Multiple sequence alignment - TraesCS5A01G530300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G530300 chr5A 100.000 2396 0 0 1 2396 689176416 689178811 0.000000e+00 4425.0
1 TraesCS5A01G530300 chr5A 96.833 442 4 8 1 432 665599007 665598566 0.000000e+00 730.0
2 TraesCS5A01G530300 chr5A 92.534 509 36 2 1889 2396 108535519 108536026 0.000000e+00 728.0
3 TraesCS5A01G530300 chr5A 90.909 550 34 10 794 1329 689185562 689186109 0.000000e+00 725.0
4 TraesCS5A01G530300 chrUn 100.000 905 0 0 1327 2231 64950957 64950053 0.000000e+00 1672.0
5 TraesCS5A01G530300 chrUn 90.909 550 34 10 794 1329 394590895 394590348 0.000000e+00 725.0
6 TraesCS5A01G530300 chr4B 89.492 885 49 12 447 1329 651147158 651148000 0.000000e+00 1079.0
7 TraesCS5A01G530300 chr4B 82.692 468 65 8 869 1329 582751752 582751294 3.710000e-108 401.0
8 TraesCS5A01G530300 chr4D 95.192 624 21 2 712 1329 504511356 504511976 0.000000e+00 977.0
9 TraesCS5A01G530300 chr4D 94.600 537 20 2 799 1329 504561916 504562449 0.000000e+00 822.0
10 TraesCS5A01G530300 chr4D 92.534 509 37 1 1889 2396 466721278 466721786 0.000000e+00 728.0
11 TraesCS5A01G530300 chr4D 82.151 465 73 7 869 1329 465757712 465757254 8.030000e-105 390.0
12 TraesCS5A01G530300 chr4D 85.484 248 13 7 447 685 504510434 504510667 1.110000e-58 237.0
13 TraesCS5A01G530300 chr6B 99.309 434 3 0 1 434 566802226 566802659 0.000000e+00 785.0
14 TraesCS5A01G530300 chr6B 98.771 407 5 0 1 407 637415239 637415645 0.000000e+00 725.0
15 TraesCS5A01G530300 chr3A 94.048 504 29 1 1889 2391 683631176 683630673 0.000000e+00 763.0
16 TraesCS5A01G530300 chr2A 93.517 509 31 2 1889 2396 53251070 53251577 0.000000e+00 756.0
17 TraesCS5A01G530300 chr2A 92.702 507 36 1 1889 2394 633097900 633097394 0.000000e+00 730.0
18 TraesCS5A01G530300 chr6A 98.113 424 6 2 1 423 591195530 591195108 0.000000e+00 737.0
19 TraesCS5A01G530300 chr2D 92.731 509 36 1 1889 2396 491406497 491407005 0.000000e+00 734.0
20 TraesCS5A01G530300 chr2D 92.534 509 37 1 1889 2396 423503586 423504094 0.000000e+00 728.0
21 TraesCS5A01G530300 chr7A 99.020 408 4 0 1 408 494189363 494188956 0.000000e+00 732.0
22 TraesCS5A01G530300 chr7D 92.534 509 37 1 1889 2396 431633881 431634389 0.000000e+00 728.0
23 TraesCS5A01G530300 chr7D 89.691 97 8 2 313 408 336233818 336233723 3.230000e-24 122.0
24 TraesCS5A01G530300 chr2B 99.194 372 3 0 1 372 13198730 13198359 0.000000e+00 671.0
25 TraesCS5A01G530300 chr3B 99.446 361 2 0 1 361 15118796 15119156 0.000000e+00 656.0
26 TraesCS5A01G530300 chr1D 89.458 332 30 3 1460 1786 90259636 90259305 4.770000e-112 414.0
27 TraesCS5A01G530300 chr1D 88.835 206 20 2 1327 1529 90259845 90259640 1.420000e-62 250.0
28 TraesCS5A01G530300 chr4A 81.935 465 68 9 869 1329 4822867 4823319 1.740000e-101 379.0
29 TraesCS5A01G530300 chr4A 100.000 28 0 0 1821 1848 699567272 699567299 4.000000e-03 52.8
30 TraesCS5A01G530300 chr7B 87.500 104 6 6 313 411 608182746 608182847 1.950000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G530300 chr5A 689176416 689178811 2395 False 4425 4425 100.0000 1 2396 1 chr5A.!!$F2 2395
1 TraesCS5A01G530300 chr5A 108535519 108536026 507 False 728 728 92.5340 1889 2396 1 chr5A.!!$F1 507
2 TraesCS5A01G530300 chr5A 689185562 689186109 547 False 725 725 90.9090 794 1329 1 chr5A.!!$F3 535
3 TraesCS5A01G530300 chrUn 64950053 64950957 904 True 1672 1672 100.0000 1327 2231 1 chrUn.!!$R1 904
4 TraesCS5A01G530300 chrUn 394590348 394590895 547 True 725 725 90.9090 794 1329 1 chrUn.!!$R2 535
5 TraesCS5A01G530300 chr4B 651147158 651148000 842 False 1079 1079 89.4920 447 1329 1 chr4B.!!$F1 882
6 TraesCS5A01G530300 chr4D 504561916 504562449 533 False 822 822 94.6000 799 1329 1 chr4D.!!$F2 530
7 TraesCS5A01G530300 chr4D 466721278 466721786 508 False 728 728 92.5340 1889 2396 1 chr4D.!!$F1 507
8 TraesCS5A01G530300 chr4D 504510434 504511976 1542 False 607 977 90.3380 447 1329 2 chr4D.!!$F3 882
9 TraesCS5A01G530300 chr3A 683630673 683631176 503 True 763 763 94.0480 1889 2391 1 chr3A.!!$R1 502
10 TraesCS5A01G530300 chr2A 53251070 53251577 507 False 756 756 93.5170 1889 2396 1 chr2A.!!$F1 507
11 TraesCS5A01G530300 chr2A 633097394 633097900 506 True 730 730 92.7020 1889 2394 1 chr2A.!!$R1 505
12 TraesCS5A01G530300 chr2D 491406497 491407005 508 False 734 734 92.7310 1889 2396 1 chr2D.!!$F2 507
13 TraesCS5A01G530300 chr2D 423503586 423504094 508 False 728 728 92.5340 1889 2396 1 chr2D.!!$F1 507
14 TraesCS5A01G530300 chr7D 431633881 431634389 508 False 728 728 92.5340 1889 2396 1 chr7D.!!$F1 507
15 TraesCS5A01G530300 chr1D 90259305 90259845 540 True 332 414 89.1465 1327 1786 2 chr1D.!!$R1 459

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.034616 GATCCCTCCCTCATCTTGCG 59.965 60.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2295 3092 6.064717 GTGCCACCTAATGATCCTTTAGAAT 58.935 40.0 12.01 1.06 0.0 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.899239 CACCAGCCGCGAGATCCC 62.899 72.222 8.23 0.00 0.00 3.85
37 38 4.292178 CCAGCCGCGAGATCCCTC 62.292 72.222 8.23 0.00 36.08 4.30
38 39 4.292178 CAGCCGCGAGATCCCTCC 62.292 72.222 8.23 0.00 36.04 4.30
41 42 3.299190 CCGCGAGATCCCTCCCTC 61.299 72.222 8.23 0.00 36.04 4.30
42 43 2.519541 CGCGAGATCCCTCCCTCA 60.520 66.667 0.00 0.00 36.04 3.86
43 44 1.905843 CGCGAGATCCCTCCCTCAT 60.906 63.158 0.00 0.00 36.04 2.90
44 45 1.872197 CGCGAGATCCCTCCCTCATC 61.872 65.000 0.00 0.00 36.04 2.92
45 46 0.541764 GCGAGATCCCTCCCTCATCT 60.542 60.000 0.00 0.00 36.04 2.90
46 47 2.008242 CGAGATCCCTCCCTCATCTT 57.992 55.000 0.00 0.00 36.04 2.40
47 48 1.617850 CGAGATCCCTCCCTCATCTTG 59.382 57.143 0.00 0.00 36.04 3.02
48 49 1.347378 GAGATCCCTCCCTCATCTTGC 59.653 57.143 0.00 0.00 33.30 4.01
49 50 0.034616 GATCCCTCCCTCATCTTGCG 59.965 60.000 0.00 0.00 0.00 4.85
50 51 0.399091 ATCCCTCCCTCATCTTGCGA 60.399 55.000 0.00 0.00 0.00 5.10
51 52 1.144936 CCCTCCCTCATCTTGCGAC 59.855 63.158 0.00 0.00 0.00 5.19
52 53 1.617018 CCCTCCCTCATCTTGCGACA 61.617 60.000 0.00 0.00 0.00 4.35
53 54 0.460987 CCTCCCTCATCTTGCGACAC 60.461 60.000 0.00 0.00 0.00 3.67
54 55 0.534412 CTCCCTCATCTTGCGACACT 59.466 55.000 0.00 0.00 0.00 3.55
55 56 0.976641 TCCCTCATCTTGCGACACTT 59.023 50.000 0.00 0.00 0.00 3.16
56 57 1.066858 TCCCTCATCTTGCGACACTTC 60.067 52.381 0.00 0.00 0.00 3.01
57 58 1.066573 CCCTCATCTTGCGACACTTCT 60.067 52.381 0.00 0.00 0.00 2.85
58 59 2.266554 CCTCATCTTGCGACACTTCTC 58.733 52.381 0.00 0.00 0.00 2.87
59 60 2.266554 CTCATCTTGCGACACTTCTCC 58.733 52.381 0.00 0.00 0.00 3.71
60 61 1.895798 TCATCTTGCGACACTTCTCCT 59.104 47.619 0.00 0.00 0.00 3.69
61 62 2.300152 TCATCTTGCGACACTTCTCCTT 59.700 45.455 0.00 0.00 0.00 3.36
62 63 2.440539 TCTTGCGACACTTCTCCTTC 57.559 50.000 0.00 0.00 0.00 3.46
63 64 1.964223 TCTTGCGACACTTCTCCTTCT 59.036 47.619 0.00 0.00 0.00 2.85
64 65 3.154710 TCTTGCGACACTTCTCCTTCTA 58.845 45.455 0.00 0.00 0.00 2.10
65 66 3.764434 TCTTGCGACACTTCTCCTTCTAT 59.236 43.478 0.00 0.00 0.00 1.98
66 67 3.510388 TGCGACACTTCTCCTTCTATG 57.490 47.619 0.00 0.00 0.00 2.23
67 68 2.197577 GCGACACTTCTCCTTCTATGC 58.802 52.381 0.00 0.00 0.00 3.14
68 69 2.815478 CGACACTTCTCCTTCTATGCC 58.185 52.381 0.00 0.00 0.00 4.40
69 70 2.428890 CGACACTTCTCCTTCTATGCCT 59.571 50.000 0.00 0.00 0.00 4.75
70 71 3.118956 CGACACTTCTCCTTCTATGCCTT 60.119 47.826 0.00 0.00 0.00 4.35
71 72 4.621747 CGACACTTCTCCTTCTATGCCTTT 60.622 45.833 0.00 0.00 0.00 3.11
72 73 4.837972 ACACTTCTCCTTCTATGCCTTTC 58.162 43.478 0.00 0.00 0.00 2.62
73 74 4.534103 ACACTTCTCCTTCTATGCCTTTCT 59.466 41.667 0.00 0.00 0.00 2.52
74 75 5.115480 CACTTCTCCTTCTATGCCTTTCTC 58.885 45.833 0.00 0.00 0.00 2.87
75 76 5.029474 ACTTCTCCTTCTATGCCTTTCTCT 58.971 41.667 0.00 0.00 0.00 3.10
76 77 5.128663 ACTTCTCCTTCTATGCCTTTCTCTC 59.871 44.000 0.00 0.00 0.00 3.20
77 78 4.877773 TCTCCTTCTATGCCTTTCTCTCT 58.122 43.478 0.00 0.00 0.00 3.10
78 79 5.276440 TCTCCTTCTATGCCTTTCTCTCTT 58.724 41.667 0.00 0.00 0.00 2.85
79 80 5.723887 TCTCCTTCTATGCCTTTCTCTCTTT 59.276 40.000 0.00 0.00 0.00 2.52
80 81 5.983540 TCCTTCTATGCCTTTCTCTCTTTC 58.016 41.667 0.00 0.00 0.00 2.62
81 82 5.104735 TCCTTCTATGCCTTTCTCTCTTTCC 60.105 44.000 0.00 0.00 0.00 3.13
82 83 5.104569 CCTTCTATGCCTTTCTCTCTTTCCT 60.105 44.000 0.00 0.00 0.00 3.36
83 84 5.606348 TCTATGCCTTTCTCTCTTTCCTC 57.394 43.478 0.00 0.00 0.00 3.71
84 85 5.276440 TCTATGCCTTTCTCTCTTTCCTCT 58.724 41.667 0.00 0.00 0.00 3.69
85 86 3.971245 TGCCTTTCTCTCTTTCCTCTC 57.029 47.619 0.00 0.00 0.00 3.20
86 87 2.569404 TGCCTTTCTCTCTTTCCTCTCC 59.431 50.000 0.00 0.00 0.00 3.71
87 88 2.093181 GCCTTTCTCTCTTTCCTCTCCC 60.093 54.545 0.00 0.00 0.00 4.30
88 89 2.503765 CCTTTCTCTCTTTCCTCTCCCC 59.496 54.545 0.00 0.00 0.00 4.81
89 90 2.255770 TTCTCTCTTTCCTCTCCCCC 57.744 55.000 0.00 0.00 0.00 5.40
90 91 1.398799 TCTCTCTTTCCTCTCCCCCT 58.601 55.000 0.00 0.00 0.00 4.79
91 92 1.289530 TCTCTCTTTCCTCTCCCCCTC 59.710 57.143 0.00 0.00 0.00 4.30
92 93 1.007721 CTCTCTTTCCTCTCCCCCTCA 59.992 57.143 0.00 0.00 0.00 3.86
93 94 1.199615 CTCTTTCCTCTCCCCCTCAC 58.800 60.000 0.00 0.00 0.00 3.51
94 95 0.491823 TCTTTCCTCTCCCCCTCACA 59.508 55.000 0.00 0.00 0.00 3.58
95 96 0.615850 CTTTCCTCTCCCCCTCACAC 59.384 60.000 0.00 0.00 0.00 3.82
96 97 0.840722 TTTCCTCTCCCCCTCACACC 60.841 60.000 0.00 0.00 0.00 4.16
97 98 2.689034 CCTCTCCCCCTCACACCC 60.689 72.222 0.00 0.00 0.00 4.61
98 99 2.452114 CTCTCCCCCTCACACCCT 59.548 66.667 0.00 0.00 0.00 4.34
99 100 1.992277 CTCTCCCCCTCACACCCTG 60.992 68.421 0.00 0.00 0.00 4.45
100 101 2.203998 CTCCCCCTCACACCCTGT 60.204 66.667 0.00 0.00 0.00 4.00
101 102 2.203938 TCCCCCTCACACCCTGTC 60.204 66.667 0.00 0.00 0.00 3.51
102 103 2.203998 CCCCCTCACACCCTGTCT 60.204 66.667 0.00 0.00 0.00 3.41
103 104 2.294078 CCCCCTCACACCCTGTCTC 61.294 68.421 0.00 0.00 0.00 3.36
104 105 1.229336 CCCCTCACACCCTGTCTCT 60.229 63.158 0.00 0.00 0.00 3.10
105 106 1.261238 CCCCTCACACCCTGTCTCTC 61.261 65.000 0.00 0.00 0.00 3.20
106 107 0.252012 CCCTCACACCCTGTCTCTCT 60.252 60.000 0.00 0.00 0.00 3.10
107 108 1.181786 CCTCACACCCTGTCTCTCTC 58.818 60.000 0.00 0.00 0.00 3.20
108 109 1.272425 CCTCACACCCTGTCTCTCTCT 60.272 57.143 0.00 0.00 0.00 3.10
109 110 2.524306 CTCACACCCTGTCTCTCTCTT 58.476 52.381 0.00 0.00 0.00 2.85
110 111 2.896685 CTCACACCCTGTCTCTCTCTTT 59.103 50.000 0.00 0.00 0.00 2.52
111 112 4.082845 CTCACACCCTGTCTCTCTCTTTA 58.917 47.826 0.00 0.00 0.00 1.85
112 113 4.480115 TCACACCCTGTCTCTCTCTTTAA 58.520 43.478 0.00 0.00 0.00 1.52
113 114 4.281182 TCACACCCTGTCTCTCTCTTTAAC 59.719 45.833 0.00 0.00 0.00 2.01
114 115 4.282195 CACACCCTGTCTCTCTCTTTAACT 59.718 45.833 0.00 0.00 0.00 2.24
115 116 4.282195 ACACCCTGTCTCTCTCTTTAACTG 59.718 45.833 0.00 0.00 0.00 3.16
116 117 3.835395 ACCCTGTCTCTCTCTTTAACTGG 59.165 47.826 0.00 0.00 0.00 4.00
117 118 4.090090 CCCTGTCTCTCTCTTTAACTGGA 58.910 47.826 0.00 0.00 32.47 3.86
118 119 4.714308 CCCTGTCTCTCTCTTTAACTGGAT 59.286 45.833 0.00 0.00 32.47 3.41
119 120 5.395103 CCCTGTCTCTCTCTTTAACTGGATG 60.395 48.000 0.00 0.00 32.47 3.51
120 121 5.420421 CCTGTCTCTCTCTTTAACTGGATGA 59.580 44.000 0.00 0.00 32.47 2.92
121 122 6.405731 CCTGTCTCTCTCTTTAACTGGATGAG 60.406 46.154 0.00 0.00 32.47 2.90
122 123 5.105554 TGTCTCTCTCTTTAACTGGATGAGC 60.106 44.000 0.00 0.00 0.00 4.26
123 124 5.019470 TCTCTCTCTTTAACTGGATGAGCA 58.981 41.667 0.00 0.00 0.00 4.26
124 125 5.481824 TCTCTCTCTTTAACTGGATGAGCAA 59.518 40.000 0.00 0.00 0.00 3.91
125 126 5.728471 TCTCTCTTTAACTGGATGAGCAAG 58.272 41.667 0.00 0.00 0.00 4.01
126 127 5.481824 TCTCTCTTTAACTGGATGAGCAAGA 59.518 40.000 0.00 0.00 0.00 3.02
127 128 5.482908 TCTCTTTAACTGGATGAGCAAGAC 58.517 41.667 0.00 0.00 0.00 3.01
128 129 5.012046 TCTCTTTAACTGGATGAGCAAGACA 59.988 40.000 0.00 0.00 0.00 3.41
129 130 5.809001 TCTTTAACTGGATGAGCAAGACAT 58.191 37.500 0.00 0.00 0.00 3.06
130 131 5.877012 TCTTTAACTGGATGAGCAAGACATC 59.123 40.000 0.00 0.00 42.07 3.06
131 132 2.306341 ACTGGATGAGCAAGACATCG 57.694 50.000 0.00 0.00 43.24 3.84
132 133 0.935898 CTGGATGAGCAAGACATCGC 59.064 55.000 0.00 0.00 43.24 4.58
133 134 0.462581 TGGATGAGCAAGACATCGCC 60.463 55.000 0.00 0.00 43.24 5.54
134 135 1.493950 GGATGAGCAAGACATCGCCG 61.494 60.000 0.00 0.00 43.24 6.46
135 136 2.098842 GATGAGCAAGACATCGCCGC 62.099 60.000 0.00 0.00 35.55 6.53
136 137 3.567797 GAGCAAGACATCGCCGCC 61.568 66.667 0.00 0.00 0.00 6.13
200 201 4.208686 GGATCCGCGCGTCTTCCT 62.209 66.667 29.95 5.86 0.00 3.36
201 202 2.655685 GATCCGCGCGTCTTCCTC 60.656 66.667 29.95 11.45 0.00 3.71
202 203 4.554363 ATCCGCGCGTCTTCCTCG 62.554 66.667 29.95 10.76 0.00 4.63
209 210 2.876645 CGTCTTCCTCGCGCTGTC 60.877 66.667 5.56 0.00 0.00 3.51
210 211 2.876645 GTCTTCCTCGCGCTGTCG 60.877 66.667 5.56 0.00 39.07 4.35
211 212 3.053896 TCTTCCTCGCGCTGTCGA 61.054 61.111 5.56 0.00 38.10 4.20
212 213 2.126463 CTTCCTCGCGCTGTCGAA 60.126 61.111 5.56 0.74 38.08 3.71
213 214 2.430244 TTCCTCGCGCTGTCGAAC 60.430 61.111 5.56 0.00 38.08 3.95
214 215 4.753877 TCCTCGCGCTGTCGAACG 62.754 66.667 5.56 0.00 38.08 3.95
221 222 3.762231 CGCTGTCGAACGCTTTATC 57.238 52.632 5.76 0.00 38.10 1.75
222 223 0.989164 CGCTGTCGAACGCTTTATCA 59.011 50.000 5.76 0.00 38.10 2.15
223 224 1.266404 CGCTGTCGAACGCTTTATCAC 60.266 52.381 5.76 0.00 38.10 3.06
224 225 1.993370 GCTGTCGAACGCTTTATCACT 59.007 47.619 0.00 0.00 0.00 3.41
225 226 2.412089 GCTGTCGAACGCTTTATCACTT 59.588 45.455 0.00 0.00 0.00 3.16
226 227 3.120649 GCTGTCGAACGCTTTATCACTTT 60.121 43.478 0.00 0.00 0.00 2.66
227 228 4.383774 TGTCGAACGCTTTATCACTTTG 57.616 40.909 0.00 0.00 0.00 2.77
228 229 4.052608 TGTCGAACGCTTTATCACTTTGA 58.947 39.130 0.00 0.00 0.00 2.69
229 230 4.508492 TGTCGAACGCTTTATCACTTTGAA 59.492 37.500 0.00 0.00 0.00 2.69
230 231 5.006844 TGTCGAACGCTTTATCACTTTGAAA 59.993 36.000 0.00 0.00 0.00 2.69
231 232 5.560378 GTCGAACGCTTTATCACTTTGAAAG 59.440 40.000 2.89 2.89 34.06 2.62
232 233 4.846137 CGAACGCTTTATCACTTTGAAAGG 59.154 41.667 10.02 0.00 32.03 3.11
233 234 4.766404 ACGCTTTATCACTTTGAAAGGG 57.234 40.909 10.02 5.20 44.36 3.95
234 235 3.057526 ACGCTTTATCACTTTGAAAGGGC 60.058 43.478 10.02 1.70 43.28 5.19
235 236 3.673323 CGCTTTATCACTTTGAAAGGGCC 60.673 47.826 10.02 0.00 36.65 5.80
236 237 3.673323 GCTTTATCACTTTGAAAGGGCCG 60.673 47.826 10.02 0.00 32.03 6.13
237 238 1.459450 TATCACTTTGAAAGGGCCGC 58.541 50.000 10.02 0.00 0.00 6.53
238 239 1.586154 ATCACTTTGAAAGGGCCGCG 61.586 55.000 10.02 0.00 0.00 6.46
239 240 2.983592 ACTTTGAAAGGGCCGCGG 60.984 61.111 24.05 24.05 0.00 6.46
240 241 3.747976 CTTTGAAAGGGCCGCGGG 61.748 66.667 29.38 8.95 0.00 6.13
241 242 4.589675 TTTGAAAGGGCCGCGGGT 62.590 61.111 29.38 0.00 0.00 5.28
242 243 4.589675 TTGAAAGGGCCGCGGGTT 62.590 61.111 29.38 0.00 0.00 4.11
245 246 4.589675 AAAGGGCCGCGGGTTCAA 62.590 61.111 29.38 0.00 0.00 2.69
246 247 3.879180 AAAGGGCCGCGGGTTCAAT 62.879 57.895 29.38 0.00 0.00 2.57
247 248 2.487274 AAAGGGCCGCGGGTTCAATA 62.487 55.000 29.38 0.00 0.00 1.90
248 249 3.206957 GGGCCGCGGGTTCAATAC 61.207 66.667 29.38 6.97 0.00 1.89
249 250 2.437002 GGCCGCGGGTTCAATACA 60.437 61.111 29.38 0.00 0.00 2.29
250 251 2.469516 GGCCGCGGGTTCAATACAG 61.470 63.158 29.38 0.00 0.00 2.74
251 252 2.469516 GCCGCGGGTTCAATACAGG 61.470 63.158 29.38 0.00 0.00 4.00
252 253 1.219664 CCGCGGGTTCAATACAGGA 59.780 57.895 20.10 0.00 0.00 3.86
253 254 0.391927 CCGCGGGTTCAATACAGGAA 60.392 55.000 20.10 0.00 0.00 3.36
254 255 1.444836 CGCGGGTTCAATACAGGAAA 58.555 50.000 0.00 0.00 0.00 3.13
255 256 1.129811 CGCGGGTTCAATACAGGAAAC 59.870 52.381 0.00 0.00 0.00 2.78
256 257 2.433436 GCGGGTTCAATACAGGAAACT 58.567 47.619 0.00 0.00 46.44 2.66
257 258 3.602483 GCGGGTTCAATACAGGAAACTA 58.398 45.455 0.00 0.00 40.21 2.24
258 259 3.373130 GCGGGTTCAATACAGGAAACTAC 59.627 47.826 0.00 0.00 40.21 2.73
259 260 4.571919 CGGGTTCAATACAGGAAACTACA 58.428 43.478 0.00 0.00 40.21 2.74
260 261 4.630069 CGGGTTCAATACAGGAAACTACAG 59.370 45.833 0.00 0.00 40.21 2.74
261 262 4.941873 GGGTTCAATACAGGAAACTACAGG 59.058 45.833 0.00 0.00 40.21 4.00
262 263 4.941873 GGTTCAATACAGGAAACTACAGGG 59.058 45.833 0.00 0.00 40.21 4.45
263 264 5.514310 GGTTCAATACAGGAAACTACAGGGT 60.514 44.000 0.00 0.00 40.21 4.34
264 265 5.836024 TCAATACAGGAAACTACAGGGTT 57.164 39.130 0.00 0.00 40.21 4.11
265 266 6.195600 TCAATACAGGAAACTACAGGGTTT 57.804 37.500 0.00 0.00 40.21 3.27
272 273 4.911514 GAAACTACAGGGTTTCTTGCAA 57.088 40.909 0.00 0.00 46.55 4.08
273 274 5.257082 GAAACTACAGGGTTTCTTGCAAA 57.743 39.130 0.00 0.00 46.55 3.68
274 275 5.656480 GAAACTACAGGGTTTCTTGCAAAA 58.344 37.500 0.00 0.00 46.55 2.44
275 276 5.669164 AACTACAGGGTTTCTTGCAAAAA 57.331 34.783 0.00 1.75 0.00 1.94
276 277 5.006153 ACTACAGGGTTTCTTGCAAAAAC 57.994 39.130 19.96 19.96 36.18 2.43
277 278 3.971245 ACAGGGTTTCTTGCAAAAACA 57.029 38.095 24.99 2.61 38.16 2.83
278 279 4.278975 ACAGGGTTTCTTGCAAAAACAA 57.721 36.364 24.99 7.34 38.16 2.83
279 280 4.842574 ACAGGGTTTCTTGCAAAAACAAT 58.157 34.783 24.99 16.22 38.16 2.71
280 281 5.983540 ACAGGGTTTCTTGCAAAAACAATA 58.016 33.333 24.99 0.00 38.16 1.90
281 282 6.048509 ACAGGGTTTCTTGCAAAAACAATAG 58.951 36.000 24.99 17.89 38.16 1.73
282 283 6.048509 CAGGGTTTCTTGCAAAAACAATAGT 58.951 36.000 24.99 11.27 38.16 2.12
283 284 6.200854 CAGGGTTTCTTGCAAAAACAATAGTC 59.799 38.462 24.99 14.14 38.16 2.59
284 285 6.045955 GGGTTTCTTGCAAAAACAATAGTCA 58.954 36.000 24.99 0.00 38.16 3.41
285 286 6.200854 GGGTTTCTTGCAAAAACAATAGTCAG 59.799 38.462 24.99 3.96 38.16 3.51
286 287 6.978080 GGTTTCTTGCAAAAACAATAGTCAGA 59.022 34.615 24.99 5.90 38.16 3.27
287 288 7.491048 GGTTTCTTGCAAAAACAATAGTCAGAA 59.509 33.333 24.99 10.50 38.16 3.02
288 289 7.985634 TTCTTGCAAAAACAATAGTCAGAAC 57.014 32.000 0.00 0.00 0.00 3.01
289 290 6.198687 TCTTGCAAAAACAATAGTCAGAACG 58.801 36.000 0.00 0.00 0.00 3.95
290 291 5.743026 TGCAAAAACAATAGTCAGAACGA 57.257 34.783 0.00 0.00 0.00 3.85
291 292 6.125327 TGCAAAAACAATAGTCAGAACGAA 57.875 33.333 0.00 0.00 0.00 3.85
292 293 6.198687 TGCAAAAACAATAGTCAGAACGAAG 58.801 36.000 0.00 0.00 0.00 3.79
293 294 5.625311 GCAAAAACAATAGTCAGAACGAAGG 59.375 40.000 0.00 0.00 0.00 3.46
294 295 5.941948 AAAACAATAGTCAGAACGAAGGG 57.058 39.130 0.00 0.00 0.00 3.95
295 296 4.618920 AACAATAGTCAGAACGAAGGGT 57.381 40.909 0.00 0.00 0.00 4.34
296 297 4.618920 ACAATAGTCAGAACGAAGGGTT 57.381 40.909 0.00 0.00 42.96 4.11
297 298 4.969484 ACAATAGTCAGAACGAAGGGTTT 58.031 39.130 0.00 0.00 39.50 3.27
298 299 5.374071 ACAATAGTCAGAACGAAGGGTTTT 58.626 37.500 0.00 0.00 39.50 2.43
299 300 5.469084 ACAATAGTCAGAACGAAGGGTTTTC 59.531 40.000 0.00 0.00 39.50 2.29
300 301 3.840124 AGTCAGAACGAAGGGTTTTCT 57.160 42.857 0.00 0.00 39.50 2.52
301 302 3.729966 AGTCAGAACGAAGGGTTTTCTC 58.270 45.455 0.00 0.00 39.50 2.87
302 303 3.134081 AGTCAGAACGAAGGGTTTTCTCA 59.866 43.478 0.00 0.00 39.50 3.27
303 304 3.247886 GTCAGAACGAAGGGTTTTCTCAC 59.752 47.826 0.00 0.00 39.50 3.51
304 305 2.548480 CAGAACGAAGGGTTTTCTCACC 59.452 50.000 0.00 0.00 39.50 4.02
305 306 2.438392 AGAACGAAGGGTTTTCTCACCT 59.562 45.455 0.00 0.00 39.50 4.00
306 307 3.644738 AGAACGAAGGGTTTTCTCACCTA 59.355 43.478 0.00 0.00 39.50 3.08
307 308 4.102054 AGAACGAAGGGTTTTCTCACCTAA 59.898 41.667 0.00 0.00 39.50 2.69
308 309 4.635699 ACGAAGGGTTTTCTCACCTAAT 57.364 40.909 0.00 0.00 36.97 1.73
309 310 5.750352 ACGAAGGGTTTTCTCACCTAATA 57.250 39.130 0.00 0.00 36.97 0.98
310 311 6.117975 ACGAAGGGTTTTCTCACCTAATAA 57.882 37.500 0.00 0.00 36.97 1.40
311 312 6.171213 ACGAAGGGTTTTCTCACCTAATAAG 58.829 40.000 0.00 0.00 36.97 1.73
312 313 8.226921 AACGAAGGGTTTTCTCACCTAATAAGG 61.227 40.741 0.00 0.00 41.93 2.69
321 322 1.370064 CCTAATAAGGGACCGCGGG 59.630 63.158 31.76 11.88 39.48 6.13
322 323 1.405272 CCTAATAAGGGACCGCGGGT 61.405 60.000 31.76 15.52 39.48 5.28
323 324 0.466963 CTAATAAGGGACCGCGGGTT 59.533 55.000 31.76 18.70 35.25 4.11
324 325 0.178533 TAATAAGGGACCGCGGGTTG 59.821 55.000 31.76 3.90 35.25 3.77
325 326 1.555477 AATAAGGGACCGCGGGTTGA 61.555 55.000 31.76 9.76 35.25 3.18
326 327 1.555477 ATAAGGGACCGCGGGTTGAA 61.555 55.000 31.76 10.58 35.25 2.69
327 328 1.555477 TAAGGGACCGCGGGTTGAAT 61.555 55.000 31.76 13.29 35.25 2.57
328 329 1.555477 AAGGGACCGCGGGTTGAATA 61.555 55.000 31.76 0.00 35.25 1.75
329 330 1.147600 GGGACCGCGGGTTGAATAT 59.852 57.895 31.76 4.91 35.25 1.28
330 331 0.464916 GGGACCGCGGGTTGAATATT 60.465 55.000 31.76 3.99 35.25 1.28
331 332 1.202675 GGGACCGCGGGTTGAATATTA 60.203 52.381 31.76 0.00 35.25 0.98
332 333 2.140717 GGACCGCGGGTTGAATATTAG 58.859 52.381 31.76 0.00 35.25 1.73
333 334 2.224113 GGACCGCGGGTTGAATATTAGA 60.224 50.000 31.76 0.00 35.25 2.10
334 335 3.460103 GACCGCGGGTTGAATATTAGAA 58.540 45.455 31.76 0.00 35.25 2.10
335 336 3.872771 GACCGCGGGTTGAATATTAGAAA 59.127 43.478 31.76 0.00 35.25 2.52
336 337 3.875134 ACCGCGGGTTGAATATTAGAAAG 59.125 43.478 31.76 0.00 27.29 2.62
337 338 3.875134 CCGCGGGTTGAATATTAGAAAGT 59.125 43.478 20.10 0.00 0.00 2.66
338 339 4.260620 CCGCGGGTTGAATATTAGAAAGTG 60.261 45.833 20.10 0.00 0.00 3.16
339 340 4.598062 GCGGGTTGAATATTAGAAAGTGC 58.402 43.478 0.00 0.00 0.00 4.40
340 341 4.095782 GCGGGTTGAATATTAGAAAGTGCA 59.904 41.667 0.00 0.00 0.00 4.57
341 342 5.392595 GCGGGTTGAATATTAGAAAGTGCAA 60.393 40.000 0.00 0.00 0.00 4.08
342 343 6.680378 GCGGGTTGAATATTAGAAAGTGCAAT 60.680 38.462 0.00 0.00 0.00 3.56
343 344 6.692681 CGGGTTGAATATTAGAAAGTGCAATG 59.307 38.462 0.00 0.00 0.00 2.82
344 345 6.980397 GGGTTGAATATTAGAAAGTGCAATGG 59.020 38.462 0.00 0.00 0.00 3.16
345 346 6.476706 GGTTGAATATTAGAAAGTGCAATGGC 59.523 38.462 0.00 0.00 41.68 4.40
346 347 7.260603 GTTGAATATTAGAAAGTGCAATGGCT 58.739 34.615 0.00 0.00 41.91 4.75
347 348 7.408756 TGAATATTAGAAAGTGCAATGGCTT 57.591 32.000 0.00 0.00 41.91 4.35
348 349 7.839907 TGAATATTAGAAAGTGCAATGGCTTT 58.160 30.769 0.02 0.02 41.91 3.51
349 350 8.313292 TGAATATTAGAAAGTGCAATGGCTTTT 58.687 29.630 2.00 0.00 41.91 2.27
350 351 9.154847 GAATATTAGAAAGTGCAATGGCTTTTT 57.845 29.630 2.00 0.00 41.91 1.94
366 367 2.359523 TTTTTGCAAAAATGCGCGAC 57.640 40.000 28.85 0.88 37.69 5.19
367 368 0.228238 TTTTGCAAAAATGCGCGACG 59.772 45.000 21.94 0.00 37.69 5.12
368 369 1.543941 TTTGCAAAAATGCGCGACGG 61.544 50.000 12.10 0.00 37.69 4.79
369 370 2.127042 GCAAAAATGCGCGACGGA 60.127 55.556 12.10 0.00 0.00 4.69
370 371 2.425394 GCAAAAATGCGCGACGGAC 61.425 57.895 12.10 0.00 0.00 4.79
371 372 2.137395 CAAAAATGCGCGACGGACG 61.137 57.895 12.10 0.00 45.66 4.79
372 373 2.311701 AAAAATGCGCGACGGACGA 61.312 52.632 12.10 0.00 45.77 4.20
373 374 2.488852 AAAAATGCGCGACGGACGAC 62.489 55.000 12.10 0.00 45.77 4.34
378 379 4.394078 CGCGACGGACGACCAGAA 62.394 66.667 0.00 0.00 45.77 3.02
379 380 2.504244 GCGACGGACGACCAGAAG 60.504 66.667 4.48 0.00 45.77 2.85
380 381 2.504244 CGACGGACGACCAGAAGC 60.504 66.667 4.48 0.00 45.77 3.86
381 382 2.649034 GACGGACGACCAGAAGCA 59.351 61.111 4.48 0.00 35.59 3.91
382 383 1.006571 GACGGACGACCAGAAGCAA 60.007 57.895 4.48 0.00 35.59 3.91
383 384 0.389948 GACGGACGACCAGAAGCAAT 60.390 55.000 4.48 0.00 35.59 3.56
384 385 0.670546 ACGGACGACCAGAAGCAATG 60.671 55.000 4.48 0.00 35.59 2.82
385 386 1.796796 GGACGACCAGAAGCAATGC 59.203 57.895 0.00 0.00 35.97 3.56
386 387 1.421485 GACGACCAGAAGCAATGCG 59.579 57.895 0.00 0.00 0.00 4.73
387 388 1.291877 GACGACCAGAAGCAATGCGT 61.292 55.000 0.00 0.00 0.00 5.24
388 389 1.133253 CGACCAGAAGCAATGCGTG 59.867 57.895 0.00 0.00 0.00 5.34
389 390 1.503542 GACCAGAAGCAATGCGTGG 59.496 57.895 18.47 18.47 35.77 4.94
390 391 1.228245 ACCAGAAGCAATGCGTGGT 60.228 52.632 19.55 19.55 40.58 4.16
400 401 5.734855 AGCAATGCGTGGTTTATTAGTAG 57.265 39.130 0.00 0.00 32.77 2.57
401 402 4.574828 AGCAATGCGTGGTTTATTAGTAGG 59.425 41.667 0.00 0.00 32.77 3.18
402 403 4.334481 GCAATGCGTGGTTTATTAGTAGGT 59.666 41.667 0.00 0.00 0.00 3.08
403 404 5.524646 GCAATGCGTGGTTTATTAGTAGGTA 59.475 40.000 0.00 0.00 0.00 3.08
404 405 6.037391 GCAATGCGTGGTTTATTAGTAGGTAA 59.963 38.462 0.00 0.00 0.00 2.85
405 406 7.627340 CAATGCGTGGTTTATTAGTAGGTAAG 58.373 38.462 0.00 0.00 0.00 2.34
406 407 6.528537 TGCGTGGTTTATTAGTAGGTAAGA 57.471 37.500 0.00 0.00 0.00 2.10
407 408 7.116075 TGCGTGGTTTATTAGTAGGTAAGAT 57.884 36.000 0.00 0.00 0.00 2.40
408 409 8.236585 TGCGTGGTTTATTAGTAGGTAAGATA 57.763 34.615 0.00 0.00 0.00 1.98
409 410 8.694540 TGCGTGGTTTATTAGTAGGTAAGATAA 58.305 33.333 0.00 0.00 0.00 1.75
410 411 9.189723 GCGTGGTTTATTAGTAGGTAAGATAAG 57.810 37.037 0.00 0.00 0.00 1.73
445 446 9.688091 AGATAAGATAAGATATACGAAGGCTGA 57.312 33.333 0.00 0.00 0.00 4.26
457 458 2.664916 GAAGGCTGAACACGTACGTAA 58.335 47.619 22.34 6.35 0.00 3.18
468 469 3.427528 ACACGTACGTAATTGCTCTGTTG 59.572 43.478 22.34 6.36 0.00 3.33
471 472 4.561606 ACGTACGTAATTGCTCTGTTGATC 59.438 41.667 21.41 0.00 0.00 2.92
480 482 5.638596 TTGCTCTGTTGATCTAGTTCGTA 57.361 39.130 0.00 0.00 0.00 3.43
511 513 1.070175 GGTTGTGGTGTGACGAATTCG 60.070 52.381 25.64 25.64 46.33 3.34
512 514 1.862201 GTTGTGGTGTGACGAATTCGA 59.138 47.619 33.05 10.13 43.02 3.71
513 515 1.778334 TGTGGTGTGACGAATTCGAG 58.222 50.000 33.05 6.83 43.02 4.04
514 516 1.338655 TGTGGTGTGACGAATTCGAGA 59.661 47.619 33.05 16.13 43.02 4.04
515 517 1.719780 GTGGTGTGACGAATTCGAGAC 59.280 52.381 33.05 25.42 43.02 3.36
516 518 1.338655 TGGTGTGACGAATTCGAGACA 59.661 47.619 33.05 27.38 43.02 3.41
517 519 1.986378 GGTGTGACGAATTCGAGACAG 59.014 52.381 33.05 4.51 43.02 3.51
524 526 1.651138 CGAATTCGAGACAGCAGACAC 59.349 52.381 23.29 0.00 43.02 3.67
534 536 2.470821 ACAGCAGACACGTGTAAGTTC 58.529 47.619 23.44 8.84 0.00 3.01
593 624 9.738832 TTTGTTTGACGATATGATACGAAGATA 57.261 29.630 0.00 0.00 0.00 1.98
594 625 9.908152 TTGTTTGACGATATGATACGAAGATAT 57.092 29.630 0.00 0.00 0.00 1.63
595 626 9.908152 TGTTTGACGATATGATACGAAGATATT 57.092 29.630 0.00 0.00 0.00 1.28
598 629 8.822105 TGACGATATGATACGAAGATATTTCG 57.178 34.615 14.42 14.42 46.36 3.46
668 702 5.631026 CCTCATAATCGGAACAACAAACTG 58.369 41.667 0.00 0.00 0.00 3.16
951 1653 2.588596 CACACAGCTCGCACCACA 60.589 61.111 0.00 0.00 0.00 4.17
954 1656 2.281070 ACAGCTCGCACCACAAGG 60.281 61.111 0.00 0.00 42.21 3.61
955 1657 3.730761 CAGCTCGCACCACAAGGC 61.731 66.667 0.00 0.00 39.06 4.35
970 1677 4.379394 CCACAAGGCACATACACATAACAC 60.379 45.833 0.00 0.00 0.00 3.32
975 1682 5.750524 AGGCACATACACATAACACCAATA 58.249 37.500 0.00 0.00 0.00 1.90
2231 3027 8.478877 TGCTTCAAAATAGGTCCTTGTTTAAAA 58.521 29.630 0.00 0.00 0.00 1.52
2328 3125 2.018542 TTAGGTGGCACGACAATAGC 57.981 50.000 12.17 0.00 0.00 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.899239 GGGATCTCGCGGCTGGTG 62.899 72.222 6.13 0.00 0.00 4.17
20 21 4.292178 GAGGGATCTCGCGGCTGG 62.292 72.222 6.13 0.00 0.00 4.85
21 22 4.292178 GGAGGGATCTCGCGGCTG 62.292 72.222 6.13 0.00 40.85 4.85
27 28 1.617850 CAAGATGAGGGAGGGATCTCG 59.382 57.143 0.00 0.00 40.85 4.04
28 29 1.347378 GCAAGATGAGGGAGGGATCTC 59.653 57.143 0.00 0.00 39.25 2.75
29 30 1.433121 GCAAGATGAGGGAGGGATCT 58.567 55.000 0.00 0.00 0.00 2.75
30 31 0.034616 CGCAAGATGAGGGAGGGATC 59.965 60.000 0.00 0.00 43.02 3.36
31 32 0.399091 TCGCAAGATGAGGGAGGGAT 60.399 55.000 0.00 0.00 45.01 3.85
32 33 1.001631 TCGCAAGATGAGGGAGGGA 59.998 57.895 0.00 0.00 45.01 4.20
33 34 3.634202 TCGCAAGATGAGGGAGGG 58.366 61.111 0.00 0.00 45.01 4.30
44 45 2.447244 AGAAGGAGAAGTGTCGCAAG 57.553 50.000 0.00 0.00 0.00 4.01
45 46 3.849911 CATAGAAGGAGAAGTGTCGCAA 58.150 45.455 0.00 0.00 0.00 4.85
46 47 2.417379 GCATAGAAGGAGAAGTGTCGCA 60.417 50.000 0.00 0.00 0.00 5.10
47 48 2.197577 GCATAGAAGGAGAAGTGTCGC 58.802 52.381 0.00 0.00 0.00 5.19
48 49 2.428890 AGGCATAGAAGGAGAAGTGTCG 59.571 50.000 0.00 0.00 0.00 4.35
49 50 4.479786 AAGGCATAGAAGGAGAAGTGTC 57.520 45.455 0.00 0.00 0.00 3.67
50 51 4.534103 AGAAAGGCATAGAAGGAGAAGTGT 59.466 41.667 0.00 0.00 0.00 3.55
51 52 5.096443 AGAAAGGCATAGAAGGAGAAGTG 57.904 43.478 0.00 0.00 0.00 3.16
52 53 5.029474 AGAGAAAGGCATAGAAGGAGAAGT 58.971 41.667 0.00 0.00 0.00 3.01
53 54 5.363580 AGAGAGAAAGGCATAGAAGGAGAAG 59.636 44.000 0.00 0.00 0.00 2.85
54 55 5.276440 AGAGAGAAAGGCATAGAAGGAGAA 58.724 41.667 0.00 0.00 0.00 2.87
55 56 4.877773 AGAGAGAAAGGCATAGAAGGAGA 58.122 43.478 0.00 0.00 0.00 3.71
56 57 5.612725 AAGAGAGAAAGGCATAGAAGGAG 57.387 43.478 0.00 0.00 0.00 3.69
57 58 5.104735 GGAAAGAGAGAAAGGCATAGAAGGA 60.105 44.000 0.00 0.00 0.00 3.36
58 59 5.104569 AGGAAAGAGAGAAAGGCATAGAAGG 60.105 44.000 0.00 0.00 0.00 3.46
59 60 5.988287 AGGAAAGAGAGAAAGGCATAGAAG 58.012 41.667 0.00 0.00 0.00 2.85
60 61 5.723887 AGAGGAAAGAGAGAAAGGCATAGAA 59.276 40.000 0.00 0.00 0.00 2.10
61 62 5.276440 AGAGGAAAGAGAGAAAGGCATAGA 58.724 41.667 0.00 0.00 0.00 1.98
62 63 5.453198 GGAGAGGAAAGAGAGAAAGGCATAG 60.453 48.000 0.00 0.00 0.00 2.23
63 64 4.407296 GGAGAGGAAAGAGAGAAAGGCATA 59.593 45.833 0.00 0.00 0.00 3.14
64 65 3.199727 GGAGAGGAAAGAGAGAAAGGCAT 59.800 47.826 0.00 0.00 0.00 4.40
65 66 2.569404 GGAGAGGAAAGAGAGAAAGGCA 59.431 50.000 0.00 0.00 0.00 4.75
66 67 2.093181 GGGAGAGGAAAGAGAGAAAGGC 60.093 54.545 0.00 0.00 0.00 4.35
67 68 2.503765 GGGGAGAGGAAAGAGAGAAAGG 59.496 54.545 0.00 0.00 0.00 3.11
68 69 2.503765 GGGGGAGAGGAAAGAGAGAAAG 59.496 54.545 0.00 0.00 0.00 2.62
69 70 2.114506 AGGGGGAGAGGAAAGAGAGAAA 59.885 50.000 0.00 0.00 0.00 2.52
70 71 1.725182 AGGGGGAGAGGAAAGAGAGAA 59.275 52.381 0.00 0.00 0.00 2.87
71 72 1.289530 GAGGGGGAGAGGAAAGAGAGA 59.710 57.143 0.00 0.00 0.00 3.10
72 73 1.007721 TGAGGGGGAGAGGAAAGAGAG 59.992 57.143 0.00 0.00 0.00 3.20
73 74 1.093408 TGAGGGGGAGAGGAAAGAGA 58.907 55.000 0.00 0.00 0.00 3.10
74 75 1.199615 GTGAGGGGGAGAGGAAAGAG 58.800 60.000 0.00 0.00 0.00 2.85
75 76 0.491823 TGTGAGGGGGAGAGGAAAGA 59.508 55.000 0.00 0.00 0.00 2.52
76 77 0.615850 GTGTGAGGGGGAGAGGAAAG 59.384 60.000 0.00 0.00 0.00 2.62
77 78 0.840722 GGTGTGAGGGGGAGAGGAAA 60.841 60.000 0.00 0.00 0.00 3.13
78 79 1.229529 GGTGTGAGGGGGAGAGGAA 60.230 63.158 0.00 0.00 0.00 3.36
79 80 2.450243 GGTGTGAGGGGGAGAGGA 59.550 66.667 0.00 0.00 0.00 3.71
80 81 2.689034 GGGTGTGAGGGGGAGAGG 60.689 72.222 0.00 0.00 0.00 3.69
81 82 1.992277 CAGGGTGTGAGGGGGAGAG 60.992 68.421 0.00 0.00 0.00 3.20
82 83 2.122729 CAGGGTGTGAGGGGGAGA 59.877 66.667 0.00 0.00 0.00 3.71
83 84 2.203998 ACAGGGTGTGAGGGGGAG 60.204 66.667 0.00 0.00 0.00 4.30
84 85 2.203938 GACAGGGTGTGAGGGGGA 60.204 66.667 0.00 0.00 0.00 4.81
85 86 2.203998 AGACAGGGTGTGAGGGGG 60.204 66.667 0.00 0.00 0.00 5.40
86 87 1.229336 AGAGACAGGGTGTGAGGGG 60.229 63.158 0.00 0.00 0.00 4.79
87 88 0.252012 AGAGAGACAGGGTGTGAGGG 60.252 60.000 0.00 0.00 0.00 4.30
88 89 1.181786 GAGAGAGACAGGGTGTGAGG 58.818 60.000 0.00 0.00 0.00 3.86
89 90 2.214376 AGAGAGAGACAGGGTGTGAG 57.786 55.000 0.00 0.00 0.00 3.51
90 91 2.685106 AAGAGAGAGACAGGGTGTGA 57.315 50.000 0.00 0.00 0.00 3.58
91 92 4.282195 AGTTAAAGAGAGAGACAGGGTGTG 59.718 45.833 0.00 0.00 0.00 3.82
92 93 4.282195 CAGTTAAAGAGAGAGACAGGGTGT 59.718 45.833 0.00 0.00 0.00 4.16
93 94 4.322349 CCAGTTAAAGAGAGAGACAGGGTG 60.322 50.000 0.00 0.00 0.00 4.61
94 95 3.835395 CCAGTTAAAGAGAGAGACAGGGT 59.165 47.826 0.00 0.00 0.00 4.34
95 96 4.090090 TCCAGTTAAAGAGAGAGACAGGG 58.910 47.826 0.00 0.00 0.00 4.45
96 97 5.420421 TCATCCAGTTAAAGAGAGAGACAGG 59.580 44.000 0.00 0.00 0.00 4.00
97 98 6.522625 TCATCCAGTTAAAGAGAGAGACAG 57.477 41.667 0.00 0.00 0.00 3.51
98 99 5.105554 GCTCATCCAGTTAAAGAGAGAGACA 60.106 44.000 0.00 0.00 0.00 3.41
99 100 5.105554 TGCTCATCCAGTTAAAGAGAGAGAC 60.106 44.000 0.00 0.00 0.00 3.36
100 101 5.019470 TGCTCATCCAGTTAAAGAGAGAGA 58.981 41.667 0.00 0.00 0.00 3.10
101 102 5.336150 TGCTCATCCAGTTAAAGAGAGAG 57.664 43.478 0.00 0.00 0.00 3.20
102 103 5.481824 TCTTGCTCATCCAGTTAAAGAGAGA 59.518 40.000 0.00 0.00 0.00 3.10
103 104 5.580297 GTCTTGCTCATCCAGTTAAAGAGAG 59.420 44.000 0.00 0.00 0.00 3.20
104 105 5.012046 TGTCTTGCTCATCCAGTTAAAGAGA 59.988 40.000 0.00 0.00 0.00 3.10
105 106 5.240891 TGTCTTGCTCATCCAGTTAAAGAG 58.759 41.667 0.00 0.00 0.00 2.85
106 107 5.227569 TGTCTTGCTCATCCAGTTAAAGA 57.772 39.130 0.00 0.00 0.00 2.52
107 108 5.220548 CGATGTCTTGCTCATCCAGTTAAAG 60.221 44.000 0.00 0.00 38.60 1.85
108 109 4.631377 CGATGTCTTGCTCATCCAGTTAAA 59.369 41.667 0.00 0.00 38.60 1.52
109 110 4.183865 CGATGTCTTGCTCATCCAGTTAA 58.816 43.478 0.00 0.00 38.60 2.01
110 111 3.785486 CGATGTCTTGCTCATCCAGTTA 58.215 45.455 0.00 0.00 38.60 2.24
111 112 2.625737 CGATGTCTTGCTCATCCAGTT 58.374 47.619 0.00 0.00 38.60 3.16
112 113 1.741732 GCGATGTCTTGCTCATCCAGT 60.742 52.381 0.00 0.00 38.60 4.00
113 114 0.935898 GCGATGTCTTGCTCATCCAG 59.064 55.000 0.00 0.00 38.60 3.86
114 115 0.462581 GGCGATGTCTTGCTCATCCA 60.463 55.000 0.00 0.00 38.60 3.41
115 116 1.493950 CGGCGATGTCTTGCTCATCC 61.494 60.000 0.00 0.00 38.60 3.51
116 117 1.930100 CGGCGATGTCTTGCTCATC 59.070 57.895 0.00 0.00 38.49 2.92
117 118 2.176273 GCGGCGATGTCTTGCTCAT 61.176 57.895 12.98 0.00 31.87 2.90
118 119 2.815211 GCGGCGATGTCTTGCTCA 60.815 61.111 12.98 0.00 31.87 4.26
119 120 3.567797 GGCGGCGATGTCTTGCTC 61.568 66.667 12.98 0.00 31.87 4.26
183 184 4.208686 AGGAAGACGCGCGGATCC 62.209 66.667 35.22 32.64 0.00 3.36
184 185 2.655685 GAGGAAGACGCGCGGATC 60.656 66.667 35.22 26.06 0.00 3.36
185 186 4.554363 CGAGGAAGACGCGCGGAT 62.554 66.667 35.22 19.49 35.15 4.18
192 193 2.876645 GACAGCGCGAGGAAGACG 60.877 66.667 12.10 0.00 0.00 4.18
193 194 2.797866 TTCGACAGCGCGAGGAAGAC 62.798 60.000 12.10 0.00 41.79 3.01
194 195 2.622962 TTCGACAGCGCGAGGAAGA 61.623 57.895 12.10 0.00 41.79 2.87
195 196 2.126463 TTCGACAGCGCGAGGAAG 60.126 61.111 12.10 0.00 41.79 3.46
196 197 2.430244 GTTCGACAGCGCGAGGAA 60.430 61.111 12.10 1.59 41.79 3.36
197 198 4.753877 CGTTCGACAGCGCGAGGA 62.754 66.667 12.10 0.00 41.79 3.71
203 204 0.989164 TGATAAAGCGTTCGACAGCG 59.011 50.000 5.76 2.72 38.61 5.18
204 205 1.993370 AGTGATAAAGCGTTCGACAGC 59.007 47.619 3.31 3.31 0.00 4.40
205 206 4.149922 TCAAAGTGATAAAGCGTTCGACAG 59.850 41.667 0.00 0.00 0.00 3.51
206 207 4.052608 TCAAAGTGATAAAGCGTTCGACA 58.947 39.130 0.00 0.00 0.00 4.35
207 208 4.640805 TCAAAGTGATAAAGCGTTCGAC 57.359 40.909 0.00 0.00 0.00 4.20
208 209 5.333798 CCTTTCAAAGTGATAAAGCGTTCGA 60.334 40.000 0.00 0.00 0.00 3.71
209 210 4.846137 CCTTTCAAAGTGATAAAGCGTTCG 59.154 41.667 0.00 0.00 0.00 3.95
210 211 5.154222 CCCTTTCAAAGTGATAAAGCGTTC 58.846 41.667 0.00 0.00 0.00 3.95
211 212 4.558697 GCCCTTTCAAAGTGATAAAGCGTT 60.559 41.667 0.00 0.00 0.00 4.84
212 213 3.057526 GCCCTTTCAAAGTGATAAAGCGT 60.058 43.478 0.00 0.00 0.00 5.07
213 214 3.501950 GCCCTTTCAAAGTGATAAAGCG 58.498 45.455 0.00 0.00 0.00 4.68
214 215 3.673323 CGGCCCTTTCAAAGTGATAAAGC 60.673 47.826 0.00 0.00 0.00 3.51
215 216 3.673323 GCGGCCCTTTCAAAGTGATAAAG 60.673 47.826 0.00 0.00 0.00 1.85
216 217 2.230266 GCGGCCCTTTCAAAGTGATAAA 59.770 45.455 0.00 0.00 0.00 1.40
217 218 1.816224 GCGGCCCTTTCAAAGTGATAA 59.184 47.619 0.00 0.00 0.00 1.75
218 219 1.459450 GCGGCCCTTTCAAAGTGATA 58.541 50.000 0.00 0.00 0.00 2.15
219 220 1.586154 CGCGGCCCTTTCAAAGTGAT 61.586 55.000 0.00 0.00 0.00 3.06
220 221 2.258013 CGCGGCCCTTTCAAAGTGA 61.258 57.895 0.00 0.00 0.00 3.41
221 222 2.255252 CGCGGCCCTTTCAAAGTG 59.745 61.111 0.00 0.00 0.00 3.16
222 223 2.983592 CCGCGGCCCTTTCAAAGT 60.984 61.111 14.67 0.00 0.00 2.66
223 224 3.747976 CCCGCGGCCCTTTCAAAG 61.748 66.667 22.85 0.00 0.00 2.77
224 225 4.589675 ACCCGCGGCCCTTTCAAA 62.590 61.111 22.85 0.00 0.00 2.69
225 226 4.589675 AACCCGCGGCCCTTTCAA 62.590 61.111 22.85 0.00 0.00 2.69
228 229 2.487274 TATTGAACCCGCGGCCCTTT 62.487 55.000 22.85 9.60 0.00 3.11
229 230 2.974041 TATTGAACCCGCGGCCCTT 61.974 57.895 22.85 10.41 0.00 3.95
230 231 3.404438 TATTGAACCCGCGGCCCT 61.404 61.111 22.85 5.41 0.00 5.19
231 232 3.206957 GTATTGAACCCGCGGCCC 61.207 66.667 22.85 11.30 0.00 5.80
232 233 2.437002 TGTATTGAACCCGCGGCC 60.437 61.111 22.85 11.70 0.00 6.13
233 234 2.469516 CCTGTATTGAACCCGCGGC 61.470 63.158 22.85 7.02 0.00 6.53
234 235 0.391927 TTCCTGTATTGAACCCGCGG 60.392 55.000 21.04 21.04 0.00 6.46
235 236 1.129811 GTTTCCTGTATTGAACCCGCG 59.870 52.381 0.00 0.00 0.00 6.46
236 237 2.433436 AGTTTCCTGTATTGAACCCGC 58.567 47.619 0.00 0.00 0.00 6.13
237 238 4.571919 TGTAGTTTCCTGTATTGAACCCG 58.428 43.478 0.00 0.00 0.00 5.28
238 239 4.941873 CCTGTAGTTTCCTGTATTGAACCC 59.058 45.833 0.00 0.00 0.00 4.11
239 240 4.941873 CCCTGTAGTTTCCTGTATTGAACC 59.058 45.833 0.00 0.00 0.00 3.62
240 241 5.557866 ACCCTGTAGTTTCCTGTATTGAAC 58.442 41.667 0.00 0.00 0.00 3.18
241 242 5.836024 ACCCTGTAGTTTCCTGTATTGAA 57.164 39.130 0.00 0.00 0.00 2.69
242 243 5.836024 AACCCTGTAGTTTCCTGTATTGA 57.164 39.130 0.00 0.00 0.00 2.57
243 244 6.496338 GAAACCCTGTAGTTTCCTGTATTG 57.504 41.667 5.98 0.00 46.47 1.90
252 253 5.669164 TTTTGCAAGAAACCCTGTAGTTT 57.331 34.783 0.00 0.00 42.56 2.66
253 254 5.046950 TGTTTTTGCAAGAAACCCTGTAGTT 60.047 36.000 22.79 0.00 36.43 2.24
254 255 4.464597 TGTTTTTGCAAGAAACCCTGTAGT 59.535 37.500 22.79 0.00 36.43 2.73
255 256 5.004922 TGTTTTTGCAAGAAACCCTGTAG 57.995 39.130 22.79 0.00 36.43 2.74
256 257 5.407407 TTGTTTTTGCAAGAAACCCTGTA 57.593 34.783 22.79 10.17 36.43 2.74
257 258 3.971245 TGTTTTTGCAAGAAACCCTGT 57.029 38.095 22.79 0.00 36.43 4.00
258 259 6.048509 ACTATTGTTTTTGCAAGAAACCCTG 58.951 36.000 22.79 16.26 36.43 4.45
259 260 6.127196 TGACTATTGTTTTTGCAAGAAACCCT 60.127 34.615 22.79 16.35 36.43 4.34
260 261 6.045955 TGACTATTGTTTTTGCAAGAAACCC 58.954 36.000 22.79 7.83 36.43 4.11
261 262 6.978080 TCTGACTATTGTTTTTGCAAGAAACC 59.022 34.615 22.79 13.29 36.43 3.27
262 263 7.985634 TCTGACTATTGTTTTTGCAAGAAAC 57.014 32.000 20.72 20.72 37.48 2.78
263 264 7.219917 CGTTCTGACTATTGTTTTTGCAAGAAA 59.780 33.333 3.66 3.63 0.00 2.52
264 265 6.690957 CGTTCTGACTATTGTTTTTGCAAGAA 59.309 34.615 0.00 0.00 0.00 2.52
265 266 6.037720 TCGTTCTGACTATTGTTTTTGCAAGA 59.962 34.615 0.00 0.00 0.00 3.02
266 267 6.198687 TCGTTCTGACTATTGTTTTTGCAAG 58.801 36.000 0.00 0.00 0.00 4.01
267 268 6.125327 TCGTTCTGACTATTGTTTTTGCAA 57.875 33.333 0.00 0.00 0.00 4.08
268 269 5.743026 TCGTTCTGACTATTGTTTTTGCA 57.257 34.783 0.00 0.00 0.00 4.08
269 270 5.625311 CCTTCGTTCTGACTATTGTTTTTGC 59.375 40.000 0.00 0.00 0.00 3.68
270 271 6.142817 CCCTTCGTTCTGACTATTGTTTTTG 58.857 40.000 0.00 0.00 0.00 2.44
271 272 5.826208 ACCCTTCGTTCTGACTATTGTTTTT 59.174 36.000 0.00 0.00 0.00 1.94
272 273 5.374071 ACCCTTCGTTCTGACTATTGTTTT 58.626 37.500 0.00 0.00 0.00 2.43
273 274 4.969484 ACCCTTCGTTCTGACTATTGTTT 58.031 39.130 0.00 0.00 0.00 2.83
274 275 4.618920 ACCCTTCGTTCTGACTATTGTT 57.381 40.909 0.00 0.00 0.00 2.83
275 276 4.618920 AACCCTTCGTTCTGACTATTGT 57.381 40.909 0.00 0.00 0.00 2.71
276 277 5.701290 AGAAAACCCTTCGTTCTGACTATTG 59.299 40.000 0.00 0.00 31.78 1.90
277 278 5.866207 AGAAAACCCTTCGTTCTGACTATT 58.134 37.500 0.00 0.00 31.78 1.73
278 279 5.011738 TGAGAAAACCCTTCGTTCTGACTAT 59.988 40.000 0.00 0.00 31.78 2.12
279 280 4.342951 TGAGAAAACCCTTCGTTCTGACTA 59.657 41.667 0.00 0.00 31.78 2.59
280 281 3.134081 TGAGAAAACCCTTCGTTCTGACT 59.866 43.478 0.00 0.00 31.78 3.41
281 282 3.247886 GTGAGAAAACCCTTCGTTCTGAC 59.752 47.826 0.00 0.00 31.78 3.51
282 283 3.463944 GTGAGAAAACCCTTCGTTCTGA 58.536 45.455 0.00 0.00 31.78 3.27
283 284 2.548480 GGTGAGAAAACCCTTCGTTCTG 59.452 50.000 0.00 0.00 33.79 3.02
284 285 2.438392 AGGTGAGAAAACCCTTCGTTCT 59.562 45.455 0.00 0.00 41.54 3.01
285 286 2.847441 AGGTGAGAAAACCCTTCGTTC 58.153 47.619 0.00 0.00 41.54 3.95
286 287 4.426736 TTAGGTGAGAAAACCCTTCGTT 57.573 40.909 0.00 0.00 41.54 3.85
287 288 4.635699 ATTAGGTGAGAAAACCCTTCGT 57.364 40.909 0.00 0.00 41.54 3.85
288 289 5.585047 CCTTATTAGGTGAGAAAACCCTTCG 59.415 44.000 0.00 0.00 41.54 3.79
289 290 5.886474 CCCTTATTAGGTGAGAAAACCCTTC 59.114 44.000 0.00 0.00 41.54 3.46
290 291 5.554350 TCCCTTATTAGGTGAGAAAACCCTT 59.446 40.000 0.00 0.00 41.54 3.95
291 292 5.045066 GTCCCTTATTAGGTGAGAAAACCCT 60.045 44.000 0.00 0.00 41.54 4.34
292 293 5.191426 GTCCCTTATTAGGTGAGAAAACCC 58.809 45.833 0.00 0.00 41.54 4.11
293 294 5.191426 GGTCCCTTATTAGGTGAGAAAACC 58.809 45.833 0.00 0.00 40.19 3.27
294 295 4.874396 CGGTCCCTTATTAGGTGAGAAAAC 59.126 45.833 0.00 0.00 40.19 2.43
295 296 4.624604 GCGGTCCCTTATTAGGTGAGAAAA 60.625 45.833 0.00 0.00 40.19 2.29
296 297 3.118519 GCGGTCCCTTATTAGGTGAGAAA 60.119 47.826 0.00 0.00 40.19 2.52
297 298 2.433239 GCGGTCCCTTATTAGGTGAGAA 59.567 50.000 0.00 0.00 40.19 2.87
298 299 2.037144 GCGGTCCCTTATTAGGTGAGA 58.963 52.381 0.00 0.00 40.19 3.27
299 300 1.269621 CGCGGTCCCTTATTAGGTGAG 60.270 57.143 0.00 0.00 40.19 3.51
300 301 0.748450 CGCGGTCCCTTATTAGGTGA 59.252 55.000 0.00 0.00 40.19 4.02
301 302 0.249741 CCGCGGTCCCTTATTAGGTG 60.250 60.000 19.50 0.00 40.19 4.00
302 303 1.405272 CCCGCGGTCCCTTATTAGGT 61.405 60.000 26.12 0.00 40.19 3.08
303 304 1.370064 CCCGCGGTCCCTTATTAGG 59.630 63.158 26.12 0.00 41.60 2.69
304 305 0.466963 AACCCGCGGTCCCTTATTAG 59.533 55.000 26.12 6.79 33.12 1.73
305 306 0.178533 CAACCCGCGGTCCCTTATTA 59.821 55.000 26.12 0.00 33.12 0.98
306 307 1.078001 CAACCCGCGGTCCCTTATT 60.078 57.895 26.12 3.42 33.12 1.40
307 308 1.555477 TTCAACCCGCGGTCCCTTAT 61.555 55.000 26.12 0.00 33.12 1.73
308 309 1.555477 ATTCAACCCGCGGTCCCTTA 61.555 55.000 26.12 4.90 33.12 2.69
309 310 1.555477 TATTCAACCCGCGGTCCCTT 61.555 55.000 26.12 6.59 33.12 3.95
310 311 1.342672 ATATTCAACCCGCGGTCCCT 61.343 55.000 26.12 5.90 33.12 4.20
311 312 0.464916 AATATTCAACCCGCGGTCCC 60.465 55.000 26.12 0.00 33.12 4.46
312 313 2.140717 CTAATATTCAACCCGCGGTCC 58.859 52.381 26.12 0.00 33.12 4.46
313 314 3.102052 TCTAATATTCAACCCGCGGTC 57.898 47.619 26.12 0.00 33.12 4.79
314 315 3.547054 TTCTAATATTCAACCCGCGGT 57.453 42.857 26.12 9.63 37.65 5.68
315 316 3.875134 ACTTTCTAATATTCAACCCGCGG 59.125 43.478 21.04 21.04 0.00 6.46
316 317 4.785341 GCACTTTCTAATATTCAACCCGCG 60.785 45.833 0.00 0.00 0.00 6.46
317 318 4.095782 TGCACTTTCTAATATTCAACCCGC 59.904 41.667 0.00 0.00 0.00 6.13
318 319 5.811399 TGCACTTTCTAATATTCAACCCG 57.189 39.130 0.00 0.00 0.00 5.28
319 320 6.980397 CCATTGCACTTTCTAATATTCAACCC 59.020 38.462 0.00 0.00 0.00 4.11
320 321 6.476706 GCCATTGCACTTTCTAATATTCAACC 59.523 38.462 0.00 0.00 37.47 3.77
321 322 7.260603 AGCCATTGCACTTTCTAATATTCAAC 58.739 34.615 0.00 0.00 41.13 3.18
322 323 7.408756 AGCCATTGCACTTTCTAATATTCAA 57.591 32.000 0.00 0.00 41.13 2.69
323 324 7.408756 AAGCCATTGCACTTTCTAATATTCA 57.591 32.000 0.00 0.00 41.13 2.57
324 325 8.707938 AAAAGCCATTGCACTTTCTAATATTC 57.292 30.769 0.99 0.00 41.13 1.75
347 348 1.331507 CGTCGCGCATTTTTGCAAAAA 60.332 42.857 32.91 32.91 41.59 1.94
348 349 0.228238 CGTCGCGCATTTTTGCAAAA 59.772 45.000 20.46 20.46 34.41 2.44
349 350 1.543941 CCGTCGCGCATTTTTGCAAA 61.544 50.000 8.05 8.05 34.41 3.68
350 351 2.013483 CCGTCGCGCATTTTTGCAA 61.013 52.632 8.75 0.00 34.41 4.08
351 352 2.428236 CCGTCGCGCATTTTTGCA 60.428 55.556 8.75 0.00 34.41 4.08
352 353 2.127042 TCCGTCGCGCATTTTTGC 60.127 55.556 8.75 0.00 0.00 3.68
353 354 2.137395 CGTCCGTCGCGCATTTTTG 61.137 57.895 8.75 0.00 0.00 2.44
354 355 2.172419 CGTCCGTCGCGCATTTTT 59.828 55.556 8.75 0.00 0.00 1.94
355 356 2.735478 TCGTCCGTCGCGCATTTT 60.735 55.556 8.75 0.00 39.67 1.82
356 357 3.475774 GTCGTCCGTCGCGCATTT 61.476 61.111 8.75 0.00 39.67 2.32
361 362 4.394078 TTCTGGTCGTCCGTCGCG 62.394 66.667 0.00 0.00 39.67 5.87
362 363 2.504244 CTTCTGGTCGTCCGTCGC 60.504 66.667 0.00 0.00 39.67 5.19
363 364 2.504244 GCTTCTGGTCGTCCGTCG 60.504 66.667 0.00 0.00 41.41 5.12
364 365 0.389948 ATTGCTTCTGGTCGTCCGTC 60.390 55.000 0.00 0.00 36.30 4.79
365 366 0.670546 CATTGCTTCTGGTCGTCCGT 60.671 55.000 0.00 0.00 36.30 4.69
366 367 1.970917 GCATTGCTTCTGGTCGTCCG 61.971 60.000 0.16 0.00 36.30 4.79
367 368 1.796796 GCATTGCTTCTGGTCGTCC 59.203 57.895 0.16 0.00 0.00 4.79
368 369 1.291877 ACGCATTGCTTCTGGTCGTC 61.292 55.000 7.12 0.00 0.00 4.20
369 370 1.301716 ACGCATTGCTTCTGGTCGT 60.302 52.632 7.12 0.00 0.00 4.34
370 371 1.133253 CACGCATTGCTTCTGGTCG 59.867 57.895 7.12 0.00 0.00 4.79
371 372 1.237285 ACCACGCATTGCTTCTGGTC 61.237 55.000 13.78 0.00 28.55 4.02
372 373 0.823356 AACCACGCATTGCTTCTGGT 60.823 50.000 13.78 13.78 36.77 4.00
373 374 0.314935 AAACCACGCATTGCTTCTGG 59.685 50.000 7.12 10.56 0.00 3.86
374 375 2.987413 TAAACCACGCATTGCTTCTG 57.013 45.000 7.12 0.00 0.00 3.02
375 376 4.700213 ACTAATAAACCACGCATTGCTTCT 59.300 37.500 7.12 0.00 0.00 2.85
376 377 4.981794 ACTAATAAACCACGCATTGCTTC 58.018 39.130 7.12 0.00 0.00 3.86
377 378 5.065988 CCTACTAATAAACCACGCATTGCTT 59.934 40.000 7.12 0.00 0.00 3.91
378 379 4.574828 CCTACTAATAAACCACGCATTGCT 59.425 41.667 7.12 0.00 0.00 3.91
379 380 4.334481 ACCTACTAATAAACCACGCATTGC 59.666 41.667 0.00 0.00 0.00 3.56
380 381 7.493320 TCTTACCTACTAATAAACCACGCATTG 59.507 37.037 0.00 0.00 0.00 2.82
381 382 7.558604 TCTTACCTACTAATAAACCACGCATT 58.441 34.615 0.00 0.00 0.00 3.56
382 383 7.116075 TCTTACCTACTAATAAACCACGCAT 57.884 36.000 0.00 0.00 0.00 4.73
383 384 6.528537 TCTTACCTACTAATAAACCACGCA 57.471 37.500 0.00 0.00 0.00 5.24
384 385 9.189723 CTTATCTTACCTACTAATAAACCACGC 57.810 37.037 0.00 0.00 0.00 5.34
419 420 9.688091 TCAGCCTTCGTATATCTTATCTTATCT 57.312 33.333 0.00 0.00 0.00 1.98
422 423 9.074576 TGTTCAGCCTTCGTATATCTTATCTTA 57.925 33.333 0.00 0.00 0.00 2.10
423 424 7.868415 GTGTTCAGCCTTCGTATATCTTATCTT 59.132 37.037 0.00 0.00 0.00 2.40
424 425 7.371936 GTGTTCAGCCTTCGTATATCTTATCT 58.628 38.462 0.00 0.00 0.00 1.98
425 426 6.305877 CGTGTTCAGCCTTCGTATATCTTATC 59.694 42.308 0.00 0.00 0.00 1.75
426 427 6.150318 CGTGTTCAGCCTTCGTATATCTTAT 58.850 40.000 0.00 0.00 0.00 1.73
427 428 5.066893 ACGTGTTCAGCCTTCGTATATCTTA 59.933 40.000 0.00 0.00 33.04 2.10
428 429 4.142227 ACGTGTTCAGCCTTCGTATATCTT 60.142 41.667 0.00 0.00 33.04 2.40
429 430 3.380637 ACGTGTTCAGCCTTCGTATATCT 59.619 43.478 0.00 0.00 33.04 1.98
430 431 3.703420 ACGTGTTCAGCCTTCGTATATC 58.297 45.455 0.00 0.00 33.04 1.63
431 432 3.795623 ACGTGTTCAGCCTTCGTATAT 57.204 42.857 0.00 0.00 33.04 0.86
432 433 3.485711 CGTACGTGTTCAGCCTTCGTATA 60.486 47.826 7.22 0.00 38.77 1.47
433 434 2.730090 CGTACGTGTTCAGCCTTCGTAT 60.730 50.000 7.22 0.00 38.77 3.06
434 435 1.400113 CGTACGTGTTCAGCCTTCGTA 60.400 52.381 7.22 0.00 36.24 3.43
435 436 0.662374 CGTACGTGTTCAGCCTTCGT 60.662 55.000 7.22 0.00 38.30 3.85
436 437 0.662374 ACGTACGTGTTCAGCCTTCG 60.662 55.000 22.14 0.00 0.00 3.79
437 438 2.336554 TACGTACGTGTTCAGCCTTC 57.663 50.000 30.25 0.00 0.00 3.46
438 439 2.798976 TTACGTACGTGTTCAGCCTT 57.201 45.000 30.25 1.85 0.00 4.35
439 440 2.991190 CAATTACGTACGTGTTCAGCCT 59.009 45.455 30.25 2.64 0.00 4.58
440 441 2.473376 GCAATTACGTACGTGTTCAGCC 60.473 50.000 30.25 9.03 0.00 4.85
441 442 2.410730 AGCAATTACGTACGTGTTCAGC 59.589 45.455 30.25 23.99 0.00 4.26
442 443 3.918591 AGAGCAATTACGTACGTGTTCAG 59.081 43.478 30.25 16.38 0.00 3.02
443 444 3.671459 CAGAGCAATTACGTACGTGTTCA 59.329 43.478 30.25 7.93 0.00 3.18
444 445 3.671928 ACAGAGCAATTACGTACGTGTTC 59.328 43.478 30.25 19.48 0.00 3.18
445 446 3.645884 ACAGAGCAATTACGTACGTGTT 58.354 40.909 30.25 20.70 0.00 3.32
457 458 5.078411 ACGAACTAGATCAACAGAGCAAT 57.922 39.130 0.00 0.00 0.00 3.56
480 482 2.366266 ACACCACAACCAGTACGTACAT 59.634 45.455 26.55 9.67 0.00 2.29
511 513 2.287668 ACTTACACGTGTCTGCTGTCTC 60.288 50.000 27.16 0.00 0.00 3.36
512 514 1.681793 ACTTACACGTGTCTGCTGTCT 59.318 47.619 27.16 0.00 0.00 3.41
513 515 2.135664 ACTTACACGTGTCTGCTGTC 57.864 50.000 27.16 0.00 0.00 3.51
514 516 2.470821 GAACTTACACGTGTCTGCTGT 58.529 47.619 27.16 14.36 0.00 4.40
515 517 1.452025 CGAACTTACACGTGTCTGCTG 59.548 52.381 27.16 13.73 0.00 4.41
516 518 1.767289 CGAACTTACACGTGTCTGCT 58.233 50.000 27.16 10.45 0.00 4.24
517 519 0.161024 GCGAACTTACACGTGTCTGC 59.839 55.000 27.16 16.42 0.00 4.26
524 526 3.061697 GGGAACTTATGCGAACTTACACG 59.938 47.826 0.00 0.00 0.00 4.49
596 627 9.483916 ACGAAATATCCATGTAATAATCAACGA 57.516 29.630 0.00 0.00 0.00 3.85
611 642 9.462174 GCAAATATGAAATCAACGAAATATCCA 57.538 29.630 0.00 0.00 0.00 3.41
612 643 8.915654 GGCAAATATGAAATCAACGAAATATCC 58.084 33.333 0.00 0.00 0.00 2.59
613 644 9.462174 TGGCAAATATGAAATCAACGAAATATC 57.538 29.630 0.00 0.00 0.00 1.63
614 645 9.985730 ATGGCAAATATGAAATCAACGAAATAT 57.014 25.926 0.00 0.00 0.00 1.28
615 646 9.814899 AATGGCAAATATGAAATCAACGAAATA 57.185 25.926 0.00 0.00 0.00 1.40
668 702 2.673368 CCTGTAACCTTGCGTGATCTTC 59.327 50.000 0.00 0.00 0.00 2.87
889 1585 4.595781 TGGTATTTATGGGCGGAAGATAGT 59.404 41.667 0.00 0.00 0.00 2.12
892 1588 3.244911 CCTGGTATTTATGGGCGGAAGAT 60.245 47.826 0.00 0.00 0.00 2.40
951 1653 4.027674 TGGTGTTATGTGTATGTGCCTT 57.972 40.909 0.00 0.00 0.00 4.35
954 1656 8.925161 ATTTTATTGGTGTTATGTGTATGTGC 57.075 30.769 0.00 0.00 0.00 4.57
970 1677 8.158169 TCGATTGATCCAAGAGATTTTATTGG 57.842 34.615 0.00 0.00 44.00 3.16
975 1682 7.334090 TCTTCTCGATTGATCCAAGAGATTTT 58.666 34.615 7.71 0.00 37.73 1.82
2295 3092 6.064717 GTGCCACCTAATGATCCTTTAGAAT 58.935 40.000 12.01 1.06 0.00 2.40
2314 3111 2.817834 GCCGCTATTGTCGTGCCA 60.818 61.111 0.00 0.00 0.00 4.92
2328 3125 5.505173 AGATGAAATTATTGGTCTTGCCG 57.495 39.130 0.00 0.00 41.21 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.