Multiple sequence alignment - TraesCS5A01G531200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G531200 chr5A 100.000 6075 0 0 1 6075 689603449 689609523 0.000000e+00 11219.0
1 TraesCS5A01G531200 chr5A 77.551 196 29 9 4418 4600 689866948 689866755 3.000000e-18 104.0
2 TraesCS5A01G531200 chr4D 89.808 2502 140 37 766 3197 505325707 505328163 0.000000e+00 3101.0
3 TraesCS5A01G531200 chr4D 92.308 962 48 13 3979 4933 505328835 505329777 0.000000e+00 1343.0
4 TraesCS5A01G531200 chr4D 92.190 781 45 4 5295 6075 505330256 505331020 0.000000e+00 1090.0
5 TraesCS5A01G531200 chr4D 91.850 638 44 5 3315 3945 505328192 505328828 0.000000e+00 883.0
6 TraesCS5A01G531200 chr4D 89.674 368 23 10 4931 5288 505329850 505330212 7.180000e-124 455.0
7 TraesCS5A01G531200 chr4B 91.835 1433 60 13 1775 3197 651988082 651989467 0.000000e+00 1945.0
8 TraesCS5A01G531200 chr4B 94.880 918 44 3 4018 4933 651989927 651990843 0.000000e+00 1432.0
9 TraesCS5A01G531200 chr4B 82.841 1049 110 40 762 1777 651986907 651987918 0.000000e+00 876.0
10 TraesCS5A01G531200 chr4B 91.727 556 33 8 5527 6075 651991152 651991701 0.000000e+00 760.0
11 TraesCS5A01G531200 chr4B 94.749 438 18 3 3315 3752 651989496 651989928 0.000000e+00 676.0
12 TraesCS5A01G531200 chr4B 94.850 233 9 3 4921 5151 651990896 651991127 1.610000e-95 361.0
13 TraesCS5A01G531200 chr1D 94.517 693 30 7 1 688 46200677 46201366 0.000000e+00 1062.0
14 TraesCS5A01G531200 chr1D 93.848 699 29 8 1 692 58117330 58116639 0.000000e+00 1040.0
15 TraesCS5A01G531200 chr1D 77.197 421 87 9 2184 2600 297522545 297522960 2.830000e-58 237.0
16 TraesCS5A01G531200 chr7D 93.983 698 31 8 1 688 186632634 186631938 0.000000e+00 1046.0
17 TraesCS5A01G531200 chr3A 93.840 698 36 6 1 691 468426641 468425944 0.000000e+00 1044.0
18 TraesCS5A01G531200 chr6D 93.857 700 30 8 1 687 143498050 143498749 0.000000e+00 1042.0
19 TraesCS5A01G531200 chr5D 93.840 698 33 6 1 688 395019016 395019713 0.000000e+00 1042.0
20 TraesCS5A01G531200 chr5D 86.700 203 24 2 2184 2384 440914270 440914471 7.930000e-54 222.0
21 TraesCS5A01G531200 chr5D 84.118 170 23 3 5369 5535 484671189 484671357 1.750000e-35 161.0
22 TraesCS5A01G531200 chr2A 93.714 700 36 8 1 692 261150584 261151283 0.000000e+00 1042.0
23 TraesCS5A01G531200 chr2A 93.922 691 38 4 1 688 338603034 338602345 0.000000e+00 1040.0
24 TraesCS5A01G531200 chr2B 93.503 708 30 10 1 692 754933885 754934592 0.000000e+00 1038.0
25 TraesCS5A01G531200 chr6A 85.490 255 32 3 2193 2444 432570779 432571031 1.680000e-65 261.0
26 TraesCS5A01G531200 chr6A 84.375 96 15 0 5426 5521 587773110 587773205 1.800000e-15 95.3
27 TraesCS5A01G531200 chr1A 89.109 101 8 2 5423 5521 27127705 27127804 8.270000e-24 122.0
28 TraesCS5A01G531200 chr7B 89.474 57 4 2 5466 5521 158541493 158541438 3.040000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G531200 chr5A 689603449 689609523 6074 False 11219.000000 11219 100.000000 1 6075 1 chr5A.!!$F1 6074
1 TraesCS5A01G531200 chr4D 505325707 505331020 5313 False 1374.400000 3101 91.166000 766 6075 5 chr4D.!!$F1 5309
2 TraesCS5A01G531200 chr4B 651986907 651991701 4794 False 1008.333333 1945 91.813667 762 6075 6 chr4B.!!$F1 5313
3 TraesCS5A01G531200 chr1D 46200677 46201366 689 False 1062.000000 1062 94.517000 1 688 1 chr1D.!!$F1 687
4 TraesCS5A01G531200 chr1D 58116639 58117330 691 True 1040.000000 1040 93.848000 1 692 1 chr1D.!!$R1 691
5 TraesCS5A01G531200 chr7D 186631938 186632634 696 True 1046.000000 1046 93.983000 1 688 1 chr7D.!!$R1 687
6 TraesCS5A01G531200 chr3A 468425944 468426641 697 True 1044.000000 1044 93.840000 1 691 1 chr3A.!!$R1 690
7 TraesCS5A01G531200 chr6D 143498050 143498749 699 False 1042.000000 1042 93.857000 1 687 1 chr6D.!!$F1 686
8 TraesCS5A01G531200 chr5D 395019016 395019713 697 False 1042.000000 1042 93.840000 1 688 1 chr5D.!!$F1 687
9 TraesCS5A01G531200 chr2A 261150584 261151283 699 False 1042.000000 1042 93.714000 1 692 1 chr2A.!!$F1 691
10 TraesCS5A01G531200 chr2A 338602345 338603034 689 True 1040.000000 1040 93.922000 1 688 1 chr2A.!!$R1 687
11 TraesCS5A01G531200 chr2B 754933885 754934592 707 False 1038.000000 1038 93.503000 1 692 1 chr2B.!!$F1 691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
560 585 0.034198 GAGAAGGAGGATAAGCGGCC 59.966 60.0 0.00 0.00 0.00 6.13 F
1302 1362 0.030773 TCGCTCTAGGTAGCATTGCG 59.969 55.0 2.38 12.78 42.91 4.85 F
1955 2230 1.034838 GTACATGGCCAAATGCGGGA 61.035 55.0 10.96 0.00 42.61 5.14 F
3042 3340 0.469144 TTCTCCCCAGTGCCCAAAAC 60.469 55.0 0.00 0.00 0.00 2.43 F
4630 4942 0.842030 TGACAAGCCTCCAGATGGGT 60.842 55.0 0.00 0.00 38.11 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2050 2325 0.471211 TGTCTTCCAAGTCCTCCGGT 60.471 55.000 0.0 0.0 0.00 5.28 R
2507 2805 1.215423 AGAATAGCCCCGCTTCCAATT 59.785 47.619 0.0 0.0 40.44 2.32 R
3653 3951 0.533755 GATGCTCCCACAGGATTCGG 60.534 60.000 0.0 0.0 42.93 4.30 R
4837 5150 0.588252 CTTGTGCCGTGTTCAGGAAG 59.412 55.000 0.0 0.0 0.00 3.46 R
5822 6260 1.204312 GTTTCGTTCTGGCTCGTGC 59.796 57.895 0.0 0.0 38.76 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
207 208 7.502120 AATGTGTGGAGTCTAAATATGATGC 57.498 36.000 0.00 0.00 0.00 3.91
325 332 5.398603 TTGCAAATAAACACCCCACTATG 57.601 39.130 0.00 0.00 0.00 2.23
344 353 7.713507 CCACTATGACCATATACGGAAAGAAAA 59.286 37.037 0.00 0.00 0.00 2.29
453 471 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
455 473 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
459 477 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
463 481 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
464 482 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
465 483 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
466 484 4.892934 AGAGAGAGAGAGAGAGAGAGAGAC 59.107 50.000 0.00 0.00 0.00 3.36
560 585 0.034198 GAGAAGGAGGATAAGCGGCC 59.966 60.000 0.00 0.00 0.00 6.13
582 607 2.355756 ACACAAATATGATGCCTCGCAC 59.644 45.455 0.00 0.00 43.04 5.34
658 683 3.746492 GCGTGTGTTATGTTTTCTCTCCT 59.254 43.478 0.00 0.00 0.00 3.69
688 713 2.000447 CACGGGCTCTTTTGCTAGTAC 59.000 52.381 0.00 0.00 0.00 2.73
692 717 3.802685 CGGGCTCTTTTGCTAGTACATAC 59.197 47.826 0.00 0.00 0.00 2.39
693 718 4.441634 CGGGCTCTTTTGCTAGTACATACT 60.442 45.833 0.00 0.00 40.24 2.12
694 719 4.811557 GGGCTCTTTTGCTAGTACATACTG 59.188 45.833 1.66 0.00 37.10 2.74
695 720 5.395324 GGGCTCTTTTGCTAGTACATACTGA 60.395 44.000 1.66 0.00 37.10 3.41
696 721 6.284459 GGCTCTTTTGCTAGTACATACTGAT 58.716 40.000 1.66 0.00 37.10 2.90
697 722 6.763610 GGCTCTTTTGCTAGTACATACTGATT 59.236 38.462 1.66 0.00 37.10 2.57
698 723 7.281100 GGCTCTTTTGCTAGTACATACTGATTT 59.719 37.037 1.66 0.00 37.10 2.17
699 724 8.119226 GCTCTTTTGCTAGTACATACTGATTTG 58.881 37.037 1.66 0.00 37.10 2.32
700 725 9.155975 CTCTTTTGCTAGTACATACTGATTTGT 57.844 33.333 1.66 0.00 37.10 2.83
701 726 9.151471 TCTTTTGCTAGTACATACTGATTTGTC 57.849 33.333 1.66 0.00 37.10 3.18
702 727 9.155975 CTTTTGCTAGTACATACTGATTTGTCT 57.844 33.333 1.66 0.00 37.10 3.41
703 728 8.703604 TTTGCTAGTACATACTGATTTGTCTC 57.296 34.615 1.66 0.00 37.10 3.36
704 729 6.806751 TGCTAGTACATACTGATTTGTCTCC 58.193 40.000 1.66 0.00 37.10 3.71
705 730 6.183360 TGCTAGTACATACTGATTTGTCTCCC 60.183 42.308 1.66 0.00 37.10 4.30
706 731 6.041069 GCTAGTACATACTGATTTGTCTCCCT 59.959 42.308 1.66 0.00 37.10 4.20
707 732 6.227298 AGTACATACTGATTTGTCTCCCTG 57.773 41.667 0.00 0.00 34.72 4.45
708 733 5.958380 AGTACATACTGATTTGTCTCCCTGA 59.042 40.000 0.00 0.00 34.72 3.86
709 734 5.762179 ACATACTGATTTGTCTCCCTGAA 57.238 39.130 0.00 0.00 0.00 3.02
710 735 6.126863 ACATACTGATTTGTCTCCCTGAAA 57.873 37.500 0.00 0.00 0.00 2.69
711 736 6.725364 ACATACTGATTTGTCTCCCTGAAAT 58.275 36.000 0.00 0.00 0.00 2.17
712 737 7.177878 ACATACTGATTTGTCTCCCTGAAATT 58.822 34.615 0.00 0.00 0.00 1.82
713 738 7.671398 ACATACTGATTTGTCTCCCTGAAATTT 59.329 33.333 0.00 0.00 0.00 1.82
714 739 6.336842 ACTGATTTGTCTCCCTGAAATTTG 57.663 37.500 0.00 0.00 0.00 2.32
715 740 5.835280 ACTGATTTGTCTCCCTGAAATTTGT 59.165 36.000 0.00 0.00 0.00 2.83
716 741 7.004086 ACTGATTTGTCTCCCTGAAATTTGTA 58.996 34.615 0.00 0.00 0.00 2.41
717 742 7.671398 ACTGATTTGTCTCCCTGAAATTTGTAT 59.329 33.333 0.00 0.00 0.00 2.29
718 743 8.421249 TGATTTGTCTCCCTGAAATTTGTATT 57.579 30.769 0.00 0.00 0.00 1.89
719 744 8.869109 TGATTTGTCTCCCTGAAATTTGTATTT 58.131 29.630 0.00 0.00 36.68 1.40
720 745 9.710900 GATTTGTCTCCCTGAAATTTGTATTTT 57.289 29.630 0.00 0.00 34.16 1.82
737 762 4.167597 TTTTTGCGGGGTGTCTCC 57.832 55.556 0.00 0.00 0.00 3.71
755 780 9.574516 GGTGTCTCCCTGTATTTCATTATTATT 57.425 33.333 0.00 0.00 0.00 1.40
783 808 0.173935 TGCGTACGAACATGGTAGGG 59.826 55.000 21.65 0.00 0.00 3.53
786 811 1.532505 CGTACGAACATGGTAGGGACG 60.533 57.143 10.44 4.81 0.00 4.79
878 903 4.281102 ACACCAGGTGACCGTGTA 57.719 55.556 27.39 0.00 41.18 2.90
949 974 2.048503 GTAGTCAGCGTGGGCGTT 60.049 61.111 0.00 0.00 46.35 4.84
1240 1295 0.831966 AGCTGCTTCATCCCTCTCAG 59.168 55.000 0.00 0.00 0.00 3.35
1261 1316 0.685097 ATCGTAATGCGTGGGGCTAT 59.315 50.000 0.00 0.00 44.05 2.97
1264 1319 3.090790 TCGTAATGCGTGGGGCTATATA 58.909 45.455 0.00 0.00 44.05 0.86
1284 1339 3.863142 ATCAGCTGCTTGTTTTGGATC 57.137 42.857 9.47 0.00 0.00 3.36
1287 1342 0.242017 GCTGCTTGTTTTGGATCGCT 59.758 50.000 0.00 0.00 0.00 4.93
1302 1362 0.030773 TCGCTCTAGGTAGCATTGCG 59.969 55.000 2.38 12.78 42.91 4.85
1303 1363 0.030773 CGCTCTAGGTAGCATTGCGA 59.969 55.000 13.42 0.00 42.91 5.10
1305 1365 2.064762 GCTCTAGGTAGCATTGCGATG 58.935 52.381 9.80 9.80 42.30 3.84
1342 1408 2.437359 GCGAGCTTGACTGGCCAT 60.437 61.111 5.51 0.00 43.81 4.40
1399 1481 1.598132 CTGAATCTGGCAGAATGAGCG 59.402 52.381 22.84 4.50 39.69 5.03
1421 1516 3.556004 GGCCAACTAGGATAGCACTGATC 60.556 52.174 0.00 0.00 44.39 2.92
1436 1531 6.387465 AGCACTGATCATTTCTTGAACAATG 58.613 36.000 0.00 0.00 37.40 2.82
1472 1571 1.595311 ATGGTCCTGCTGGATAACCA 58.405 50.000 19.72 19.72 45.29 3.67
1514 1617 3.259123 TCATCTGCTGCTTGACTTACAGA 59.741 43.478 0.00 0.00 38.42 3.41
1553 1656 6.017357 GTCTTACTCAAAATGTCGTTTTCCCT 60.017 38.462 0.00 0.00 37.93 4.20
1559 1662 1.247567 ATGTCGTTTTCCCTGCTTGG 58.752 50.000 0.00 0.00 0.00 3.61
1569 1672 2.183679 TCCCTGCTTGGTTTTGTGTTT 58.816 42.857 0.00 0.00 0.00 2.83
1650 1759 2.740981 GCATCTCACAGACAGTCCTTTG 59.259 50.000 0.00 0.00 0.00 2.77
1824 2099 8.584157 ACTAGATTCATGAGTATTCATCTGTCC 58.416 37.037 13.31 0.00 42.12 4.02
1874 2149 5.589050 GGTATGATTCTTACCAGGGAAACAC 59.411 44.000 19.01 0.00 39.18 3.32
1875 2150 4.028993 TGATTCTTACCAGGGAAACACC 57.971 45.455 0.00 0.00 38.08 4.16
1912 2187 1.613925 GACTGGGAAAACCTTGGCTTC 59.386 52.381 0.00 0.00 41.11 3.86
1955 2230 1.034838 GTACATGGCCAAATGCGGGA 61.035 55.000 10.96 0.00 42.61 5.14
1985 2260 5.438761 AAACTTTTCCAGTGGAGAAATCG 57.561 39.130 15.49 7.45 35.12 3.34
2045 2320 7.466804 TGGAGTCTTAAATTATGGACAGGTTT 58.533 34.615 8.51 0.00 0.00 3.27
2118 2403 7.810766 GCAAGTAGCTATGATAATCTCTGAC 57.189 40.000 0.00 0.00 41.15 3.51
2166 2451 5.857822 AAAGGTATCAGACGTGCTTAAAC 57.142 39.130 0.00 0.00 0.00 2.01
2174 2459 9.601971 GTATCAGACGTGCTTAAACAATTTTTA 57.398 29.630 0.00 0.00 0.00 1.52
2177 2462 9.176181 TCAGACGTGCTTAAACAATTTTTATTC 57.824 29.630 0.00 0.00 0.00 1.75
2179 2464 9.744468 AGACGTGCTTAAACAATTTTTATTCTT 57.256 25.926 0.00 0.00 0.00 2.52
2199 2484 3.057969 TGCATGTAGGGACTGTTTGAG 57.942 47.619 0.00 0.00 41.52 3.02
2403 2688 5.035443 GTCTTCTCATGCTCATTTCATTGC 58.965 41.667 0.00 0.00 0.00 3.56
2404 2689 4.097437 TCTTCTCATGCTCATTTCATTGCC 59.903 41.667 0.00 0.00 0.00 4.52
2405 2690 2.691526 TCTCATGCTCATTTCATTGCCC 59.308 45.455 0.00 0.00 0.00 5.36
2406 2691 2.693591 CTCATGCTCATTTCATTGCCCT 59.306 45.455 0.00 0.00 0.00 5.19
2407 2692 2.691526 TCATGCTCATTTCATTGCCCTC 59.308 45.455 0.00 0.00 0.00 4.30
2408 2693 2.519771 TGCTCATTTCATTGCCCTCT 57.480 45.000 0.00 0.00 0.00 3.69
2409 2694 2.097036 TGCTCATTTCATTGCCCTCTG 58.903 47.619 0.00 0.00 0.00 3.35
2410 2695 2.097825 GCTCATTTCATTGCCCTCTGT 58.902 47.619 0.00 0.00 0.00 3.41
2411 2696 3.282021 GCTCATTTCATTGCCCTCTGTA 58.718 45.455 0.00 0.00 0.00 2.74
2412 2697 3.065925 GCTCATTTCATTGCCCTCTGTAC 59.934 47.826 0.00 0.00 0.00 2.90
2413 2698 4.264253 CTCATTTCATTGCCCTCTGTACA 58.736 43.478 0.00 0.00 0.00 2.90
2414 2699 4.858850 TCATTTCATTGCCCTCTGTACAT 58.141 39.130 0.00 0.00 0.00 2.29
2415 2700 5.263599 TCATTTCATTGCCCTCTGTACATT 58.736 37.500 0.00 0.00 0.00 2.71
2501 2799 2.368875 AGGTTCCTTGTATATCAGGCCG 59.631 50.000 0.00 0.00 0.00 6.13
2507 2805 3.762288 CCTTGTATATCAGGCCGCTACTA 59.238 47.826 0.00 0.00 0.00 1.82
2603 2901 8.984764 GTTGGAAATTATTTCAAGGTTTGTACC 58.015 33.333 17.92 0.00 41.95 3.34
2629 2927 7.908082 CGAGTTTTTCAGTTCAACAAACATCTA 59.092 33.333 4.54 0.00 40.56 1.98
2782 3080 9.944079 TTTTCCAAATTTATACCATCCTGGATA 57.056 29.630 9.27 0.00 40.96 2.59
2893 3191 1.594331 GAACTGGAGGCGTGAAAACT 58.406 50.000 0.00 0.00 0.00 2.66
2921 3219 5.876460 GGAAACTATGCCTCGGTAACTTTTA 59.124 40.000 0.00 0.00 0.00 1.52
2957 3255 6.693315 TTTTTCATTCTTTCGACCTCTGTT 57.307 33.333 0.00 0.00 0.00 3.16
2962 3260 1.347707 TCTTTCGACCTCTGTTGGCAT 59.652 47.619 0.00 0.00 0.00 4.40
3042 3340 0.469144 TTCTCCCCAGTGCCCAAAAC 60.469 55.000 0.00 0.00 0.00 2.43
3096 3394 9.229784 CTGCAAATGATGAAAATGTACATCTAC 57.770 33.333 9.23 4.21 42.05 2.59
3175 3473 1.347707 TGCTCTTAGTGGTTGACTGGG 59.652 52.381 0.00 0.00 35.96 4.45
3177 3475 2.237392 GCTCTTAGTGGTTGACTGGGAT 59.763 50.000 0.00 0.00 35.96 3.85
3204 3502 7.748691 TTTTCAGTACTAACATTTACACCCC 57.251 36.000 0.00 0.00 0.00 4.95
3205 3503 6.691255 TTCAGTACTAACATTTACACCCCT 57.309 37.500 0.00 0.00 0.00 4.79
3206 3504 6.691255 TCAGTACTAACATTTACACCCCTT 57.309 37.500 0.00 0.00 0.00 3.95
3207 3505 7.795534 TCAGTACTAACATTTACACCCCTTA 57.204 36.000 0.00 0.00 0.00 2.69
3209 3507 8.828751 TCAGTACTAACATTTACACCCCTTATT 58.171 33.333 0.00 0.00 0.00 1.40
3210 3508 9.457436 CAGTACTAACATTTACACCCCTTATTT 57.543 33.333 0.00 0.00 0.00 1.40
3223 3521 8.990163 ACACCCCTTATTTTATCATTTACGAT 57.010 30.769 0.00 0.00 0.00 3.73
3224 3522 9.416284 ACACCCCTTATTTTATCATTTACGATT 57.584 29.630 0.00 0.00 0.00 3.34
3225 3523 9.677567 CACCCCTTATTTTATCATTTACGATTG 57.322 33.333 0.00 0.00 0.00 2.67
3226 3524 8.357402 ACCCCTTATTTTATCATTTACGATTGC 58.643 33.333 0.00 0.00 0.00 3.56
3227 3525 8.576442 CCCCTTATTTTATCATTTACGATTGCT 58.424 33.333 0.00 0.00 0.00 3.91
3233 3531 8.500753 TTTTATCATTTACGATTGCTAGGTGT 57.499 30.769 0.00 0.00 0.00 4.16
3234 3532 8.500753 TTTATCATTTACGATTGCTAGGTGTT 57.499 30.769 0.00 0.00 0.00 3.32
3235 3533 5.794687 TCATTTACGATTGCTAGGTGTTG 57.205 39.130 0.00 0.00 0.00 3.33
3236 3534 4.634004 TCATTTACGATTGCTAGGTGTTGG 59.366 41.667 0.00 0.00 0.00 3.77
3237 3535 3.965379 TTACGATTGCTAGGTGTTGGA 57.035 42.857 0.00 0.00 0.00 3.53
3238 3536 4.481368 TTACGATTGCTAGGTGTTGGAT 57.519 40.909 0.00 0.00 0.00 3.41
3239 3537 5.601583 TTACGATTGCTAGGTGTTGGATA 57.398 39.130 0.00 0.00 0.00 2.59
3240 3538 4.689612 ACGATTGCTAGGTGTTGGATAT 57.310 40.909 0.00 0.00 0.00 1.63
3241 3539 5.036117 ACGATTGCTAGGTGTTGGATATT 57.964 39.130 0.00 0.00 0.00 1.28
3242 3540 5.437060 ACGATTGCTAGGTGTTGGATATTT 58.563 37.500 0.00 0.00 0.00 1.40
3243 3541 6.588204 ACGATTGCTAGGTGTTGGATATTTA 58.412 36.000 0.00 0.00 0.00 1.40
3244 3542 7.224297 ACGATTGCTAGGTGTTGGATATTTAT 58.776 34.615 0.00 0.00 0.00 1.40
3245 3543 8.372459 ACGATTGCTAGGTGTTGGATATTTATA 58.628 33.333 0.00 0.00 0.00 0.98
3246 3544 8.656849 CGATTGCTAGGTGTTGGATATTTATAC 58.343 37.037 0.00 0.00 0.00 1.47
3247 3545 9.502091 GATTGCTAGGTGTTGGATATTTATACA 57.498 33.333 0.00 0.00 0.00 2.29
3248 3546 8.902540 TTGCTAGGTGTTGGATATTTATACAG 57.097 34.615 0.00 0.00 0.00 2.74
3249 3547 8.257602 TGCTAGGTGTTGGATATTTATACAGA 57.742 34.615 0.00 0.00 0.00 3.41
3250 3548 8.148351 TGCTAGGTGTTGGATATTTATACAGAC 58.852 37.037 0.00 0.00 0.00 3.51
3251 3549 7.603024 GCTAGGTGTTGGATATTTATACAGACC 59.397 40.741 0.00 5.49 33.87 3.85
3252 3550 7.691993 AGGTGTTGGATATTTATACAGACCT 57.308 36.000 8.70 8.70 36.83 3.85
3253 3551 7.736893 AGGTGTTGGATATTTATACAGACCTC 58.263 38.462 8.70 0.00 36.92 3.85
3254 3552 7.569111 AGGTGTTGGATATTTATACAGACCTCT 59.431 37.037 8.70 0.00 36.92 3.69
3268 3566 3.686726 CAGACCTCTGTTTTCTATGGTGC 59.313 47.826 0.00 0.00 39.09 5.01
3269 3567 3.584848 AGACCTCTGTTTTCTATGGTGCT 59.415 43.478 0.00 0.00 0.00 4.40
3270 3568 4.777896 AGACCTCTGTTTTCTATGGTGCTA 59.222 41.667 0.00 0.00 0.00 3.49
3271 3569 5.248477 AGACCTCTGTTTTCTATGGTGCTAA 59.752 40.000 0.00 0.00 0.00 3.09
3272 3570 5.246307 ACCTCTGTTTTCTATGGTGCTAAC 58.754 41.667 0.00 0.00 0.00 2.34
3273 3571 5.013183 ACCTCTGTTTTCTATGGTGCTAACT 59.987 40.000 0.00 0.00 0.00 2.24
3274 3572 6.212791 ACCTCTGTTTTCTATGGTGCTAACTA 59.787 38.462 0.00 0.00 0.00 2.24
3275 3573 7.103641 CCTCTGTTTTCTATGGTGCTAACTAA 58.896 38.462 0.00 0.00 0.00 2.24
3276 3574 7.606456 CCTCTGTTTTCTATGGTGCTAACTAAA 59.394 37.037 0.00 0.00 0.00 1.85
3277 3575 9.167311 CTCTGTTTTCTATGGTGCTAACTAAAT 57.833 33.333 0.00 0.00 0.00 1.40
3278 3576 9.162764 TCTGTTTTCTATGGTGCTAACTAAATC 57.837 33.333 0.00 0.00 0.00 2.17
3279 3577 8.276252 TGTTTTCTATGGTGCTAACTAAATCC 57.724 34.615 0.00 0.00 0.00 3.01
3280 3578 8.107095 TGTTTTCTATGGTGCTAACTAAATCCT 58.893 33.333 0.00 0.00 0.00 3.24
3281 3579 8.613482 GTTTTCTATGGTGCTAACTAAATCCTC 58.387 37.037 0.00 0.00 0.00 3.71
3282 3580 6.085555 TCTATGGTGCTAACTAAATCCTCG 57.914 41.667 0.00 0.00 0.00 4.63
3283 3581 3.536956 TGGTGCTAACTAAATCCTCGG 57.463 47.619 0.00 0.00 0.00 4.63
3284 3582 2.210961 GGTGCTAACTAAATCCTCGGC 58.789 52.381 0.00 0.00 0.00 5.54
3285 3583 2.419574 GGTGCTAACTAAATCCTCGGCA 60.420 50.000 0.00 0.00 0.00 5.69
3286 3584 2.608090 GTGCTAACTAAATCCTCGGCAC 59.392 50.000 0.00 0.00 41.09 5.01
3287 3585 2.235155 TGCTAACTAAATCCTCGGCACA 59.765 45.455 0.00 0.00 0.00 4.57
3288 3586 3.118408 TGCTAACTAAATCCTCGGCACAT 60.118 43.478 0.00 0.00 0.00 3.21
3289 3587 3.495001 GCTAACTAAATCCTCGGCACATC 59.505 47.826 0.00 0.00 0.00 3.06
3290 3588 3.914426 AACTAAATCCTCGGCACATCT 57.086 42.857 0.00 0.00 0.00 2.90
3291 3589 3.914426 ACTAAATCCTCGGCACATCTT 57.086 42.857 0.00 0.00 0.00 2.40
3292 3590 4.222124 ACTAAATCCTCGGCACATCTTT 57.778 40.909 0.00 0.00 0.00 2.52
3293 3591 4.192317 ACTAAATCCTCGGCACATCTTTC 58.808 43.478 0.00 0.00 0.00 2.62
3294 3592 3.356529 AAATCCTCGGCACATCTTTCT 57.643 42.857 0.00 0.00 0.00 2.52
3295 3593 3.356529 AATCCTCGGCACATCTTTCTT 57.643 42.857 0.00 0.00 0.00 2.52
3296 3594 2.859165 TCCTCGGCACATCTTTCTTT 57.141 45.000 0.00 0.00 0.00 2.52
3297 3595 3.140325 TCCTCGGCACATCTTTCTTTT 57.860 42.857 0.00 0.00 0.00 2.27
3298 3596 3.074412 TCCTCGGCACATCTTTCTTTTC 58.926 45.455 0.00 0.00 0.00 2.29
3299 3597 3.077359 CCTCGGCACATCTTTCTTTTCT 58.923 45.455 0.00 0.00 0.00 2.52
3300 3598 3.126000 CCTCGGCACATCTTTCTTTTCTC 59.874 47.826 0.00 0.00 0.00 2.87
3301 3599 3.074412 TCGGCACATCTTTCTTTTCTCC 58.926 45.455 0.00 0.00 0.00 3.71
3302 3600 3.077359 CGGCACATCTTTCTTTTCTCCT 58.923 45.455 0.00 0.00 0.00 3.69
3303 3601 3.503748 CGGCACATCTTTCTTTTCTCCTT 59.496 43.478 0.00 0.00 0.00 3.36
3304 3602 4.378874 CGGCACATCTTTCTTTTCTCCTTC 60.379 45.833 0.00 0.00 0.00 3.46
3305 3603 4.764308 GGCACATCTTTCTTTTCTCCTTCT 59.236 41.667 0.00 0.00 0.00 2.85
3306 3604 5.106357 GGCACATCTTTCTTTTCTCCTTCTC 60.106 44.000 0.00 0.00 0.00 2.87
3307 3605 5.390356 GCACATCTTTCTTTTCTCCTTCTCG 60.390 44.000 0.00 0.00 0.00 4.04
3308 3606 5.698545 CACATCTTTCTTTTCTCCTTCTCGT 59.301 40.000 0.00 0.00 0.00 4.18
3309 3607 6.203723 CACATCTTTCTTTTCTCCTTCTCGTT 59.796 38.462 0.00 0.00 0.00 3.85
3310 3608 7.385205 CACATCTTTCTTTTCTCCTTCTCGTTA 59.615 37.037 0.00 0.00 0.00 3.18
3311 3609 8.097662 ACATCTTTCTTTTCTCCTTCTCGTTAT 58.902 33.333 0.00 0.00 0.00 1.89
3312 3610 9.587772 CATCTTTCTTTTCTCCTTCTCGTTATA 57.412 33.333 0.00 0.00 0.00 0.98
3338 3636 8.546597 AATTGTTGTAAAAGGATATTGTTGGC 57.453 30.769 0.00 0.00 0.00 4.52
3360 3658 8.876275 TGGCAAATCTATATTGAAATTGAAGC 57.124 30.769 15.28 5.12 0.00 3.86
3373 3671 3.520290 ATTGAAGCCGTCGATTCTGTA 57.480 42.857 10.29 0.05 0.00 2.74
3378 3676 3.520290 AGCCGTCGATTCTGTAATGAA 57.480 42.857 0.00 0.00 0.00 2.57
3394 3692 5.938710 TGTAATGAATTGTTAACTACGCCCA 59.061 36.000 7.22 0.00 0.00 5.36
3411 3709 4.142138 ACGCCCACATTGTTTTGACTTTTA 60.142 37.500 0.00 0.00 0.00 1.52
3584 3882 9.123709 GCAATATTTTCGTTGTGAAAGTATGAA 57.876 29.630 6.27 0.00 44.22 2.57
3633 3931 9.453572 TTCTTAAATCTGTTTCAGTATCTGCAT 57.546 29.630 0.00 0.00 32.61 3.96
3653 3951 7.155858 TGCATTTAAAAGTAGTTTTTGCGAC 57.844 32.000 18.95 7.95 38.74 5.19
3740 4041 9.579768 GTCTAATGTGGATGATAAGCTACTATG 57.420 37.037 0.00 0.00 0.00 2.23
3744 4045 9.664332 AATGTGGATGATAAGCTACTATGAATC 57.336 33.333 0.00 0.00 0.00 2.52
3749 4050 9.717942 GGATGATAAGCTACTATGAATCTTTGT 57.282 33.333 0.00 0.00 0.00 2.83
3759 4060 7.617041 ACTATGAATCTTTGTTTCAGTAGCC 57.383 36.000 0.00 0.00 36.60 3.93
3774 4075 8.736244 GTTTCAGTAGCCAAATTACAGGATTTA 58.264 33.333 0.00 0.00 0.00 1.40
3804 4107 6.538021 CCTCATGTGACCTATCTTTTTCTGAG 59.462 42.308 0.00 0.00 0.00 3.35
3805 4108 7.244886 TCATGTGACCTATCTTTTTCTGAGA 57.755 36.000 0.00 0.00 0.00 3.27
3808 4111 8.610896 CATGTGACCTATCTTTTTCTGAGATTC 58.389 37.037 0.00 0.00 35.56 2.52
3827 4130 6.023603 AGATTCCAAGTAACTAGGGAAGTGA 58.976 40.000 7.63 0.00 42.25 3.41
3890 4194 9.921637 TGTCAGAAAAAGATGTAAAAACAGTTT 57.078 25.926 0.00 0.00 0.00 2.66
3905 4209 8.528044 AAAAACAGTTTGGTCCATCTAGTTTA 57.472 30.769 0.00 0.00 0.00 2.01
3906 4210 8.706322 AAAACAGTTTGGTCCATCTAGTTTAT 57.294 30.769 0.00 3.38 0.00 1.40
3922 4226 8.830915 TCTAGTTTATCTCTCATCTTCCTTGT 57.169 34.615 0.00 0.00 0.00 3.16
3937 4241 7.252612 TCTTCCTTGTATAGAACATTGGTCA 57.747 36.000 4.20 0.00 38.10 4.02
3949 4253 9.941325 ATAGAACATTGGTCATTATTTTTGCAA 57.059 25.926 4.20 0.00 0.00 4.08
3951 4255 7.388500 AGAACATTGGTCATTATTTTTGCAAGG 59.612 33.333 4.20 0.00 0.00 3.61
3952 4256 6.767456 ACATTGGTCATTATTTTTGCAAGGA 58.233 32.000 0.00 0.00 0.00 3.36
3953 4257 6.875195 ACATTGGTCATTATTTTTGCAAGGAG 59.125 34.615 0.00 0.00 0.00 3.69
3954 4258 6.418057 TTGGTCATTATTTTTGCAAGGAGT 57.582 33.333 0.00 0.00 0.00 3.85
3955 4259 7.531857 TTGGTCATTATTTTTGCAAGGAGTA 57.468 32.000 0.00 0.00 0.00 2.59
3956 4260 7.531857 TGGTCATTATTTTTGCAAGGAGTAA 57.468 32.000 0.00 1.11 0.00 2.24
3957 4261 8.133024 TGGTCATTATTTTTGCAAGGAGTAAT 57.867 30.769 0.00 3.41 0.00 1.89
3958 4262 8.592809 TGGTCATTATTTTTGCAAGGAGTAATT 58.407 29.630 0.00 0.00 0.00 1.40
4271 4583 7.539436 TGATCGGAAGTACTATATGATGCTTC 58.461 38.462 0.00 9.16 33.63 3.86
4339 4651 2.418746 GGAACGCCATGTGTCTGTAGAT 60.419 50.000 0.00 0.00 0.00 1.98
4448 4760 4.709840 GCTTCTGCTCTGCCTTGA 57.290 55.556 0.00 0.00 36.03 3.02
4464 4776 7.725251 TCTGCCTTGAAACTGTCAATTTTTAT 58.275 30.769 0.00 0.00 45.27 1.40
4465 4777 7.652909 TCTGCCTTGAAACTGTCAATTTTTATG 59.347 33.333 0.00 0.00 45.27 1.90
4491 4803 5.276631 CGTTTAATTTGGCTGTTCAAACACC 60.277 40.000 0.00 0.41 39.13 4.16
4630 4942 0.842030 TGACAAGCCTCCAGATGGGT 60.842 55.000 0.00 0.00 38.11 4.51
4658 4970 2.366837 ATCGGATGGGCTGGACCA 60.367 61.111 0.00 0.00 46.24 4.02
4766 5078 2.525310 TGGGACCTAGGGGAAGCTAATA 59.475 50.000 14.81 0.00 36.25 0.98
4769 5081 4.168883 GGACCTAGGGGAAGCTAATATGT 58.831 47.826 14.81 0.00 36.25 2.29
4802 5115 5.880332 TGTTTACCATCAACTAGGATCTTGC 59.120 40.000 0.00 0.00 0.00 4.01
4855 5168 0.107410 ACTTCCTGAACACGGCACAA 60.107 50.000 0.00 0.00 0.00 3.33
4926 5239 5.111989 ACTCCAAATGTATCGAGTGATGTG 58.888 41.667 0.00 0.00 34.35 3.21
4929 5242 5.812127 TCCAAATGTATCGAGTGATGTGAAG 59.188 40.000 0.00 0.00 35.99 3.02
5037 5425 5.591643 TTCTTGACGTGAAATTGTCTAGC 57.408 39.130 0.00 0.00 37.70 3.42
5071 5459 6.442487 TTCGTGTCAACTTTGATTAGTACG 57.558 37.500 0.00 0.00 39.73 3.67
5234 5631 7.852971 TTTACGGAATTAACTGGAGTATTGG 57.147 36.000 0.00 0.00 0.00 3.16
5273 5670 1.687123 GAACTCGCTATTGGGCTAGGA 59.313 52.381 0.00 0.00 30.65 2.94
5282 5679 0.543410 TTGGGCTAGGACTGACGGAA 60.543 55.000 0.00 0.00 0.00 4.30
5285 5682 1.142097 GCTAGGACTGACGGAAGGC 59.858 63.158 0.00 0.00 42.12 4.35
5286 5683 1.324005 GCTAGGACTGACGGAAGGCT 61.324 60.000 0.00 0.00 42.42 4.58
5288 5685 0.895530 TAGGACTGACGGAAGGCTTG 59.104 55.000 3.46 0.00 42.42 4.01
5289 5686 2.035442 GGACTGACGGAAGGCTTGC 61.035 63.158 3.46 6.57 42.42 4.01
5290 5687 2.032681 ACTGACGGAAGGCTTGCC 59.967 61.111 13.42 9.12 42.42 4.52
5291 5688 2.032528 CTGACGGAAGGCTTGCCA 59.967 61.111 13.42 5.41 42.42 4.92
5292 5689 2.032528 TGACGGAAGGCTTGCCAG 59.967 61.111 13.42 2.62 42.42 4.85
5293 5690 3.435186 GACGGAAGGCTTGCCAGC 61.435 66.667 13.42 0.00 46.52 4.85
5363 5798 6.735556 CAATATAAAATAGAGGAGGCCCCAT 58.264 40.000 12.24 0.00 37.41 4.00
5395 5830 8.291740 GCTGCTGGAATTGTTTGATAAAATTTT 58.708 29.630 8.75 8.75 0.00 1.82
5396 5831 9.601971 CTGCTGGAATTGTTTGATAAAATTTTG 57.398 29.630 13.76 0.00 0.00 2.44
5397 5832 9.334947 TGCTGGAATTGTTTGATAAAATTTTGA 57.665 25.926 13.76 0.00 0.00 2.69
5398 5833 9.597999 GCTGGAATTGTTTGATAAAATTTTGAC 57.402 29.630 13.76 7.76 0.00 3.18
5521 5956 5.495926 AAAACATTTTCCCATGCATGGTA 57.504 34.783 37.30 24.94 46.65 3.25
5525 5960 4.160252 ACATTTTCCCATGCATGGTAGAAC 59.840 41.667 37.30 0.00 46.65 3.01
5536 5971 3.190535 GCATGGTAGAACGTTTTGGTGAT 59.809 43.478 0.46 0.00 0.00 3.06
5709 6144 5.886960 ATTCACAAATCTTGGAGCACTAC 57.113 39.130 0.00 0.00 34.12 2.73
5825 6265 5.505173 AGTCATAATTGGCAATACAGCAC 57.495 39.130 14.05 7.08 35.83 4.40
5838 6278 1.664649 CAGCACGAGCCAGAACGAA 60.665 57.895 0.00 0.00 43.56 3.85
5846 6286 2.345641 CGAGCCAGAACGAAACTACATG 59.654 50.000 0.00 0.00 0.00 3.21
5895 6336 1.836802 TATGCAAGTTGATGCCTGCA 58.163 45.000 7.16 0.00 45.83 4.41
5918 6359 4.627467 ACTATCAAGCGACAGACACATTTC 59.373 41.667 0.00 0.00 0.00 2.17
5928 6369 4.137543 ACAGACACATTTCCCTCTTTCAC 58.862 43.478 0.00 0.00 0.00 3.18
5930 6371 4.023707 CAGACACATTTCCCTCTTTCACAC 60.024 45.833 0.00 0.00 0.00 3.82
6035 6477 4.898829 TTTCGGTGCATGGATATTTCAG 57.101 40.909 0.00 0.00 0.00 3.02
6046 6488 5.823209 TGGATATTTCAGTTGAGCATGTG 57.177 39.130 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 287 2.357517 GGATCGCTGCCGGTATGG 60.358 66.667 1.90 0.00 42.50 2.74
325 332 7.473027 TCGATTTTTCTTTCCGTATATGGTC 57.527 36.000 10.85 0.00 0.00 4.02
344 353 6.759272 AGGTATGCATGTGTAGTTATCGATT 58.241 36.000 10.16 0.00 0.00 3.34
418 427 3.941483 CTCTCTCTCTCTCTCGCTTTCTT 59.059 47.826 0.00 0.00 0.00 2.52
453 471 3.743132 TCCTAAGGGTCTCTCTCTCTCT 58.257 50.000 0.00 0.00 0.00 3.10
455 473 6.370453 GTTAATCCTAAGGGTCTCTCTCTCT 58.630 44.000 0.00 0.00 0.00 3.10
459 477 5.222278 TGGTTAATCCTAAGGGTCTCTCT 57.778 43.478 0.00 0.00 37.07 3.10
463 481 7.947782 TGAATATGGTTAATCCTAAGGGTCT 57.052 36.000 0.00 0.00 37.07 3.85
464 482 7.996644 TGTTGAATATGGTTAATCCTAAGGGTC 59.003 37.037 0.00 0.00 37.07 4.46
465 483 7.778382 GTGTTGAATATGGTTAATCCTAAGGGT 59.222 37.037 0.00 0.00 37.07 4.34
466 484 7.777910 TGTGTTGAATATGGTTAATCCTAAGGG 59.222 37.037 0.00 0.00 37.07 3.95
538 563 2.035632 CCGCTTATCCTCCTTCTCACT 58.964 52.381 0.00 0.00 0.00 3.41
560 585 2.355444 TGCGAGGCATCATATTTGTGTG 59.645 45.455 0.00 0.00 31.71 3.82
582 607 7.013655 CCACAATAGGTCCATCTCCTTTATTTG 59.986 40.741 0.00 0.00 36.60 2.32
688 713 7.636150 AATTTCAGGGAGACAAATCAGTATG 57.364 36.000 0.00 0.00 37.54 2.39
692 717 6.336842 ACAAATTTCAGGGAGACAAATCAG 57.663 37.500 0.00 0.00 0.00 2.90
693 718 8.421249 AATACAAATTTCAGGGAGACAAATCA 57.579 30.769 0.00 0.00 0.00 2.57
694 719 9.710900 AAAATACAAATTTCAGGGAGACAAATC 57.289 29.630 0.00 0.00 34.12 2.17
720 745 4.167597 GGAGACACCCCGCAAAAA 57.832 55.556 0.00 0.00 0.00 1.94
729 754 9.574516 AATAATAATGAAATACAGGGAGACACC 57.425 33.333 0.00 0.00 38.08 4.16
763 788 1.404449 CCCTACCATGTTCGTACGCAA 60.404 52.381 11.24 3.15 0.00 4.85
764 789 0.173935 CCCTACCATGTTCGTACGCA 59.826 55.000 11.24 3.96 0.00 5.24
783 808 0.814010 GACATGTATGGCACCCCGTC 60.814 60.000 0.00 0.00 35.34 4.79
786 811 1.103398 GCTGACATGTATGGCACCCC 61.103 60.000 0.00 0.00 41.84 4.95
794 819 0.821517 TCCGTTCCGCTGACATGTAT 59.178 50.000 0.00 0.00 0.00 2.29
878 903 2.026822 CCCATTGGTCAGTAGCAGTTCT 60.027 50.000 1.20 0.00 33.93 3.01
947 972 1.513586 CTCCGCGTACCGACAGAAC 60.514 63.158 4.92 0.00 40.02 3.01
949 974 3.129502 CCTCCGCGTACCGACAGA 61.130 66.667 4.92 0.00 40.02 3.41
967 1000 1.452833 GGATGGAGAAGGCACTGGC 60.453 63.158 0.00 0.00 40.86 4.85
970 1003 1.965754 GCTCGGATGGAGAAGGCACT 61.966 60.000 0.00 0.00 46.23 4.40
971 1004 1.522580 GCTCGGATGGAGAAGGCAC 60.523 63.158 0.00 0.00 46.23 5.01
972 1005 2.903357 GCTCGGATGGAGAAGGCA 59.097 61.111 0.00 0.00 46.23 4.75
973 1006 2.279784 CGCTCGGATGGAGAAGGC 60.280 66.667 0.00 0.00 46.23 4.35
974 1007 2.419198 CCGCTCGGATGGAGAAGG 59.581 66.667 1.35 0.00 46.23 3.46
1261 1316 5.237127 CGATCCAAAACAAGCAGCTGATATA 59.763 40.000 20.43 0.00 0.00 0.86
1264 1319 2.163010 CGATCCAAAACAAGCAGCTGAT 59.837 45.455 20.43 8.90 0.00 2.90
1284 1339 0.030773 TCGCAATGCTACCTAGAGCG 59.969 55.000 2.94 0.00 45.99 5.03
1302 1362 5.585390 CATTTACAGATTGGACAAGGCATC 58.415 41.667 0.00 0.00 0.00 3.91
1303 1363 4.142093 GCATTTACAGATTGGACAAGGCAT 60.142 41.667 0.00 0.00 0.00 4.40
1305 1365 3.731867 CGCATTTACAGATTGGACAAGGC 60.732 47.826 0.00 0.00 0.00 4.35
1306 1366 3.689161 TCGCATTTACAGATTGGACAAGG 59.311 43.478 0.00 0.00 0.00 3.61
1309 1369 2.677836 GCTCGCATTTACAGATTGGACA 59.322 45.455 0.00 0.00 0.00 4.02
1342 1408 6.462552 TGAACATTGGACATGTCAAGAAAA 57.537 33.333 26.47 12.61 0.00 2.29
1382 1464 1.099879 GCCGCTCATTCTGCCAGATT 61.100 55.000 0.00 0.00 0.00 2.40
1399 1481 1.762957 TCAGTGCTATCCTAGTTGGCC 59.237 52.381 0.00 0.00 35.26 5.36
1403 1485 7.372260 AGAAATGATCAGTGCTATCCTAGTT 57.628 36.000 0.58 0.00 0.00 2.24
1421 1516 9.914923 CAAATGATATGCATTGTTCAAGAAATG 57.085 29.630 3.54 0.00 46.25 2.32
1436 1531 6.919662 CAGGACCATACAAACAAATGATATGC 59.080 38.462 0.00 0.00 0.00 3.14
1492 1592 3.259123 TCTGTAAGTCAAGCAGCAGATGA 59.741 43.478 0.00 0.00 33.76 2.92
1496 1596 3.397482 AGTTCTGTAAGTCAAGCAGCAG 58.603 45.455 0.00 0.00 33.76 4.24
1497 1597 3.475566 AGTTCTGTAAGTCAAGCAGCA 57.524 42.857 0.00 0.00 33.76 4.41
1498 1598 3.369451 GCTAGTTCTGTAAGTCAAGCAGC 59.631 47.826 0.00 0.00 33.76 5.25
1514 1617 9.555727 TTTTGAGTAAGACATTTACAGCTAGTT 57.444 29.630 0.00 0.00 0.00 2.24
1533 1636 3.243401 GCAGGGAAAACGACATTTTGAGT 60.243 43.478 0.00 0.00 40.73 3.41
1553 1656 3.007398 ACAAGGAAACACAAAACCAAGCA 59.993 39.130 0.00 0.00 0.00 3.91
1559 1662 6.533367 TGCAGATTTACAAGGAAACACAAAAC 59.467 34.615 0.00 0.00 0.00 2.43
1569 1672 2.239654 CCCCTCTGCAGATTTACAAGGA 59.760 50.000 18.63 0.00 0.00 3.36
1650 1759 2.749621 CTGCAACCAGGAGAATGTAACC 59.250 50.000 0.00 0.00 38.04 2.85
1796 2071 8.584157 ACAGATGAATACTCATGAATCTAGTCC 58.416 37.037 5.26 0.00 42.60 3.85
1797 2072 9.624697 GACAGATGAATACTCATGAATCTAGTC 57.375 37.037 5.26 10.32 42.60 2.59
1824 2099 0.947244 ACAAAGCAGCCGTCAGAAAG 59.053 50.000 0.00 0.00 0.00 2.62
1874 2149 3.004210 CAGTCCAGATCGACTATGTCAGG 59.996 52.174 3.31 0.00 41.23 3.86
1875 2150 3.004210 CCAGTCCAGATCGACTATGTCAG 59.996 52.174 3.31 0.00 41.23 3.51
1879 2154 2.587522 TCCCAGTCCAGATCGACTATG 58.412 52.381 3.31 0.00 41.23 2.23
1912 2187 2.802792 TCGGTATCGACAAGGCCG 59.197 61.111 0.00 8.14 40.88 6.13
1974 2249 2.351738 CCAAAAGGCACGATTTCTCCAC 60.352 50.000 0.00 0.00 0.00 4.02
1975 2250 1.885887 CCAAAAGGCACGATTTCTCCA 59.114 47.619 0.00 0.00 0.00 3.86
1985 2260 0.817654 GCTATGGGTCCAAAAGGCAC 59.182 55.000 0.00 0.00 0.00 5.01
2045 2320 1.719529 TCCAAGTCCTCCGGTTAACA 58.280 50.000 8.10 0.00 0.00 2.41
2050 2325 0.471211 TGTCTTCCAAGTCCTCCGGT 60.471 55.000 0.00 0.00 0.00 5.28
2095 2370 8.791675 TCAGTCAGAGATTATCATAGCTACTTG 58.208 37.037 0.00 0.00 0.00 3.16
2115 2400 7.280876 GCCATCAAAGAGTACATATTTCAGTCA 59.719 37.037 0.00 0.00 0.00 3.41
2116 2401 7.254932 GGCCATCAAAGAGTACATATTTCAGTC 60.255 40.741 0.00 0.00 0.00 3.51
2117 2402 6.543831 GGCCATCAAAGAGTACATATTTCAGT 59.456 38.462 0.00 0.00 0.00 3.41
2118 2403 6.769822 AGGCCATCAAAGAGTACATATTTCAG 59.230 38.462 5.01 0.00 0.00 3.02
2166 2451 8.253113 AGTCCCTACATGCAAGAATAAAAATTG 58.747 33.333 0.00 0.00 0.00 2.32
2174 2459 4.307032 AACAGTCCCTACATGCAAGAAT 57.693 40.909 0.00 0.00 0.00 2.40
2177 2462 3.411446 TCAAACAGTCCCTACATGCAAG 58.589 45.455 0.00 0.00 0.00 4.01
2179 2464 2.290260 CCTCAAACAGTCCCTACATGCA 60.290 50.000 0.00 0.00 0.00 3.96
2199 2484 5.833667 AGTTTTCCTATATGCTTTTAGGCCC 59.166 40.000 0.00 0.00 35.85 5.80
2309 2594 2.991190 GCATCCACAAATTGCTCAACAG 59.009 45.455 0.00 0.00 33.61 3.16
2403 2688 4.223923 GGGATCATAGGAATGTACAGAGGG 59.776 50.000 0.33 0.00 34.50 4.30
2404 2689 4.223923 GGGGATCATAGGAATGTACAGAGG 59.776 50.000 0.33 0.00 34.50 3.69
2405 2690 5.090139 AGGGGATCATAGGAATGTACAGAG 58.910 45.833 0.33 0.00 34.50 3.35
2406 2691 5.093236 AGGGGATCATAGGAATGTACAGA 57.907 43.478 0.33 0.00 34.50 3.41
2407 2692 6.498651 AGTTAGGGGATCATAGGAATGTACAG 59.501 42.308 0.33 0.00 34.50 2.74
2408 2693 6.390504 AGTTAGGGGATCATAGGAATGTACA 58.609 40.000 0.00 0.00 34.50 2.90
2409 2694 6.936968 AGTTAGGGGATCATAGGAATGTAC 57.063 41.667 0.00 0.00 34.50 2.90
2410 2695 7.313731 AGAAGTTAGGGGATCATAGGAATGTA 58.686 38.462 0.00 0.00 34.50 2.29
2411 2696 6.153924 AGAAGTTAGGGGATCATAGGAATGT 58.846 40.000 0.00 0.00 34.50 2.71
2412 2697 6.694445 AGAAGTTAGGGGATCATAGGAATG 57.306 41.667 0.00 0.00 0.00 2.67
2413 2698 7.085601 AGAAGAAGTTAGGGGATCATAGGAAT 58.914 38.462 0.00 0.00 0.00 3.01
2414 2699 6.453476 AGAAGAAGTTAGGGGATCATAGGAA 58.547 40.000 0.00 0.00 0.00 3.36
2415 2700 6.044411 AGAAGAAGTTAGGGGATCATAGGA 57.956 41.667 0.00 0.00 0.00 2.94
2501 2799 1.594331 CCCCGCTTCCAATTAGTAGC 58.406 55.000 0.00 0.00 0.00 3.58
2507 2805 1.215423 AGAATAGCCCCGCTTCCAATT 59.785 47.619 0.00 0.00 40.44 2.32
2603 2901 6.747280 AGATGTTTGTTGAACTGAAAAACTCG 59.253 34.615 9.42 0.00 39.08 4.18
2612 2910 6.603237 TGTGACTAGATGTTTGTTGAACTG 57.397 37.500 0.00 0.00 39.08 3.16
2629 2927 5.979288 AGATAAGAACGGTACTTGTGACT 57.021 39.130 0.00 0.00 0.00 3.41
2774 3072 9.832445 GTTAACAGACTTAATCAATATCCAGGA 57.168 33.333 0.00 0.00 0.00 3.86
2893 3191 5.129815 AGTTACCGAGGCATAGTTTCCAATA 59.870 40.000 0.00 0.00 0.00 1.90
2921 3219 8.776376 AAAGAATGAAAAATAATGCCGATGTT 57.224 26.923 0.00 0.00 0.00 2.71
2943 3241 1.734465 GATGCCAACAGAGGTCGAAAG 59.266 52.381 0.00 0.00 0.00 2.62
3012 3310 2.892425 GGGAGAAGGCATCACGCG 60.892 66.667 3.53 3.53 43.84 6.01
3042 3340 6.764308 ACAATCATATTTCACCCACAGAAG 57.236 37.500 0.00 0.00 0.00 2.85
3135 3433 6.647067 AGAGCAGCTATTACGTAATTTCCATC 59.353 38.462 24.81 15.54 0.00 3.51
3147 3445 5.520649 GTCAACCACTAAGAGCAGCTATTAC 59.479 44.000 5.34 0.00 0.00 1.89
3196 3494 9.902684 TCGTAAATGATAAAATAAGGGGTGTAA 57.097 29.630 0.00 0.00 0.00 2.41
3198 3496 8.990163 ATCGTAAATGATAAAATAAGGGGTGT 57.010 30.769 0.00 0.00 0.00 4.16
3199 3497 9.677567 CAATCGTAAATGATAAAATAAGGGGTG 57.322 33.333 0.00 0.00 0.00 4.61
3200 3498 8.357402 GCAATCGTAAATGATAAAATAAGGGGT 58.643 33.333 0.00 0.00 0.00 4.95
3201 3499 8.576442 AGCAATCGTAAATGATAAAATAAGGGG 58.424 33.333 0.00 0.00 0.00 4.79
3207 3505 9.120538 ACACCTAGCAATCGTAAATGATAAAAT 57.879 29.630 0.00 0.00 0.00 1.82
3209 3507 8.394877 CAACACCTAGCAATCGTAAATGATAAA 58.605 33.333 0.00 0.00 0.00 1.40
3210 3508 7.011950 CCAACACCTAGCAATCGTAAATGATAA 59.988 37.037 0.00 0.00 0.00 1.75
3211 3509 6.481976 CCAACACCTAGCAATCGTAAATGATA 59.518 38.462 0.00 0.00 0.00 2.15
3214 3512 4.634004 TCCAACACCTAGCAATCGTAAATG 59.366 41.667 0.00 0.00 0.00 2.32
3215 3513 4.839121 TCCAACACCTAGCAATCGTAAAT 58.161 39.130 0.00 0.00 0.00 1.40
3216 3514 4.274602 TCCAACACCTAGCAATCGTAAA 57.725 40.909 0.00 0.00 0.00 2.01
3217 3515 3.965379 TCCAACACCTAGCAATCGTAA 57.035 42.857 0.00 0.00 0.00 3.18
3218 3516 5.801531 ATATCCAACACCTAGCAATCGTA 57.198 39.130 0.00 0.00 0.00 3.43
3219 3517 4.689612 ATATCCAACACCTAGCAATCGT 57.310 40.909 0.00 0.00 0.00 3.73
3221 3519 9.502091 TGTATAAATATCCAACACCTAGCAATC 57.498 33.333 0.00 0.00 0.00 2.67
3223 3521 8.710239 TCTGTATAAATATCCAACACCTAGCAA 58.290 33.333 0.00 0.00 0.00 3.91
3224 3522 8.148351 GTCTGTATAAATATCCAACACCTAGCA 58.852 37.037 0.00 0.00 0.00 3.49
3225 3523 7.603024 GGTCTGTATAAATATCCAACACCTAGC 59.397 40.741 0.00 0.00 0.00 3.42
3226 3524 8.871125 AGGTCTGTATAAATATCCAACACCTAG 58.129 37.037 0.00 0.00 0.00 3.02
3227 3525 8.792830 AGGTCTGTATAAATATCCAACACCTA 57.207 34.615 0.00 0.00 0.00 3.08
3228 3526 7.569111 AGAGGTCTGTATAAATATCCAACACCT 59.431 37.037 0.00 0.00 0.00 4.00
3229 3527 7.657761 CAGAGGTCTGTATAAATATCCAACACC 59.342 40.741 0.00 0.00 39.09 4.16
3230 3528 8.594881 CAGAGGTCTGTATAAATATCCAACAC 57.405 38.462 0.00 0.00 39.09 3.32
3247 3545 3.584848 AGCACCATAGAAAACAGAGGTCT 59.415 43.478 0.00 0.00 0.00 3.85
3248 3546 3.944087 AGCACCATAGAAAACAGAGGTC 58.056 45.455 0.00 0.00 0.00 3.85
3249 3547 5.013183 AGTTAGCACCATAGAAAACAGAGGT 59.987 40.000 0.00 0.00 0.00 3.85
3250 3548 5.491982 AGTTAGCACCATAGAAAACAGAGG 58.508 41.667 0.00 0.00 0.00 3.69
3251 3549 8.547967 TTTAGTTAGCACCATAGAAAACAGAG 57.452 34.615 0.00 0.00 0.00 3.35
3252 3550 9.162764 GATTTAGTTAGCACCATAGAAAACAGA 57.837 33.333 0.00 0.00 0.00 3.41
3253 3551 8.398665 GGATTTAGTTAGCACCATAGAAAACAG 58.601 37.037 0.00 0.00 0.00 3.16
3254 3552 8.107095 AGGATTTAGTTAGCACCATAGAAAACA 58.893 33.333 0.00 0.00 0.00 2.83
3255 3553 8.507524 AGGATTTAGTTAGCACCATAGAAAAC 57.492 34.615 0.00 0.00 0.00 2.43
3256 3554 7.494625 CGAGGATTTAGTTAGCACCATAGAAAA 59.505 37.037 0.00 0.00 0.00 2.29
3257 3555 6.984474 CGAGGATTTAGTTAGCACCATAGAAA 59.016 38.462 0.00 0.00 0.00 2.52
3258 3556 6.462487 CCGAGGATTTAGTTAGCACCATAGAA 60.462 42.308 0.00 0.00 0.00 2.10
3259 3557 5.010719 CCGAGGATTTAGTTAGCACCATAGA 59.989 44.000 0.00 0.00 0.00 1.98
3260 3558 5.230942 CCGAGGATTTAGTTAGCACCATAG 58.769 45.833 0.00 0.00 0.00 2.23
3261 3559 4.502604 GCCGAGGATTTAGTTAGCACCATA 60.503 45.833 0.00 0.00 0.00 2.74
3262 3560 3.744530 GCCGAGGATTTAGTTAGCACCAT 60.745 47.826 0.00 0.00 0.00 3.55
3263 3561 2.419574 GCCGAGGATTTAGTTAGCACCA 60.420 50.000 0.00 0.00 0.00 4.17
3264 3562 2.210961 GCCGAGGATTTAGTTAGCACC 58.789 52.381 0.00 0.00 0.00 5.01
3265 3563 2.608090 GTGCCGAGGATTTAGTTAGCAC 59.392 50.000 0.00 0.00 42.06 4.40
3266 3564 2.235155 TGTGCCGAGGATTTAGTTAGCA 59.765 45.455 0.00 0.00 0.00 3.49
3267 3565 2.901249 TGTGCCGAGGATTTAGTTAGC 58.099 47.619 0.00 0.00 0.00 3.09
3268 3566 4.950050 AGATGTGCCGAGGATTTAGTTAG 58.050 43.478 0.00 0.00 0.00 2.34
3269 3567 5.353394 AAGATGTGCCGAGGATTTAGTTA 57.647 39.130 0.00 0.00 0.00 2.24
3270 3568 3.914426 AGATGTGCCGAGGATTTAGTT 57.086 42.857 0.00 0.00 0.00 2.24
3271 3569 3.914426 AAGATGTGCCGAGGATTTAGT 57.086 42.857 0.00 0.00 0.00 2.24
3272 3570 4.446371 AGAAAGATGTGCCGAGGATTTAG 58.554 43.478 0.00 0.00 0.00 1.85
3273 3571 4.487714 AGAAAGATGTGCCGAGGATTTA 57.512 40.909 0.00 0.00 0.00 1.40
3274 3572 3.356529 AGAAAGATGTGCCGAGGATTT 57.643 42.857 0.00 0.00 0.00 2.17
3275 3573 3.356529 AAGAAAGATGTGCCGAGGATT 57.643 42.857 0.00 0.00 0.00 3.01
3276 3574 3.356529 AAAGAAAGATGTGCCGAGGAT 57.643 42.857 0.00 0.00 0.00 3.24
3277 3575 2.859165 AAAGAAAGATGTGCCGAGGA 57.141 45.000 0.00 0.00 0.00 3.71
3278 3576 3.077359 AGAAAAGAAAGATGTGCCGAGG 58.923 45.455 0.00 0.00 0.00 4.63
3279 3577 3.126000 GGAGAAAAGAAAGATGTGCCGAG 59.874 47.826 0.00 0.00 0.00 4.63
3280 3578 3.074412 GGAGAAAAGAAAGATGTGCCGA 58.926 45.455 0.00 0.00 0.00 5.54
3281 3579 3.077359 AGGAGAAAAGAAAGATGTGCCG 58.923 45.455 0.00 0.00 0.00 5.69
3282 3580 4.764308 AGAAGGAGAAAAGAAAGATGTGCC 59.236 41.667 0.00 0.00 0.00 5.01
3283 3581 5.390356 CGAGAAGGAGAAAAGAAAGATGTGC 60.390 44.000 0.00 0.00 0.00 4.57
3284 3582 5.698545 ACGAGAAGGAGAAAAGAAAGATGTG 59.301 40.000 0.00 0.00 0.00 3.21
3285 3583 5.859495 ACGAGAAGGAGAAAAGAAAGATGT 58.141 37.500 0.00 0.00 0.00 3.06
3286 3584 6.793492 AACGAGAAGGAGAAAAGAAAGATG 57.207 37.500 0.00 0.00 0.00 2.90
3288 3586 9.991906 TTTATAACGAGAAGGAGAAAAGAAAGA 57.008 29.630 0.00 0.00 0.00 2.52
3292 3590 9.720769 ACAATTTATAACGAGAAGGAGAAAAGA 57.279 29.630 0.00 0.00 0.00 2.52
3295 3593 9.280174 ACAACAATTTATAACGAGAAGGAGAAA 57.720 29.630 0.00 0.00 0.00 2.52
3296 3594 8.842358 ACAACAATTTATAACGAGAAGGAGAA 57.158 30.769 0.00 0.00 0.00 2.87
3297 3595 9.932207 TTACAACAATTTATAACGAGAAGGAGA 57.068 29.630 0.00 0.00 0.00 3.71
3312 3610 8.998377 GCCAACAATATCCTTTTACAACAATTT 58.002 29.630 0.00 0.00 0.00 1.82
3313 3611 8.153550 TGCCAACAATATCCTTTTACAACAATT 58.846 29.630 0.00 0.00 0.00 2.32
3338 3636 9.173939 GACGGCTTCAATTTCAATATAGATTTG 57.826 33.333 0.00 0.00 0.00 2.32
3360 3658 5.718649 ACAATTCATTACAGAATCGACGG 57.281 39.130 0.00 0.00 37.24 4.79
3373 3671 4.762765 TGTGGGCGTAGTTAACAATTCATT 59.237 37.500 8.61 0.00 0.00 2.57
3378 3676 4.076394 ACAATGTGGGCGTAGTTAACAAT 58.924 39.130 8.61 0.00 0.00 2.71
3584 3882 7.395489 AGAAAATAAGAACTGCCATGTGAAGAT 59.605 33.333 0.00 0.00 0.00 2.40
3633 3931 6.116680 TCGGTCGCAAAAACTACTTTTAAA 57.883 33.333 0.00 0.00 35.39 1.52
3653 3951 0.533755 GATGCTCCCACAGGATTCGG 60.534 60.000 0.00 0.00 42.93 4.30
3740 4041 9.129209 GTAATTTGGCTACTGAAACAAAGATTC 57.871 33.333 0.00 0.00 36.41 2.52
3744 4045 6.863126 CCTGTAATTTGGCTACTGAAACAAAG 59.137 38.462 0.00 0.00 36.41 2.77
3749 4050 7.775053 AAATCCTGTAATTTGGCTACTGAAA 57.225 32.000 0.00 0.00 0.00 2.69
3759 4060 7.880160 TGAGGGTGATAAATCCTGTAATTTG 57.120 36.000 0.00 0.00 31.50 2.32
3789 4092 9.672673 TTACTTGGAATCTCAGAAAAAGATAGG 57.327 33.333 0.00 0.00 33.15 2.57
3804 4107 6.107343 GTCACTTCCCTAGTTACTTGGAATC 58.893 44.000 14.13 4.26 36.36 2.52
3805 4108 5.546499 TGTCACTTCCCTAGTTACTTGGAAT 59.454 40.000 14.13 4.22 36.36 3.01
3808 4111 4.884668 TGTCACTTCCCTAGTTACTTGG 57.115 45.455 5.88 5.88 33.85 3.61
3883 4187 7.690256 AGATAAACTAGATGGACCAAACTGTT 58.310 34.615 0.00 6.24 0.00 3.16
3890 4194 7.301420 AGATGAGAGATAAACTAGATGGACCA 58.699 38.462 0.00 0.00 0.00 4.02
3905 4209 8.774546 TGTTCTATACAAGGAAGATGAGAGAT 57.225 34.615 0.00 0.00 32.64 2.75
3906 4210 8.774546 ATGTTCTATACAAGGAAGATGAGAGA 57.225 34.615 0.00 0.00 40.89 3.10
3967 4271 5.223449 AGTAATCACTCGGTCCTCAAAAA 57.777 39.130 0.00 0.00 0.00 1.94
3968 4272 4.817517 GAGTAATCACTCGGTCCTCAAAA 58.182 43.478 0.00 0.00 41.79 2.44
3969 4273 4.451629 GAGTAATCACTCGGTCCTCAAA 57.548 45.455 0.00 0.00 41.79 2.69
4271 4583 6.259167 TGTGTTAACTAAGGCCATATAAAGCG 59.741 38.462 5.01 0.00 0.00 4.68
4448 4760 8.649973 TTAAACGCCATAAAAATTGACAGTTT 57.350 26.923 0.00 0.00 33.50 2.66
4464 4776 2.362397 TGAACAGCCAAATTAAACGCCA 59.638 40.909 0.00 0.00 0.00 5.69
4465 4777 3.019933 TGAACAGCCAAATTAAACGCC 57.980 42.857 0.00 0.00 0.00 5.68
4491 4803 7.423199 TCTAGTAGTACATGGCTTATTTGTCG 58.577 38.462 2.52 0.00 0.00 4.35
4630 4942 1.114627 CCATCCGATCCTCTGTGTGA 58.885 55.000 0.00 0.00 0.00 3.58
4658 4970 6.260714 TGATGCGATACTTAATTCAGTTGCAT 59.739 34.615 18.70 18.70 39.57 3.96
4766 5078 9.520515 AGTTGATGGTAAACAAGAGAATTACAT 57.479 29.630 0.00 0.00 32.47 2.29
4769 5081 9.667107 CCTAGTTGATGGTAAACAAGAGAATTA 57.333 33.333 0.00 0.00 0.00 1.40
4837 5150 0.588252 CTTGTGCCGTGTTCAGGAAG 59.412 55.000 0.00 0.00 0.00 3.46
4917 5230 3.397482 AGAACACTGCTTCACATCACTC 58.603 45.455 0.00 0.00 0.00 3.51
4926 5239 6.205658 ACAAGATAGGAAAAGAACACTGCTTC 59.794 38.462 0.00 0.00 0.00 3.86
4929 5242 5.948992 ACAAGATAGGAAAAGAACACTGC 57.051 39.130 0.00 0.00 0.00 4.40
4996 5384 9.474920 GTCAAGAAATCACAATAAATTGGTTCA 57.525 29.630 7.56 0.00 41.96 3.18
5037 5425 8.812329 TCAAAGTTGACACGAATTTTAATTTGG 58.188 29.630 7.23 0.54 31.98 3.28
5071 5459 9.807649 AAATATCAATCTGTTTCAGTAAATGCC 57.192 29.630 0.00 0.00 32.61 4.40
5202 5599 7.309920 TCCAGTTAATTCCGTAAATTTTGCTC 58.690 34.615 0.00 0.00 38.53 4.26
5215 5612 4.036852 GCTGCCAATACTCCAGTTAATTCC 59.963 45.833 0.00 0.00 0.00 3.01
5232 5629 2.195567 GCACTCAGGTTTGCTGCCA 61.196 57.895 0.00 0.00 35.74 4.92
5233 5630 2.647297 GCACTCAGGTTTGCTGCC 59.353 61.111 0.00 0.00 35.74 4.85
5273 5670 2.032681 GGCAAGCCTTCCGTCAGT 59.967 61.111 3.29 0.00 0.00 3.41
5292 5689 4.966787 TTGGGTGTTCGGCTGGGC 62.967 66.667 0.00 0.00 0.00 5.36
5293 5690 2.203422 TTTGGGTGTTCGGCTGGG 60.203 61.111 0.00 0.00 0.00 4.45
5304 5739 0.109913 GAACTCCTTCCGGTTTGGGT 59.890 55.000 0.00 0.00 38.76 4.51
5356 5791 4.540735 GCAGCAATGCATGGGGCC 62.541 66.667 8.35 0.00 43.89 5.80
5363 5798 0.970640 ACAATTCCAGCAGCAATGCA 59.029 45.000 8.35 0.00 37.25 3.96
5395 5830 9.778741 AAGTTTAGTTCTCATGTTATCAAGTCA 57.221 29.630 0.00 0.00 0.00 3.41
5521 5956 6.403200 GCATACACATATCACCAAAACGTTCT 60.403 38.462 0.00 0.00 0.00 3.01
5525 5960 5.228579 TGCATACACATATCACCAAAACG 57.771 39.130 0.00 0.00 0.00 3.60
5536 5971 4.653801 ACCAGGTCACTATGCATACACATA 59.346 41.667 1.16 0.00 0.00 2.29
5822 6260 1.204312 GTTTCGTTCTGGCTCGTGC 59.796 57.895 0.00 0.00 38.76 5.34
5825 6265 2.060326 TGTAGTTTCGTTCTGGCTCG 57.940 50.000 0.00 0.00 0.00 5.03
5846 6286 6.500684 TTGAAGAACAAGGAATGCTACATC 57.499 37.500 0.00 0.00 34.20 3.06
5895 6336 3.876274 ATGTGTCTGTCGCTTGATAGT 57.124 42.857 0.00 0.00 33.02 2.12
5918 6359 7.414098 CCGTTAAATAATCTGTGTGAAAGAGGG 60.414 40.741 0.00 0.00 0.00 4.30
6010 6452 6.638610 TGAAATATCCATGCACCGAAAATTT 58.361 32.000 0.00 0.00 0.00 1.82
6013 6455 4.704540 ACTGAAATATCCATGCACCGAAAA 59.295 37.500 0.00 0.00 0.00 2.29
6046 6488 2.076803 ATCCCCGGGGTCCTAAAGC 61.077 63.158 38.73 0.00 36.47 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.