Multiple sequence alignment - TraesCS5A01G530700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G530700 chr5A 100.000 2813 0 0 1 2813 689298059 689300871 0.000000e+00 5195.0
1 TraesCS5A01G530700 chr5A 98.725 863 11 0 970 1832 688989495 688990357 0.000000e+00 1533.0
2 TraesCS5A01G530700 chr5A 83.476 466 44 17 1501 1964 689028689 689029123 1.210000e-108 403.0
3 TraesCS5A01G530700 chr5A 87.952 166 16 3 713 878 688989262 688989423 2.860000e-45 193.0
4 TraesCS5A01G530700 chr5A 94.340 53 3 0 1987 2039 688990442 688990494 6.460000e-12 82.4
5 TraesCS5A01G530700 chr5A 100.000 28 0 0 2735 2762 708961972 708961999 5.000000e-03 52.8
6 TraesCS5A01G530700 chr4D 90.018 2234 136 36 337 2546 504995806 504997976 0.000000e+00 2809.0
7 TraesCS5A01G530700 chr4D 91.374 1252 61 25 720 1961 504344626 504345840 0.000000e+00 1670.0
8 TraesCS5A01G530700 chr4D 91.433 1249 60 26 723 1961 505189769 505188558 0.000000e+00 1670.0
9 TraesCS5A01G530700 chr4D 95.035 141 7 0 2597 2737 504998267 504998407 3.650000e-54 222.0
10 TraesCS5A01G530700 chr4D 98.361 61 1 0 2526 2586 504997977 504998037 1.070000e-19 108.0
11 TraesCS5A01G530700 chr4B 89.960 1265 69 25 720 1964 651752652 651753878 0.000000e+00 1580.0
12 TraesCS5A01G530700 chr4B 89.881 1265 70 25 723 1967 651770496 651769270 0.000000e+00 1574.0
13 TraesCS5A01G530700 chr4B 97.347 867 18 1 969 1830 651021979 651022845 0.000000e+00 1469.0
14 TraesCS5A01G530700 chr4B 93.798 516 32 0 1315 1830 651768745 651768230 0.000000e+00 776.0
15 TraesCS5A01G530700 chr4B 84.153 183 21 7 165 341 651751921 651752101 1.340000e-38 171.0
16 TraesCS5A01G530700 chr4B 75.745 235 46 8 19 248 562475289 562475517 1.070000e-19 108.0
17 TraesCS5A01G530700 chr4B 94.915 59 3 0 1981 2039 651753866 651753924 2.980000e-15 93.5
18 TraesCS5A01G530700 chr4B 93.220 59 4 0 1981 2039 651769285 651769227 1.390000e-13 87.9
19 TraesCS5A01G530700 chr4B 94.340 53 3 0 1987 2039 651022928 651022980 6.460000e-12 82.4
20 TraesCS5A01G530700 chr2A 76.798 431 57 20 265 655 563921476 563921903 4.750000e-48 202.0
21 TraesCS5A01G530700 chr2A 81.463 205 25 10 147 341 279902640 279902439 3.750000e-34 156.0
22 TraesCS5A01G530700 chr2A 87.879 66 7 1 2736 2801 36193147 36193211 3.000000e-10 76.8
23 TraesCS5A01G530700 chr2A 80.899 89 11 5 161 248 680471625 680471542 6.500000e-07 65.8
24 TraesCS5A01G530700 chr6B 76.435 331 61 12 339 653 155782805 155782476 2.240000e-36 163.0
25 TraesCS5A01G530700 chr5D 76.418 335 57 14 337 655 159577966 159578294 8.060000e-36 161.0
26 TraesCS5A01G530700 chr5D 83.069 189 21 8 161 341 420645321 420645506 8.060000e-36 161.0
27 TraesCS5A01G530700 chr5D 75.595 336 62 10 337 655 159584448 159584780 6.280000e-32 148.0
28 TraesCS5A01G530700 chr5D 100.000 36 0 0 2733 2768 232285632 232285597 1.810000e-07 67.6
29 TraesCS5A01G530700 chr7D 81.579 190 22 9 161 341 552497451 552497636 8.120000e-31 145.0
30 TraesCS5A01G530700 chr7D 74.481 337 64 15 337 655 552407894 552408226 2.940000e-25 126.0
31 TraesCS5A01G530700 chr7D 87.143 70 7 2 2734 2802 117785423 117785355 8.350000e-11 78.7
32 TraesCS5A01G530700 chr4A 81.720 186 23 9 161 341 291199179 291199358 8.120000e-31 145.0
33 TraesCS5A01G530700 chr4A 95.000 40 2 0 2097 2136 133832716 133832677 2.340000e-06 63.9
34 TraesCS5A01G530700 chr7A 81.081 185 26 8 161 341 312615911 312615732 3.780000e-29 139.0
35 TraesCS5A01G530700 chr7A 83.962 106 10 5 194 297 90705058 90704958 8.300000e-16 95.3
36 TraesCS5A01G530700 chr7A 81.720 93 15 1 147 237 450213786 450213878 3.000000e-10 76.8
37 TraesCS5A01G530700 chr1D 81.081 185 25 9 161 341 345537406 345537228 3.780000e-29 139.0
38 TraesCS5A01G530700 chr3D 72.812 537 95 27 161 655 588228935 588228408 4.890000e-28 135.0
39 TraesCS5A01G530700 chr1B 74.481 337 68 11 334 655 370086579 370086912 2.270000e-26 130.0
40 TraesCS5A01G530700 chr1B 90.244 41 4 0 520 560 662227644 662227604 1.000000e-03 54.7
41 TraesCS5A01G530700 chrUn 79.781 183 29 7 163 341 286222297 286222119 2.940000e-25 126.0
42 TraesCS5A01G530700 chrUn 82.836 134 17 3 210 341 302311522 302311393 6.370000e-22 115.0
43 TraesCS5A01G530700 chrUn 73.611 216 47 7 38 248 286222488 286222278 1.080000e-09 75.0
44 TraesCS5A01G530700 chrUn 73.611 216 47 7 38 248 390049579 390049369 1.080000e-09 75.0
45 TraesCS5A01G530700 chr6D 73.235 340 69 17 333 655 369494978 369495312 1.380000e-18 104.0
46 TraesCS5A01G530700 chr6D 84.906 53 8 0 2097 2149 51337866 51337814 1.000000e-03 54.7
47 TraesCS5A01G530700 chr6D 100.000 28 0 0 2097 2124 51337206 51337179 5.000000e-03 52.8
48 TraesCS5A01G530700 chr6D 100.000 28 0 0 2097 2124 51339806 51339779 5.000000e-03 52.8
49 TraesCS5A01G530700 chr3A 77.041 196 32 11 151 341 475614459 475614272 1.780000e-17 100.0
50 TraesCS5A01G530700 chr7B 89.189 74 8 0 334 407 720341237 720341310 2.980000e-15 93.5
51 TraesCS5A01G530700 chr7B 89.706 68 5 2 2736 2802 680183750 680183684 4.990000e-13 86.1
52 TraesCS5A01G530700 chr2B 86.792 53 7 0 2097 2149 556703615 556703563 3.030000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G530700 chr5A 689298059 689300871 2812 False 5195.000000 5195 100.000000 1 2813 1 chr5A.!!$F2 2812
1 TraesCS5A01G530700 chr5A 688989262 688990494 1232 False 602.800000 1533 93.672333 713 2039 3 chr5A.!!$F4 1326
2 TraesCS5A01G530700 chr4D 504344626 504345840 1214 False 1670.000000 1670 91.374000 720 1961 1 chr4D.!!$F1 1241
3 TraesCS5A01G530700 chr4D 505188558 505189769 1211 True 1670.000000 1670 91.433000 723 1961 1 chr4D.!!$R1 1238
4 TraesCS5A01G530700 chr4D 504995806 504998407 2601 False 1046.333333 2809 94.471333 337 2737 3 chr4D.!!$F2 2400
5 TraesCS5A01G530700 chr4B 651768230 651770496 2266 True 812.633333 1574 92.299667 723 2039 3 chr4B.!!$R1 1316
6 TraesCS5A01G530700 chr4B 651021979 651022980 1001 False 775.700000 1469 95.843500 969 2039 2 chr4B.!!$F2 1070
7 TraesCS5A01G530700 chr4B 651751921 651753924 2003 False 614.833333 1580 89.676000 165 2039 3 chr4B.!!$F3 1874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.030101 CGACAAGCTTTTTCCGGCAA 59.97 50.0 0.0 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1834 2255 0.103026 CGGAAGGAGTCGCATCATCA 59.897 55.0 0.0 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.801350 TGATGATAACTCCGAAAGCAAAG 57.199 39.130 0.00 0.00 0.00 2.77
25 26 5.356882 TGATAACTCCGAAAGCAAAGTTG 57.643 39.130 0.00 0.00 34.09 3.16
26 27 5.060506 TGATAACTCCGAAAGCAAAGTTGA 58.939 37.500 0.00 0.00 34.09 3.18
27 28 3.692791 AACTCCGAAAGCAAAGTTGAC 57.307 42.857 0.00 0.00 31.05 3.18
30 31 2.554032 CTCCGAAAGCAAAGTTGACCAT 59.446 45.455 0.00 0.00 0.00 3.55
31 32 2.955660 TCCGAAAGCAAAGTTGACCATT 59.044 40.909 0.00 0.00 0.00 3.16
32 33 3.383185 TCCGAAAGCAAAGTTGACCATTT 59.617 39.130 0.00 0.00 0.00 2.32
33 34 3.735746 CCGAAAGCAAAGTTGACCATTTC 59.264 43.478 0.00 0.00 0.00 2.17
34 35 4.358851 CGAAAGCAAAGTTGACCATTTCA 58.641 39.130 0.00 0.00 0.00 2.69
45 46 4.614555 TGACCATTTCAACGATATGCAC 57.385 40.909 0.00 0.00 0.00 4.57
46 47 4.006319 TGACCATTTCAACGATATGCACA 58.994 39.130 0.00 0.00 0.00 4.57
47 48 4.457257 TGACCATTTCAACGATATGCACAA 59.543 37.500 0.00 0.00 0.00 3.33
48 49 4.732784 ACCATTTCAACGATATGCACAAC 58.267 39.130 0.00 0.00 0.00 3.32
49 50 4.458989 ACCATTTCAACGATATGCACAACT 59.541 37.500 0.00 0.00 0.00 3.16
50 51 5.048083 ACCATTTCAACGATATGCACAACTT 60.048 36.000 0.00 0.00 0.00 2.66
51 52 5.863397 CCATTTCAACGATATGCACAACTTT 59.137 36.000 0.00 0.00 0.00 2.66
52 53 6.033831 CCATTTCAACGATATGCACAACTTTC 59.966 38.462 0.00 0.00 0.00 2.62
53 54 4.320667 TCAACGATATGCACAACTTTCG 57.679 40.909 0.00 0.00 0.00 3.46
54 55 3.743911 TCAACGATATGCACAACTTTCGT 59.256 39.130 0.00 0.00 41.11 3.85
55 56 3.722555 ACGATATGCACAACTTTCGTG 57.277 42.857 3.28 0.00 38.29 4.35
56 57 3.064207 ACGATATGCACAACTTTCGTGT 58.936 40.909 3.28 0.00 38.29 4.49
57 58 4.239304 ACGATATGCACAACTTTCGTGTA 58.761 39.130 3.28 0.00 38.29 2.90
58 59 4.326278 ACGATATGCACAACTTTCGTGTAG 59.674 41.667 3.28 0.00 38.29 2.74
59 60 4.561213 CGATATGCACAACTTTCGTGTAGA 59.439 41.667 0.00 0.00 36.71 2.59
60 61 5.061684 CGATATGCACAACTTTCGTGTAGAA 59.938 40.000 0.00 0.00 36.71 2.10
61 62 3.936902 TGCACAACTTTCGTGTAGAAC 57.063 42.857 0.00 0.00 38.83 3.01
62 63 3.263261 TGCACAACTTTCGTGTAGAACA 58.737 40.909 0.00 0.00 38.83 3.18
63 64 3.062909 TGCACAACTTTCGTGTAGAACAC 59.937 43.478 0.01 0.01 45.26 3.32
64 65 3.308866 GCACAACTTTCGTGTAGAACACT 59.691 43.478 8.42 0.00 46.46 3.55
65 66 4.201783 GCACAACTTTCGTGTAGAACACTT 60.202 41.667 8.42 0.00 46.46 3.16
66 67 5.672819 GCACAACTTTCGTGTAGAACACTTT 60.673 40.000 8.42 0.00 46.46 2.66
67 68 6.311723 CACAACTTTCGTGTAGAACACTTTT 58.688 36.000 8.42 0.00 46.46 2.27
68 69 6.799925 CACAACTTTCGTGTAGAACACTTTTT 59.200 34.615 8.42 0.00 46.46 1.94
69 70 7.007099 CACAACTTTCGTGTAGAACACTTTTTC 59.993 37.037 8.42 0.00 46.46 2.29
70 71 5.792631 ACTTTCGTGTAGAACACTTTTTCG 58.207 37.500 8.42 0.00 46.46 3.46
71 72 5.349543 ACTTTCGTGTAGAACACTTTTTCGT 59.650 36.000 8.42 0.00 46.46 3.85
72 73 5.783100 TTCGTGTAGAACACTTTTTCGTT 57.217 34.783 8.42 0.00 46.46 3.85
73 74 5.783100 TCGTGTAGAACACTTTTTCGTTT 57.217 34.783 8.42 0.00 46.46 3.60
74 75 5.552807 TCGTGTAGAACACTTTTTCGTTTG 58.447 37.500 8.42 0.00 46.46 2.93
75 76 5.120519 TCGTGTAGAACACTTTTTCGTTTGT 59.879 36.000 8.42 0.00 46.46 2.83
76 77 5.224313 CGTGTAGAACACTTTTTCGTTTGTG 59.776 40.000 8.42 0.00 46.46 3.33
77 78 5.510323 GTGTAGAACACTTTTTCGTTTGTGG 59.490 40.000 2.97 0.00 45.27 4.17
78 79 5.411977 TGTAGAACACTTTTTCGTTTGTGGA 59.588 36.000 0.00 0.00 35.02 4.02
79 80 5.576447 AGAACACTTTTTCGTTTGTGGAT 57.424 34.783 0.00 0.00 35.02 3.41
80 81 6.687081 AGAACACTTTTTCGTTTGTGGATA 57.313 33.333 0.00 0.00 35.02 2.59
81 82 7.272037 AGAACACTTTTTCGTTTGTGGATAT 57.728 32.000 0.00 0.00 35.02 1.63
82 83 7.360361 AGAACACTTTTTCGTTTGTGGATATC 58.640 34.615 0.00 0.00 35.02 1.63
83 84 6.877611 ACACTTTTTCGTTTGTGGATATCT 57.122 33.333 2.05 0.00 35.02 1.98
84 85 7.272037 ACACTTTTTCGTTTGTGGATATCTT 57.728 32.000 2.05 0.00 35.02 2.40
85 86 7.138736 ACACTTTTTCGTTTGTGGATATCTTG 58.861 34.615 2.05 0.00 35.02 3.02
86 87 7.012894 ACACTTTTTCGTTTGTGGATATCTTGA 59.987 33.333 2.05 0.00 35.02 3.02
87 88 8.023128 CACTTTTTCGTTTGTGGATATCTTGAT 58.977 33.333 2.05 0.00 0.00 2.57
88 89 9.226606 ACTTTTTCGTTTGTGGATATCTTGATA 57.773 29.630 2.05 0.00 0.00 2.15
92 93 9.613428 TTTCGTTTGTGGATATCTTGATAATCT 57.387 29.630 2.05 0.00 0.00 2.40
93 94 9.613428 TTCGTTTGTGGATATCTTGATAATCTT 57.387 29.630 2.05 0.00 0.00 2.40
94 95 9.613428 TCGTTTGTGGATATCTTGATAATCTTT 57.387 29.630 2.05 0.00 0.00 2.52
99 100 9.060347 TGTGGATATCTTGATAATCTTTTCAGC 57.940 33.333 2.05 0.00 0.00 4.26
100 101 8.510505 GTGGATATCTTGATAATCTTTTCAGCC 58.489 37.037 2.05 0.00 0.00 4.85
101 102 7.667219 TGGATATCTTGATAATCTTTTCAGCCC 59.333 37.037 2.05 0.00 0.00 5.19
102 103 7.667219 GGATATCTTGATAATCTTTTCAGCCCA 59.333 37.037 2.05 0.00 0.00 5.36
103 104 9.240734 GATATCTTGATAATCTTTTCAGCCCAT 57.759 33.333 0.00 0.00 0.00 4.00
104 105 6.949352 TCTTGATAATCTTTTCAGCCCATC 57.051 37.500 0.00 0.00 0.00 3.51
105 106 6.666678 TCTTGATAATCTTTTCAGCCCATCT 58.333 36.000 0.00 0.00 0.00 2.90
106 107 7.121382 TCTTGATAATCTTTTCAGCCCATCTT 58.879 34.615 0.00 0.00 0.00 2.40
107 108 6.949352 TGATAATCTTTTCAGCCCATCTTC 57.051 37.500 0.00 0.00 0.00 2.87
108 109 6.425735 TGATAATCTTTTCAGCCCATCTTCA 58.574 36.000 0.00 0.00 0.00 3.02
109 110 6.544931 TGATAATCTTTTCAGCCCATCTTCAG 59.455 38.462 0.00 0.00 0.00 3.02
110 111 2.440409 TCTTTTCAGCCCATCTTCAGC 58.560 47.619 0.00 0.00 0.00 4.26
111 112 2.040813 TCTTTTCAGCCCATCTTCAGCT 59.959 45.455 0.00 0.00 37.32 4.24
112 113 2.592102 TTTCAGCCCATCTTCAGCTT 57.408 45.000 0.00 0.00 33.70 3.74
113 114 2.592102 TTCAGCCCATCTTCAGCTTT 57.408 45.000 0.00 0.00 33.70 3.51
114 115 2.592102 TCAGCCCATCTTCAGCTTTT 57.408 45.000 0.00 0.00 33.70 2.27
115 116 2.165167 TCAGCCCATCTTCAGCTTTTG 58.835 47.619 0.00 0.00 33.70 2.44
116 117 1.203994 CAGCCCATCTTCAGCTTTTGG 59.796 52.381 0.00 0.00 33.70 3.28
117 118 1.203100 AGCCCATCTTCAGCTTTTGGT 60.203 47.619 0.00 0.00 31.27 3.67
118 119 1.203287 GCCCATCTTCAGCTTTTGGTC 59.797 52.381 0.00 0.00 0.00 4.02
119 120 1.821136 CCCATCTTCAGCTTTTGGTCC 59.179 52.381 0.00 0.00 0.00 4.46
120 121 1.470098 CCATCTTCAGCTTTTGGTCCG 59.530 52.381 0.00 0.00 0.00 4.79
121 122 2.426522 CATCTTCAGCTTTTGGTCCGA 58.573 47.619 0.00 0.00 0.00 4.55
122 123 2.859165 TCTTCAGCTTTTGGTCCGAT 57.141 45.000 0.00 0.00 0.00 4.18
123 124 3.140325 TCTTCAGCTTTTGGTCCGATT 57.860 42.857 0.00 0.00 0.00 3.34
124 125 2.813754 TCTTCAGCTTTTGGTCCGATTG 59.186 45.455 0.00 0.00 0.00 2.67
125 126 2.559698 TCAGCTTTTGGTCCGATTGA 57.440 45.000 0.00 0.00 0.00 2.57
126 127 2.151202 TCAGCTTTTGGTCCGATTGAC 58.849 47.619 0.00 0.00 43.67 3.18
134 135 2.750815 GTCCGATTGACCTTGACCG 58.249 57.895 0.00 0.00 38.09 4.79
135 136 0.037605 GTCCGATTGACCTTGACCGT 60.038 55.000 0.00 0.00 38.09 4.83
136 137 0.682852 TCCGATTGACCTTGACCGTT 59.317 50.000 0.00 0.00 0.00 4.44
137 138 1.071071 TCCGATTGACCTTGACCGTTT 59.929 47.619 0.00 0.00 0.00 3.60
138 139 1.463444 CCGATTGACCTTGACCGTTTC 59.537 52.381 0.00 0.00 0.00 2.78
139 140 1.463444 CGATTGACCTTGACCGTTTCC 59.537 52.381 0.00 0.00 0.00 3.13
140 141 2.500229 GATTGACCTTGACCGTTTCCA 58.500 47.619 0.00 0.00 0.00 3.53
141 142 1.670791 TTGACCTTGACCGTTTCCAC 58.329 50.000 0.00 0.00 0.00 4.02
142 143 0.834612 TGACCTTGACCGTTTCCACT 59.165 50.000 0.00 0.00 0.00 4.00
143 144 1.210967 TGACCTTGACCGTTTCCACTT 59.789 47.619 0.00 0.00 0.00 3.16
144 145 1.602377 GACCTTGACCGTTTCCACTTG 59.398 52.381 0.00 0.00 0.00 3.16
145 146 0.951558 CCTTGACCGTTTCCACTTGG 59.048 55.000 0.00 0.00 0.00 3.61
146 147 0.310854 CTTGACCGTTTCCACTTGGC 59.689 55.000 0.00 0.00 34.44 4.52
147 148 1.104577 TTGACCGTTTCCACTTGGCC 61.105 55.000 0.00 0.00 34.44 5.36
148 149 2.593436 ACCGTTTCCACTTGGCCG 60.593 61.111 0.00 0.00 34.44 6.13
149 150 2.281208 CCGTTTCCACTTGGCCGA 60.281 61.111 0.00 0.00 34.44 5.54
150 151 2.613506 CCGTTTCCACTTGGCCGAC 61.614 63.158 0.00 0.00 34.44 4.79
151 152 1.890041 CGTTTCCACTTGGCCGACA 60.890 57.895 0.00 0.00 34.44 4.35
152 153 1.440938 CGTTTCCACTTGGCCGACAA 61.441 55.000 0.00 0.00 37.55 3.18
160 161 3.957383 TTGGCCGACAAGCTTTTTC 57.043 47.368 0.00 0.00 33.18 2.29
161 162 0.387565 TTGGCCGACAAGCTTTTTCC 59.612 50.000 0.00 0.00 33.18 3.13
162 163 1.081442 GGCCGACAAGCTTTTTCCG 60.081 57.895 0.00 0.00 0.00 4.30
163 164 1.081442 GCCGACAAGCTTTTTCCGG 60.081 57.895 16.62 16.62 39.88 5.14
164 165 1.081442 CCGACAAGCTTTTTCCGGC 60.081 57.895 0.00 0.00 0.00 6.13
165 166 1.652012 CGACAAGCTTTTTCCGGCA 59.348 52.632 0.00 0.00 0.00 5.69
166 167 0.030101 CGACAAGCTTTTTCCGGCAA 59.970 50.000 0.00 0.00 0.00 4.52
167 168 1.770957 GACAAGCTTTTTCCGGCAAG 58.229 50.000 0.00 0.00 0.00 4.01
168 169 1.336755 GACAAGCTTTTTCCGGCAAGA 59.663 47.619 10.99 0.00 0.00 3.02
172 173 3.303881 AGCTTTTTCCGGCAAGATTTC 57.696 42.857 10.99 0.00 0.00 2.17
191 192 1.802715 CATGCCGGCAAGCTTTTCG 60.803 57.895 36.33 10.48 0.00 3.46
192 193 2.268076 ATGCCGGCAAGCTTTTCGT 61.268 52.632 36.33 11.02 0.00 3.85
193 194 2.126850 GCCGGCAAGCTTTTCGTC 60.127 61.111 24.80 1.39 0.00 4.20
196 197 2.561373 GGCAAGCTTTTCGTCCGG 59.439 61.111 0.00 0.00 0.00 5.14
197 198 2.126850 GCAAGCTTTTCGTCCGGC 60.127 61.111 0.00 0.00 0.00 6.13
198 199 2.903547 GCAAGCTTTTCGTCCGGCA 61.904 57.895 0.00 0.00 0.00 5.69
199 200 1.652012 CAAGCTTTTCGTCCGGCAA 59.348 52.632 0.00 0.00 0.00 4.52
200 201 0.385974 CAAGCTTTTCGTCCGGCAAG 60.386 55.000 0.00 0.00 0.00 4.01
201 202 1.515521 AAGCTTTTCGTCCGGCAAGG 61.516 55.000 0.00 0.00 42.97 3.61
202 203 2.258726 GCTTTTCGTCCGGCAAGGT 61.259 57.895 0.00 0.00 41.99 3.50
203 204 1.792118 GCTTTTCGTCCGGCAAGGTT 61.792 55.000 0.00 0.00 41.99 3.50
204 205 0.666374 CTTTTCGTCCGGCAAGGTTT 59.334 50.000 0.00 0.00 41.99 3.27
205 206 1.066454 CTTTTCGTCCGGCAAGGTTTT 59.934 47.619 0.00 0.00 41.99 2.43
206 207 1.964552 TTTCGTCCGGCAAGGTTTTA 58.035 45.000 0.00 0.00 41.99 1.52
207 208 1.228533 TTCGTCCGGCAAGGTTTTAC 58.771 50.000 0.00 0.00 41.99 2.01
208 209 0.106335 TCGTCCGGCAAGGTTTTACA 59.894 50.000 0.00 0.00 41.99 2.41
209 210 0.236449 CGTCCGGCAAGGTTTTACAC 59.764 55.000 0.00 0.00 41.99 2.90
217 218 4.957266 GGTTTTACACCGGCAAGC 57.043 55.556 0.00 0.00 35.12 4.01
218 219 2.337361 GGTTTTACACCGGCAAGCT 58.663 52.632 0.00 0.00 35.12 3.74
219 220 0.671796 GGTTTTACACCGGCAAGCTT 59.328 50.000 0.00 0.00 35.12 3.74
220 221 1.067974 GGTTTTACACCGGCAAGCTTT 59.932 47.619 0.00 0.00 35.12 3.51
221 222 2.390938 GTTTTACACCGGCAAGCTTTC 58.609 47.619 0.00 0.00 0.00 2.62
222 223 0.955905 TTTACACCGGCAAGCTTTCC 59.044 50.000 4.87 4.87 0.00 3.13
223 224 0.179015 TTACACCGGCAAGCTTTCCA 60.179 50.000 15.68 0.00 0.00 3.53
224 225 0.887387 TACACCGGCAAGCTTTCCAC 60.887 55.000 15.68 0.00 0.00 4.02
238 239 1.503818 TTCCACGCCGACAAGCTTTC 61.504 55.000 0.00 0.00 0.00 2.62
244 245 2.556287 CGACAAGCTTTCCACGCC 59.444 61.111 0.00 0.00 0.00 5.68
246 247 2.966309 GACAAGCTTTCCACGCCGG 61.966 63.158 0.00 0.00 0.00 6.13
247 248 4.404654 CAAGCTTTCCACGCCGGC 62.405 66.667 19.07 19.07 33.14 6.13
307 308 3.216290 GCGAATAGCTCACGCGAG 58.784 61.111 15.93 4.59 42.65 5.03
308 309 1.298413 GCGAATAGCTCACGCGAGA 60.298 57.895 15.93 10.37 42.34 4.04
312 313 2.047769 GAATAGCTCACGCGAGACATC 58.952 52.381 15.93 0.00 42.34 3.06
344 376 2.203280 TGGGTGTTTGGTCCGCAG 60.203 61.111 0.00 0.00 0.00 5.18
348 380 0.034337 GGTGTTTGGTCCGCAGAGTA 59.966 55.000 0.00 0.00 0.00 2.59
373 405 4.153475 TGCCTCTAACTTTTGCATACGAAC 59.847 41.667 0.00 0.00 0.00 3.95
375 407 5.446073 GCCTCTAACTTTTGCATACGAACTC 60.446 44.000 0.00 0.00 0.00 3.01
409 441 9.627123 GGGGATTTATATATCAAAATCGATGGA 57.373 33.333 0.00 0.00 41.12 3.41
418 450 5.956068 TCAAAATCGATGGACACAATCAA 57.044 34.783 0.00 0.00 0.00 2.57
421 453 5.902613 AAATCGATGGACACAATCAATGT 57.097 34.783 0.00 0.00 45.34 2.71
423 455 6.609237 AATCGATGGACACAATCAATGTAG 57.391 37.500 0.00 0.00 41.46 2.74
438 477 4.115516 CAATGTAGAGTGTTCCTCCATCG 58.884 47.826 0.00 0.00 41.47 3.84
471 510 3.804036 TGAGGTATAATTGGCCGAACAG 58.196 45.455 0.00 0.00 0.00 3.16
476 515 4.213482 GGTATAATTGGCCGAACAGTGATC 59.787 45.833 0.00 0.00 0.00 2.92
515 554 5.641636 ACAACTTTGAACACAATTTTGACCC 59.358 36.000 0.00 0.00 0.00 4.46
531 570 2.108970 GACCCTTAAGATGAGGTCGGT 58.891 52.381 11.42 4.58 39.47 4.69
542 581 2.818274 GGTCGGTTGGCGATGACC 60.818 66.667 11.87 11.87 43.60 4.02
560 599 5.413309 TGACCCAAACATCAAAGTTGTTT 57.587 34.783 1.50 1.50 45.59 2.83
583 622 5.277825 TCATTCGACGATGCAAAACTTTTT 58.722 33.333 0.00 0.00 0.00 1.94
584 623 5.398122 TCATTCGACGATGCAAAACTTTTTC 59.602 36.000 0.00 0.00 0.00 2.29
585 624 4.280101 TCGACGATGCAAAACTTTTTCA 57.720 36.364 0.00 0.00 0.00 2.69
589 628 5.623264 CGACGATGCAAAACTTTTTCATGTA 59.377 36.000 4.37 0.00 0.00 2.29
590 629 6.141527 CGACGATGCAAAACTTTTTCATGTAA 59.858 34.615 4.37 0.00 0.00 2.41
617 656 6.581171 ACCTTTTCATTTGAGGACATCTTC 57.419 37.500 0.00 0.00 34.61 2.87
636 675 5.448438 TCTTCATTGTGTTTTGTATCGTGC 58.552 37.500 0.00 0.00 0.00 5.34
641 680 4.576216 TGTGTTTTGTATCGTGCCAAAT 57.424 36.364 0.00 0.00 31.20 2.32
655 694 1.272212 GCCAAATTCGGGTGTCAACAT 59.728 47.619 0.00 0.00 0.00 2.71
674 713 1.431496 TAAGGACGTTAAACTGCCGC 58.569 50.000 0.00 0.00 0.00 6.53
675 714 0.533308 AAGGACGTTAAACTGCCGCA 60.533 50.000 0.00 0.00 0.00 5.69
678 718 1.391787 GACGTTAAACTGCCGCAAAC 58.608 50.000 0.00 0.00 0.00 2.93
713 753 3.201290 ACAGAGTTGAAGTTGACAGCAG 58.799 45.455 0.00 0.00 0.00 4.24
727 1121 3.339253 ACAGCAGCATACTTGATGTCA 57.661 42.857 0.00 0.00 40.86 3.58
758 1152 4.406456 ACTTGAACCTTCACCATGCATAA 58.594 39.130 0.00 0.00 36.83 1.90
798 1202 0.331616 ACATAGGTGGCTTTGGTCCC 59.668 55.000 0.00 0.00 0.00 4.46
803 1207 1.228154 GTGGCTTTGGTCCCGAAGT 60.228 57.895 13.60 0.00 39.13 3.01
917 1323 3.311110 TCCCGGTTTGCTCGCTCT 61.311 61.111 0.00 0.00 0.00 4.09
973 1388 3.181451 CCCATGGATAGCACATACACAGT 60.181 47.826 15.22 0.00 0.00 3.55
979 1394 1.527034 AGCACATACACAGTGGCAAG 58.473 50.000 5.31 0.00 37.46 4.01
1135 1556 0.602905 GAGCTACGGCAACAAGTGGT 60.603 55.000 0.00 0.00 41.70 4.16
1197 1618 4.636435 CCCAAGGACAACGGCGGT 62.636 66.667 13.24 0.00 0.00 5.68
1833 2254 7.680730 ACTGAAGATGATGATGATGATGATGA 58.319 34.615 0.00 0.00 0.00 2.92
1834 2255 8.325046 ACTGAAGATGATGATGATGATGATGAT 58.675 33.333 0.00 0.00 0.00 2.45
1835 2256 8.498054 TGAAGATGATGATGATGATGATGATG 57.502 34.615 0.00 0.00 0.00 3.07
1836 2257 8.321353 TGAAGATGATGATGATGATGATGATGA 58.679 33.333 0.00 0.00 0.00 2.92
1837 2258 9.336171 GAAGATGATGATGATGATGATGATGAT 57.664 33.333 0.00 0.00 0.00 2.45
1843 2264 5.294306 TGATGATGATGATGATGATGATGCG 59.706 40.000 0.00 0.00 0.00 4.73
1856 2277 4.514577 ATGCGACTCCTTCCGGCG 62.515 66.667 0.00 0.00 0.00 6.46
1886 2311 9.035890 AGGCCAGCTTAATTAATTAACTTCTTT 57.964 29.630 15.19 0.00 0.00 2.52
1887 2312 9.653287 GGCCAGCTTAATTAATTAACTTCTTTT 57.347 29.630 15.19 0.00 0.00 2.27
1962 2393 4.145052 TGCGATGAGACCATGAGTATACT 58.855 43.478 4.68 4.68 32.09 2.12
1963 2394 4.584743 TGCGATGAGACCATGAGTATACTT 59.415 41.667 6.88 0.00 32.09 2.24
1964 2395 5.069119 TGCGATGAGACCATGAGTATACTTT 59.931 40.000 6.88 0.00 32.09 2.66
1965 2396 5.986135 GCGATGAGACCATGAGTATACTTTT 59.014 40.000 6.88 0.00 32.09 2.27
1966 2397 6.480320 GCGATGAGACCATGAGTATACTTTTT 59.520 38.462 6.88 0.00 32.09 1.94
1986 2417 4.993705 TTTTTGAGGGTAGACCATGAGT 57.006 40.909 0.21 0.00 43.89 3.41
1988 2419 6.636454 TTTTTGAGGGTAGACCATGAGTAT 57.364 37.500 0.21 0.00 43.89 2.12
1989 2420 7.743116 TTTTTGAGGGTAGACCATGAGTATA 57.257 36.000 0.21 0.00 43.89 1.47
1990 2421 6.726490 TTTGAGGGTAGACCATGAGTATAC 57.274 41.667 0.21 2.51 41.55 1.47
2031 2462 0.109039 GGAGAGAGCGTGGACAACTC 60.109 60.000 0.00 0.00 0.00 3.01
2072 2503 2.863740 CTGTGTCGTGCAACAAGTTCTA 59.136 45.455 0.00 0.00 35.74 2.10
2077 2508 1.069906 CGTGCAACAAGTTCTAGGTGC 60.070 52.381 0.00 0.00 35.74 5.01
2100 2531 6.351327 CAACCTTGCAACTAGCTAATAGTC 57.649 41.667 0.00 0.00 44.26 2.59
2101 2532 5.941555 ACCTTGCAACTAGCTAATAGTCT 57.058 39.130 0.00 0.00 44.26 3.24
2102 2533 7.265673 CAACCTTGCAACTAGCTAATAGTCTA 58.734 38.462 0.00 0.00 44.26 2.59
2161 2592 1.427435 AATTTTCGTTTGCCCATGCG 58.573 45.000 0.00 0.00 41.78 4.73
2169 2600 2.669670 CGTTTGCCCATGCGTATTTTCA 60.670 45.455 0.00 0.00 41.78 2.69
2228 2664 0.393808 TTGTTATTGGGGCTCGGCTC 60.394 55.000 0.00 0.00 0.00 4.70
2248 2684 1.529438 CGACGCCACACTGTTGTTATT 59.471 47.619 0.00 0.00 31.66 1.40
2261 2697 3.139077 GTTGTTATTGGGCCTCGGATAG 58.861 50.000 4.53 0.00 0.00 2.08
2265 2701 4.104102 TGTTATTGGGCCTCGGATAGAAAT 59.896 41.667 4.53 0.00 0.00 2.17
2266 2702 2.930826 TTGGGCCTCGGATAGAAATC 57.069 50.000 4.53 0.00 0.00 2.17
2275 2711 5.927115 GCCTCGGATAGAAATCGTTTATTCT 59.073 40.000 0.00 0.00 39.19 2.40
2276 2712 6.128795 GCCTCGGATAGAAATCGTTTATTCTG 60.129 42.308 0.00 0.00 36.59 3.02
2277 2713 6.128795 CCTCGGATAGAAATCGTTTATTCTGC 60.129 42.308 0.00 0.00 36.59 4.26
2278 2714 6.513180 TCGGATAGAAATCGTTTATTCTGCT 58.487 36.000 0.00 0.00 36.59 4.24
2279 2715 6.420903 TCGGATAGAAATCGTTTATTCTGCTG 59.579 38.462 0.00 0.00 36.59 4.41
2280 2716 6.201044 CGGATAGAAATCGTTTATTCTGCTGT 59.799 38.462 0.00 0.00 36.59 4.40
2295 2731 0.247736 GCTGTCCCTTCATCTGTCGT 59.752 55.000 0.00 0.00 0.00 4.34
2298 2734 1.067846 TGTCCCTTCATCTGTCGTTCG 60.068 52.381 0.00 0.00 0.00 3.95
2299 2735 0.530744 TCCCTTCATCTGTCGTTCGG 59.469 55.000 0.00 0.00 0.00 4.30
2316 2752 0.954452 CGGAGAGCAGCAAAAAGGTT 59.046 50.000 0.00 0.00 0.00 3.50
2323 2759 5.776744 AGAGCAGCAAAAAGGTTATTCTTG 58.223 37.500 0.00 0.00 0.00 3.02
2325 2761 4.057432 GCAGCAAAAAGGTTATTCTTGCA 58.943 39.130 7.72 0.00 43.77 4.08
2336 2772 4.807304 GGTTATTCTTGCATGCAAGGATTG 59.193 41.667 43.98 28.25 46.86 2.67
2460 2896 3.260380 TCGTTGGTTCTTATACGGGGAAA 59.740 43.478 0.00 0.00 34.93 3.13
2495 2931 3.639538 ACTAATAACACTATCGGCTGCG 58.360 45.455 0.00 0.00 0.00 5.18
2586 3044 6.182507 TGCCTATTCTAATACGGGATGTTT 57.817 37.500 0.00 0.00 0.00 2.83
2588 3046 7.737869 TGCCTATTCTAATACGGGATGTTTTA 58.262 34.615 0.00 0.00 0.00 1.52
2589 3047 8.212312 TGCCTATTCTAATACGGGATGTTTTAA 58.788 33.333 0.00 0.00 0.00 1.52
2590 3048 9.059260 GCCTATTCTAATACGGGATGTTTTAAA 57.941 33.333 0.00 0.00 0.00 1.52
2594 3052 8.726870 TTCTAATACGGGATGTTTTAAAGGAG 57.273 34.615 0.00 0.00 0.00 3.69
2595 3053 7.854337 TCTAATACGGGATGTTTTAAAGGAGT 58.146 34.615 0.00 0.00 0.00 3.85
2613 3290 3.492829 GGAGTTAAATAGAGGGTGAGGCG 60.493 52.174 0.00 0.00 0.00 5.52
2623 3300 1.689273 AGGGTGAGGCGATGATCTAAC 59.311 52.381 0.00 0.00 0.00 2.34
2657 3334 0.323178 CCACAAGCAGAGCTGGGAAT 60.323 55.000 0.00 0.00 39.62 3.01
2685 3378 6.980397 CCCAATTAAAGATTGTGTAATGAGCC 59.020 38.462 0.00 0.00 0.00 4.70
2697 3390 1.686355 AATGAGCCAACACCGTTGAA 58.314 45.000 8.40 0.00 0.00 2.69
2737 3430 1.756538 CATCGGGGAAATGGAAAAGGG 59.243 52.381 0.00 0.00 0.00 3.95
2740 3433 1.548719 CGGGGAAATGGAAAAGGGAAC 59.451 52.381 0.00 0.00 0.00 3.62
2755 3448 2.317530 GGAACCACTAGGCATCAGAC 57.682 55.000 0.00 0.00 39.06 3.51
2756 3449 1.834263 GGAACCACTAGGCATCAGACT 59.166 52.381 0.00 0.00 39.06 3.24
2758 3451 3.181474 GGAACCACTAGGCATCAGACTAC 60.181 52.174 0.00 0.00 39.06 2.73
2759 3452 3.390175 ACCACTAGGCATCAGACTACT 57.610 47.619 0.00 0.00 39.06 2.57
2760 3453 3.027412 ACCACTAGGCATCAGACTACTG 58.973 50.000 0.00 0.00 41.15 2.74
2770 3463 1.950216 TCAGACTACTGATGCCTAGCG 59.050 52.381 0.00 0.00 46.55 4.26
2771 3464 1.678627 CAGACTACTGATGCCTAGCGT 59.321 52.381 0.00 0.00 46.03 5.07
2772 3465 2.099921 CAGACTACTGATGCCTAGCGTT 59.900 50.000 0.00 0.00 46.03 4.84
2773 3466 2.359531 AGACTACTGATGCCTAGCGTTC 59.640 50.000 0.00 0.00 0.00 3.95
2774 3467 1.409427 ACTACTGATGCCTAGCGTTCC 59.591 52.381 0.00 0.00 0.00 3.62
2775 3468 1.409064 CTACTGATGCCTAGCGTTCCA 59.591 52.381 0.00 0.00 0.00 3.53
2776 3469 0.833287 ACTGATGCCTAGCGTTCCAT 59.167 50.000 0.00 0.00 0.00 3.41
2777 3470 1.202580 ACTGATGCCTAGCGTTCCATC 60.203 52.381 0.00 0.00 35.74 3.51
2778 3471 0.829990 TGATGCCTAGCGTTCCATCA 59.170 50.000 8.42 8.42 41.06 3.07
2781 3474 0.175760 TGCCTAGCGTTCCATCAGAC 59.824 55.000 0.00 0.00 0.00 3.51
2784 3477 1.202463 CCTAGCGTTCCATCAGACCAG 60.202 57.143 0.00 0.00 0.00 4.00
2785 3478 1.478510 CTAGCGTTCCATCAGACCAGT 59.521 52.381 0.00 0.00 0.00 4.00
2786 3479 0.036952 AGCGTTCCATCAGACCAGTG 60.037 55.000 0.00 0.00 0.00 3.66
2788 3481 1.354337 CGTTCCATCAGACCAGTGCG 61.354 60.000 0.00 0.00 0.00 5.34
2789 3482 0.320771 GTTCCATCAGACCAGTGCGT 60.321 55.000 0.00 0.00 0.00 5.24
2790 3483 0.320683 TTCCATCAGACCAGTGCGTG 60.321 55.000 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.245531 ACTTTGCTTTCGGAGTTATCATCA 58.754 37.500 0.00 0.00 0.00 3.07
3 4 5.049680 GTCAACTTTGCTTTCGGAGTTATCA 60.050 40.000 0.00 0.00 31.58 2.15
4 5 5.383130 GTCAACTTTGCTTTCGGAGTTATC 58.617 41.667 0.00 0.00 31.58 1.75
5 6 4.215613 GGTCAACTTTGCTTTCGGAGTTAT 59.784 41.667 0.00 0.00 31.58 1.89
7 8 2.357952 GGTCAACTTTGCTTTCGGAGTT 59.642 45.455 0.00 0.00 32.89 3.01
8 9 1.947456 GGTCAACTTTGCTTTCGGAGT 59.053 47.619 0.00 0.00 0.00 3.85
9 10 1.946768 TGGTCAACTTTGCTTTCGGAG 59.053 47.619 0.00 0.00 0.00 4.63
10 11 2.045561 TGGTCAACTTTGCTTTCGGA 57.954 45.000 0.00 0.00 0.00 4.55
12 13 4.358851 TGAAATGGTCAACTTTGCTTTCG 58.641 39.130 0.00 0.00 31.51 3.46
25 26 4.614555 TGTGCATATCGTTGAAATGGTC 57.385 40.909 0.00 0.00 0.00 4.02
26 27 4.458989 AGTTGTGCATATCGTTGAAATGGT 59.541 37.500 0.00 0.00 0.00 3.55
27 28 4.985413 AGTTGTGCATATCGTTGAAATGG 58.015 39.130 0.00 0.00 0.00 3.16
30 31 5.143660 CGAAAGTTGTGCATATCGTTGAAA 58.856 37.500 0.00 0.00 0.00 2.69
31 32 4.212425 ACGAAAGTTGTGCATATCGTTGAA 59.788 37.500 4.27 0.00 46.40 2.69
32 33 3.743911 ACGAAAGTTGTGCATATCGTTGA 59.256 39.130 4.27 0.00 46.40 3.18
33 34 3.840209 CACGAAAGTTGTGCATATCGTTG 59.160 43.478 7.04 1.33 46.40 4.10
34 35 3.496884 ACACGAAAGTTGTGCATATCGTT 59.503 39.130 7.04 0.23 46.40 3.85
36 37 3.722555 ACACGAAAGTTGTGCATATCG 57.277 42.857 3.07 3.07 46.40 2.92
37 38 6.128661 TGTTCTACACGAAAGTTGTGCATATC 60.129 38.462 0.00 0.00 46.40 1.63
39 40 5.050634 GTGTTCTACACGAAAGTTGTGCATA 60.051 40.000 0.00 0.00 46.40 3.14
40 41 3.874543 TGTTCTACACGAAAGTTGTGCAT 59.125 39.130 0.00 0.00 46.40 3.96
41 42 3.062909 GTGTTCTACACGAAAGTTGTGCA 59.937 43.478 0.00 0.00 46.40 4.57
42 43 3.604392 GTGTTCTACACGAAAGTTGTGC 58.396 45.455 0.00 0.00 46.40 4.57
54 55 5.411977 TCCACAAACGAAAAAGTGTTCTACA 59.588 36.000 0.00 0.00 0.00 2.74
55 56 5.871539 TCCACAAACGAAAAAGTGTTCTAC 58.128 37.500 0.00 0.00 0.00 2.59
56 57 6.687081 ATCCACAAACGAAAAAGTGTTCTA 57.313 33.333 0.00 0.00 0.00 2.10
57 58 5.576447 ATCCACAAACGAAAAAGTGTTCT 57.424 34.783 0.00 0.00 0.00 3.01
58 59 7.360361 AGATATCCACAAACGAAAAAGTGTTC 58.640 34.615 0.00 0.00 0.00 3.18
59 60 7.272037 AGATATCCACAAACGAAAAAGTGTT 57.728 32.000 0.00 0.00 0.00 3.32
60 61 6.877611 AGATATCCACAAACGAAAAAGTGT 57.122 33.333 0.00 0.00 0.00 3.55
61 62 7.359595 TCAAGATATCCACAAACGAAAAAGTG 58.640 34.615 0.00 0.00 0.00 3.16
62 63 7.504924 TCAAGATATCCACAAACGAAAAAGT 57.495 32.000 0.00 0.00 0.00 2.66
66 67 9.613428 AGATTATCAAGATATCCACAAACGAAA 57.387 29.630 0.00 0.00 0.00 3.46
67 68 9.613428 AAGATTATCAAGATATCCACAAACGAA 57.387 29.630 0.00 0.00 0.00 3.85
68 69 9.613428 AAAGATTATCAAGATATCCACAAACGA 57.387 29.630 0.00 0.00 0.00 3.85
73 74 9.060347 GCTGAAAAGATTATCAAGATATCCACA 57.940 33.333 0.00 0.00 0.00 4.17
74 75 8.510505 GGCTGAAAAGATTATCAAGATATCCAC 58.489 37.037 0.00 0.00 0.00 4.02
75 76 7.667219 GGGCTGAAAAGATTATCAAGATATCCA 59.333 37.037 0.00 0.00 0.00 3.41
76 77 7.667219 TGGGCTGAAAAGATTATCAAGATATCC 59.333 37.037 0.00 0.00 0.00 2.59
77 78 8.627208 TGGGCTGAAAAGATTATCAAGATATC 57.373 34.615 0.00 0.00 0.00 1.63
78 79 9.240734 GATGGGCTGAAAAGATTATCAAGATAT 57.759 33.333 0.00 0.00 0.00 1.63
79 80 8.443176 AGATGGGCTGAAAAGATTATCAAGATA 58.557 33.333 0.00 0.00 0.00 1.98
80 81 7.296098 AGATGGGCTGAAAAGATTATCAAGAT 58.704 34.615 0.00 0.00 0.00 2.40
81 82 6.666678 AGATGGGCTGAAAAGATTATCAAGA 58.333 36.000 0.00 0.00 0.00 3.02
82 83 6.956202 AGATGGGCTGAAAAGATTATCAAG 57.044 37.500 0.00 0.00 0.00 3.02
83 84 6.891361 TGAAGATGGGCTGAAAAGATTATCAA 59.109 34.615 0.00 0.00 0.00 2.57
84 85 6.425735 TGAAGATGGGCTGAAAAGATTATCA 58.574 36.000 0.00 0.00 0.00 2.15
85 86 6.514705 GCTGAAGATGGGCTGAAAAGATTATC 60.515 42.308 0.00 0.00 0.00 1.75
86 87 5.301298 GCTGAAGATGGGCTGAAAAGATTAT 59.699 40.000 0.00 0.00 0.00 1.28
87 88 4.641989 GCTGAAGATGGGCTGAAAAGATTA 59.358 41.667 0.00 0.00 0.00 1.75
88 89 3.446516 GCTGAAGATGGGCTGAAAAGATT 59.553 43.478 0.00 0.00 0.00 2.40
89 90 3.022406 GCTGAAGATGGGCTGAAAAGAT 58.978 45.455 0.00 0.00 0.00 2.40
90 91 2.040813 AGCTGAAGATGGGCTGAAAAGA 59.959 45.455 0.00 0.00 34.82 2.52
91 92 2.444421 AGCTGAAGATGGGCTGAAAAG 58.556 47.619 0.00 0.00 34.82 2.27
92 93 2.592102 AGCTGAAGATGGGCTGAAAA 57.408 45.000 0.00 0.00 34.82 2.29
93 94 2.592102 AAGCTGAAGATGGGCTGAAA 57.408 45.000 0.00 0.00 36.37 2.69
94 95 2.559668 CAAAAGCTGAAGATGGGCTGAA 59.440 45.455 0.00 0.00 36.37 3.02
95 96 2.165167 CAAAAGCTGAAGATGGGCTGA 58.835 47.619 0.00 0.00 36.37 4.26
96 97 1.203994 CCAAAAGCTGAAGATGGGCTG 59.796 52.381 0.00 0.00 36.37 4.85
97 98 1.203100 ACCAAAAGCTGAAGATGGGCT 60.203 47.619 0.00 0.00 37.99 5.19
98 99 1.203287 GACCAAAAGCTGAAGATGGGC 59.797 52.381 0.00 0.00 35.44 5.36
99 100 1.821136 GGACCAAAAGCTGAAGATGGG 59.179 52.381 0.00 0.00 35.44 4.00
100 101 1.470098 CGGACCAAAAGCTGAAGATGG 59.530 52.381 0.00 0.00 37.19 3.51
101 102 2.426522 TCGGACCAAAAGCTGAAGATG 58.573 47.619 0.00 0.00 0.00 2.90
102 103 2.859165 TCGGACCAAAAGCTGAAGAT 57.141 45.000 0.00 0.00 0.00 2.40
103 104 2.813754 CAATCGGACCAAAAGCTGAAGA 59.186 45.455 0.00 0.00 0.00 2.87
104 105 2.813754 TCAATCGGACCAAAAGCTGAAG 59.186 45.455 0.00 0.00 0.00 3.02
105 106 2.552315 GTCAATCGGACCAAAAGCTGAA 59.448 45.455 0.00 0.00 40.83 3.02
106 107 2.151202 GTCAATCGGACCAAAAGCTGA 58.849 47.619 0.00 0.00 40.83 4.26
107 108 2.619013 GTCAATCGGACCAAAAGCTG 57.381 50.000 0.00 0.00 40.83 4.24
116 117 0.037605 ACGGTCAAGGTCAATCGGAC 60.038 55.000 0.00 0.00 46.20 4.79
117 118 0.682852 AACGGTCAAGGTCAATCGGA 59.317 50.000 0.00 0.00 0.00 4.55
118 119 1.463444 GAAACGGTCAAGGTCAATCGG 59.537 52.381 0.00 0.00 0.00 4.18
119 120 1.463444 GGAAACGGTCAAGGTCAATCG 59.537 52.381 0.00 0.00 0.00 3.34
120 121 2.225727 GTGGAAACGGTCAAGGTCAATC 59.774 50.000 0.00 0.00 0.00 2.67
121 122 2.158667 AGTGGAAACGGTCAAGGTCAAT 60.159 45.455 0.00 0.00 0.00 2.57
122 123 1.210967 AGTGGAAACGGTCAAGGTCAA 59.789 47.619 0.00 0.00 0.00 3.18
123 124 0.834612 AGTGGAAACGGTCAAGGTCA 59.165 50.000 0.00 0.00 0.00 4.02
124 125 1.602377 CAAGTGGAAACGGTCAAGGTC 59.398 52.381 0.00 0.00 0.00 3.85
125 126 1.675552 CAAGTGGAAACGGTCAAGGT 58.324 50.000 0.00 0.00 0.00 3.50
126 127 0.951558 CCAAGTGGAAACGGTCAAGG 59.048 55.000 0.00 0.00 37.39 3.61
127 128 0.310854 GCCAAGTGGAAACGGTCAAG 59.689 55.000 0.18 0.00 37.39 3.02
128 129 1.104577 GGCCAAGTGGAAACGGTCAA 61.105 55.000 0.00 0.00 37.39 3.18
129 130 1.527380 GGCCAAGTGGAAACGGTCA 60.527 57.895 0.00 0.00 37.39 4.02
130 131 2.613506 CGGCCAAGTGGAAACGGTC 61.614 63.158 2.24 0.00 37.39 4.79
131 132 2.593436 CGGCCAAGTGGAAACGGT 60.593 61.111 2.24 0.00 37.39 4.83
132 133 2.281208 TCGGCCAAGTGGAAACGG 60.281 61.111 2.24 0.00 37.39 4.44
133 134 1.440938 TTGTCGGCCAAGTGGAAACG 61.441 55.000 2.24 2.49 37.39 3.60
134 135 0.310854 CTTGTCGGCCAAGTGGAAAC 59.689 55.000 2.24 0.00 44.64 2.78
135 136 2.714259 CTTGTCGGCCAAGTGGAAA 58.286 52.632 2.24 0.00 44.64 3.13
136 137 4.473643 CTTGTCGGCCAAGTGGAA 57.526 55.556 2.24 0.00 44.64 3.53
142 143 0.387565 GGAAAAAGCTTGTCGGCCAA 59.612 50.000 2.24 0.00 0.00 4.52
143 144 1.791103 CGGAAAAAGCTTGTCGGCCA 61.791 55.000 2.24 0.00 0.00 5.36
144 145 1.081442 CGGAAAAAGCTTGTCGGCC 60.081 57.895 0.00 0.00 0.00 6.13
145 146 1.081442 CCGGAAAAAGCTTGTCGGC 60.081 57.895 0.00 0.00 0.00 5.54
146 147 1.081442 GCCGGAAAAAGCTTGTCGG 60.081 57.895 5.05 19.18 40.33 4.79
147 148 0.030101 TTGCCGGAAAAAGCTTGTCG 59.970 50.000 5.05 1.83 0.00 4.35
148 149 1.336755 TCTTGCCGGAAAAAGCTTGTC 59.663 47.619 5.05 0.10 0.00 3.18
149 150 1.398692 TCTTGCCGGAAAAAGCTTGT 58.601 45.000 5.05 0.00 0.00 3.16
150 151 2.730550 ATCTTGCCGGAAAAAGCTTG 57.269 45.000 5.05 0.00 0.00 4.01
151 152 3.554960 GGAAATCTTGCCGGAAAAAGCTT 60.555 43.478 5.05 0.00 0.00 3.74
152 153 2.029020 GGAAATCTTGCCGGAAAAAGCT 60.029 45.455 5.05 0.00 0.00 3.74
153 154 2.288763 TGGAAATCTTGCCGGAAAAAGC 60.289 45.455 5.05 0.00 0.00 3.51
154 155 3.658757 TGGAAATCTTGCCGGAAAAAG 57.341 42.857 5.05 5.54 0.00 2.27
155 156 3.864160 GCATGGAAATCTTGCCGGAAAAA 60.864 43.478 5.05 0.00 39.70 1.94
156 157 2.353605 GCATGGAAATCTTGCCGGAAAA 60.354 45.455 5.05 0.00 39.70 2.29
157 158 1.204467 GCATGGAAATCTTGCCGGAAA 59.796 47.619 5.05 0.00 39.70 3.13
158 159 0.817013 GCATGGAAATCTTGCCGGAA 59.183 50.000 5.05 0.00 39.70 4.30
159 160 2.492418 GCATGGAAATCTTGCCGGA 58.508 52.632 5.05 0.00 39.70 5.14
163 164 1.227060 GCCGGCATGGAAATCTTGC 60.227 57.895 24.80 0.00 43.38 4.01
164 165 0.531657 TTGCCGGCATGGAAATCTTG 59.468 50.000 33.25 0.00 42.00 3.02
165 166 0.819582 CTTGCCGGCATGGAAATCTT 59.180 50.000 33.25 0.00 42.00 2.40
166 167 1.669999 GCTTGCCGGCATGGAAATCT 61.670 55.000 35.18 0.00 42.00 2.40
167 168 1.227060 GCTTGCCGGCATGGAAATC 60.227 57.895 35.18 19.39 42.00 2.17
168 169 1.259840 AAGCTTGCCGGCATGGAAAT 61.260 50.000 35.18 17.08 42.00 2.17
172 173 1.446618 GAAAAGCTTGCCGGCATGG 60.447 57.895 35.18 28.14 42.50 3.66
191 192 0.594602 GGTGTAAAACCTTGCCGGAC 59.405 55.000 5.05 0.00 46.55 4.79
192 193 3.024431 GGTGTAAAACCTTGCCGGA 57.976 52.632 5.05 0.00 46.55 5.14
200 201 0.671796 AAGCTTGCCGGTGTAAAACC 59.328 50.000 1.90 0.00 46.60 3.27
201 202 2.390938 GAAAGCTTGCCGGTGTAAAAC 58.609 47.619 1.90 0.00 0.00 2.43
202 203 1.338655 GGAAAGCTTGCCGGTGTAAAA 59.661 47.619 8.02 0.00 0.00 1.52
203 204 0.955905 GGAAAGCTTGCCGGTGTAAA 59.044 50.000 8.02 0.00 0.00 2.01
204 205 0.179015 TGGAAAGCTTGCCGGTGTAA 60.179 50.000 19.09 0.00 0.00 2.41
205 206 0.887387 GTGGAAAGCTTGCCGGTGTA 60.887 55.000 19.09 0.00 0.00 2.90
206 207 2.193536 GTGGAAAGCTTGCCGGTGT 61.194 57.895 19.09 0.00 0.00 4.16
207 208 2.644992 GTGGAAAGCTTGCCGGTG 59.355 61.111 19.09 0.00 0.00 4.94
208 209 2.978010 CGTGGAAAGCTTGCCGGT 60.978 61.111 19.09 0.00 0.00 5.28
209 210 4.404654 GCGTGGAAAGCTTGCCGG 62.405 66.667 19.09 13.92 38.67 6.13
210 211 4.404654 GGCGTGGAAAGCTTGCCG 62.405 66.667 19.09 8.81 42.50 5.69
211 212 4.404654 CGGCGTGGAAAGCTTGCC 62.405 66.667 17.58 17.58 42.50 4.52
212 213 3.353836 TCGGCGTGGAAAGCTTGC 61.354 61.111 6.85 0.00 42.50 4.01
213 214 1.781025 TTGTCGGCGTGGAAAGCTTG 61.781 55.000 6.85 0.00 42.50 4.01
214 215 1.507141 CTTGTCGGCGTGGAAAGCTT 61.507 55.000 6.85 0.00 42.50 3.74
215 216 1.961277 CTTGTCGGCGTGGAAAGCT 60.961 57.895 6.85 0.00 42.50 3.74
216 217 2.556287 CTTGTCGGCGTGGAAAGC 59.444 61.111 6.85 0.00 42.00 3.51
217 218 1.507141 AAGCTTGTCGGCGTGGAAAG 61.507 55.000 6.85 7.91 37.29 2.62
218 219 1.098712 AAAGCTTGTCGGCGTGGAAA 61.099 50.000 6.85 0.00 37.29 3.13
219 220 1.503818 GAAAGCTTGTCGGCGTGGAA 61.504 55.000 6.85 0.00 37.29 3.53
220 221 1.959226 GAAAGCTTGTCGGCGTGGA 60.959 57.895 6.85 0.00 37.29 4.02
221 222 2.556287 GAAAGCTTGTCGGCGTGG 59.444 61.111 6.85 0.00 37.29 4.94
222 223 2.250939 TGGAAAGCTTGTCGGCGTG 61.251 57.895 6.85 0.00 37.29 5.34
223 224 2.110213 TGGAAAGCTTGTCGGCGT 59.890 55.556 6.85 0.00 37.29 5.68
224 225 2.556287 GTGGAAAGCTTGTCGGCG 59.444 61.111 0.00 0.00 37.29 6.46
244 245 2.173382 CGAAAAGCTTGTCGGCCG 59.827 61.111 27.97 22.12 33.62 6.13
278 279 3.338275 TATTCGCCCTTTGCCGGCT 62.338 57.895 29.70 5.21 44.73 5.52
302 303 1.073216 GTGGTGTCTGATGTCTCGCG 61.073 60.000 0.00 0.00 0.00 5.87
307 308 2.969628 CCTAGGTGGTGTCTGATGTC 57.030 55.000 0.00 0.00 0.00 3.06
334 335 0.392461 GGCAATACTCTGCGGACCAA 60.392 55.000 0.00 0.00 43.60 3.67
344 376 5.880054 TGCAAAAGTTAGAGGCAATACTC 57.120 39.130 0.00 0.00 37.77 2.59
348 380 4.941263 TCGTATGCAAAAGTTAGAGGCAAT 59.059 37.500 0.00 0.00 38.08 3.56
392 424 8.900983 TGATTGTGTCCATCGATTTTGATATA 57.099 30.769 0.00 0.00 0.00 0.86
407 439 5.122396 GGAACACTCTACATTGATTGTGTCC 59.878 44.000 0.00 0.00 39.48 4.02
409 441 5.869579 AGGAACACTCTACATTGATTGTGT 58.130 37.500 0.00 0.00 39.48 3.72
411 443 5.013079 TGGAGGAACACTCTACATTGATTGT 59.987 40.000 0.00 0.00 45.83 2.71
413 445 5.762179 TGGAGGAACACTCTACATTGATT 57.238 39.130 0.00 0.00 45.83 2.57
415 447 4.142160 CGATGGAGGAACACTCTACATTGA 60.142 45.833 0.00 0.00 45.83 2.57
416 448 4.115516 CGATGGAGGAACACTCTACATTG 58.884 47.826 0.00 0.00 45.83 2.82
418 450 2.695666 CCGATGGAGGAACACTCTACAT 59.304 50.000 0.00 0.00 45.83 2.29
421 453 2.656002 CTCCGATGGAGGAACACTCTA 58.344 52.381 4.89 0.00 45.43 2.43
438 477 6.318900 CCAATTATACCTCAAAGACAACCTCC 59.681 42.308 0.00 0.00 0.00 4.30
444 483 4.080807 TCGGCCAATTATACCTCAAAGACA 60.081 41.667 2.24 0.00 0.00 3.41
512 551 2.236395 CAACCGACCTCATCTTAAGGGT 59.764 50.000 1.85 1.49 38.29 4.34
515 554 2.280628 GCCAACCGACCTCATCTTAAG 58.719 52.381 0.00 0.00 0.00 1.85
531 570 1.173043 GATGTTTGGGTCATCGCCAA 58.827 50.000 0.00 0.00 33.60 4.52
560 599 4.481930 AAAGTTTTGCATCGTCGAATGA 57.518 36.364 0.00 0.00 0.00 2.57
590 629 7.795047 AGATGTCCTCAAATGAAAAGGTTTTT 58.205 30.769 0.00 0.00 0.00 1.94
610 649 7.077605 CACGATACAAAACACAATGAAGATGT 58.922 34.615 0.00 0.00 0.00 3.06
617 656 3.894920 TGGCACGATACAAAACACAATG 58.105 40.909 0.00 0.00 0.00 2.82
636 675 4.380444 CCTTATGTTGACACCCGAATTTGG 60.380 45.833 4.52 4.52 0.00 3.28
641 680 2.610976 CGTCCTTATGTTGACACCCGAA 60.611 50.000 0.00 0.00 0.00 4.30
655 694 1.270199 TGCGGCAGTTTAACGTCCTTA 60.270 47.619 0.00 0.00 0.00 2.69
674 713 5.050091 ACTCTGTTATCTTCAAGCACGTTTG 60.050 40.000 0.00 0.00 0.00 2.93
675 714 5.057149 ACTCTGTTATCTTCAAGCACGTTT 58.943 37.500 0.00 0.00 0.00 3.60
678 718 4.686091 TCAACTCTGTTATCTTCAAGCACG 59.314 41.667 0.00 0.00 0.00 5.34
713 753 9.793252 AAGTTATCAAAATGACATCAAGTATGC 57.207 29.630 0.00 0.00 39.39 3.14
727 1121 7.595819 TGGTGAAGGTTCAAGTTATCAAAAT 57.404 32.000 0.00 0.00 39.21 1.82
741 1135 5.490159 CCATTTTTATGCATGGTGAAGGTT 58.510 37.500 10.16 0.00 36.01 3.50
798 1202 1.811266 CGGAGGTGCATCCACTTCG 60.811 63.158 7.13 2.54 45.91 3.79
803 1207 2.058001 ATCGTCGGAGGTGCATCCA 61.058 57.895 7.13 0.00 39.53 3.41
917 1323 1.066143 GGAGAAAGCCCGATCAACAGA 60.066 52.381 0.00 0.00 0.00 3.41
948 1358 2.777114 TGTATGTGCTATCCATGGGTGT 59.223 45.455 13.02 0.92 0.00 4.16
956 1366 2.213499 GCCACTGTGTATGTGCTATCC 58.787 52.381 7.08 0.00 34.38 2.59
973 1388 2.727123 TGAACTGTTCCTTCTTGCCA 57.273 45.000 17.26 0.00 0.00 4.92
979 1394 5.411053 CCATCTTCTCTTGAACTGTTCCTTC 59.589 44.000 17.26 0.00 0.00 3.46
1086 1507 4.360405 GTGATGTTGGGGCCCGGT 62.360 66.667 19.83 2.90 0.00 5.28
1135 1556 2.280524 CGTGGTCTTGGCGTCCAA 60.281 61.111 10.28 10.28 41.69 3.53
1833 2254 1.269988 CGGAAGGAGTCGCATCATCAT 60.270 52.381 0.00 0.00 0.00 2.45
1834 2255 0.103026 CGGAAGGAGTCGCATCATCA 59.897 55.000 0.00 0.00 0.00 3.07
1835 2256 2.892305 CGGAAGGAGTCGCATCATC 58.108 57.895 0.00 0.00 0.00 2.92
1856 2277 5.739070 GTTAATTAATTAAGCTGGCCTGGCC 60.739 44.000 30.97 30.97 39.81 5.36
1857 2278 5.069119 AGTTAATTAATTAAGCTGGCCTGGC 59.931 40.000 18.76 11.05 33.31 4.85
1858 2279 6.715347 AGTTAATTAATTAAGCTGGCCTGG 57.285 37.500 18.76 1.66 33.31 4.45
1859 2280 8.000780 AGAAGTTAATTAATTAAGCTGGCCTG 57.999 34.615 18.76 4.26 33.31 4.85
1860 2281 8.595362 AAGAAGTTAATTAATTAAGCTGGCCT 57.405 30.769 18.76 9.87 33.31 5.19
1886 2311 1.002900 CTTGTTTTCGAGCCAAGCGAA 60.003 47.619 7.55 0.00 44.93 4.70
1887 2312 0.586319 CTTGTTTTCGAGCCAAGCGA 59.414 50.000 7.55 0.00 35.76 4.93
1888 2313 0.586319 TCTTGTTTTCGAGCCAAGCG 59.414 50.000 13.07 0.00 36.41 4.68
1889 2314 2.774439 TTCTTGTTTTCGAGCCAAGC 57.226 45.000 13.07 0.00 36.41 4.01
1890 2315 5.629435 GGTTTATTCTTGTTTTCGAGCCAAG 59.371 40.000 12.14 12.14 37.51 3.61
1903 2328 1.539388 TGTGCGGCTGGTTTATTCTTG 59.461 47.619 0.00 0.00 0.00 3.02
1965 2396 4.993705 ACTCATGGTCTACCCTCAAAAA 57.006 40.909 0.00 0.00 34.29 1.94
1966 2397 6.901300 AGTATACTCATGGTCTACCCTCAAAA 59.099 38.462 0.00 0.00 30.67 2.44
1967 2398 6.441222 AGTATACTCATGGTCTACCCTCAAA 58.559 40.000 0.00 0.00 30.67 2.69
1968 2399 6.027025 AGTATACTCATGGTCTACCCTCAA 57.973 41.667 0.00 0.00 30.67 3.02
1969 2400 5.664815 AGTATACTCATGGTCTACCCTCA 57.335 43.478 0.00 0.00 30.67 3.86
1970 2401 8.653036 AATAAGTATACTCATGGTCTACCCTC 57.347 38.462 5.70 0.00 30.67 4.30
1971 2402 8.232412 TGAATAAGTATACTCATGGTCTACCCT 58.768 37.037 5.70 0.00 30.67 4.34
1972 2403 8.418597 TGAATAAGTATACTCATGGTCTACCC 57.581 38.462 5.70 0.00 30.67 3.69
2015 2446 1.174783 TAGGAGTTGTCCACGCTCTC 58.825 55.000 0.00 0.00 46.80 3.20
2051 2482 1.665679 AGAACTTGTTGCACGACACAG 59.334 47.619 0.00 0.00 0.00 3.66
2057 2488 1.069906 GCACCTAGAACTTGTTGCACG 60.070 52.381 0.00 0.00 0.00 5.34
2077 2508 6.109359 AGACTATTAGCTAGTTGCAAGGTTG 58.891 40.000 0.00 0.00 45.94 3.77
2124 2555 9.286946 ACGAAAATTTTAAACAAACACATCGTA 57.713 25.926 2.75 0.00 35.77 3.43
2153 2584 1.680735 TGGATGAAAATACGCATGGGC 59.319 47.619 10.10 0.00 0.00 5.36
2228 2664 1.144969 ATAACAACAGTGTGGCGTCG 58.855 50.000 0.00 0.00 38.27 5.12
2241 2677 3.042682 TCTATCCGAGGCCCAATAACAA 58.957 45.455 0.00 0.00 0.00 2.83
2248 2684 0.679505 CGATTTCTATCCGAGGCCCA 59.320 55.000 0.00 0.00 0.00 5.36
2261 2697 4.636206 AGGGACAGCAGAATAAACGATTTC 59.364 41.667 0.00 0.00 0.00 2.17
2265 2701 3.007506 TGAAGGGACAGCAGAATAAACGA 59.992 43.478 0.00 0.00 0.00 3.85
2266 2702 3.334691 TGAAGGGACAGCAGAATAAACG 58.665 45.455 0.00 0.00 0.00 3.60
2275 2711 0.247460 CGACAGATGAAGGGACAGCA 59.753 55.000 0.00 0.00 0.00 4.41
2276 2712 0.247736 ACGACAGATGAAGGGACAGC 59.752 55.000 0.00 0.00 0.00 4.40
2277 2713 2.611518 GAACGACAGATGAAGGGACAG 58.388 52.381 0.00 0.00 0.00 3.51
2278 2714 1.067846 CGAACGACAGATGAAGGGACA 60.068 52.381 0.00 0.00 0.00 4.02
2279 2715 1.630148 CGAACGACAGATGAAGGGAC 58.370 55.000 0.00 0.00 0.00 4.46
2280 2716 0.530744 CCGAACGACAGATGAAGGGA 59.469 55.000 0.00 0.00 0.00 4.20
2295 2731 1.238439 CCTTTTTGCTGCTCTCCGAA 58.762 50.000 0.00 0.00 0.00 4.30
2298 2734 4.460731 AGAATAACCTTTTTGCTGCTCTCC 59.539 41.667 0.00 0.00 0.00 3.71
2299 2735 5.635417 AGAATAACCTTTTTGCTGCTCTC 57.365 39.130 0.00 0.00 0.00 3.20
2323 2759 3.248266 GTGAGTTTCAATCCTTGCATGC 58.752 45.455 11.82 11.82 0.00 4.06
2325 2761 3.411446 TCGTGAGTTTCAATCCTTGCAT 58.589 40.909 0.00 0.00 0.00 3.96
2336 2772 4.051922 ACACTGATGAGTTCGTGAGTTTC 58.948 43.478 0.00 0.00 34.81 2.78
2343 2779 1.884579 ACGGTACACTGATGAGTTCGT 59.115 47.619 0.00 0.00 0.00 3.85
2412 2848 6.070710 GGTTGGCCTATTTTAATTGGGTAACA 60.071 38.462 3.32 0.00 39.74 2.41
2413 2849 6.155565 AGGTTGGCCTATTTTAATTGGGTAAC 59.844 38.462 3.32 0.00 44.90 2.50
2495 2931 0.394565 ACAGACTTGCTCAGGTGGTC 59.605 55.000 0.00 0.00 0.00 4.02
2557 3015 4.039973 CCCGTATTAGAATAGGCAAGGTGA 59.960 45.833 0.00 0.00 0.00 4.02
2586 3044 7.582828 GCCTCACCCTCTATTTAACTCCTTTAA 60.583 40.741 0.00 0.00 0.00 1.52
2588 3046 5.339282 GCCTCACCCTCTATTTAACTCCTTT 60.339 44.000 0.00 0.00 0.00 3.11
2589 3047 4.164413 GCCTCACCCTCTATTTAACTCCTT 59.836 45.833 0.00 0.00 0.00 3.36
2590 3048 3.712218 GCCTCACCCTCTATTTAACTCCT 59.288 47.826 0.00 0.00 0.00 3.69
2591 3049 3.492829 CGCCTCACCCTCTATTTAACTCC 60.493 52.174 0.00 0.00 0.00 3.85
2592 3050 3.383825 TCGCCTCACCCTCTATTTAACTC 59.616 47.826 0.00 0.00 0.00 3.01
2593 3051 3.371965 TCGCCTCACCCTCTATTTAACT 58.628 45.455 0.00 0.00 0.00 2.24
2594 3052 3.814005 TCGCCTCACCCTCTATTTAAC 57.186 47.619 0.00 0.00 0.00 2.01
2595 3053 3.964688 TCATCGCCTCACCCTCTATTTAA 59.035 43.478 0.00 0.00 0.00 1.52
2613 3290 7.096551 GCTCTCAAGGGATAAGTTAGATCATC 58.903 42.308 0.00 0.00 0.00 2.92
2623 3300 3.539604 CTTGTGGCTCTCAAGGGATAAG 58.460 50.000 8.33 0.00 38.70 1.73
2657 3334 6.438741 TCATTACACAATCTTTAATTGGGCCA 59.561 34.615 0.00 0.00 35.93 5.36
2685 3378 6.037098 TGGTTAATTTCTTTCAACGGTGTTG 58.963 36.000 0.00 3.33 0.00 3.33
2697 3390 7.202526 CCGATGTAATGCATGGTTAATTTCTT 58.797 34.615 0.00 0.00 38.06 2.52
2737 3430 3.702045 AGTAGTCTGATGCCTAGTGGTTC 59.298 47.826 0.00 0.00 35.27 3.62
2740 3433 3.291584 TCAGTAGTCTGATGCCTAGTGG 58.708 50.000 8.09 0.00 44.58 4.00
2751 3444 1.678627 ACGCTAGGCATCAGTAGTCTG 59.321 52.381 0.00 0.00 42.54 3.51
2752 3445 2.060050 ACGCTAGGCATCAGTAGTCT 57.940 50.000 0.00 0.00 0.00 3.24
2753 3446 2.544069 GGAACGCTAGGCATCAGTAGTC 60.544 54.545 0.00 0.00 0.00 2.59
2755 3448 1.409064 TGGAACGCTAGGCATCAGTAG 59.591 52.381 0.00 0.00 0.00 2.57
2756 3449 1.480789 TGGAACGCTAGGCATCAGTA 58.519 50.000 0.00 0.00 0.00 2.74
2758 3451 1.202568 TGATGGAACGCTAGGCATCAG 60.203 52.381 0.00 0.00 0.00 2.90
2759 3452 0.829990 TGATGGAACGCTAGGCATCA 59.170 50.000 0.00 0.00 0.00 3.07
2760 3453 1.069204 TCTGATGGAACGCTAGGCATC 59.931 52.381 0.00 0.00 0.00 3.91
2762 3455 0.175760 GTCTGATGGAACGCTAGGCA 59.824 55.000 0.00 0.00 0.00 4.75
2763 3456 0.530870 GGTCTGATGGAACGCTAGGC 60.531 60.000 0.00 0.00 0.00 3.93
2764 3457 0.824109 TGGTCTGATGGAACGCTAGG 59.176 55.000 0.00 0.00 33.55 3.02
2765 3458 1.478510 ACTGGTCTGATGGAACGCTAG 59.521 52.381 0.00 0.00 33.55 3.42
2766 3459 1.204704 CACTGGTCTGATGGAACGCTA 59.795 52.381 0.00 0.00 33.55 4.26
2767 3460 0.036952 CACTGGTCTGATGGAACGCT 60.037 55.000 0.00 0.00 33.55 5.07
2768 3461 1.639298 GCACTGGTCTGATGGAACGC 61.639 60.000 0.00 0.00 33.55 4.84
2770 3463 0.320771 ACGCACTGGTCTGATGGAAC 60.321 55.000 0.00 0.00 0.00 3.62
2771 3464 0.320683 CACGCACTGGTCTGATGGAA 60.321 55.000 0.00 0.00 0.00 3.53
2772 3465 1.293179 CACGCACTGGTCTGATGGA 59.707 57.895 0.00 0.00 0.00 3.41
2773 3466 1.742880 CCACGCACTGGTCTGATGG 60.743 63.158 0.00 0.00 34.90 3.51
2774 3467 2.393768 GCCACGCACTGGTCTGATG 61.394 63.158 0.00 0.00 42.99 3.07
2775 3468 2.046892 GCCACGCACTGGTCTGAT 60.047 61.111 0.00 0.00 42.99 2.90
2776 3469 4.314440 GGCCACGCACTGGTCTGA 62.314 66.667 0.00 0.00 42.12 3.27
2784 3477 0.874607 CTAATCCTACGGCCACGCAC 60.875 60.000 2.24 0.00 46.04 5.34
2785 3478 1.324740 ACTAATCCTACGGCCACGCA 61.325 55.000 2.24 0.00 46.04 5.24
2786 3479 0.874607 CACTAATCCTACGGCCACGC 60.875 60.000 2.24 0.00 46.04 5.34
2788 3481 0.532196 GCCACTAATCCTACGGCCAC 60.532 60.000 2.24 0.00 36.73 5.01
2789 3482 0.689745 AGCCACTAATCCTACGGCCA 60.690 55.000 2.24 0.00 44.06 5.36
2790 3483 1.335145 TAGCCACTAATCCTACGGCC 58.665 55.000 0.00 0.00 44.06 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.