACAGCAGCATAAGCAGTTACTAAAC 59.878 40.000 0.00 0.00 45.49 2.01
3581 3696 7.272244 TCTCGCACTTTTCCATCAATTCTATA 58.728 34.615 0.00 0.00 0.00 1.31
3759 3874 3.254166 GCTTCACTGCTTCCAAAATCTCA 59.746 43.478 0.00 0.00 0.00 3.27
3769 3884 1.457303 CTACACGTGCTTCACTGCTTC 59.543 52.381 17.22 0.00 31.34 3.86
3788 3903 4.010349 GCTAGTCCCAAAAACACTATGCT 58.990 43.478 0.00 0.00 0.00 3.79
3857 3972 1.516110 ATGAGATGGGGAGGGAACTG 58.484 55.000 0.00 0.00 44.43 3.16
3928 4043 3.019964 TGGCACAGCTACAAACCAG 57.980 52.632 0.00 0.00 0.00 4.00
3974 4089 0.182061 GGAGGAAGCATGATCTGGCA 59.818 55.000 10.96 0.00 0.00 4.92
3991 4106 0.546747 ACCGGGGTTTCTGATCTGGA 60.547 55.000 6.32 0.00 0.00 3.86
4019 4134 3.811083 ACAACATACCAAAACTGGACGA 58.189 40.909 0.00 0.00 0.00 4.20
4044 4159 3.753272 GGCTATTGCAGAACTTCAACTCA 59.247 43.478 0.66 0.00 41.91 3.41
4085 4200 5.068591 TCAGATTGTACATACACGTATGGCT 59.931 40.000 18.77 4.35 45.36 4.75
4086 4201 5.286438 TCAGATTGTACATACACGTATGGC 58.714 41.667 18.77 12.39 45.36 4.40
4087 4202 6.637254 GTCTCAGATTGTACATACACGTATGG 59.363 42.308 18.77 4.28 45.36 2.74
4089 4204 7.329588 TGTCTCAGATTGTACATACACGTAT 57.670 36.000 0.00 0.00 35.64 3.06
4090 4205 6.746745 TGTCTCAGATTGTACATACACGTA 57.253 37.500 0.00 0.00 35.64 3.57
4091 4206 5.638596 TGTCTCAGATTGTACATACACGT 57.361 39.130 0.00 0.00 35.64 4.49
4092 4207 6.322491 TCTTGTCTCAGATTGTACATACACG 58.678 40.000 0.00 0.00 35.64 4.49
4131 4248 1.537202 ACAGATTTTCCGCTGCTGTTC 59.463 47.619 0.00 0.00 36.49 3.18
4187 4305 2.615447 CACATCATCCTTCCATCCAACG 59.385 50.000 0.00 0.00 0.00 4.10
4281 4399 5.587388 CATCAATGCAGTTCCAAATAGGT 57.413 39.130 0.00 0.00 39.02 3.08
4365 4483 5.031066 ACTGAAACCTTAACACTAGTGCA 57.969 39.130 22.90 8.24 0.00 4.57
4449 4570 8.620416 TGCCTATTACATAAGCACAAATTGTAG 58.380 33.333 0.00 0.00 27.79 2.74
4471 4592 7.418254 CCATAGCCAGAAAAGATAAATTTGCCT 60.418 37.037 0.00 0.00 0.00 4.75
4482 4603 8.727100 TTATCTAGATCCATAGCCAGAAAAGA 57.273 34.615 8.95 0.00 0.00 2.52
4629 4787 3.126073 TCAGTCGCATCATATGAACAGC 58.874 45.455 9.99 12.89 0.00 4.40
4645 4803 6.402222 ACAGTCTGAGATATTTGGTTCAGTC 58.598 40.000 6.91 0.00 38.50 3.51
4684 4842 3.179830 CGACAGTTATTTCTGGACGGAG 58.820 50.000 0.00 0.00 39.48 4.63
4702 4860 5.624491 GTCTAGATACATCCGTTTAAGCGAC 59.376 44.000 13.69 0.00 0.00 5.19
4708 4866 8.839343 TGAAATACGTCTAGATACATCCGTTTA 58.161 33.333 8.82 0.00 0.00 2.01
4726 4884 5.569441 CGGATGTATCTAGCACTGAAATACG 59.431 44.000 0.00 0.00 0.00 3.06
4772 4931 3.487120 ACCAAATTATACTCCCTCCGC 57.513 47.619 0.00 0.00 0.00 5.54
4773 4932 5.433526 TCAAACCAAATTATACTCCCTCCG 58.566 41.667 0.00 0.00 0.00 4.63
4790 4949 5.757886 TCAAAACACGATCTCAATCAAACC 58.242 37.500 0.00 0.00 31.76 3.27
4795 4954 5.356882 TGGTTCAAAACACGATCTCAATC 57.643 39.130 0.00 0.00 0.00 2.67
4835 4994 9.208022 CTGACAGAAGAACATAGTTTGTCAATA 57.792 33.333 13.08 0.00 41.73 1.90
4845 5004 8.194104 AGTACATAAGCTGACAGAAGAACATAG 58.806 37.037 6.65 0.00 0.00 2.23
4892 5051 9.575868 TGTTAAATCAAAGTAGGGTTACAATCA 57.424 29.630 0.00 0.00 31.96 2.57
4999 5161 0.460811 GCAGGCGAGACACATGATGA 60.461 55.000 0.00 0.00 0.00 2.92
5022 5185 5.020795 TGCCCTACACATTAGTCAGAACTA 58.979 41.667 0.00 0.00 36.92 2.24
5038 5201 6.936900 ACTCATATGATTTGTACATGCCCTAC 59.063 38.462 5.72 0.00 0.00 3.18
5043 5206 7.440556 AGACTGACTCATATGATTTGTACATGC 59.559 37.037 5.72 0.00 0.00 4.06
5115 5280 5.762825 TGATCAGGCATGATTAAGAAAGC 57.237 39.130 16.04 0.36 46.39 3.51
5247 5440 4.039609 TGTCAGCTTGAGATTTGTCTCTGA 59.960 41.667 6.95 0.28 37.62 3.27
5266 5459 1.317613 GAAACCTGGTGCATGTGTCA 58.682 50.000 0.00 0.00 0.00 3.58
5272 5465 2.548493 GCAAATGTGAAACCTGGTGCAT 60.548 45.455 0.00 0.37 34.36 3.96
5298 5491 5.462530 TCTGTTTACCTCGTCAAGATTCA 57.537 39.130 0.00 0.00 0.00 2.57
5347 5540 2.215196 CGTGATGGATGATGATGCACA 58.785 47.619 0.00 0.00 31.94 4.57
5365 5558 1.672356 CAGCTTGCTTACTGGCCGT 60.672 57.895 0.00 1.25 0.00 5.68
5366 5559 3.044059 GCAGCTTGCTTACTGGCCG 62.044 63.158 0.00 0.00 40.96 6.13
5367 5560 1.930908 CTGCAGCTTGCTTACTGGCC 61.931 60.000 0.00 0.00 45.31 5.36
5402 5595 1.927487 TTGGCTCTGATGCAACCATT 58.073 45.000 0.00 0.00 34.04 3.16
5403 5596 1.754803 CATTGGCTCTGATGCAACCAT 59.245 47.619 0.00 0.00 34.04 3.55
5405 5598 0.179119 GCATTGGCTCTGATGCAACC 60.179 55.000 0.00 0.00 46.03 3.77
5406 5599 3.340727 GCATTGGCTCTGATGCAAC 57.659 52.632 0.00 0.00 46.03 4.17
5409 5602 0.314302 GATGGCATTGGCTCTGATGC 59.686 55.000 11.84 0.00 46.03 3.91
5443 5637 7.657761 CAGTCCAAAAAGTCTGTTCTGTAGTAT 59.342 37.037 0.00 0.00 0.00 2.12
5453 5647 3.004752 AGCACAGTCCAAAAAGTCTGT 57.995 42.857 0.00 0.00 41.02 3.41
5462 5656 3.447586 GTCCACTAGATAGCACAGTCCAA 59.552 47.826 0.00 0.00 0.00 3.53
5464 5658 3.024547 TGTCCACTAGATAGCACAGTCC 58.975 50.000 0.00 0.00 0.00 3.85
5471 5667 7.378966 TGCATAAACTATGTCCACTAGATAGC 58.621 38.462 0.00 0.00 35.34 2.97
5472 5668 9.416794 CTTGCATAAACTATGTCCACTAGATAG 57.583 37.037 0.00 0.00 37.45 2.08
5476 5672 6.051717 AGCTTGCATAAACTATGTCCACTAG 58.948 40.000 0.00 0.00 38.43 2.57
5481 5677 3.565902 GGGAGCTTGCATAAACTATGTCC 59.434 47.826 0.00 0.00 38.43 4.02
5513 5709 9.965902 AGAAGAACCATTTTCTTATATCACACT 57.034 29.630 0.00 0.00 38.73 3.55
5527 5723 5.163754 CCGCGAAAGATAAGAAGAACCATTT 60.164 40.000 8.23 0.00 0.00 2.32
5530 5726 3.259064 CCGCGAAAGATAAGAAGAACCA 58.741 45.455 8.23 0.00 0.00 3.67
5532 5728 2.608090 CCCCGCGAAAGATAAGAAGAAC 59.392 50.000 8.23 0.00 0.00 3.01
5534 5730 2.104967 TCCCCGCGAAAGATAAGAAGA 58.895 47.619 8.23 0.00 0.00 2.87
5548 5746 2.897350 CATCGGCTTCTTCCCCGC 60.897 66.667 0.00 0.00 44.01 6.13
5559 5757 2.024176 TTTCCTACTGAAGCATCGGC 57.976 50.000 0.00 0.00 41.61 5.54
5560 5758 5.360591 AGTATTTTCCTACTGAAGCATCGG 58.639 41.667 0.00 0.00 37.98 4.18
5566 5764 9.495572 AAACTGAAGAGTATTTTCCTACTGAAG 57.504 33.333 0.00 0.00 33.63 3.02
5586 5784 7.115201 ACGCAGTGAAATGGTTGAAAACTGA 62.115 40.000 4.20 0.00 44.55 3.41
5587 5785 4.969121 ACGCAGTGAAATGGTTGAAAACTG 60.969 41.667 0.00 0.00 44.55 3.16
5588 5786 3.130340 ACGCAGTGAAATGGTTGAAAACT 59.870 39.130 0.00 0.00 44.55 2.66
5589 5787 3.443976 ACGCAGTGAAATGGTTGAAAAC 58.556 40.909 0.00 0.00 44.44 2.43
5608 5808 4.692625 AGAATGTTGAGAACTGAATGGACG 59.307 41.667 0.00 0.00 0.00 4.79
5609 5809 5.618640 GCAGAATGTTGAGAACTGAATGGAC 60.619 44.000 0.00 0.00 39.31 4.02
5616 5827 5.624344 AATGAGCAGAATGTTGAGAACTG 57.376 39.130 0.00 0.00 39.31 3.16
5621 5832 4.082949 TGCAGAAATGAGCAGAATGTTGAG 60.083 41.667 0.00 0.00 39.31 3.02
5622 5833 3.822167 TGCAGAAATGAGCAGAATGTTGA 59.178 39.130 0.00 0.00 39.31 3.18
5637 5861 7.515586 AGATATCAAGAGAATGGATGCAGAAA 58.484 34.615 5.32 0.00 0.00 2.52
5706 5938 9.712305 TGACTTCAGAAAGGTTAAGATAAGAAG 57.288 33.333 0.00 0.00 36.78 2.85
5717 5949 7.317722 AGTAAGGTATGACTTCAGAAAGGTT 57.682 36.000 0.00 0.00 36.78 3.50
5729 5961 2.678336 GCAGGTGCAAGTAAGGTATGAC 59.322 50.000 0.00 0.00 41.59 3.06
5766 5998 2.821969 ACAGGCTCACCAATCATGAAAC 59.178 45.455 0.00 0.00 39.06 2.78
5767 5999 3.159213 ACAGGCTCACCAATCATGAAA 57.841 42.857 0.00 0.00 39.06 2.69
5781 6020 4.892934 TCCAACAAACAATAAGAACAGGCT 59.107 37.500 0.00 0.00 0.00 4.58
5930 6170 9.809096 TGCTTCAATGAATACAACAAAAAGTAA 57.191 25.926 0.00 0.00 0.00 2.24
5936 6176 8.715191 AAAACTGCTTCAATGAATACAACAAA 57.285 26.923 0.00 0.00 0.00 2.83
5949 6189 4.709397 TCCCTTGAAAGAAAACTGCTTCAA 59.291 37.500 0.00 0.00 0.00 2.69
5954 6194 3.181476 TGCTTCCCTTGAAAGAAAACTGC 60.181 43.478 0.00 0.00 0.00 4.40
5978 6222 3.463704 AGGGGAAAAAGAGAAGGTGAAGT 59.536 43.478 0.00 0.00 0.00 3.01
5979 6223 4.105754 AGGGGAAAAAGAGAAGGTGAAG 57.894 45.455 0.00 0.00 0.00 3.02
6002 6353 1.003545 GCCGCACTGCAACACATATAG 60.004 52.381 1.11 0.00 0.00 1.31
6019 6370 2.231235 AGCAAATAACCAAAGGAAGCCG 59.769 45.455 0.00 0.00 0.00 5.52
6033 6384 4.226427 AGCAGAGGATTGTCAGCAAATA 57.774 40.909 0.00 0.00 38.21 1.40
6043 6394 8.970020 ACATATAGAAGAGATAGCAGAGGATTG 58.030 37.037 0.00 0.00 0.00 2.67
6085 6436 3.858638 ACCCAAGGAAGATGGAAGGTAAT 59.141 43.478 0.00 0.00 40.56 1.89
6099 6450 2.674754 GATGGCCGAACCCAAGGA 59.325 61.111 0.00 0.00 38.61 3.36
6117 6468 7.113658 TCAACCCATGACTACTTAAGATCTC 57.886 40.000 10.09 0.60 31.50 2.75
6140 6491 6.201806 CCAATCACCACTTTAAGATCTCGATC 59.798 42.308 0.00 0.00 38.09 3.69
6152 6503 3.025322 TGGTCAACCAATCACCACTTT 57.975 42.857 0.00 0.00 44.35 2.66
6217 6576 9.845740 AAACCAACCTTAAAGCAAGAAATAAAT 57.154 25.926 0.00 0.00 36.22 1.40
6313 6672 5.523916 GCATAGGAGTCACGATAACACATTT 59.476 40.000 0.00 0.00 0.00 2.32
6314 6673 5.050490 GCATAGGAGTCACGATAACACATT 58.950 41.667 0.00 0.00 0.00 2.71
6315 6674 4.342378 AGCATAGGAGTCACGATAACACAT 59.658 41.667 0.00 0.00 0.00 3.21
6317 6676 4.308899 AGCATAGGAGTCACGATAACAC 57.691 45.455 0.00 0.00 0.00 3.32
6319 6678 4.613167 CGGTAGCATAGGAGTCACGATAAC 60.613 50.000 0.00 0.00 0.00 1.89
6320 6679 3.501062 CGGTAGCATAGGAGTCACGATAA 59.499 47.826 0.00 0.00 0.00 1.75
6322 6681 1.880675 CGGTAGCATAGGAGTCACGAT 59.119 52.381 0.00 0.00 0.00 3.73
6323 6682 1.306148 CGGTAGCATAGGAGTCACGA 58.694 55.000 0.00 0.00 0.00 4.35
6324 6683 1.022735 ACGGTAGCATAGGAGTCACG 58.977 55.000 0.00 0.00 0.00 4.35
6354 6713 5.327091 CAGTTAGCGATTTCCTCAACAATG 58.673 41.667 0.00 0.00 0.00 2.82
6355 6714 4.396166 CCAGTTAGCGATTTCCTCAACAAT 59.604 41.667 0.00 0.00 0.00 2.71
6356 6715 3.751175 CCAGTTAGCGATTTCCTCAACAA 59.249 43.478 0.00 0.00 0.00 2.83
6357 6716 3.244422 ACCAGTTAGCGATTTCCTCAACA 60.244 43.478 0.00 0.00 0.00 3.33
6358 6717 3.335579 ACCAGTTAGCGATTTCCTCAAC 58.664 45.455 0.00 0.00 0.00 3.18
6359 6718 3.695830 ACCAGTTAGCGATTTCCTCAA 57.304 42.857 0.00 0.00 0.00 3.02
6360 6719 3.430374 GCTACCAGTTAGCGATTTCCTCA 60.430 47.826 0.00 0.00 43.99 3.86
6361 6720 3.124560 GCTACCAGTTAGCGATTTCCTC 58.875 50.000 0.00 0.00 43.99 3.71
6362 6721 3.180891 GCTACCAGTTAGCGATTTCCT 57.819 47.619 0.00 0.00 43.99 3.36
6371 6730 0.818296 ACCGAGCAGCTACCAGTTAG 59.182 55.000 0.00 0.00 0.00 2.34
6372 6731 1.067142 CAACCGAGCAGCTACCAGTTA 60.067 52.381 0.00 0.00 0.00 2.24
6373 6732 0.320771 CAACCGAGCAGCTACCAGTT 60.321 55.000 0.00 0.00 0.00 3.16
6374 6733 1.293498 CAACCGAGCAGCTACCAGT 59.707 57.895 0.00 0.00 0.00 4.00
6375 6734 1.448540 CCAACCGAGCAGCTACCAG 60.449 63.158 0.00 0.00 0.00 4.00
6376 6735 2.662596 CCAACCGAGCAGCTACCA 59.337 61.111 0.00 0.00 0.00 3.25
6377 6736 2.820037 GCCAACCGAGCAGCTACC 60.820 66.667 0.00 0.00 0.00 3.18
6378 6737 2.103042 CAGCCAACCGAGCAGCTAC 61.103 63.158 0.00 0.00 33.33 3.58
6379 6738 2.265739 CAGCCAACCGAGCAGCTA 59.734 61.111 0.00 0.00 33.33 3.32
6380 6739 4.711949 CCAGCCAACCGAGCAGCT 62.712 66.667 0.00 0.00 35.52 4.24
6386 6745 2.992689 TACTCGCCAGCCAACCGA 60.993 61.111 0.00 0.00 0.00 4.69
6387 6746 2.509336 CTACTCGCCAGCCAACCG 60.509 66.667 0.00 0.00 0.00 4.44
6388 6747 2.125106 CCTACTCGCCAGCCAACC 60.125 66.667 0.00 0.00 0.00 3.77
6389 6748 2.125106 CCCTACTCGCCAGCCAAC 60.125 66.667 0.00 0.00 0.00 3.77
6390 6749 3.399181 CCCCTACTCGCCAGCCAA 61.399 66.667 0.00 0.00 0.00 4.52
6391 6750 3.696518 ATCCCCTACTCGCCAGCCA 62.697 63.158 0.00 0.00 0.00 4.75
6392 6751 1.119574 TAATCCCCTACTCGCCAGCC 61.120 60.000 0.00 0.00 0.00 4.85
6393 6752 0.756903 TTAATCCCCTACTCGCCAGC 59.243 55.000 0.00 0.00 0.00 4.85
6394 6753 3.195825 CCTATTAATCCCCTACTCGCCAG 59.804 52.174 0.00 0.00 0.00 4.85
6395 6754 3.170717 CCTATTAATCCCCTACTCGCCA 58.829 50.000 0.00 0.00 0.00 5.69
6396 6755 2.093606 GCCTATTAATCCCCTACTCGCC 60.094 54.545 0.00 0.00 0.00 5.54
6397 6756 2.832733 AGCCTATTAATCCCCTACTCGC 59.167 50.000 0.00 0.00 0.00 5.03
6398 6757 6.793505 ATTAGCCTATTAATCCCCTACTCG 57.206 41.667 0.00 0.00 0.00 4.18
6399 6758 7.339482 CCAATTAGCCTATTAATCCCCTACTC 58.661 42.308 0.00 0.00 0.00 2.59
6400 6759 6.297068 GCCAATTAGCCTATTAATCCCCTACT 60.297 42.308 0.00 0.00 0.00 2.57
6401 6760 5.886474 GCCAATTAGCCTATTAATCCCCTAC 59.114 44.000 0.00 0.00 0.00 3.18
6402 6761 5.553953 TGCCAATTAGCCTATTAATCCCCTA 59.446 40.000 0.00 0.00 0.00 3.53
6403 6762 4.356794 TGCCAATTAGCCTATTAATCCCCT 59.643 41.667 0.00 0.00 0.00 4.79
6404 6763 4.672899 TGCCAATTAGCCTATTAATCCCC 58.327 43.478 0.00 0.00 0.00 4.81
6405 6764 5.775195 ACTTGCCAATTAGCCTATTAATCCC 59.225 40.000 0.00 0.00 0.00 3.85
6406 6765 6.901081 ACTTGCCAATTAGCCTATTAATCC 57.099 37.500 0.00 0.00 0.00 3.01
6423 6782 8.940768 TTGATTAAATGGCTAATTAACTTGCC 57.059 30.769 2.28 2.28 45.10 4.52
6451 6810 9.768662 GGCAATAAACTGATAAATCATCCAATT 57.231 29.630 0.00 0.00 36.02 2.32
6452 6811 9.151177 AGGCAATAAACTGATAAATCATCCAAT 57.849 29.630 0.00 0.00 36.02 3.16
6453 6812 8.537728 AGGCAATAAACTGATAAATCATCCAA 57.462 30.769 0.00 0.00 36.02 3.53
6454 6813 9.066892 GTAGGCAATAAACTGATAAATCATCCA 57.933 33.333 0.00 0.00 36.02 3.41
6455 6814 9.289782 AGTAGGCAATAAACTGATAAATCATCC 57.710 33.333 0.00 0.00 36.02 3.51
6457 6816 8.993121 CGAGTAGGCAATAAACTGATAAATCAT 58.007 33.333 0.00 0.00 36.02 2.45
6458 6817 7.441157 CCGAGTAGGCAATAAACTGATAAATCA 59.559 37.037 0.00 0.00 35.16 2.57
6459 6818 7.441458 ACCGAGTAGGCAATAAACTGATAAATC 59.559 37.037 0.00 0.00 46.52 2.17
6460 6819 7.226720 CACCGAGTAGGCAATAAACTGATAAAT 59.773 37.037 0.00 0.00 46.52 1.40
6461 6820 6.537301 CACCGAGTAGGCAATAAACTGATAAA 59.463 38.462 0.00 0.00 46.52 1.40
6462 6821 6.046593 CACCGAGTAGGCAATAAACTGATAA 58.953 40.000 0.00 0.00 46.52 1.75
6463 6822 5.361571 TCACCGAGTAGGCAATAAACTGATA 59.638 40.000 0.00 0.00 46.52 2.15
6464 6823 4.161565 TCACCGAGTAGGCAATAAACTGAT 59.838 41.667 0.00 0.00 46.52 2.90
6465 6824 3.512329 TCACCGAGTAGGCAATAAACTGA 59.488 43.478 0.00 0.00 46.52 3.41
6466 6825 3.617263 GTCACCGAGTAGGCAATAAACTG 59.383 47.826 0.00 0.00 46.52 3.16
6467 6826 3.369157 GGTCACCGAGTAGGCAATAAACT 60.369 47.826 0.00 0.00 46.52 2.66
6468 6827 2.934553 GGTCACCGAGTAGGCAATAAAC 59.065 50.000 0.00 0.00 46.52 2.01
6469 6828 2.093341 GGGTCACCGAGTAGGCAATAAA 60.093 50.000 0.00 0.00 46.52 1.40
6470 6829 1.483415 GGGTCACCGAGTAGGCAATAA 59.517 52.381 0.00 0.00 46.52 1.40
6471 6830 1.117150 GGGTCACCGAGTAGGCAATA 58.883 55.000 0.00 0.00 46.52 1.90
6472 6831 0.617820 AGGGTCACCGAGTAGGCAAT 60.618 55.000 0.00 0.00 46.52 3.56
6473 6832 0.040058 TAGGGTCACCGAGTAGGCAA 59.960 55.000 0.00 0.00 46.52 4.52
6474 6833 0.682209 GTAGGGTCACCGAGTAGGCA 60.682 60.000 0.00 0.00 46.52 4.75
6475 6834 1.722636 CGTAGGGTCACCGAGTAGGC 61.723 65.000 0.00 0.00 46.52 3.93
6477 6836 1.297664 CTCGTAGGGTCACCGAGTAG 58.702 60.000 0.00 0.00 42.26 2.57
6478 6837 3.465990 CTCGTAGGGTCACCGAGTA 57.534 57.895 0.00 0.00 42.26 2.59
6479 6838 4.315588 CTCGTAGGGTCACCGAGT 57.684 61.111 0.00 0.00 42.26 4.18
6481 6840 1.679944 CCTTACTCGTAGGGTCACCGA 60.680 57.143 0.00 0.00 43.47 4.69
6482 6841 0.737219 CCTTACTCGTAGGGTCACCG 59.263 60.000 0.00 0.00 43.47 4.94
6483 6842 2.134789 TCCTTACTCGTAGGGTCACC 57.865 55.000 5.31 0.00 34.30 4.02
6484 6843 5.841957 TTAATCCTTACTCGTAGGGTCAC 57.158 43.478 5.31 0.00 34.30 3.67
6485 6844 5.240183 CGATTAATCCTTACTCGTAGGGTCA 59.760 44.000 9.87 0.00 34.73 4.02
6486 6845 5.335504 CCGATTAATCCTTACTCGTAGGGTC 60.336 48.000 9.87 0.00 36.82 4.46
6487 6846 4.522022 CCGATTAATCCTTACTCGTAGGGT 59.478 45.833 9.87 0.00 36.82 4.34
6488 6847 4.617762 GCCGATTAATCCTTACTCGTAGGG 60.618 50.000 9.87 0.00 36.82 3.53
6489 6848 4.022589 TGCCGATTAATCCTTACTCGTAGG 60.023 45.833 9.87 2.61 36.82 3.18
6490 6849 5.117355 TGCCGATTAATCCTTACTCGTAG 57.883 43.478 9.87 0.00 36.82 3.51
6491 6850 5.068198 ACTTGCCGATTAATCCTTACTCGTA 59.932 40.000 9.87 0.00 36.82 3.43
6492 6851 4.142004 ACTTGCCGATTAATCCTTACTCGT 60.142 41.667 9.87 0.00 36.82 4.18
6493 6852 4.369182 ACTTGCCGATTAATCCTTACTCG 58.631 43.478 9.87 0.00 37.84 4.18
6494 6853 7.494952 AGTTAACTTGCCGATTAATCCTTACTC 59.505 37.037 9.87 0.00 0.00 2.59
6495 6854 7.280205 CAGTTAACTTGCCGATTAATCCTTACT 59.720 37.037 5.07 0.00 0.00 2.24
6496 6855 7.407337 CAGTTAACTTGCCGATTAATCCTTAC 58.593 38.462 5.07 0.00 0.00 2.34
6497 6856 6.540914 CCAGTTAACTTGCCGATTAATCCTTA 59.459 38.462 5.07 0.00 0.00 2.69
6498 6857 5.357032 CCAGTTAACTTGCCGATTAATCCTT 59.643 40.000 5.07 0.00 0.00 3.36
6499 6858 4.881850 CCAGTTAACTTGCCGATTAATCCT 59.118 41.667 5.07 0.00 0.00 3.24
6500 6859 4.638865 ACCAGTTAACTTGCCGATTAATCC 59.361 41.667 5.07 0.00 0.00 3.01
6501 6860 5.813080 ACCAGTTAACTTGCCGATTAATC 57.187 39.130 5.07 5.30 0.00 1.75
6502 6861 7.690952 TTAACCAGTTAACTTGCCGATTAAT 57.309 32.000 5.07 0.00 30.78 1.40
6503 6862 7.390996 TCATTAACCAGTTAACTTGCCGATTAA 59.609 33.333 5.07 4.36 37.80 1.40
6504 6863 6.879993 TCATTAACCAGTTAACTTGCCGATTA 59.120 34.615 5.07 0.00 37.80 1.75
6505 6864 5.708230 TCATTAACCAGTTAACTTGCCGATT 59.292 36.000 5.07 0.00 37.80 3.34
6506 6865 5.250200 TCATTAACCAGTTAACTTGCCGAT 58.750 37.500 5.07 0.00 37.80 4.18
6507 6866 4.643463 TCATTAACCAGTTAACTTGCCGA 58.357 39.130 5.07 0.00 37.80 5.54
6508 6867 5.151389 GTTCATTAACCAGTTAACTTGCCG 58.849 41.667 5.07 0.00 37.80 5.69
6509 6868 6.079424 TGTTCATTAACCAGTTAACTTGCC 57.921 37.500 5.07 0.00 37.80 4.52
6510 6869 6.149633 CCTGTTCATTAACCAGTTAACTTGC 58.850 40.000 5.07 0.00 37.80 4.01
6511 6870 7.272037 ACCTGTTCATTAACCAGTTAACTTG 57.728 36.000 5.07 5.14 37.80 3.16
6512 6871 8.983702 TTACCTGTTCATTAACCAGTTAACTT 57.016 30.769 5.07 0.00 37.80 2.66
6513 6872 8.983702 TTTACCTGTTCATTAACCAGTTAACT 57.016 30.769 1.12 1.12 37.80 2.24
6555 6914 9.927081 ATCTGGTTATCCATCTTAAAGACAAAT 57.073 29.630 0.00 0.00 43.43 2.32
6581 6940 9.896645 ATGAGATTTCTAGCAGTTCAATCTTTA 57.103 29.630 0.00 0.00 34.92 1.85
6641 7000 9.976511 CTATGATTCCTTCCGTATGTTTTACTA 57.023 33.333 0.00 0.00 0.00 1.82
6642 7001 8.483758 ACTATGATTCCTTCCGTATGTTTTACT 58.516 33.333 0.00 0.00 0.00 2.24
6643 7002 8.658499 ACTATGATTCCTTCCGTATGTTTTAC 57.342 34.615 0.00 0.00 0.00 2.01
6645 7004 9.106070 GTTACTATGATTCCTTCCGTATGTTTT 57.894 33.333 0.00 0.00 0.00 2.43
6646 7005 8.483758 AGTTACTATGATTCCTTCCGTATGTTT 58.516 33.333 0.00 0.00 0.00 2.83
6647 7006 8.019656 AGTTACTATGATTCCTTCCGTATGTT 57.980 34.615 0.00 0.00 0.00 2.71
6648 7007 7.598759 AGTTACTATGATTCCTTCCGTATGT 57.401 36.000 0.00 0.00 0.00 2.29
6778 7146 7.838884 TCTGCATCCATGTTTGATAAATTCAA 58.161 30.769 0.00 0.00 42.62 2.69
6887 7257 8.624776 AGTAGCGTAAGTAGGAACGTTATTAAT 58.375 33.333 0.00 0.00 41.10 1.40
6920 7290 6.653320 CCAATCACTTAGGCTTTTGTACTGTA 59.347 38.462 0.00 0.00 0.00 2.74
6923 7293 4.459337 GCCAATCACTTAGGCTTTTGTACT 59.541 41.667 0.00 0.00 44.92 2.73
6934 7312 1.281867 TGGGACCAGCCAATCACTTAG 59.718 52.381 0.00 0.00 38.95 2.18
6935 7313 1.367346 TGGGACCAGCCAATCACTTA 58.633 50.000 0.00 0.00 38.95 2.24
6940 7318 1.478105 GAACAATGGGACCAGCCAATC 59.522 52.381 0.00 0.00 38.95 2.67
6968 7351 2.819422 CACAGCATGCATGTCAGTAC 57.181 50.000 26.79 9.88 42.53 2.73
7028 7411 6.931840 CCTGAATAAAATAGTCTACAGGAGGC 59.068 42.308 0.00 0.00 44.08 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.