Multiple sequence alignment - TraesCS5A01G531300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G531300 chr5A 100.000 4430 0 0 1 4430 689612910 689608481 0.000000e+00 8181.0
1 TraesCS5A01G531300 chr5A 95.122 41 2 0 3138 3178 421862324 421862364 1.030000e-06 65.8
2 TraesCS5A01G531300 chr5A 100.000 29 0 0 1766 1794 158182184 158182212 2.000000e-03 54.7
3 TraesCS5A01G531300 chr4B 92.098 1430 65 20 984 2385 651994086 651992677 0.000000e+00 1971.0
4 TraesCS5A01G531300 chr4B 92.387 775 46 8 3169 3936 651991920 651991152 0.000000e+00 1092.0
5 TraesCS5A01G531300 chr4B 91.561 474 38 2 2673 3144 651992381 651991908 0.000000e+00 652.0
6 TraesCS5A01G531300 chr4B 83.714 350 30 11 568 897 651994819 651994477 5.570000e-79 305.0
7 TraesCS5A01G531300 chr4B 87.833 263 13 9 2413 2665 651992677 651992424 1.560000e-74 291.0
8 TraesCS5A01G531300 chr4B 94.958 119 5 1 4312 4430 651991127 651991010 7.570000e-43 185.0
9 TraesCS5A01G531300 chr4D 92.459 1220 70 14 1927 3133 505332452 505331242 0.000000e+00 1724.0
10 TraesCS5A01G531300 chr4D 88.282 1374 80 29 561 1888 505333794 505332456 0.000000e+00 1570.0
11 TraesCS5A01G531300 chr4D 91.625 1003 65 7 3169 4168 505331242 505330256 0.000000e+00 1369.0
12 TraesCS5A01G531300 chr4D 89.098 266 18 7 4175 4430 505330212 505329948 1.990000e-83 320.0
13 TraesCS5A01G531300 chr4D 84.490 245 33 5 332 573 102147831 102148073 2.060000e-58 237.0
14 TraesCS5A01G531300 chr4D 82.400 125 22 0 1542 1666 4105590 4105714 4.680000e-20 110.0
15 TraesCS5A01G531300 chr4D 90.123 81 5 3 255 333 505333865 505333786 7.840000e-18 102.0
16 TraesCS5A01G531300 chr4D 100.000 29 0 0 1766 1794 12093709 12093737 2.000000e-03 54.7
17 TraesCS5A01G531300 chr5B 81.210 1107 180 25 2013 3112 419244095 419243010 0.000000e+00 867.0
18 TraesCS5A01G531300 chr5B 85.944 249 35 0 1450 1698 419245186 419244938 2.630000e-67 267.0
19 TraesCS5A01G531300 chr5B 94.203 138 8 0 1759 1896 419244304 419244167 1.250000e-50 211.0
20 TraesCS5A01G531300 chr5B 88.430 121 14 0 987 1107 419245705 419245585 3.570000e-31 147.0
21 TraesCS5A01G531300 chr6B 88.789 223 22 3 332 553 481042800 481043020 2.030000e-68 270.0
22 TraesCS5A01G531300 chr2D 86.364 242 31 2 329 569 34332249 34332009 3.400000e-66 263.0
23 TraesCS5A01G531300 chr6A 85.417 240 31 4 332 569 594757862 594757625 3.420000e-61 246.0
24 TraesCS5A01G531300 chr6A 84.375 96 15 0 3942 4037 587773205 587773110 1.310000e-15 95.3
25 TraesCS5A01G531300 chr3D 84.937 239 32 2 332 569 81373510 81373745 5.730000e-59 239.0
26 TraesCS5A01G531300 chr3D 83.471 242 35 5 329 569 589577954 589577717 2.070000e-53 220.0
27 TraesCS5A01G531300 chr3A 86.916 214 21 7 342 553 571174260 571174468 2.660000e-57 233.0
28 TraesCS5A01G531300 chr3A 84.519 239 32 5 332 569 537503277 537503511 9.580000e-57 231.0
29 TraesCS5A01G531300 chr7D 83.613 238 31 8 335 569 151765656 151765888 2.680000e-52 217.0
30 TraesCS5A01G531300 chr5D 84.118 170 23 3 3928 4094 484671357 484671189 1.280000e-35 161.0
31 TraesCS5A01G531300 chr1A 89.109 101 8 2 3942 4040 27127804 27127705 6.020000e-24 122.0
32 TraesCS5A01G531300 chr1A 95.238 42 1 1 3138 3178 574666459 574666418 1.030000e-06 65.8
33 TraesCS5A01G531300 chr7B 89.474 57 4 2 3942 3997 158541438 158541493 2.210000e-08 71.3
34 TraesCS5A01G531300 chr2B 97.500 40 1 0 3138 3177 568032436 568032397 7.950000e-08 69.4
35 TraesCS5A01G531300 chr2B 95.122 41 2 0 3138 3178 321696381 321696341 1.030000e-06 65.8
36 TraesCS5A01G531300 chr1D 95.349 43 2 0 3138 3180 393087870 393087912 7.950000e-08 69.4
37 TraesCS5A01G531300 chr3B 97.436 39 1 0 3138 3176 140399880 140399918 2.860000e-07 67.6
38 TraesCS5A01G531300 chr3B 97.368 38 1 0 3138 3175 748784707 748784744 1.030000e-06 65.8
39 TraesCS5A01G531300 chr2A 97.436 39 1 0 3138 3176 172348741 172348703 2.860000e-07 67.6
40 TraesCS5A01G531300 chr7A 95.238 42 1 1 3138 3178 161036578 161036537 1.030000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G531300 chr5A 689608481 689612910 4429 True 8181.000000 8181 100.000000 1 4430 1 chr5A.!!$R1 4429
1 TraesCS5A01G531300 chr4B 651991010 651994819 3809 True 749.333333 1971 90.425167 568 4430 6 chr4B.!!$R1 3862
2 TraesCS5A01G531300 chr4D 505329948 505333865 3917 True 1017.000000 1724 90.317400 255 4430 5 chr4D.!!$R1 4175
3 TraesCS5A01G531300 chr5B 419243010 419245705 2695 True 373.000000 867 87.446750 987 3112 4 chr5B.!!$R1 2125

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 360 0.177373 CCGTCCTGGTTTACTAGCCC 59.823 60.000 0.00 0.00 0.00 5.19 F
985 1008 0.389025 TCTCTCTCTTGCGCACACAA 59.611 50.000 11.12 0.00 0.00 3.33 F
2045 3055 0.390472 CGGGTGAGAAGCAAGGACTC 60.390 60.000 0.00 0.00 0.00 3.36 F
2379 3389 1.079127 ATCGAAGGCACCAGGTTCG 60.079 57.895 5.19 5.19 43.48 3.95 F
3167 4258 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1744 2172 0.385974 GCACGCACACAATTCCACTC 60.386 55.000 0.00 0.0 0.00 3.51 R
2551 3596 0.035056 CCATGGTGAGGTTGAGGTCC 60.035 60.000 2.57 0.0 0.00 4.46 R
3148 4239 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
3279 4373 0.716108 GGTTGACGTCATCGAAGCAG 59.284 55.000 20.80 0.0 40.62 4.24 R
4185 5286 1.000283 CTCGCTATTGGGCTAGGACTG 60.000 57.143 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.480760 ACATATTTTCAAGGCCACACTATTT 57.519 32.000 5.01 0.00 0.00 1.40
25 26 7.906327 ACATATTTTCAAGGCCACACTATTTT 58.094 30.769 5.01 0.00 0.00 1.82
26 27 7.818930 ACATATTTTCAAGGCCACACTATTTTG 59.181 33.333 5.01 0.00 0.00 2.44
27 28 5.606348 TTTTCAAGGCCACACTATTTTGT 57.394 34.783 5.01 0.00 0.00 2.83
28 29 4.846779 TTCAAGGCCACACTATTTTGTC 57.153 40.909 5.01 0.00 0.00 3.18
29 30 3.826524 TCAAGGCCACACTATTTTGTCA 58.173 40.909 5.01 0.00 0.00 3.58
30 31 4.406456 TCAAGGCCACACTATTTTGTCAT 58.594 39.130 5.01 0.00 0.00 3.06
31 32 5.565509 TCAAGGCCACACTATTTTGTCATA 58.434 37.500 5.01 0.00 0.00 2.15
32 33 5.647658 TCAAGGCCACACTATTTTGTCATAG 59.352 40.000 5.01 0.00 33.50 2.23
33 34 3.947834 AGGCCACACTATTTTGTCATAGC 59.052 43.478 5.01 0.00 30.74 2.97
34 35 3.242739 GGCCACACTATTTTGTCATAGCG 60.243 47.826 0.00 0.00 30.74 4.26
35 36 3.788797 GCCACACTATTTTGTCATAGCGC 60.789 47.826 0.00 0.00 30.74 5.92
36 37 3.373748 CCACACTATTTTGTCATAGCGCA 59.626 43.478 11.47 0.00 30.74 6.09
37 38 4.334443 CACACTATTTTGTCATAGCGCAC 58.666 43.478 11.47 0.00 30.74 5.34
38 39 4.093408 CACACTATTTTGTCATAGCGCACT 59.907 41.667 11.47 0.00 30.74 4.40
39 40 5.290885 CACACTATTTTGTCATAGCGCACTA 59.709 40.000 11.47 0.00 30.74 2.74
40 41 6.018751 CACACTATTTTGTCATAGCGCACTAT 60.019 38.462 11.47 0.00 39.82 2.12
41 42 6.538742 ACACTATTTTGTCATAGCGCACTATT 59.461 34.615 11.47 0.00 36.96 1.73
42 43 7.065803 ACACTATTTTGTCATAGCGCACTATTT 59.934 33.333 11.47 0.00 36.96 1.40
43 44 7.910162 CACTATTTTGTCATAGCGCACTATTTT 59.090 33.333 11.47 0.00 36.96 1.82
44 45 8.458843 ACTATTTTGTCATAGCGCACTATTTTT 58.541 29.630 11.47 0.00 36.96 1.94
66 67 7.692460 TTTTCATTGATTGTGATGCTACTCT 57.308 32.000 0.00 0.00 0.00 3.24
67 68 8.791327 TTTTCATTGATTGTGATGCTACTCTA 57.209 30.769 0.00 0.00 0.00 2.43
68 69 7.776933 TTCATTGATTGTGATGCTACTCTAC 57.223 36.000 0.00 0.00 0.00 2.59
69 70 6.283694 TCATTGATTGTGATGCTACTCTACC 58.716 40.000 0.00 0.00 0.00 3.18
70 71 4.307443 TGATTGTGATGCTACTCTACCG 57.693 45.455 0.00 0.00 0.00 4.02
71 72 3.699538 TGATTGTGATGCTACTCTACCGT 59.300 43.478 0.00 0.00 0.00 4.83
72 73 4.885325 TGATTGTGATGCTACTCTACCGTA 59.115 41.667 0.00 0.00 0.00 4.02
73 74 4.627611 TTGTGATGCTACTCTACCGTAC 57.372 45.455 0.00 0.00 0.00 3.67
74 75 3.882444 TGTGATGCTACTCTACCGTACT 58.118 45.455 0.00 0.00 0.00 2.73
75 76 3.875727 TGTGATGCTACTCTACCGTACTC 59.124 47.826 0.00 0.00 0.00 2.59
76 77 3.250521 GTGATGCTACTCTACCGTACTCC 59.749 52.174 0.00 0.00 0.00 3.85
77 78 3.118149 TGATGCTACTCTACCGTACTCCA 60.118 47.826 0.00 0.00 0.00 3.86
78 79 2.636830 TGCTACTCTACCGTACTCCAC 58.363 52.381 0.00 0.00 0.00 4.02
79 80 1.946081 GCTACTCTACCGTACTCCACC 59.054 57.143 0.00 0.00 0.00 4.61
80 81 2.208431 CTACTCTACCGTACTCCACCG 58.792 57.143 0.00 0.00 0.00 4.94
81 82 0.615331 ACTCTACCGTACTCCACCGA 59.385 55.000 0.00 0.00 0.00 4.69
82 83 1.211457 ACTCTACCGTACTCCACCGAT 59.789 52.381 0.00 0.00 0.00 4.18
83 84 2.295885 CTCTACCGTACTCCACCGATT 58.704 52.381 0.00 0.00 0.00 3.34
84 85 3.118261 ACTCTACCGTACTCCACCGATTA 60.118 47.826 0.00 0.00 0.00 1.75
85 86 3.879295 CTCTACCGTACTCCACCGATTAA 59.121 47.826 0.00 0.00 0.00 1.40
86 87 4.464008 TCTACCGTACTCCACCGATTAAT 58.536 43.478 0.00 0.00 0.00 1.40
87 88 4.889409 TCTACCGTACTCCACCGATTAATT 59.111 41.667 0.00 0.00 0.00 1.40
88 89 3.788937 ACCGTACTCCACCGATTAATTG 58.211 45.455 0.00 0.00 0.00 2.32
89 90 3.196254 ACCGTACTCCACCGATTAATTGT 59.804 43.478 1.99 0.00 0.00 2.71
90 91 4.402155 ACCGTACTCCACCGATTAATTGTA 59.598 41.667 1.99 0.00 0.00 2.41
91 92 5.105392 ACCGTACTCCACCGATTAATTGTAA 60.105 40.000 1.99 0.00 0.00 2.41
92 93 5.461078 CCGTACTCCACCGATTAATTGTAAG 59.539 44.000 1.99 1.99 0.00 2.34
93 94 6.267817 CGTACTCCACCGATTAATTGTAAGA 58.732 40.000 1.99 0.00 0.00 2.10
94 95 6.417044 CGTACTCCACCGATTAATTGTAAGAG 59.583 42.308 1.99 6.72 0.00 2.85
95 96 6.295719 ACTCCACCGATTAATTGTAAGAGT 57.704 37.500 10.68 10.68 0.00 3.24
96 97 7.414222 ACTCCACCGATTAATTGTAAGAGTA 57.586 36.000 13.26 0.00 0.00 2.59
97 98 7.263496 ACTCCACCGATTAATTGTAAGAGTAC 58.737 38.462 13.26 0.00 0.00 2.73
98 99 6.576185 TCCACCGATTAATTGTAAGAGTACC 58.424 40.000 1.99 0.00 0.00 3.34
99 100 5.756833 CCACCGATTAATTGTAAGAGTACCC 59.243 44.000 1.99 0.00 0.00 3.69
100 101 6.407752 CCACCGATTAATTGTAAGAGTACCCT 60.408 42.308 1.99 0.00 0.00 4.34
101 102 7.201938 CCACCGATTAATTGTAAGAGTACCCTA 60.202 40.741 1.99 0.00 0.00 3.53
102 103 8.365647 CACCGATTAATTGTAAGAGTACCCTAT 58.634 37.037 1.99 0.00 0.00 2.57
103 104 9.592196 ACCGATTAATTGTAAGAGTACCCTATA 57.408 33.333 1.99 0.00 0.00 1.31
165 166 9.515020 GTATTACATTGGTTCAATTGTACATGG 57.485 33.333 15.91 5.90 31.05 3.66
166 167 5.404466 ACATTGGTTCAATTGTACATGGG 57.596 39.130 15.91 6.20 31.05 4.00
167 168 3.951775 TTGGTTCAATTGTACATGGGC 57.048 42.857 15.91 0.51 0.00 5.36
168 169 2.175202 TGGTTCAATTGTACATGGGCC 58.825 47.619 15.91 0.00 0.00 5.80
169 170 2.225242 TGGTTCAATTGTACATGGGCCT 60.225 45.455 15.91 0.00 0.00 5.19
170 171 2.831526 GGTTCAATTGTACATGGGCCTT 59.168 45.455 15.91 0.00 0.00 4.35
171 172 3.119137 GGTTCAATTGTACATGGGCCTTC 60.119 47.826 15.91 0.00 0.00 3.46
172 173 3.737559 TCAATTGTACATGGGCCTTCT 57.262 42.857 4.53 0.00 0.00 2.85
173 174 4.853468 TCAATTGTACATGGGCCTTCTA 57.147 40.909 4.53 0.00 0.00 2.10
174 175 5.186256 TCAATTGTACATGGGCCTTCTAA 57.814 39.130 4.53 0.00 0.00 2.10
175 176 5.575157 TCAATTGTACATGGGCCTTCTAAA 58.425 37.500 4.53 0.00 0.00 1.85
176 177 5.417580 TCAATTGTACATGGGCCTTCTAAAC 59.582 40.000 4.53 0.00 0.00 2.01
177 178 3.359695 TGTACATGGGCCTTCTAAACC 57.640 47.619 4.53 0.00 0.00 3.27
178 179 2.285977 GTACATGGGCCTTCTAAACCG 58.714 52.381 4.53 0.00 0.00 4.44
179 180 0.988832 ACATGGGCCTTCTAAACCGA 59.011 50.000 4.53 0.00 0.00 4.69
180 181 1.353022 ACATGGGCCTTCTAAACCGAA 59.647 47.619 4.53 0.00 0.00 4.30
181 182 2.224917 ACATGGGCCTTCTAAACCGAAA 60.225 45.455 4.53 0.00 0.00 3.46
182 183 2.660670 TGGGCCTTCTAAACCGAAAA 57.339 45.000 4.53 0.00 0.00 2.29
183 184 2.510613 TGGGCCTTCTAAACCGAAAAG 58.489 47.619 4.53 0.00 0.00 2.27
185 186 2.553685 GGGCCTTCTAAACCGAAAAGGA 60.554 50.000 0.84 0.00 45.00 3.36
186 187 3.151554 GGCCTTCTAAACCGAAAAGGAA 58.848 45.455 0.00 0.00 45.00 3.36
187 188 3.190744 GGCCTTCTAAACCGAAAAGGAAG 59.809 47.826 0.00 0.00 45.00 3.46
191 192 6.819397 CTTCTAAACCGAAAAGGAAGGAAT 57.181 37.500 0.00 0.00 45.00 3.01
192 193 7.916914 CTTCTAAACCGAAAAGGAAGGAATA 57.083 36.000 0.00 0.00 45.00 1.75
193 194 8.507524 CTTCTAAACCGAAAAGGAAGGAATAT 57.492 34.615 0.00 0.00 45.00 1.28
194 195 8.873186 TTCTAAACCGAAAAGGAAGGAATATT 57.127 30.769 0.00 0.00 45.00 1.28
195 196 8.276252 TCTAAACCGAAAAGGAAGGAATATTG 57.724 34.615 0.00 0.00 45.00 1.90
196 197 8.104566 TCTAAACCGAAAAGGAAGGAATATTGA 58.895 33.333 0.00 0.00 45.00 2.57
197 198 7.533289 AAACCGAAAAGGAAGGAATATTGAA 57.467 32.000 0.00 0.00 45.00 2.69
198 199 6.510879 ACCGAAAAGGAAGGAATATTGAAC 57.489 37.500 0.00 0.00 45.00 3.18
199 200 6.246163 ACCGAAAAGGAAGGAATATTGAACT 58.754 36.000 0.00 0.00 45.00 3.01
200 201 6.719829 ACCGAAAAGGAAGGAATATTGAACTT 59.280 34.615 0.00 0.00 45.00 2.66
201 202 7.094334 ACCGAAAAGGAAGGAATATTGAACTTC 60.094 37.037 12.42 12.42 45.00 3.01
202 203 7.121315 CCGAAAAGGAAGGAATATTGAACTTCT 59.879 37.037 17.06 4.75 45.00 2.85
203 204 8.178313 CGAAAAGGAAGGAATATTGAACTTCTC 58.822 37.037 17.06 11.01 39.33 2.87
204 205 9.237187 GAAAAGGAAGGAATATTGAACTTCTCT 57.763 33.333 17.06 12.32 39.33 3.10
206 207 9.898152 AAAGGAAGGAATATTGAACTTCTCTAG 57.102 33.333 17.06 0.00 39.33 2.43
207 208 8.616799 AGGAAGGAATATTGAACTTCTCTAGT 57.383 34.615 17.06 0.00 39.33 2.57
209 210 9.674068 GGAAGGAATATTGAACTTCTCTAGTTT 57.326 33.333 17.06 0.00 47.00 2.66
218 219 9.847224 ATTGAACTTCTCTAGTTTTCTAAACCA 57.153 29.630 0.00 0.00 47.00 3.67
219 220 8.888579 TGAACTTCTCTAGTTTTCTAAACCAG 57.111 34.615 0.00 0.00 47.00 4.00
220 221 8.701895 TGAACTTCTCTAGTTTTCTAAACCAGA 58.298 33.333 0.00 0.00 47.00 3.86
221 222 9.198837 GAACTTCTCTAGTTTTCTAAACCAGAG 57.801 37.037 16.51 16.51 47.00 3.35
222 223 8.252624 ACTTCTCTAGTTTTCTAAACCAGAGT 57.747 34.615 19.71 6.51 30.90 3.24
223 224 8.706521 ACTTCTCTAGTTTTCTAAACCAGAGTT 58.293 33.333 19.71 9.02 32.84 3.01
226 227 8.804204 TCTCTAGTTTTCTAAACCAGAGTTAGG 58.196 37.037 19.71 3.91 34.19 2.69
227 228 8.716674 TCTAGTTTTCTAAACCAGAGTTAGGA 57.283 34.615 0.00 0.00 34.19 2.94
228 229 8.583296 TCTAGTTTTCTAAACCAGAGTTAGGAC 58.417 37.037 0.00 0.00 34.19 3.85
229 230 7.133133 AGTTTTCTAAACCAGAGTTAGGACA 57.867 36.000 0.00 0.00 34.19 4.02
230 231 7.746703 AGTTTTCTAAACCAGAGTTAGGACAT 58.253 34.615 0.00 0.00 34.19 3.06
231 232 7.878644 AGTTTTCTAAACCAGAGTTAGGACATC 59.121 37.037 0.00 0.00 34.19 3.06
232 233 5.934402 TCTAAACCAGAGTTAGGACATCC 57.066 43.478 0.00 0.00 34.19 3.51
233 234 6.023603 TTCTAAACCAGAGTTAGGACATCCT 58.976 40.000 5.59 5.59 41.45 3.24
234 235 6.154706 TTCTAAACCAGAGTTAGGACATCCTC 59.845 42.308 2.97 0.00 37.13 3.71
235 236 3.474798 ACCAGAGTTAGGACATCCTCA 57.525 47.619 2.97 0.00 44.77 3.86
236 237 3.100671 ACCAGAGTTAGGACATCCTCAC 58.899 50.000 2.97 3.76 44.77 3.51
237 238 2.432510 CCAGAGTTAGGACATCCTCACC 59.567 54.545 2.97 0.00 44.77 4.02
238 239 2.432510 CAGAGTTAGGACATCCTCACCC 59.567 54.545 2.97 0.00 44.77 4.61
239 240 1.409427 GAGTTAGGACATCCTCACCCG 59.591 57.143 2.97 0.00 44.77 5.28
240 241 0.179081 GTTAGGACATCCTCACCCGC 60.179 60.000 2.97 0.00 44.77 6.13
241 242 0.616395 TTAGGACATCCTCACCCGCA 60.616 55.000 2.97 0.00 44.77 5.69
242 243 0.616395 TAGGACATCCTCACCCGCAA 60.616 55.000 2.97 0.00 44.77 4.85
243 244 1.002624 GGACATCCTCACCCGCAAA 60.003 57.895 0.00 0.00 0.00 3.68
244 245 0.608035 GGACATCCTCACCCGCAAAA 60.608 55.000 0.00 0.00 0.00 2.44
245 246 1.243902 GACATCCTCACCCGCAAAAA 58.756 50.000 0.00 0.00 0.00 1.94
311 313 9.751542 GTGTGTAGCAATAATATGAGTACTTCT 57.248 33.333 0.00 0.00 0.00 2.85
317 319 7.227512 AGCAATAATATGAGTACTTCTGGTTGC 59.772 37.037 15.40 15.40 36.79 4.17
331 333 2.437085 GGTTGCCCACCTTAGCTATT 57.563 50.000 0.00 0.00 43.29 1.73
332 334 3.570912 GGTTGCCCACCTTAGCTATTA 57.429 47.619 0.00 0.00 43.29 0.98
333 335 3.211865 GGTTGCCCACCTTAGCTATTAC 58.788 50.000 0.00 0.00 43.29 1.89
334 336 3.118000 GGTTGCCCACCTTAGCTATTACT 60.118 47.826 0.00 0.00 43.29 2.24
335 337 4.102054 GGTTGCCCACCTTAGCTATTACTA 59.898 45.833 0.00 0.00 43.29 1.82
336 338 4.950205 TGCCCACCTTAGCTATTACTAC 57.050 45.455 0.00 0.00 0.00 2.73
337 339 3.644738 TGCCCACCTTAGCTATTACTACC 59.355 47.826 0.00 0.00 0.00 3.18
338 340 3.902467 GCCCACCTTAGCTATTACTACCT 59.098 47.826 0.00 0.00 0.00 3.08
339 341 4.021280 GCCCACCTTAGCTATTACTACCTC 60.021 50.000 0.00 0.00 0.00 3.85
340 342 4.527427 CCCACCTTAGCTATTACTACCTCC 59.473 50.000 0.00 0.00 0.00 4.30
341 343 4.217983 CCACCTTAGCTATTACTACCTCCG 59.782 50.000 0.00 0.00 0.00 4.63
342 344 4.826183 CACCTTAGCTATTACTACCTCCGT 59.174 45.833 0.00 0.00 0.00 4.69
343 345 5.048852 CACCTTAGCTATTACTACCTCCGTC 60.049 48.000 0.00 0.00 0.00 4.79
344 346 4.458642 CCTTAGCTATTACTACCTCCGTCC 59.541 50.000 0.00 0.00 0.00 4.79
345 347 3.880168 AGCTATTACTACCTCCGTCCT 57.120 47.619 0.00 0.00 0.00 3.85
346 348 3.488363 AGCTATTACTACCTCCGTCCTG 58.512 50.000 0.00 0.00 0.00 3.86
347 349 2.557490 GCTATTACTACCTCCGTCCTGG 59.443 54.545 0.00 0.00 40.09 4.45
348 350 2.842645 ATTACTACCTCCGTCCTGGT 57.157 50.000 0.00 0.00 39.52 4.00
349 351 2.610438 TTACTACCTCCGTCCTGGTT 57.390 50.000 0.00 0.00 39.52 3.67
350 352 2.610438 TACTACCTCCGTCCTGGTTT 57.390 50.000 0.00 0.00 39.52 3.27
351 353 2.610438 ACTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
352 354 2.174360 ACTACCTCCGTCCTGGTTTAC 58.826 52.381 0.00 0.00 39.52 2.01
353 355 2.225217 ACTACCTCCGTCCTGGTTTACT 60.225 50.000 0.00 0.00 39.52 2.24
354 356 2.610438 ACCTCCGTCCTGGTTTACTA 57.390 50.000 0.00 0.00 39.52 1.82
355 357 2.454538 ACCTCCGTCCTGGTTTACTAG 58.545 52.381 0.00 0.00 39.52 2.57
356 358 1.136500 CCTCCGTCCTGGTTTACTAGC 59.864 57.143 0.00 0.00 39.52 3.42
357 359 1.136500 CTCCGTCCTGGTTTACTAGCC 59.864 57.143 0.00 0.00 39.52 3.93
358 360 0.177373 CCGTCCTGGTTTACTAGCCC 59.823 60.000 0.00 0.00 0.00 5.19
359 361 1.192428 CGTCCTGGTTTACTAGCCCT 58.808 55.000 0.00 0.00 0.00 5.19
360 362 1.136500 CGTCCTGGTTTACTAGCCCTC 59.864 57.143 0.00 0.00 0.00 4.30
361 363 2.468915 GTCCTGGTTTACTAGCCCTCT 58.531 52.381 0.00 0.00 0.00 3.69
362 364 2.838813 GTCCTGGTTTACTAGCCCTCTT 59.161 50.000 0.00 0.00 0.00 2.85
363 365 3.105283 TCCTGGTTTACTAGCCCTCTTC 58.895 50.000 0.00 0.00 0.00 2.87
364 366 3.108376 CCTGGTTTACTAGCCCTCTTCT 58.892 50.000 0.00 0.00 0.00 2.85
365 367 3.519913 CCTGGTTTACTAGCCCTCTTCTT 59.480 47.826 0.00 0.00 0.00 2.52
366 368 4.715297 CCTGGTTTACTAGCCCTCTTCTTA 59.285 45.833 0.00 0.00 0.00 2.10
367 369 5.367060 CCTGGTTTACTAGCCCTCTTCTTAT 59.633 44.000 0.00 0.00 0.00 1.73
368 370 6.126739 CCTGGTTTACTAGCCCTCTTCTTATT 60.127 42.308 0.00 0.00 0.00 1.40
369 371 6.885922 TGGTTTACTAGCCCTCTTCTTATTC 58.114 40.000 0.00 0.00 0.00 1.75
370 372 6.672657 TGGTTTACTAGCCCTCTTCTTATTCT 59.327 38.462 0.00 0.00 0.00 2.40
371 373 6.987404 GGTTTACTAGCCCTCTTCTTATTCTG 59.013 42.308 0.00 0.00 0.00 3.02
372 374 6.732896 TTACTAGCCCTCTTCTTATTCTGG 57.267 41.667 0.00 0.00 0.00 3.86
373 375 4.625963 ACTAGCCCTCTTCTTATTCTGGT 58.374 43.478 0.00 0.00 0.00 4.00
374 376 5.033522 ACTAGCCCTCTTCTTATTCTGGTT 58.966 41.667 0.00 0.00 0.00 3.67
375 377 4.936685 AGCCCTCTTCTTATTCTGGTTT 57.063 40.909 0.00 0.00 0.00 3.27
376 378 6.672657 ACTAGCCCTCTTCTTATTCTGGTTTA 59.327 38.462 0.00 0.00 0.00 2.01
377 379 6.582929 AGCCCTCTTCTTATTCTGGTTTAT 57.417 37.500 0.00 0.00 0.00 1.40
378 380 7.691993 AGCCCTCTTCTTATTCTGGTTTATA 57.308 36.000 0.00 0.00 0.00 0.98
379 381 8.281529 AGCCCTCTTCTTATTCTGGTTTATAT 57.718 34.615 0.00 0.00 0.00 0.86
380 382 8.728098 AGCCCTCTTCTTATTCTGGTTTATATT 58.272 33.333 0.00 0.00 0.00 1.28
381 383 9.355916 GCCCTCTTCTTATTCTGGTTTATATTT 57.644 33.333 0.00 0.00 0.00 1.40
391 393 7.716799 TTCTGGTTTATATTTTGACCATGCT 57.283 32.000 0.00 0.00 41.04 3.79
392 394 7.716799 TCTGGTTTATATTTTGACCATGCTT 57.283 32.000 0.00 0.00 41.04 3.91
393 395 8.133024 TCTGGTTTATATTTTGACCATGCTTT 57.867 30.769 0.00 0.00 41.04 3.51
394 396 8.592809 TCTGGTTTATATTTTGACCATGCTTTT 58.407 29.630 0.00 0.00 41.04 2.27
395 397 9.868277 CTGGTTTATATTTTGACCATGCTTTTA 57.132 29.630 0.00 0.00 41.04 1.52
487 489 9.188588 CCAACAATATAATCTTTGATGACATGC 57.811 33.333 0.00 0.00 29.90 4.06
488 490 9.738832 CAACAATATAATCTTTGATGACATGCA 57.261 29.630 0.00 0.00 29.90 3.96
497 499 9.661563 AATCTTTGATGACATGCATTAACATTT 57.338 25.926 0.00 0.00 37.34 2.32
498 500 9.661563 ATCTTTGATGACATGCATTAACATTTT 57.338 25.926 0.00 0.00 37.34 1.82
499 501 8.927721 TCTTTGATGACATGCATTAACATTTTG 58.072 29.630 0.00 0.00 37.34 2.44
500 502 6.650239 TGATGACATGCATTAACATTTTGC 57.350 33.333 0.00 0.00 37.34 3.68
501 503 6.399743 TGATGACATGCATTAACATTTTGCT 58.600 32.000 0.00 0.00 37.34 3.91
502 504 7.545489 TGATGACATGCATTAACATTTTGCTA 58.455 30.769 0.00 0.00 37.34 3.49
503 505 7.703197 TGATGACATGCATTAACATTTTGCTAG 59.297 33.333 0.00 0.00 37.34 3.42
504 506 6.923012 TGACATGCATTAACATTTTGCTAGT 58.077 32.000 0.00 0.00 37.28 2.57
505 507 7.377398 TGACATGCATTAACATTTTGCTAGTT 58.623 30.769 0.00 0.00 37.28 2.24
506 508 8.518702 TGACATGCATTAACATTTTGCTAGTTA 58.481 29.630 0.00 0.00 37.28 2.24
507 509 9.352784 GACATGCATTAACATTTTGCTAGTTAA 57.647 29.630 0.00 0.00 40.65 2.01
508 510 9.703892 ACATGCATTAACATTTTGCTAGTTAAA 57.296 25.926 0.00 0.00 40.04 1.52
517 519 9.855021 AACATTTTGCTAGTTAAATATGTGGTC 57.145 29.630 14.76 0.00 0.00 4.02
518 520 9.019656 ACATTTTGCTAGTTAAATATGTGGTCA 57.980 29.630 14.06 0.00 0.00 4.02
519 521 9.853555 CATTTTGCTAGTTAAATATGTGGTCAA 57.146 29.630 0.00 0.00 0.00 3.18
545 547 9.990868 AATTTAACTCAAAATACTATGGGGACT 57.009 29.630 0.00 0.00 0.00 3.85
548 550 7.750947 AACTCAAAATACTATGGGGACTAGT 57.249 36.000 0.00 0.00 34.01 2.57
549 551 8.849543 AACTCAAAATACTATGGGGACTAGTA 57.150 34.615 0.00 0.00 36.42 1.82
550 552 8.849543 ACTCAAAATACTATGGGGACTAGTAA 57.150 34.615 0.00 0.00 35.80 2.24
551 553 9.275572 ACTCAAAATACTATGGGGACTAGTAAA 57.724 33.333 0.00 0.00 35.80 2.01
552 554 9.543783 CTCAAAATACTATGGGGACTAGTAAAC 57.456 37.037 0.00 0.00 35.80 2.01
553 555 9.275572 TCAAAATACTATGGGGACTAGTAAACT 57.724 33.333 0.00 0.00 35.80 2.66
585 587 8.213679 AGAGATAGTAATTTGATGGCTAGCAAA 58.786 33.333 15.98 15.98 45.16 3.68
607 609 4.448210 ACGTACTGCAACCCCAATAATAG 58.552 43.478 0.00 0.00 0.00 1.73
612 614 2.786445 TGCAACCCCAATAATAGCCCTA 59.214 45.455 0.00 0.00 0.00 3.53
632 634 8.425703 AGCCCTATTTGAAAATCTAGAGTACTC 58.574 37.037 15.41 15.41 0.00 2.59
634 636 7.868415 CCCTATTTGAAAATCTAGAGTACTCCG 59.132 40.741 19.38 10.98 0.00 4.63
637 639 6.829229 TTGAAAATCTAGAGTACTCCGACA 57.171 37.500 19.38 7.74 0.00 4.35
639 641 5.708697 TGAAAATCTAGAGTACTCCGACACA 59.291 40.000 19.38 10.93 0.00 3.72
640 642 6.208007 TGAAAATCTAGAGTACTCCGACACAA 59.792 38.462 19.38 0.00 0.00 3.33
666 668 3.708403 TGACTGCATGTGATTCCTCTT 57.292 42.857 0.00 0.00 0.00 2.85
677 679 6.796785 TGTGATTCCTCTTATGATCACTGA 57.203 37.500 14.20 0.00 39.14 3.41
681 683 6.838090 TGATTCCTCTTATGATCACTGAGTCT 59.162 38.462 15.69 4.93 0.00 3.24
688 690 8.539770 TCTTATGATCACTGAGTCTTTGTTTC 57.460 34.615 0.00 0.00 0.00 2.78
736 740 4.216257 GCTCAAGTGCCTCAAATTAAGACA 59.784 41.667 0.00 0.00 0.00 3.41
744 748 4.811063 GCCTCAAATTAAGACACCCCTCTT 60.811 45.833 0.00 0.00 34.72 2.85
758 762 2.165845 CCCCTCTTCTACCTACAACACG 59.834 54.545 0.00 0.00 0.00 4.49
766 770 2.538512 ACCTACAACACGAAAGACCC 57.461 50.000 0.00 0.00 0.00 4.46
826 847 2.929398 GGTTCAACTGCCAAAACAACAG 59.071 45.455 0.00 0.00 37.45 3.16
829 850 3.088532 TCAACTGCCAAAACAACAGACT 58.911 40.909 0.00 0.00 35.38 3.24
830 853 3.128589 TCAACTGCCAAAACAACAGACTC 59.871 43.478 0.00 0.00 35.38 3.36
875 898 6.073440 GGCCCGTGTATAAATATTGTGTACAG 60.073 42.308 0.00 4.34 0.00 2.74
878 901 7.384115 CCCGTGTATAAATATTGTGTACAGGAG 59.616 40.741 19.07 9.88 34.72 3.69
912 935 5.249393 ACTCACCTACACAAATCATCTCCTT 59.751 40.000 0.00 0.00 0.00 3.36
913 936 5.734720 TCACCTACACAAATCATCTCCTTC 58.265 41.667 0.00 0.00 0.00 3.46
914 937 5.485353 TCACCTACACAAATCATCTCCTTCT 59.515 40.000 0.00 0.00 0.00 2.85
915 938 6.013379 TCACCTACACAAATCATCTCCTTCTT 60.013 38.462 0.00 0.00 0.00 2.52
916 939 6.314896 CACCTACACAAATCATCTCCTTCTTC 59.685 42.308 0.00 0.00 0.00 2.87
917 940 5.819901 CCTACACAAATCATCTCCTTCTTCC 59.180 44.000 0.00 0.00 0.00 3.46
918 941 5.511386 ACACAAATCATCTCCTTCTTCCT 57.489 39.130 0.00 0.00 0.00 3.36
919 942 5.495640 ACACAAATCATCTCCTTCTTCCTC 58.504 41.667 0.00 0.00 0.00 3.71
920 943 5.250313 ACACAAATCATCTCCTTCTTCCTCT 59.750 40.000 0.00 0.00 0.00 3.69
921 944 5.816777 CACAAATCATCTCCTTCTTCCTCTC 59.183 44.000 0.00 0.00 0.00 3.20
922 945 5.725822 ACAAATCATCTCCTTCTTCCTCTCT 59.274 40.000 0.00 0.00 0.00 3.10
923 946 6.127083 ACAAATCATCTCCTTCTTCCTCTCTC 60.127 42.308 0.00 0.00 0.00 3.20
924 947 4.879295 TCATCTCCTTCTTCCTCTCTCT 57.121 45.455 0.00 0.00 0.00 3.10
925 948 4.792068 TCATCTCCTTCTTCCTCTCTCTC 58.208 47.826 0.00 0.00 0.00 3.20
926 949 4.478317 TCATCTCCTTCTTCCTCTCTCTCT 59.522 45.833 0.00 0.00 0.00 3.10
927 950 4.503714 TCTCCTTCTTCCTCTCTCTCTC 57.496 50.000 0.00 0.00 0.00 3.20
928 951 4.111577 TCTCCTTCTTCCTCTCTCTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
929 952 4.164221 TCTCCTTCTTCCTCTCTCTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
930 953 4.111577 TCCTTCTTCCTCTCTCTCTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
931 954 4.164221 TCCTTCTTCCTCTCTCTCTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
932 955 4.164988 CCTTCTTCCTCTCTCTCTCTCTCT 59.835 50.000 0.00 0.00 0.00 3.10
933 956 5.359194 TTCTTCCTCTCTCTCTCTCTCTC 57.641 47.826 0.00 0.00 0.00 3.20
934 957 4.624913 TCTTCCTCTCTCTCTCTCTCTCT 58.375 47.826 0.00 0.00 0.00 3.10
935 958 4.651503 TCTTCCTCTCTCTCTCTCTCTCTC 59.348 50.000 0.00 0.00 0.00 3.20
936 959 3.309296 TCCTCTCTCTCTCTCTCTCTCC 58.691 54.545 0.00 0.00 0.00 3.71
937 960 2.370189 CCTCTCTCTCTCTCTCTCTCCC 59.630 59.091 0.00 0.00 0.00 4.30
938 961 3.312890 CTCTCTCTCTCTCTCTCTCCCT 58.687 54.545 0.00 0.00 0.00 4.20
939 962 3.041211 TCTCTCTCTCTCTCTCTCCCTG 58.959 54.545 0.00 0.00 0.00 4.45
940 963 1.490490 TCTCTCTCTCTCTCTCCCTGC 59.510 57.143 0.00 0.00 0.00 4.85
941 964 1.492176 CTCTCTCTCTCTCTCCCTGCT 59.508 57.143 0.00 0.00 0.00 4.24
942 965 1.490490 TCTCTCTCTCTCTCCCTGCTC 59.510 57.143 0.00 0.00 0.00 4.26
943 966 1.492176 CTCTCTCTCTCTCCCTGCTCT 59.508 57.143 0.00 0.00 0.00 4.09
944 967 1.490490 TCTCTCTCTCTCCCTGCTCTC 59.510 57.143 0.00 0.00 0.00 3.20
945 968 0.550914 TCTCTCTCTCCCTGCTCTCC 59.449 60.000 0.00 0.00 0.00 3.71
946 969 0.468029 CTCTCTCTCCCTGCTCTCCC 60.468 65.000 0.00 0.00 0.00 4.30
947 970 0.923729 TCTCTCTCCCTGCTCTCCCT 60.924 60.000 0.00 0.00 0.00 4.20
948 971 0.756442 CTCTCTCCCTGCTCTCCCTG 60.756 65.000 0.00 0.00 0.00 4.45
975 998 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
976 999 5.362143 TCTCTCTCTCTCTCTCTCTCTCTTG 59.638 48.000 0.00 0.00 0.00 3.02
982 1005 0.525311 CTCTCTCTCTCTTGCGCACA 59.475 55.000 11.12 0.00 0.00 4.57
985 1008 0.389025 TCTCTCTCTTGCGCACACAA 59.611 50.000 11.12 0.00 0.00 3.33
1123 1449 5.685068 GCATGCACGCATAATGTTTATACAA 59.315 36.000 14.21 0.00 34.89 2.41
1234 1624 7.792374 ATTAGTTCTACTGTTGGTGCATATG 57.208 36.000 0.00 0.00 0.00 1.78
1277 1667 6.892456 AGATACTGAGAGTTCAACCTGATGTA 59.108 38.462 0.00 0.00 31.69 2.29
1427 1823 2.173782 TCCCTTTGCTTGAGTGTTGGTA 59.826 45.455 0.00 0.00 0.00 3.25
1439 1835 8.726988 GCTTGAGTGTTGGTACTGAATAATTTA 58.273 33.333 0.00 0.00 0.00 1.40
1504 1930 3.003763 GGGAGAAGCACGGGGACT 61.004 66.667 0.00 0.00 0.00 3.85
1524 1950 5.474876 GGACTGGTTTCAATCTTTCATCTGT 59.525 40.000 0.00 0.00 0.00 3.41
1569 1995 2.027745 AGATGTGATGCGTGAGGACTTT 60.028 45.455 0.00 0.00 0.00 2.66
1744 2172 0.530744 TAGGTGCAGCAAGAGTACGG 59.469 55.000 19.63 0.00 0.00 4.02
1746 2174 0.737715 GGTGCAGCAAGAGTACGGAG 60.738 60.000 11.86 0.00 0.00 4.63
1749 2177 0.737715 GCAGCAAGAGTACGGAGTGG 60.738 60.000 0.00 0.00 45.73 4.00
1750 2178 0.888619 CAGCAAGAGTACGGAGTGGA 59.111 55.000 0.00 0.00 45.73 4.02
1751 2179 1.272490 CAGCAAGAGTACGGAGTGGAA 59.728 52.381 0.00 0.00 45.73 3.53
1896 2902 7.201496 CGTACACCAACTCTACAAATTACCATC 60.201 40.741 0.00 0.00 0.00 3.51
1897 2903 6.539173 ACACCAACTCTACAAATTACCATCA 58.461 36.000 0.00 0.00 0.00 3.07
1898 2904 7.175104 ACACCAACTCTACAAATTACCATCAT 58.825 34.615 0.00 0.00 0.00 2.45
1899 2905 7.121168 ACACCAACTCTACAAATTACCATCATG 59.879 37.037 0.00 0.00 0.00 3.07
1902 2911 7.201732 CCAACTCTACAAATTACCATCATGGAC 60.202 40.741 11.90 0.00 40.96 4.02
1920 2929 4.517285 TGGACTATGAACTTGGATGCTTC 58.483 43.478 0.00 0.00 0.00 3.86
1921 2930 4.225942 TGGACTATGAACTTGGATGCTTCT 59.774 41.667 0.00 0.00 0.00 2.85
1923 2932 4.521146 ACTATGAACTTGGATGCTTCTGG 58.479 43.478 0.00 0.00 0.00 3.86
1924 2933 2.205022 TGAACTTGGATGCTTCTGGG 57.795 50.000 0.00 0.00 0.00 4.45
1925 2934 1.272092 TGAACTTGGATGCTTCTGGGG 60.272 52.381 0.00 0.00 0.00 4.96
1937 2946 4.450053 TGCTTCTGGGGAAAACAAAAATG 58.550 39.130 0.00 0.00 0.00 2.32
2024 3034 2.862541 TGAGTTGGTGCAGCTTATGTT 58.137 42.857 18.08 0.00 0.00 2.71
2045 3055 0.390472 CGGGTGAGAAGCAAGGACTC 60.390 60.000 0.00 0.00 0.00 3.36
2178 3188 3.644399 GACTCGTCGCCCAAGTCCC 62.644 68.421 1.37 0.00 34.63 4.46
2286 3296 2.769652 GATGGTGCTGGGCCAGTTGA 62.770 60.000 32.80 15.80 39.65 3.18
2295 3305 1.168714 GGGCCAGTTGAAGTGTGATC 58.831 55.000 4.39 0.00 0.00 2.92
2379 3389 1.079127 ATCGAAGGCACCAGGTTCG 60.079 57.895 5.19 5.19 43.48 3.95
2387 3423 1.602377 GGCACCAGGTTCGTTATATGC 59.398 52.381 0.00 0.00 0.00 3.14
2392 3428 4.508124 CACCAGGTTCGTTATATGCTTCTC 59.492 45.833 0.00 0.00 0.00 2.87
2393 3429 4.406003 ACCAGGTTCGTTATATGCTTCTCT 59.594 41.667 0.00 0.00 0.00 3.10
2394 3430 5.104900 ACCAGGTTCGTTATATGCTTCTCTT 60.105 40.000 0.00 0.00 0.00 2.85
2402 3438 6.761714 TCGTTATATGCTTCTCTTTCCTTTCC 59.238 38.462 0.00 0.00 0.00 3.13
2410 3446 1.632920 CTCTTTCCTTTCCCTGCCTCT 59.367 52.381 0.00 0.00 0.00 3.69
2551 3596 2.386661 ACCTGACATACTTCTTGGCG 57.613 50.000 0.00 0.00 0.00 5.69
2624 3669 8.792633 TGCAGTTAATTAACATATATTCCAGGC 58.207 33.333 26.06 13.23 38.62 4.85
2656 3706 1.351017 GGTTGTCAGTCCAGGAATCCA 59.649 52.381 0.61 0.00 0.00 3.41
2671 3758 7.180946 TCCAGGAATCCATACAGTAAGATATGG 59.819 40.741 0.61 4.22 46.38 2.74
2685 3772 5.695851 AAGATATGGATTTCAACGATGGC 57.304 39.130 0.00 0.00 0.00 4.40
2701 3788 1.226379 GGCGGTGAATGCAATCGTG 60.226 57.895 0.00 0.00 0.00 4.35
3043 4130 2.363018 TCCTCCACCTGCTCTCCG 60.363 66.667 0.00 0.00 0.00 4.63
3116 4207 3.396560 GCAAGTACAGGTTAGTCGGTTT 58.603 45.455 0.00 0.00 0.00 3.27
3130 4221 3.816523 AGTCGGTTTAAATCTTTTGCGGA 59.183 39.130 0.00 0.00 0.00 5.54
3132 4223 4.557301 GTCGGTTTAAATCTTTTGCGGATG 59.443 41.667 0.00 0.00 0.00 3.51
3133 4224 3.857093 CGGTTTAAATCTTTTGCGGATGG 59.143 43.478 0.00 0.00 0.00 3.51
3134 4225 3.616821 GGTTTAAATCTTTTGCGGATGGC 59.383 43.478 0.00 0.00 43.96 4.40
3147 4238 3.779759 GCGGATGGCATTTTTGATAACA 58.220 40.909 0.00 0.00 42.87 2.41
3148 4239 4.180057 GCGGATGGCATTTTTGATAACAA 58.820 39.130 0.00 0.00 42.87 2.83
3149 4240 4.268405 GCGGATGGCATTTTTGATAACAAG 59.732 41.667 0.00 0.00 42.87 3.16
3150 4241 5.410067 CGGATGGCATTTTTGATAACAAGT 58.590 37.500 0.00 0.00 37.32 3.16
3151 4242 6.559810 CGGATGGCATTTTTGATAACAAGTA 58.440 36.000 0.00 0.00 37.32 2.24
3152 4243 7.202526 CGGATGGCATTTTTGATAACAAGTAT 58.797 34.615 0.00 0.00 37.32 2.12
3153 4244 7.706179 CGGATGGCATTTTTGATAACAAGTATT 59.294 33.333 0.00 0.00 37.32 1.89
3154 4245 9.382275 GGATGGCATTTTTGATAACAAGTATTT 57.618 29.630 0.00 0.00 37.32 1.40
3156 4247 8.770438 TGGCATTTTTGATAACAAGTATTTCC 57.230 30.769 0.00 0.00 37.32 3.13
3157 4248 7.543868 TGGCATTTTTGATAACAAGTATTTCCG 59.456 33.333 0.00 0.00 37.32 4.30
3158 4249 7.010091 GGCATTTTTGATAACAAGTATTTCCGG 59.990 37.037 0.00 0.00 37.32 5.14
3159 4250 7.757624 GCATTTTTGATAACAAGTATTTCCGGA 59.242 33.333 0.00 0.00 37.32 5.14
3160 4251 9.072294 CATTTTTGATAACAAGTATTTCCGGAC 57.928 33.333 1.83 0.00 37.32 4.79
3161 4252 6.411630 TTTGATAACAAGTATTTCCGGACG 57.588 37.500 1.83 0.00 37.32 4.79
3162 4253 4.435425 TGATAACAAGTATTTCCGGACGG 58.565 43.478 1.83 3.96 0.00 4.79
3163 4254 4.160065 TGATAACAAGTATTTCCGGACGGA 59.840 41.667 1.83 9.76 43.52 4.69
3164 4255 2.667473 ACAAGTATTTCCGGACGGAG 57.333 50.000 13.64 3.15 46.06 4.63
3165 4256 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3166 4257 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3167 4258 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3190 4281 2.438254 TTCTTGATGGCGCGGCAT 60.438 55.556 43.29 43.29 0.00 4.40
3194 4288 1.066215 TCTTGATGGCGCGGCATATAT 60.066 47.619 42.69 26.45 0.00 0.86
3224 4318 7.254852 ACACGGCCTTTATTGTTATATTGTTG 58.745 34.615 0.00 0.00 0.00 3.33
3255 4349 1.583556 TGCACCTGGTGGATCTGTAT 58.416 50.000 27.02 0.00 37.04 2.29
3336 4430 3.269578 CATGACCAGCAACCATGGA 57.730 52.632 21.47 0.00 40.51 3.41
3345 4439 1.203100 AGCAACCATGGAAGCCTCTTT 60.203 47.619 21.47 2.46 0.00 2.52
3357 4451 3.000684 AGCCTCTTTAATTTCGACCCC 57.999 47.619 0.00 0.00 0.00 4.95
3390 4484 3.130693 ACTGGGACGATTACTTCTACAGC 59.869 47.826 0.00 0.00 0.00 4.40
3415 4509 2.076803 ATCCCCGGGGTCCTAAAGC 61.077 63.158 38.73 0.00 36.47 3.51
3448 4542 4.704540 ACTGAAATATCCATGCACCGAAAA 59.295 37.500 0.00 0.00 0.00 2.29
3451 4545 6.638610 TGAAATATCCATGCACCGAAAATTT 58.361 32.000 0.00 0.00 0.00 1.82
3543 4638 7.414098 CCGTTAAATAATCTGTGTGAAAGAGGG 60.414 40.741 0.00 0.00 0.00 4.30
3566 4661 3.876274 ATGTGTCTGTCGCTTGATAGT 57.124 42.857 0.00 0.00 33.02 2.12
3615 4711 6.500684 TTGAAGAACAAGGAATGCTACATC 57.499 37.500 0.00 0.00 34.20 3.06
3636 4732 2.060326 TGTAGTTTCGTTCTGGCTCG 57.940 50.000 0.00 0.00 0.00 5.03
3639 4737 1.204312 GTTTCGTTCTGGCTCGTGC 59.796 57.895 0.00 0.00 38.76 5.34
3925 5026 4.653801 ACCAGGTCACTATGCATACACATA 59.346 41.667 1.16 0.00 0.00 2.29
3936 5037 5.228579 TGCATACACATATCACCAAAACG 57.771 39.130 0.00 0.00 0.00 3.60
3940 5041 6.403200 GCATACACATATCACCAAAACGTTCT 60.403 38.462 0.00 0.00 0.00 3.01
4066 5167 9.778741 AAGTTTAGTTCTCATGTTATCAAGTCA 57.221 29.630 0.00 0.00 0.00 3.41
4098 5199 0.970640 ACAATTCCAGCAGCAATGCA 59.029 45.000 8.35 0.00 37.25 3.96
4105 5206 4.540735 GCAGCAATGCATGGGGCC 62.541 66.667 8.35 0.00 43.89 5.80
4157 5258 0.109913 GAACTCCTTCCGGTTTGGGT 59.890 55.000 0.00 0.00 38.76 4.51
4168 5269 2.203422 TTTGGGTGTTCGGCTGGG 60.203 61.111 0.00 0.00 0.00 4.45
4169 5270 4.966787 TTGGGTGTTCGGCTGGGC 62.967 66.667 0.00 0.00 0.00 5.36
4185 5286 3.435186 GCTGGCAAGCCTTCCGTC 61.435 66.667 12.96 0.00 44.22 4.79
4187 5288 2.032528 TGGCAAGCCTTCCGTCAG 59.967 61.111 12.96 0.00 36.94 3.51
4188 5289 2.032681 GGCAAGCCTTCCGTCAGT 59.967 61.111 3.29 0.00 0.00 3.41
4228 5372 2.647297 GCACTCAGGTTTGCTGCC 59.353 61.111 0.00 0.00 35.74 4.85
4229 5373 2.195567 GCACTCAGGTTTGCTGCCA 61.196 57.895 0.00 0.00 35.74 4.92
4246 5390 4.036852 GCTGCCAATACTCCAGTTAATTCC 59.963 45.833 0.00 0.00 0.00 3.01
4259 5403 7.309920 TCCAGTTAATTCCGTAAATTTTGCTC 58.690 34.615 0.00 0.00 38.53 4.26
4390 5544 9.807649 AAATATCAATCTGTTTCAGTAAATGCC 57.192 29.630 0.00 0.00 32.61 4.40
4424 5578 8.812329 TCAAAGTTGACACGAATTTTAATTTGG 58.188 29.630 7.23 0.54 31.98 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.480760 AAATAGTGTGGCCTTGAAAATATGT 57.519 32.000 3.32 0.00 0.00 2.29
1 2 7.818930 ACAAAATAGTGTGGCCTTGAAAATATG 59.181 33.333 3.32 0.00 0.00 1.78
3 4 7.014711 TGACAAAATAGTGTGGCCTTGAAAATA 59.985 33.333 3.32 0.00 0.00 1.40
5 6 5.127845 TGACAAAATAGTGTGGCCTTGAAAA 59.872 36.000 3.32 0.00 0.00 2.29
6 7 4.646945 TGACAAAATAGTGTGGCCTTGAAA 59.353 37.500 3.32 0.00 0.00 2.69
8 9 3.826524 TGACAAAATAGTGTGGCCTTGA 58.173 40.909 3.32 0.00 0.00 3.02
10 11 4.399303 GCTATGACAAAATAGTGTGGCCTT 59.601 41.667 3.32 0.00 33.42 4.35
12 13 3.242739 CGCTATGACAAAATAGTGTGGCC 60.243 47.826 0.00 0.00 36.38 5.36
13 14 3.788797 GCGCTATGACAAAATAGTGTGGC 60.789 47.826 0.00 0.00 40.98 5.01
14 15 3.373748 TGCGCTATGACAAAATAGTGTGG 59.626 43.478 9.73 0.00 40.98 4.17
15 16 4.093408 AGTGCGCTATGACAAAATAGTGTG 59.907 41.667 9.73 0.00 40.98 3.82
16 17 4.253685 AGTGCGCTATGACAAAATAGTGT 58.746 39.130 9.73 0.00 40.98 3.55
17 18 4.864916 AGTGCGCTATGACAAAATAGTG 57.135 40.909 9.73 1.33 41.55 2.74
18 19 7.553881 AAATAGTGCGCTATGACAAAATAGT 57.446 32.000 20.13 0.00 37.92 2.12
19 20 8.841444 AAAAATAGTGCGCTATGACAAAATAG 57.159 30.769 20.13 0.00 37.92 1.73
41 42 8.114331 AGAGTAGCATCACAATCAATGAAAAA 57.886 30.769 0.00 0.00 0.00 1.94
42 43 7.692460 AGAGTAGCATCACAATCAATGAAAA 57.308 32.000 0.00 0.00 0.00 2.29
43 44 7.280876 GGTAGAGTAGCATCACAATCAATGAAA 59.719 37.037 0.00 0.00 0.00 2.69
44 45 6.763135 GGTAGAGTAGCATCACAATCAATGAA 59.237 38.462 0.00 0.00 0.00 2.57
45 46 6.283694 GGTAGAGTAGCATCACAATCAATGA 58.716 40.000 0.00 0.00 0.00 2.57
46 47 5.176406 CGGTAGAGTAGCATCACAATCAATG 59.824 44.000 0.00 0.00 0.00 2.82
47 48 5.163405 ACGGTAGAGTAGCATCACAATCAAT 60.163 40.000 0.00 0.00 0.00 2.57
48 49 4.159693 ACGGTAGAGTAGCATCACAATCAA 59.840 41.667 0.00 0.00 0.00 2.57
49 50 3.699538 ACGGTAGAGTAGCATCACAATCA 59.300 43.478 0.00 0.00 0.00 2.57
50 51 4.308899 ACGGTAGAGTAGCATCACAATC 57.691 45.455 0.00 0.00 0.00 2.67
51 52 4.888239 AGTACGGTAGAGTAGCATCACAAT 59.112 41.667 0.00 0.00 0.00 2.71
52 53 4.267536 AGTACGGTAGAGTAGCATCACAA 58.732 43.478 0.00 0.00 0.00 3.33
53 54 3.875727 GAGTACGGTAGAGTAGCATCACA 59.124 47.826 0.00 0.00 0.00 3.58
54 55 3.250521 GGAGTACGGTAGAGTAGCATCAC 59.749 52.174 0.00 0.00 0.00 3.06
55 56 3.118149 TGGAGTACGGTAGAGTAGCATCA 60.118 47.826 0.00 0.00 0.00 3.07
56 57 3.250521 GTGGAGTACGGTAGAGTAGCATC 59.749 52.174 0.00 0.00 0.00 3.91
57 58 3.212685 GTGGAGTACGGTAGAGTAGCAT 58.787 50.000 0.00 0.00 0.00 3.79
58 59 2.636830 GTGGAGTACGGTAGAGTAGCA 58.363 52.381 0.00 0.00 0.00 3.49
59 60 1.946081 GGTGGAGTACGGTAGAGTAGC 59.054 57.143 0.00 0.00 0.00 3.58
60 61 2.159043 TCGGTGGAGTACGGTAGAGTAG 60.159 54.545 0.00 0.00 0.00 2.57
61 62 1.831106 TCGGTGGAGTACGGTAGAGTA 59.169 52.381 0.00 0.00 0.00 2.59
62 63 0.615331 TCGGTGGAGTACGGTAGAGT 59.385 55.000 0.00 0.00 0.00 3.24
63 64 1.964552 ATCGGTGGAGTACGGTAGAG 58.035 55.000 0.00 0.00 0.00 2.43
64 65 2.425143 AATCGGTGGAGTACGGTAGA 57.575 50.000 0.00 0.00 0.00 2.59
65 66 4.843220 ATTAATCGGTGGAGTACGGTAG 57.157 45.455 0.00 0.00 0.00 3.18
66 67 4.402155 ACAATTAATCGGTGGAGTACGGTA 59.598 41.667 0.00 0.00 0.00 4.02
67 68 3.196254 ACAATTAATCGGTGGAGTACGGT 59.804 43.478 0.00 0.00 0.00 4.83
68 69 3.788937 ACAATTAATCGGTGGAGTACGG 58.211 45.455 0.00 0.00 0.00 4.02
69 70 6.267817 TCTTACAATTAATCGGTGGAGTACG 58.732 40.000 3.64 0.00 0.00 3.67
70 71 7.263496 ACTCTTACAATTAATCGGTGGAGTAC 58.737 38.462 18.04 0.00 31.91 2.73
71 72 7.414222 ACTCTTACAATTAATCGGTGGAGTA 57.586 36.000 18.04 0.00 31.91 2.59
72 73 6.295719 ACTCTTACAATTAATCGGTGGAGT 57.704 37.500 16.00 16.00 0.00 3.85
73 74 6.700520 GGTACTCTTACAATTAATCGGTGGAG 59.299 42.308 15.26 15.26 0.00 3.86
74 75 6.407299 GGGTACTCTTACAATTAATCGGTGGA 60.407 42.308 0.00 2.22 0.00 4.02
75 76 5.756833 GGGTACTCTTACAATTAATCGGTGG 59.243 44.000 0.00 0.00 0.00 4.61
76 77 6.579865 AGGGTACTCTTACAATTAATCGGTG 58.420 40.000 0.00 0.00 0.00 4.94
77 78 6.803366 AGGGTACTCTTACAATTAATCGGT 57.197 37.500 0.00 0.00 0.00 4.69
139 140 9.515020 CCATGTACAATTGAACCAATGTAATAC 57.485 33.333 13.59 0.17 34.04 1.89
140 141 8.690884 CCCATGTACAATTGAACCAATGTAATA 58.309 33.333 13.59 0.00 34.04 0.98
141 142 7.555087 CCCATGTACAATTGAACCAATGTAAT 58.445 34.615 13.59 0.00 34.04 1.89
142 143 6.573289 GCCCATGTACAATTGAACCAATGTAA 60.573 38.462 13.59 0.00 34.04 2.41
143 144 5.105554 GCCCATGTACAATTGAACCAATGTA 60.106 40.000 13.59 0.00 34.04 2.29
144 145 4.322650 GCCCATGTACAATTGAACCAATGT 60.323 41.667 13.59 0.00 34.04 2.71
145 146 4.183101 GCCCATGTACAATTGAACCAATG 58.817 43.478 13.59 8.13 34.04 2.82
146 147 3.197549 GGCCCATGTACAATTGAACCAAT 59.802 43.478 13.59 0.00 35.39 3.16
147 148 2.564947 GGCCCATGTACAATTGAACCAA 59.435 45.455 13.59 0.00 0.00 3.67
148 149 2.175202 GGCCCATGTACAATTGAACCA 58.825 47.619 13.59 5.72 0.00 3.67
149 150 2.456577 AGGCCCATGTACAATTGAACC 58.543 47.619 13.59 0.00 0.00 3.62
150 151 3.763897 AGAAGGCCCATGTACAATTGAAC 59.236 43.478 13.59 0.00 0.00 3.18
151 152 4.046286 AGAAGGCCCATGTACAATTGAA 57.954 40.909 13.59 0.00 0.00 2.69
152 153 3.737559 AGAAGGCCCATGTACAATTGA 57.262 42.857 13.59 0.00 0.00 2.57
153 154 5.394115 GGTTTAGAAGGCCCATGTACAATTG 60.394 44.000 3.24 3.24 0.00 2.32
154 155 4.709886 GGTTTAGAAGGCCCATGTACAATT 59.290 41.667 0.00 0.00 0.00 2.32
155 156 4.278310 GGTTTAGAAGGCCCATGTACAAT 58.722 43.478 0.00 0.00 0.00 2.71
156 157 3.692690 GGTTTAGAAGGCCCATGTACAA 58.307 45.455 0.00 0.00 0.00 2.41
157 158 2.355310 CGGTTTAGAAGGCCCATGTACA 60.355 50.000 0.00 0.00 0.00 2.90
158 159 2.093341 TCGGTTTAGAAGGCCCATGTAC 60.093 50.000 0.00 0.00 0.00 2.90
159 160 2.189676 TCGGTTTAGAAGGCCCATGTA 58.810 47.619 0.00 0.00 0.00 2.29
160 161 0.988832 TCGGTTTAGAAGGCCCATGT 59.011 50.000 0.00 0.00 0.00 3.21
161 162 2.122783 TTCGGTTTAGAAGGCCCATG 57.877 50.000 0.00 0.00 0.00 3.66
162 163 2.891191 TTTCGGTTTAGAAGGCCCAT 57.109 45.000 0.00 0.00 0.00 4.00
163 164 2.510613 CTTTTCGGTTTAGAAGGCCCA 58.489 47.619 0.00 0.00 0.00 5.36
164 165 1.816835 CCTTTTCGGTTTAGAAGGCCC 59.183 52.381 0.00 0.00 32.99 5.80
165 166 2.786777 TCCTTTTCGGTTTAGAAGGCC 58.213 47.619 0.00 0.00 38.78 5.19
166 167 3.190744 CCTTCCTTTTCGGTTTAGAAGGC 59.809 47.826 10.20 0.00 42.69 4.35
168 169 6.819397 ATTCCTTCCTTTTCGGTTTAGAAG 57.181 37.500 0.00 0.00 0.00 2.85
169 170 8.736244 CAATATTCCTTCCTTTTCGGTTTAGAA 58.264 33.333 0.00 0.00 0.00 2.10
170 171 8.104566 TCAATATTCCTTCCTTTTCGGTTTAGA 58.895 33.333 0.00 0.00 0.00 2.10
171 172 8.276252 TCAATATTCCTTCCTTTTCGGTTTAG 57.724 34.615 0.00 0.00 0.00 1.85
172 173 8.517056 GTTCAATATTCCTTCCTTTTCGGTTTA 58.483 33.333 0.00 0.00 0.00 2.01
173 174 7.232737 AGTTCAATATTCCTTCCTTTTCGGTTT 59.767 33.333 0.00 0.00 0.00 3.27
174 175 6.719829 AGTTCAATATTCCTTCCTTTTCGGTT 59.280 34.615 0.00 0.00 0.00 4.44
175 176 6.246163 AGTTCAATATTCCTTCCTTTTCGGT 58.754 36.000 0.00 0.00 0.00 4.69
176 177 6.759497 AGTTCAATATTCCTTCCTTTTCGG 57.241 37.500 0.00 0.00 0.00 4.30
177 178 8.045176 AGAAGTTCAATATTCCTTCCTTTTCG 57.955 34.615 5.50 0.00 35.10 3.46
178 179 9.237187 AGAGAAGTTCAATATTCCTTCCTTTTC 57.763 33.333 5.50 6.65 35.10 2.29
180 181 9.898152 CTAGAGAAGTTCAATATTCCTTCCTTT 57.102 33.333 5.50 5.10 35.10 3.11
181 182 9.052365 ACTAGAGAAGTTCAATATTCCTTCCTT 57.948 33.333 5.50 6.71 33.35 3.36
182 183 8.616799 ACTAGAGAAGTTCAATATTCCTTCCT 57.383 34.615 5.50 11.54 33.35 3.36
202 203 8.583296 GTCCTAACTCTGGTTTAGAAAACTAGA 58.417 37.037 15.09 15.09 36.53 2.43
203 204 8.365647 TGTCCTAACTCTGGTTTAGAAAACTAG 58.634 37.037 8.99 8.99 36.92 2.57
204 205 8.253867 TGTCCTAACTCTGGTTTAGAAAACTA 57.746 34.615 2.84 0.00 36.92 2.24
205 206 7.133133 TGTCCTAACTCTGGTTTAGAAAACT 57.867 36.000 2.84 0.00 36.92 2.66
206 207 7.119407 GGATGTCCTAACTCTGGTTTAGAAAAC 59.881 40.741 0.00 0.00 36.92 2.43
207 208 7.017254 AGGATGTCCTAACTCTGGTTTAGAAAA 59.983 37.037 0.00 0.00 46.48 2.29
208 209 6.500751 AGGATGTCCTAACTCTGGTTTAGAAA 59.499 38.462 0.00 0.00 46.48 2.52
209 210 6.023603 AGGATGTCCTAACTCTGGTTTAGAA 58.976 40.000 0.00 0.00 46.48 2.10
210 211 5.590818 AGGATGTCCTAACTCTGGTTTAGA 58.409 41.667 0.00 0.00 46.48 2.10
211 212 5.941555 AGGATGTCCTAACTCTGGTTTAG 57.058 43.478 0.00 0.00 46.48 1.85
217 218 5.049928 CGGGTGAGGATGTCCTAACTCTG 62.050 56.522 13.45 7.03 44.57 3.35
218 219 2.950874 CGGGTGAGGATGTCCTAACTCT 60.951 54.545 13.45 0.00 44.57 3.24
225 226 0.608035 TTTTGCGGGTGAGGATGTCC 60.608 55.000 0.00 0.00 0.00 4.02
226 227 1.243902 TTTTTGCGGGTGAGGATGTC 58.756 50.000 0.00 0.00 0.00 3.06
227 228 3.430473 TTTTTGCGGGTGAGGATGT 57.570 47.368 0.00 0.00 0.00 3.06
262 263 6.017192 ACTTAGGAATGAGTTGTCAGTAGGA 58.983 40.000 0.00 0.00 35.66 2.94
263 264 6.102663 CACTTAGGAATGAGTTGTCAGTAGG 58.897 44.000 0.00 0.00 35.66 3.18
264 265 6.587990 CACACTTAGGAATGAGTTGTCAGTAG 59.412 42.308 0.00 0.00 35.66 2.57
265 266 6.041637 ACACACTTAGGAATGAGTTGTCAGTA 59.958 38.462 0.00 0.00 35.66 2.74
266 267 5.163301 ACACACTTAGGAATGAGTTGTCAGT 60.163 40.000 0.00 0.00 35.66 3.41
267 268 5.300752 ACACACTTAGGAATGAGTTGTCAG 58.699 41.667 0.00 0.00 35.66 3.51
268 269 5.290493 ACACACTTAGGAATGAGTTGTCA 57.710 39.130 0.00 0.00 37.02 3.58
317 319 4.527427 GGAGGTAGTAATAGCTAAGGTGGG 59.473 50.000 1.29 0.00 0.00 4.61
322 324 5.181622 CAGGACGGAGGTAGTAATAGCTAAG 59.818 48.000 1.29 2.41 0.00 2.18
324 326 4.506271 CCAGGACGGAGGTAGTAATAGCTA 60.506 50.000 1.29 0.00 36.56 3.32
331 333 2.610438 AAACCAGGACGGAGGTAGTA 57.390 50.000 0.00 0.00 37.07 1.82
332 334 2.174360 GTAAACCAGGACGGAGGTAGT 58.826 52.381 0.00 0.00 37.07 2.73
333 335 2.454538 AGTAAACCAGGACGGAGGTAG 58.545 52.381 0.00 0.00 37.07 3.18
334 336 2.610438 AGTAAACCAGGACGGAGGTA 57.390 50.000 0.00 0.00 37.07 3.08
335 337 2.454538 CTAGTAAACCAGGACGGAGGT 58.545 52.381 0.00 0.00 40.61 3.85
336 338 1.136500 GCTAGTAAACCAGGACGGAGG 59.864 57.143 0.00 0.00 38.63 4.30
337 339 1.136500 GGCTAGTAAACCAGGACGGAG 59.864 57.143 0.00 0.00 38.63 4.63
338 340 1.188863 GGCTAGTAAACCAGGACGGA 58.811 55.000 0.00 0.00 38.63 4.69
339 341 0.177373 GGGCTAGTAAACCAGGACGG 59.823 60.000 0.00 0.00 42.50 4.79
340 342 1.136500 GAGGGCTAGTAAACCAGGACG 59.864 57.143 0.00 0.00 0.00 4.79
341 343 2.468915 AGAGGGCTAGTAAACCAGGAC 58.531 52.381 0.00 0.00 0.00 3.85
342 344 2.942604 AGAGGGCTAGTAAACCAGGA 57.057 50.000 0.00 0.00 0.00 3.86
343 345 3.108376 AGAAGAGGGCTAGTAAACCAGG 58.892 50.000 0.00 0.00 0.00 4.45
344 346 4.828072 AAGAAGAGGGCTAGTAAACCAG 57.172 45.455 0.00 0.00 0.00 4.00
345 347 6.672657 AGAATAAGAAGAGGGCTAGTAAACCA 59.327 38.462 0.00 0.00 0.00 3.67
346 348 6.987404 CAGAATAAGAAGAGGGCTAGTAAACC 59.013 42.308 0.00 0.00 0.00 3.27
347 349 6.987404 CCAGAATAAGAAGAGGGCTAGTAAAC 59.013 42.308 0.00 0.00 0.00 2.01
348 350 6.672657 ACCAGAATAAGAAGAGGGCTAGTAAA 59.327 38.462 0.00 0.00 0.00 2.01
349 351 6.203072 ACCAGAATAAGAAGAGGGCTAGTAA 58.797 40.000 0.00 0.00 0.00 2.24
350 352 5.778542 ACCAGAATAAGAAGAGGGCTAGTA 58.221 41.667 0.00 0.00 0.00 1.82
351 353 4.625963 ACCAGAATAAGAAGAGGGCTAGT 58.374 43.478 0.00 0.00 0.00 2.57
352 354 5.622346 AACCAGAATAAGAAGAGGGCTAG 57.378 43.478 0.00 0.00 0.00 3.42
353 355 7.691993 ATAAACCAGAATAAGAAGAGGGCTA 57.308 36.000 0.00 0.00 0.00 3.93
354 356 4.936685 AAACCAGAATAAGAAGAGGGCT 57.063 40.909 0.00 0.00 0.00 5.19
355 357 8.926092 AATATAAACCAGAATAAGAAGAGGGC 57.074 34.615 0.00 0.00 0.00 5.19
365 367 9.420118 AGCATGGTCAAAATATAAACCAGAATA 57.580 29.630 0.00 0.00 44.52 1.75
366 368 8.310122 AGCATGGTCAAAATATAAACCAGAAT 57.690 30.769 0.00 0.00 44.52 2.40
367 369 7.716799 AGCATGGTCAAAATATAAACCAGAA 57.283 32.000 0.00 0.00 44.52 3.02
368 370 7.716799 AAGCATGGTCAAAATATAAACCAGA 57.283 32.000 0.00 0.00 44.52 3.86
369 371 8.776376 AAAAGCATGGTCAAAATATAAACCAG 57.224 30.769 0.00 0.00 44.52 4.00
461 463 9.188588 GCATGTCATCAAAGATTATATTGTTGG 57.811 33.333 0.00 0.00 30.73 3.77
462 464 9.738832 TGCATGTCATCAAAGATTATATTGTTG 57.261 29.630 0.00 0.00 0.00 3.33
471 473 9.661563 AAATGTTAATGCATGTCATCAAAGATT 57.338 25.926 0.00 5.12 33.40 2.40
472 474 9.661563 AAAATGTTAATGCATGTCATCAAAGAT 57.338 25.926 0.00 0.00 33.40 2.40
473 475 8.927721 CAAAATGTTAATGCATGTCATCAAAGA 58.072 29.630 0.00 0.00 33.40 2.52
474 476 7.690637 GCAAAATGTTAATGCATGTCATCAAAG 59.309 33.333 0.00 0.00 39.81 2.77
475 477 7.388224 AGCAAAATGTTAATGCATGTCATCAAA 59.612 29.630 0.00 0.00 42.45 2.69
476 478 6.874664 AGCAAAATGTTAATGCATGTCATCAA 59.125 30.769 0.00 0.00 42.45 2.57
477 479 6.399743 AGCAAAATGTTAATGCATGTCATCA 58.600 32.000 0.00 0.00 42.45 3.07
478 480 6.897259 AGCAAAATGTTAATGCATGTCATC 57.103 33.333 0.00 0.00 42.45 2.92
479 481 7.549839 ACTAGCAAAATGTTAATGCATGTCAT 58.450 30.769 0.00 2.79 42.45 3.06
480 482 6.923012 ACTAGCAAAATGTTAATGCATGTCA 58.077 32.000 0.00 0.14 42.45 3.58
481 483 7.816945 AACTAGCAAAATGTTAATGCATGTC 57.183 32.000 0.00 0.00 42.45 3.06
482 484 9.703892 TTTAACTAGCAAAATGTTAATGCATGT 57.296 25.926 0.00 0.00 42.45 3.21
491 493 9.855021 GACCACATATTTAACTAGCAAAATGTT 57.145 29.630 11.35 0.00 0.00 2.71
492 494 9.019656 TGACCACATATTTAACTAGCAAAATGT 57.980 29.630 11.35 10.40 0.00 2.71
493 495 9.853555 TTGACCACATATTTAACTAGCAAAATG 57.146 29.630 11.35 9.97 0.00 2.32
519 521 9.990868 AGTCCCCATAGTATTTTGAGTTAAATT 57.009 29.630 0.00 0.00 0.00 1.82
522 524 9.275572 ACTAGTCCCCATAGTATTTTGAGTTAA 57.724 33.333 0.00 0.00 31.71 2.01
523 525 8.849543 ACTAGTCCCCATAGTATTTTGAGTTA 57.150 34.615 0.00 0.00 31.71 2.24
524 526 7.750947 ACTAGTCCCCATAGTATTTTGAGTT 57.249 36.000 0.00 0.00 31.71 3.01
525 527 8.849543 TTACTAGTCCCCATAGTATTTTGAGT 57.150 34.615 0.00 0.00 36.03 3.41
526 528 9.543783 GTTTACTAGTCCCCATAGTATTTTGAG 57.456 37.037 0.00 0.00 36.03 3.02
527 529 9.275572 AGTTTACTAGTCCCCATAGTATTTTGA 57.724 33.333 0.00 0.00 36.03 2.69
530 532 9.377238 CCTAGTTTACTAGTCCCCATAGTATTT 57.623 37.037 14.13 0.00 43.34 1.40
531 533 8.740512 TCCTAGTTTACTAGTCCCCATAGTATT 58.259 37.037 14.13 0.00 43.34 1.89
532 534 8.169393 GTCCTAGTTTACTAGTCCCCATAGTAT 58.831 40.741 14.13 0.00 43.34 2.12
533 535 7.129349 TGTCCTAGTTTACTAGTCCCCATAGTA 59.871 40.741 14.13 0.00 43.34 1.82
534 536 6.068616 TGTCCTAGTTTACTAGTCCCCATAGT 60.069 42.308 14.13 0.00 43.34 2.12
535 537 6.371278 TGTCCTAGTTTACTAGTCCCCATAG 58.629 44.000 14.13 0.00 43.34 2.23
536 538 6.160992 TCTGTCCTAGTTTACTAGTCCCCATA 59.839 42.308 14.13 0.00 43.34 2.74
537 539 5.043582 TCTGTCCTAGTTTACTAGTCCCCAT 60.044 44.000 14.13 0.00 43.34 4.00
538 540 4.293102 TCTGTCCTAGTTTACTAGTCCCCA 59.707 45.833 14.13 5.85 43.34 4.96
539 541 4.864726 TCTGTCCTAGTTTACTAGTCCCC 58.135 47.826 14.13 0.00 43.34 4.81
540 542 5.753716 TCTCTGTCCTAGTTTACTAGTCCC 58.246 45.833 14.13 4.28 43.34 4.46
541 543 8.212995 ACTATCTCTGTCCTAGTTTACTAGTCC 58.787 40.741 14.13 6.26 43.34 3.85
551 553 8.865090 CCATCAAATTACTATCTCTGTCCTAGT 58.135 37.037 0.00 0.00 0.00 2.57
552 554 7.816995 GCCATCAAATTACTATCTCTGTCCTAG 59.183 40.741 0.00 0.00 0.00 3.02
553 555 7.510685 AGCCATCAAATTACTATCTCTGTCCTA 59.489 37.037 0.00 0.00 0.00 2.94
554 556 6.328672 AGCCATCAAATTACTATCTCTGTCCT 59.671 38.462 0.00 0.00 0.00 3.85
555 557 6.529220 AGCCATCAAATTACTATCTCTGTCC 58.471 40.000 0.00 0.00 0.00 4.02
556 558 7.330700 GCTAGCCATCAAATTACTATCTCTGTC 59.669 40.741 2.29 0.00 0.00 3.51
557 559 7.158021 GCTAGCCATCAAATTACTATCTCTGT 58.842 38.462 2.29 0.00 0.00 3.41
558 560 7.157347 TGCTAGCCATCAAATTACTATCTCTG 58.843 38.462 13.29 0.00 0.00 3.35
559 561 7.308450 TGCTAGCCATCAAATTACTATCTCT 57.692 36.000 13.29 0.00 0.00 3.10
560 562 7.969536 TTGCTAGCCATCAAATTACTATCTC 57.030 36.000 13.29 0.00 0.00 2.75
561 563 7.041780 CGTTTGCTAGCCATCAAATTACTATCT 60.042 37.037 13.29 0.00 35.06 1.98
562 564 7.072030 CGTTTGCTAGCCATCAAATTACTATC 58.928 38.462 13.29 0.00 35.06 2.08
563 565 6.542370 ACGTTTGCTAGCCATCAAATTACTAT 59.458 34.615 13.29 0.00 35.06 2.12
564 566 5.878116 ACGTTTGCTAGCCATCAAATTACTA 59.122 36.000 13.29 0.00 35.06 1.82
565 567 4.700213 ACGTTTGCTAGCCATCAAATTACT 59.300 37.500 13.29 0.00 35.06 2.24
566 568 4.981794 ACGTTTGCTAGCCATCAAATTAC 58.018 39.130 13.29 0.00 35.06 1.89
585 587 2.863132 TTATTGGGGTTGCAGTACGT 57.137 45.000 0.00 0.00 0.00 3.57
607 609 7.658167 GGAGTACTCTAGATTTTCAAATAGGGC 59.342 40.741 21.88 0.00 0.00 5.19
612 614 7.760340 GTGTCGGAGTACTCTAGATTTTCAAAT 59.240 37.037 21.88 0.00 0.00 2.32
632 634 4.418013 TGCAGTCAAAATATTGTGTCGG 57.582 40.909 5.52 2.52 37.79 4.79
634 636 6.380995 TCACATGCAGTCAAAATATTGTGTC 58.619 36.000 5.52 0.27 37.79 3.67
637 639 7.037438 GGAATCACATGCAGTCAAAATATTGT 58.963 34.615 0.00 0.00 37.79 2.71
639 641 7.341256 AGAGGAATCACATGCAGTCAAAATATT 59.659 33.333 0.00 0.00 0.00 1.28
640 642 6.832384 AGAGGAATCACATGCAGTCAAAATAT 59.168 34.615 0.00 0.00 0.00 1.28
666 668 5.869344 CCGAAACAAAGACTCAGTGATCATA 59.131 40.000 0.00 0.00 0.00 2.15
677 679 2.943033 CTGTCCAACCGAAACAAAGACT 59.057 45.455 0.00 0.00 0.00 3.24
681 683 0.378962 CGCTGTCCAACCGAAACAAA 59.621 50.000 0.00 0.00 0.00 2.83
688 690 0.732571 ATTTATGCGCTGTCCAACCG 59.267 50.000 9.73 0.00 0.00 4.44
736 740 3.171528 GTGTTGTAGGTAGAAGAGGGGT 58.828 50.000 0.00 0.00 0.00 4.95
744 748 3.256631 GGGTCTTTCGTGTTGTAGGTAGA 59.743 47.826 0.00 0.00 0.00 2.59
826 847 3.945285 TCAAGGTGTTTTGTCTTGGAGTC 59.055 43.478 0.00 0.00 38.59 3.36
829 850 3.636300 CCATCAAGGTGTTTTGTCTTGGA 59.364 43.478 0.00 0.00 38.59 3.53
830 853 3.799917 GCCATCAAGGTGTTTTGTCTTGG 60.800 47.826 0.00 0.00 40.61 3.61
875 898 0.035915 GGTGAGTGGAAAGAGGCTCC 60.036 60.000 11.71 0.00 0.00 4.70
878 901 1.623811 TGTAGGTGAGTGGAAAGAGGC 59.376 52.381 0.00 0.00 0.00 4.70
912 935 4.624913 AGAGAGAGAGAGAGAGAGGAAGA 58.375 47.826 0.00 0.00 0.00 2.87
913 936 4.202305 GGAGAGAGAGAGAGAGAGAGGAAG 60.202 54.167 0.00 0.00 0.00 3.46
914 937 3.711704 GGAGAGAGAGAGAGAGAGAGGAA 59.288 52.174 0.00 0.00 0.00 3.36
915 938 3.309296 GGAGAGAGAGAGAGAGAGAGGA 58.691 54.545 0.00 0.00 0.00 3.71
916 939 2.370189 GGGAGAGAGAGAGAGAGAGAGG 59.630 59.091 0.00 0.00 0.00 3.69
917 940 3.070734 CAGGGAGAGAGAGAGAGAGAGAG 59.929 56.522 0.00 0.00 0.00 3.20
918 941 3.041211 CAGGGAGAGAGAGAGAGAGAGA 58.959 54.545 0.00 0.00 0.00 3.10
919 942 2.486191 GCAGGGAGAGAGAGAGAGAGAG 60.486 59.091 0.00 0.00 0.00 3.20
920 943 1.490490 GCAGGGAGAGAGAGAGAGAGA 59.510 57.143 0.00 0.00 0.00 3.10
921 944 1.492176 AGCAGGGAGAGAGAGAGAGAG 59.508 57.143 0.00 0.00 0.00 3.20
922 945 1.490490 GAGCAGGGAGAGAGAGAGAGA 59.510 57.143 0.00 0.00 0.00 3.10
923 946 1.492176 AGAGCAGGGAGAGAGAGAGAG 59.508 57.143 0.00 0.00 0.00 3.20
924 947 1.490490 GAGAGCAGGGAGAGAGAGAGA 59.510 57.143 0.00 0.00 0.00 3.10
925 948 1.477558 GGAGAGCAGGGAGAGAGAGAG 60.478 61.905 0.00 0.00 0.00 3.20
926 949 0.550914 GGAGAGCAGGGAGAGAGAGA 59.449 60.000 0.00 0.00 0.00 3.10
927 950 0.468029 GGGAGAGCAGGGAGAGAGAG 60.468 65.000 0.00 0.00 0.00 3.20
928 951 0.923729 AGGGAGAGCAGGGAGAGAGA 60.924 60.000 0.00 0.00 0.00 3.10
929 952 0.756442 CAGGGAGAGCAGGGAGAGAG 60.756 65.000 0.00 0.00 0.00 3.20
930 953 1.309347 CAGGGAGAGCAGGGAGAGA 59.691 63.158 0.00 0.00 0.00 3.10
931 954 2.433994 GCAGGGAGAGCAGGGAGAG 61.434 68.421 0.00 0.00 0.00 3.20
932 955 2.364842 GCAGGGAGAGCAGGGAGA 60.365 66.667 0.00 0.00 0.00 3.71
933 956 2.365370 AGCAGGGAGAGCAGGGAG 60.365 66.667 0.00 0.00 0.00 4.30
934 957 2.364842 GAGCAGGGAGAGCAGGGA 60.365 66.667 0.00 0.00 0.00 4.20
935 958 2.365370 AGAGCAGGGAGAGCAGGG 60.365 66.667 0.00 0.00 0.00 4.45
936 959 1.381599 AGAGAGCAGGGAGAGCAGG 60.382 63.158 0.00 0.00 0.00 4.85
937 960 0.396139 AGAGAGAGCAGGGAGAGCAG 60.396 60.000 0.00 0.00 0.00 4.24
938 961 0.395586 GAGAGAGAGCAGGGAGAGCA 60.396 60.000 0.00 0.00 0.00 4.26
939 962 0.106519 AGAGAGAGAGCAGGGAGAGC 60.107 60.000 0.00 0.00 0.00 4.09
940 963 1.492176 AGAGAGAGAGAGCAGGGAGAG 59.508 57.143 0.00 0.00 0.00 3.20
941 964 1.490490 GAGAGAGAGAGAGCAGGGAGA 59.510 57.143 0.00 0.00 0.00 3.71
942 965 1.492176 AGAGAGAGAGAGAGCAGGGAG 59.508 57.143 0.00 0.00 0.00 4.30
943 966 1.490490 GAGAGAGAGAGAGAGCAGGGA 59.510 57.143 0.00 0.00 0.00 4.20
944 967 1.492176 AGAGAGAGAGAGAGAGCAGGG 59.508 57.143 0.00 0.00 0.00 4.45
945 968 2.437281 AGAGAGAGAGAGAGAGAGCAGG 59.563 54.545 0.00 0.00 0.00 4.85
946 969 3.387374 AGAGAGAGAGAGAGAGAGAGCAG 59.613 52.174 0.00 0.00 0.00 4.24
947 970 3.378512 AGAGAGAGAGAGAGAGAGAGCA 58.621 50.000 0.00 0.00 0.00 4.26
948 971 3.640967 AGAGAGAGAGAGAGAGAGAGAGC 59.359 52.174 0.00 0.00 0.00 4.09
1173 1510 5.211454 CAACACATATCAACTTGACGCAAA 58.789 37.500 0.00 0.00 0.00 3.68
1174 1511 4.274705 ACAACACATATCAACTTGACGCAA 59.725 37.500 0.00 0.00 0.00 4.85
1175 1512 3.812609 ACAACACATATCAACTTGACGCA 59.187 39.130 0.00 0.00 0.00 5.24
1186 1523 5.808042 AACAGATGAGCACAACACATATC 57.192 39.130 0.00 0.00 28.79 1.63
1234 1624 4.993029 ATCTTCTCCACTAGTACTGCAC 57.007 45.455 5.39 0.00 0.00 4.57
1277 1667 3.070302 GCACCGGGAGATAGATCTTCTTT 59.930 47.826 6.32 0.00 37.25 2.52
1326 1716 0.684805 ACCTCAGTCTCCACCCGATC 60.685 60.000 0.00 0.00 0.00 3.69
1439 1835 2.042979 ACCACCTGGGCACATAGAAAAT 59.957 45.455 0.00 0.00 42.05 1.82
1504 1930 6.957920 TTCACAGATGAAAGATTGAAACCA 57.042 33.333 0.00 0.00 41.99 3.67
1524 1950 2.091541 GCCAATGGGACGATCTTTTCA 58.908 47.619 0.00 0.00 35.59 2.69
1569 1995 4.400109 GTCTCGCTGTCGACGCCA 62.400 66.667 20.97 11.60 40.21 5.69
1744 2172 0.385974 GCACGCACACAATTCCACTC 60.386 55.000 0.00 0.00 0.00 3.51
1746 2174 0.661187 CTGCACGCACACAATTCCAC 60.661 55.000 0.00 0.00 0.00 4.02
1747 2175 1.653667 CTGCACGCACACAATTCCA 59.346 52.632 0.00 0.00 0.00 3.53
1749 2177 0.871722 TACCTGCACGCACACAATTC 59.128 50.000 0.00 0.00 0.00 2.17
1750 2178 1.199789 CATACCTGCACGCACACAATT 59.800 47.619 0.00 0.00 0.00 2.32
1751 2179 0.804364 CATACCTGCACGCACACAAT 59.196 50.000 0.00 0.00 0.00 2.71
1896 2902 4.458397 AGCATCCAAGTTCATAGTCCATG 58.542 43.478 0.00 0.00 35.81 3.66
1897 2903 4.785346 AGCATCCAAGTTCATAGTCCAT 57.215 40.909 0.00 0.00 0.00 3.41
1898 2904 4.225942 AGAAGCATCCAAGTTCATAGTCCA 59.774 41.667 0.00 0.00 0.00 4.02
1899 2905 4.574013 CAGAAGCATCCAAGTTCATAGTCC 59.426 45.833 0.00 0.00 0.00 3.85
1902 2911 3.881688 CCCAGAAGCATCCAAGTTCATAG 59.118 47.826 0.00 0.00 0.00 2.23
1920 2929 6.348498 AGAACTTCATTTTTGTTTTCCCCAG 58.652 36.000 0.00 0.00 0.00 4.45
1921 2930 6.306643 AGAACTTCATTTTTGTTTTCCCCA 57.693 33.333 0.00 0.00 0.00 4.96
1923 2932 6.821160 TCCAAGAACTTCATTTTTGTTTTCCC 59.179 34.615 0.00 0.00 31.82 3.97
1924 2933 7.841915 TCCAAGAACTTCATTTTTGTTTTCC 57.158 32.000 0.00 0.00 31.82 3.13
1925 2934 8.882736 ACATCCAAGAACTTCATTTTTGTTTTC 58.117 29.630 0.00 0.00 31.82 2.29
1993 3003 5.565592 TGCACCAACTCATGTATGAATTC 57.434 39.130 0.00 0.00 36.18 2.17
2024 3034 2.032528 CCTTGCTTCTCACCCGCA 59.967 61.111 0.00 0.00 0.00 5.69
2045 3055 2.084610 TGAATGGTCTCTCTTGCACG 57.915 50.000 0.00 0.00 0.00 5.34
2175 3185 0.783206 TTCATGGCCTTCCTTTGGGA 59.217 50.000 3.32 0.00 40.36 4.37
2178 3188 1.821136 GTCCTTCATGGCCTTCCTTTG 59.179 52.381 3.32 0.00 35.26 2.77
2286 3296 2.705658 TGACAACAGGGAGATCACACTT 59.294 45.455 0.00 0.00 0.00 3.16
2295 3305 0.458543 CGGACGATGACAACAGGGAG 60.459 60.000 0.00 0.00 0.00 4.30
2379 3389 7.012799 CAGGGAAAGGAAAGAGAAGCATATAAC 59.987 40.741 0.00 0.00 0.00 1.89
2387 3423 2.040947 AGGCAGGGAAAGGAAAGAGAAG 59.959 50.000 0.00 0.00 0.00 2.85
2392 3428 3.721087 TTAGAGGCAGGGAAAGGAAAG 57.279 47.619 0.00 0.00 0.00 2.62
2393 3429 4.675063 ATTTAGAGGCAGGGAAAGGAAA 57.325 40.909 0.00 0.00 0.00 3.13
2394 3430 4.675063 AATTTAGAGGCAGGGAAAGGAA 57.325 40.909 0.00 0.00 0.00 3.36
2402 3438 5.643379 TGCACTTTAAATTTAGAGGCAGG 57.357 39.130 19.07 9.48 0.00 4.85
2551 3596 0.035056 CCATGGTGAGGTTGAGGTCC 60.035 60.000 2.57 0.00 0.00 4.46
2609 3654 5.046878 CCATTGCATGCCTGGAATATATGTT 60.047 40.000 24.96 0.00 40.98 2.71
2610 3655 4.464951 CCATTGCATGCCTGGAATATATGT 59.535 41.667 24.96 0.00 40.98 2.29
2623 3668 1.270199 TGACAACCAACCATTGCATGC 60.270 47.619 11.82 11.82 0.00 4.06
2624 3669 2.036217 ACTGACAACCAACCATTGCATG 59.964 45.455 0.00 0.00 0.00 4.06
2671 3758 1.083489 TCACCGCCATCGTTGAAATC 58.917 50.000 0.00 0.00 34.19 2.17
2682 3769 1.673993 ACGATTGCATTCACCGCCA 60.674 52.632 9.14 0.00 0.00 5.69
2685 3772 0.179192 CCACACGATTGCATTCACCG 60.179 55.000 9.14 1.54 0.00 4.94
2701 3788 2.425668 GCACCAACATATACCCAACCAC 59.574 50.000 0.00 0.00 0.00 4.16
2800 3887 1.448540 GTGGCTCGGGATGTGACTG 60.449 63.158 0.00 0.00 0.00 3.51
2868 3955 0.443869 CCTCGTGCAGCACATTGTAC 59.556 55.000 25.19 0.00 33.40 2.90
3043 4130 0.398318 AAGAGGCCACAACAGAGGAC 59.602 55.000 5.01 0.00 0.00 3.85
3130 4221 9.382275 GGAAATACTTGTTATCAAAAATGCCAT 57.618 29.630 0.00 0.00 32.87 4.40
3132 4223 7.010091 CCGGAAATACTTGTTATCAAAAATGCC 59.990 37.037 0.00 0.00 32.87 4.40
3133 4224 7.757624 TCCGGAAATACTTGTTATCAAAAATGC 59.242 33.333 0.00 0.00 32.87 3.56
3134 4225 9.072294 GTCCGGAAATACTTGTTATCAAAAATG 57.928 33.333 5.23 0.00 32.87 2.32
3135 4226 7.966204 CGTCCGGAAATACTTGTTATCAAAAAT 59.034 33.333 5.23 0.00 32.87 1.82
3136 4227 7.299586 CGTCCGGAAATACTTGTTATCAAAAA 58.700 34.615 5.23 0.00 32.87 1.94
3137 4228 6.128227 CCGTCCGGAAATACTTGTTATCAAAA 60.128 38.462 5.23 0.00 37.50 2.44
3138 4229 5.352016 CCGTCCGGAAATACTTGTTATCAAA 59.648 40.000 5.23 0.00 37.50 2.69
3139 4230 4.871557 CCGTCCGGAAATACTTGTTATCAA 59.128 41.667 5.23 0.00 37.50 2.57
3140 4231 4.160065 TCCGTCCGGAAATACTTGTTATCA 59.840 41.667 5.23 0.00 42.05 2.15
3141 4232 4.685924 TCCGTCCGGAAATACTTGTTATC 58.314 43.478 5.23 0.00 42.05 1.75
3142 4233 4.442472 CCTCCGTCCGGAAATACTTGTTAT 60.442 45.833 5.23 0.00 44.66 1.89
3143 4234 3.119029 CCTCCGTCCGGAAATACTTGTTA 60.119 47.826 5.23 0.00 44.66 2.41
3144 4235 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
3145 4236 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3146 4237 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3147 4238 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3148 4239 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3149 4240 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3150 4241 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3151 4242 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3152 4243 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
3153 4244 0.466922 GATACTCCCTCCGTCCGGAA 60.467 60.000 5.23 0.00 44.66 4.30
3154 4245 1.150081 GATACTCCCTCCGTCCGGA 59.850 63.158 0.00 0.00 42.90 5.14
3155 4246 0.467659 AAGATACTCCCTCCGTCCGG 60.468 60.000 0.00 0.00 0.00 5.14
3156 4247 0.953003 GAAGATACTCCCTCCGTCCG 59.047 60.000 0.00 0.00 0.00 4.79
3157 4248 2.362717 CAAGAAGATACTCCCTCCGTCC 59.637 54.545 0.00 0.00 0.00 4.79
3158 4249 3.288964 TCAAGAAGATACTCCCTCCGTC 58.711 50.000 0.00 0.00 0.00 4.79
3159 4250 3.383698 TCAAGAAGATACTCCCTCCGT 57.616 47.619 0.00 0.00 0.00 4.69
3160 4251 3.006323 CCATCAAGAAGATACTCCCTCCG 59.994 52.174 0.00 0.00 34.43 4.63
3161 4252 3.244387 GCCATCAAGAAGATACTCCCTCC 60.244 52.174 0.00 0.00 34.43 4.30
3162 4253 3.553922 CGCCATCAAGAAGATACTCCCTC 60.554 52.174 0.00 0.00 34.43 4.30
3163 4254 2.366916 CGCCATCAAGAAGATACTCCCT 59.633 50.000 0.00 0.00 34.43 4.20
3164 4255 2.760374 CGCCATCAAGAAGATACTCCC 58.240 52.381 0.00 0.00 34.43 4.30
3165 4256 2.139118 GCGCCATCAAGAAGATACTCC 58.861 52.381 0.00 0.00 34.43 3.85
3166 4257 1.789464 CGCGCCATCAAGAAGATACTC 59.211 52.381 0.00 0.00 34.43 2.59
3167 4258 1.539065 CCGCGCCATCAAGAAGATACT 60.539 52.381 0.00 0.00 34.43 2.12
3190 4281 6.530120 ACAATAAAGGCCGTGTCATCATATA 58.470 36.000 0.00 0.00 0.00 0.86
3194 4288 3.066291 ACAATAAAGGCCGTGTCATCA 57.934 42.857 0.00 0.00 0.00 3.07
3224 4318 1.359848 CAGGTGCATCACGAACCTAC 58.640 55.000 0.00 0.00 42.51 3.18
3279 4373 0.716108 GGTTGACGTCATCGAAGCAG 59.284 55.000 20.80 0.00 40.62 4.24
3315 4409 1.077086 ATGGTTGCTGGTCATGGCA 59.923 52.632 0.00 0.00 36.62 4.92
3336 4430 3.245122 TGGGGTCGAAATTAAAGAGGCTT 60.245 43.478 0.00 0.00 0.00 4.35
3345 4439 4.013728 CAATGGTCTTGGGGTCGAAATTA 58.986 43.478 0.00 0.00 0.00 1.40
3378 4472 3.119245 GGATGTGGACGCTGTAGAAGTAA 60.119 47.826 0.00 0.00 0.00 2.24
3415 4509 5.823209 TGGATATTTCAGTTGAGCATGTG 57.177 39.130 0.00 0.00 0.00 3.21
3426 4520 4.898829 TTTCGGTGCATGGATATTTCAG 57.101 40.909 0.00 0.00 0.00 3.02
3531 4626 4.023707 CAGACACATTTCCCTCTTTCACAC 60.024 45.833 0.00 0.00 0.00 3.82
3533 4628 4.137543 ACAGACACATTTCCCTCTTTCAC 58.862 43.478 0.00 0.00 0.00 3.18
3543 4638 4.627467 ACTATCAAGCGACAGACACATTTC 59.373 41.667 0.00 0.00 0.00 2.17
3566 4661 1.836802 TATGCAAGTTGATGCCTGCA 58.163 45.000 7.16 0.00 45.83 4.41
3615 4711 2.345641 CGAGCCAGAACGAAACTACATG 59.654 50.000 0.00 0.00 0.00 3.21
3623 4719 1.664649 CAGCACGAGCCAGAACGAA 60.665 57.895 0.00 0.00 43.56 3.85
3636 4732 5.505173 AGTCATAATTGGCAATACAGCAC 57.495 39.130 14.05 7.08 35.83 4.40
3752 4853 5.886960 ATTCACAAATCTTGGAGCACTAC 57.113 39.130 0.00 0.00 34.12 2.73
3925 5026 3.190535 GCATGGTAGAACGTTTTGGTGAT 59.809 43.478 0.46 0.00 0.00 3.06
3936 5037 4.160252 ACATTTTCCCATGCATGGTAGAAC 59.840 41.667 37.30 0.00 46.65 3.01
3940 5041 5.495926 AAAACATTTTCCCATGCATGGTA 57.504 34.783 37.30 24.94 46.65 3.25
4063 5164 9.597999 GCTGGAATTGTTTGATAAAATTTTGAC 57.402 29.630 13.76 7.76 0.00 3.18
4065 5166 9.601971 CTGCTGGAATTGTTTGATAAAATTTTG 57.398 29.630 13.76 0.00 0.00 2.44
4066 5167 8.291740 GCTGCTGGAATTGTTTGATAAAATTTT 58.708 29.630 8.75 8.75 0.00 1.82
4098 5199 6.735556 CAATATAAAATAGAGGAGGCCCCAT 58.264 40.000 12.24 0.00 37.41 4.00
4168 5269 3.435186 GACGGAAGGCTTGCCAGC 61.435 66.667 13.42 0.00 46.52 4.85
4169 5270 2.032528 TGACGGAAGGCTTGCCAG 59.967 61.111 13.42 2.62 42.42 4.85
4170 5271 2.032528 CTGACGGAAGGCTTGCCA 59.967 61.111 13.42 5.41 42.42 4.92
4171 5272 2.032681 ACTGACGGAAGGCTTGCC 59.967 61.111 13.42 9.12 42.42 4.52
4172 5273 2.035442 GGACTGACGGAAGGCTTGC 61.035 63.158 3.46 6.57 42.42 4.01
4183 5284 1.269831 CGCTATTGGGCTAGGACTGAC 60.270 57.143 0.00 0.00 0.00 3.51
4184 5285 1.040646 CGCTATTGGGCTAGGACTGA 58.959 55.000 0.00 0.00 0.00 3.41
4185 5286 1.000283 CTCGCTATTGGGCTAGGACTG 60.000 57.143 0.00 0.00 0.00 3.51
4187 5288 1.041437 ACTCGCTATTGGGCTAGGAC 58.959 55.000 0.00 0.00 30.65 3.85
4188 5289 1.687123 GAACTCGCTATTGGGCTAGGA 59.313 52.381 0.00 0.00 30.65 2.94
4227 5371 7.852971 TTTACGGAATTAACTGGAGTATTGG 57.147 36.000 0.00 0.00 0.00 3.16
4390 5544 6.442487 TTCGTGTCAACTTTGATTAGTACG 57.558 37.500 0.00 0.00 39.73 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.