Multiple sequence alignment - TraesCS5A01G530200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G530200 chr5A 100.000 2321 0 0 1 2321 689157050 689154730 0.000000e+00 4287.0
1 TraesCS5A01G530200 chr4D 93.197 1176 45 10 596 1757 504508779 504507625 0.000000e+00 1696.0
2 TraesCS5A01G530200 chr4D 89.428 577 39 8 1765 2321 504380717 504380143 0.000000e+00 708.0
3 TraesCS5A01G530200 chr4D 89.081 577 40 9 1765 2321 504354610 504354037 0.000000e+00 695.0
4 TraesCS5A01G530200 chr4D 78.313 332 28 17 1001 1310 474916286 474916595 8.520000e-40 174.0
5 TraesCS5A01G530200 chr4D 95.402 87 4 0 1765 1851 504408193 504408107 3.110000e-29 139.0
6 TraesCS5A01G530200 chr2B 83.385 325 37 10 1001 1309 28893650 28893327 3.770000e-73 285.0
7 TraesCS5A01G530200 chr2B 82.051 78 8 6 45 118 373485065 373485140 6.920000e-06 62.1
8 TraesCS5A01G530200 chr4A 82.282 333 34 12 1001 1310 681182727 681182397 4.920000e-67 265.0
9 TraesCS5A01G530200 chr4A 82.249 169 19 10 1593 1757 680408284 680408445 4.020000e-28 135.0
10 TraesCS5A01G530200 chr2D 81.707 328 40 7 1001 1309 17025228 17024902 2.960000e-64 255.0
11 TraesCS5A01G530200 chr2D 84.615 169 21 5 365 532 571079119 571078955 1.850000e-36 163.0
12 TraesCS5A01G530200 chr2D 84.393 173 17 7 365 534 426426284 426426449 6.640000e-36 161.0
13 TraesCS5A01G530200 chr1B 81.731 312 37 5 45 336 665405805 665406116 2.300000e-60 243.0
14 TraesCS5A01G530200 chr6B 86.747 166 16 5 365 529 683376234 683376074 1.830000e-41 180.0
15 TraesCS5A01G530200 chr6D 85.799 169 19 5 365 532 218393514 218393678 8.520000e-40 174.0
16 TraesCS5A01G530200 chr6D 85.294 170 22 3 362 531 90135054 90134888 3.070000e-39 172.0
17 TraesCS5A01G530200 chr3D 85.799 169 19 5 362 529 553037749 553037913 8.520000e-40 174.0
18 TraesCS5A01G530200 chr3D 85.207 169 20 5 362 529 553071061 553071225 3.970000e-38 169.0
19 TraesCS5A01G530200 chr3D 84.615 169 21 5 362 529 553076262 553076426 1.850000e-36 163.0
20 TraesCS5A01G530200 chr3D 77.381 168 27 9 1146 1309 164546641 164546481 3.180000e-14 89.8
21 TraesCS5A01G530200 chr6A 85.207 169 20 5 365 532 297641220 297641384 3.970000e-38 169.0
22 TraesCS5A01G530200 chr5B 81.203 133 22 2 2185 2314 416827623 416827491 1.130000e-18 104.0
23 TraesCS5A01G530200 chr3B 77.976 168 26 9 1146 1309 240531763 240531603 6.830000e-16 95.3
24 TraesCS5A01G530200 chr3A 77.381 168 27 9 1146 1309 196762106 196761946 3.180000e-14 89.8
25 TraesCS5A01G530200 chr3A 83.333 72 9 3 45 114 611943568 611943638 1.930000e-06 63.9
26 TraesCS5A01G530200 chr1D 87.879 66 6 2 2248 2313 302711049 302710986 2.470000e-10 76.8
27 TraesCS5A01G530200 chr1A 83.099 71 7 5 47 114 403038442 403038374 2.490000e-05 60.2
28 TraesCS5A01G530200 chr7D 90.698 43 2 1 1481 1521 562159380 562159422 3.220000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G530200 chr5A 689154730 689157050 2320 True 4287 4287 100.000 1 2321 1 chr5A.!!$R1 2320
1 TraesCS5A01G530200 chr4D 504507625 504508779 1154 True 1696 1696 93.197 596 1757 1 chr4D.!!$R4 1161
2 TraesCS5A01G530200 chr4D 504380143 504380717 574 True 708 708 89.428 1765 2321 1 chr4D.!!$R2 556
3 TraesCS5A01G530200 chr4D 504354037 504354610 573 True 695 695 89.081 1765 2321 1 chr4D.!!$R1 556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 211 0.031857 CAGATGTAGAGAGGGCGCTG 59.968 60.0 8.56 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1902 1917 0.037975 GTCCGCGTCCTAGGAACAAA 60.038 55.0 14.65 0.0 38.41 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.859427 AATATGACATATTGGTTTTGTGAACTG 57.141 29.630 17.96 0.00 34.32 3.16
41 42 6.951062 TGACATATTGGTTTTGTGAACTGA 57.049 33.333 0.00 0.00 0.00 3.41
42 43 7.523293 TGACATATTGGTTTTGTGAACTGAT 57.477 32.000 0.00 0.00 0.00 2.90
43 44 7.592938 TGACATATTGGTTTTGTGAACTGATC 58.407 34.615 0.00 0.00 0.00 2.92
44 45 7.448161 TGACATATTGGTTTTGTGAACTGATCT 59.552 33.333 0.00 0.00 0.00 2.75
45 46 8.862325 ACATATTGGTTTTGTGAACTGATCTA 57.138 30.769 0.00 0.00 0.00 1.98
46 47 9.295825 ACATATTGGTTTTGTGAACTGATCTAA 57.704 29.630 0.00 0.00 0.00 2.10
47 48 9.778993 CATATTGGTTTTGTGAACTGATCTAAG 57.221 33.333 0.00 0.00 0.00 2.18
48 49 6.633500 TTGGTTTTGTGAACTGATCTAAGG 57.367 37.500 0.00 0.00 0.00 2.69
49 50 5.070001 TGGTTTTGTGAACTGATCTAAGGG 58.930 41.667 0.00 0.00 0.00 3.95
50 51 4.082733 GGTTTTGTGAACTGATCTAAGGGC 60.083 45.833 0.00 0.00 0.00 5.19
51 52 4.365514 TTTGTGAACTGATCTAAGGGCA 57.634 40.909 0.00 0.00 0.00 5.36
52 53 4.574674 TTGTGAACTGATCTAAGGGCAT 57.425 40.909 0.00 0.00 0.00 4.40
53 54 3.877559 TGTGAACTGATCTAAGGGCATG 58.122 45.455 0.00 0.00 0.00 4.06
54 55 3.209410 GTGAACTGATCTAAGGGCATGG 58.791 50.000 0.00 0.00 0.00 3.66
55 56 2.225467 GAACTGATCTAAGGGCATGGC 58.775 52.381 11.56 11.56 0.00 4.40
56 57 1.516110 ACTGATCTAAGGGCATGGCT 58.484 50.000 19.78 2.39 0.00 4.75
57 58 2.694397 ACTGATCTAAGGGCATGGCTA 58.306 47.619 19.78 3.58 0.00 3.93
58 59 3.048600 ACTGATCTAAGGGCATGGCTAA 58.951 45.455 19.78 4.00 0.00 3.09
59 60 3.181450 ACTGATCTAAGGGCATGGCTAAC 60.181 47.826 19.78 2.28 0.00 2.34
60 61 2.224281 TGATCTAAGGGCATGGCTAACG 60.224 50.000 19.78 6.07 0.00 3.18
61 62 0.468226 TCTAAGGGCATGGCTAACGG 59.532 55.000 19.78 6.37 0.00 4.44
62 63 0.180406 CTAAGGGCATGGCTAACGGT 59.820 55.000 19.78 1.14 0.00 4.83
63 64 1.414919 CTAAGGGCATGGCTAACGGTA 59.585 52.381 19.78 2.23 0.00 4.02
64 65 0.843984 AAGGGCATGGCTAACGGTAT 59.156 50.000 19.78 0.00 0.00 2.73
65 66 0.108585 AGGGCATGGCTAACGGTATG 59.891 55.000 19.78 0.00 0.00 2.39
66 67 1.515521 GGGCATGGCTAACGGTATGC 61.516 60.000 19.78 4.60 43.81 3.14
67 68 0.535102 GGCATGGCTAACGGTATGCT 60.535 55.000 12.86 0.00 43.96 3.79
68 69 1.308998 GCATGGCTAACGGTATGCTT 58.691 50.000 5.74 0.00 41.89 3.91
69 70 1.264288 GCATGGCTAACGGTATGCTTC 59.736 52.381 5.74 0.00 41.89 3.86
70 71 2.560504 CATGGCTAACGGTATGCTTCA 58.439 47.619 5.50 0.00 0.00 3.02
71 72 2.772077 TGGCTAACGGTATGCTTCAA 57.228 45.000 5.50 0.00 0.00 2.69
72 73 2.627945 TGGCTAACGGTATGCTTCAAG 58.372 47.619 5.50 0.00 0.00 3.02
73 74 2.235155 TGGCTAACGGTATGCTTCAAGA 59.765 45.455 0.00 0.00 0.00 3.02
74 75 2.866762 GGCTAACGGTATGCTTCAAGAG 59.133 50.000 0.00 0.00 0.00 2.85
75 76 3.522553 GCTAACGGTATGCTTCAAGAGT 58.477 45.455 0.00 0.00 0.00 3.24
76 77 3.307242 GCTAACGGTATGCTTCAAGAGTG 59.693 47.826 0.00 0.00 0.00 3.51
77 78 3.678056 AACGGTATGCTTCAAGAGTGA 57.322 42.857 0.00 0.00 0.00 3.41
78 79 3.895232 ACGGTATGCTTCAAGAGTGAT 57.105 42.857 0.00 0.00 32.48 3.06
79 80 3.525537 ACGGTATGCTTCAAGAGTGATG 58.474 45.455 0.00 0.00 32.48 3.07
84 85 1.005340 GCTTCAAGAGTGATGCCTCG 58.995 55.000 0.00 0.00 45.00 4.63
85 86 1.005340 CTTCAAGAGTGATGCCTCGC 58.995 55.000 0.00 0.00 36.56 5.03
86 87 0.321346 TTCAAGAGTGATGCCTCGCA 59.679 50.000 5.33 0.00 44.86 5.10
87 88 0.108472 TCAAGAGTGATGCCTCGCAG 60.108 55.000 5.33 0.00 43.65 5.18
88 89 1.449246 AAGAGTGATGCCTCGCAGC 60.449 57.895 5.33 0.00 45.81 5.25
89 90 2.866085 AAGAGTGATGCCTCGCAGCC 62.866 60.000 5.33 0.00 44.94 4.85
90 91 3.670637 GAGTGATGCCTCGCAGCCA 62.671 63.158 5.33 0.00 44.94 4.75
91 92 2.747460 GTGATGCCTCGCAGCCAA 60.747 61.111 0.00 0.00 44.94 4.52
92 93 2.747460 TGATGCCTCGCAGCCAAC 60.747 61.111 0.00 0.00 44.94 3.77
93 94 2.437359 GATGCCTCGCAGCCAACT 60.437 61.111 0.00 0.00 43.65 3.16
94 95 1.153369 GATGCCTCGCAGCCAACTA 60.153 57.895 0.00 0.00 43.65 2.24
95 96 1.153289 ATGCCTCGCAGCCAACTAG 60.153 57.895 0.00 0.00 43.65 2.57
96 97 2.512515 GCCTCGCAGCCAACTAGG 60.513 66.667 0.00 0.00 41.84 3.02
105 106 4.445699 CCAACTAGGCTCGGATGC 57.554 61.111 0.00 0.00 0.00 3.91
113 114 2.821366 GCTCGGATGCCACTGTGG 60.821 66.667 22.46 22.46 41.55 4.17
114 115 2.981302 CTCGGATGCCACTGTGGA 59.019 61.111 30.23 15.26 40.96 4.02
115 116 1.153489 CTCGGATGCCACTGTGGAG 60.153 63.158 30.23 13.32 40.96 3.86
116 117 1.892819 CTCGGATGCCACTGTGGAGT 61.893 60.000 30.23 16.81 40.96 3.85
117 118 0.613572 TCGGATGCCACTGTGGAGTA 60.614 55.000 30.23 15.21 40.96 2.59
118 119 0.249120 CGGATGCCACTGTGGAGTAA 59.751 55.000 30.23 12.15 40.96 2.24
119 120 1.740380 CGGATGCCACTGTGGAGTAAG 60.740 57.143 30.23 13.38 40.96 2.34
120 121 1.279271 GGATGCCACTGTGGAGTAAGT 59.721 52.381 30.23 8.22 40.96 2.24
121 122 2.290323 GGATGCCACTGTGGAGTAAGTT 60.290 50.000 30.23 5.73 40.96 2.66
122 123 3.412386 GATGCCACTGTGGAGTAAGTTT 58.588 45.455 30.23 4.69 40.96 2.66
123 124 4.564821 GGATGCCACTGTGGAGTAAGTTTA 60.565 45.833 30.23 4.63 40.96 2.01
124 125 4.002906 TGCCACTGTGGAGTAAGTTTAG 57.997 45.455 30.23 0.00 40.96 1.85
125 126 3.389983 TGCCACTGTGGAGTAAGTTTAGT 59.610 43.478 30.23 0.00 40.96 2.24
126 127 4.589798 TGCCACTGTGGAGTAAGTTTAGTA 59.410 41.667 30.23 0.00 40.96 1.82
127 128 5.169295 GCCACTGTGGAGTAAGTTTAGTAG 58.831 45.833 30.23 0.00 40.96 2.57
128 129 5.169295 CCACTGTGGAGTAAGTTTAGTAGC 58.831 45.833 22.33 0.00 40.96 3.58
129 130 5.169295 CACTGTGGAGTAAGTTTAGTAGCC 58.831 45.833 0.00 0.00 0.00 3.93
130 131 5.047235 CACTGTGGAGTAAGTTTAGTAGCCT 60.047 44.000 0.00 0.00 0.00 4.58
131 132 5.543020 ACTGTGGAGTAAGTTTAGTAGCCTT 59.457 40.000 0.00 0.00 0.00 4.35
132 133 5.790593 TGTGGAGTAAGTTTAGTAGCCTTG 58.209 41.667 0.00 0.00 0.00 3.61
133 134 4.630505 GTGGAGTAAGTTTAGTAGCCTTGC 59.369 45.833 0.00 0.00 0.00 4.01
134 135 4.285003 TGGAGTAAGTTTAGTAGCCTTGCA 59.715 41.667 0.00 0.00 0.00 4.08
135 136 4.870991 GGAGTAAGTTTAGTAGCCTTGCAG 59.129 45.833 0.00 0.00 0.00 4.41
136 137 5.480205 GAGTAAGTTTAGTAGCCTTGCAGT 58.520 41.667 0.00 0.00 0.00 4.40
137 138 5.238583 AGTAAGTTTAGTAGCCTTGCAGTG 58.761 41.667 0.00 0.00 0.00 3.66
138 139 3.771577 AGTTTAGTAGCCTTGCAGTGT 57.228 42.857 0.00 0.00 0.00 3.55
139 140 3.403038 AGTTTAGTAGCCTTGCAGTGTG 58.597 45.455 0.00 0.00 0.00 3.82
140 141 3.139077 GTTTAGTAGCCTTGCAGTGTGT 58.861 45.455 0.00 0.00 0.00 3.72
141 142 2.743636 TAGTAGCCTTGCAGTGTGTC 57.256 50.000 0.00 0.00 0.00 3.67
142 143 0.758734 AGTAGCCTTGCAGTGTGTCA 59.241 50.000 0.00 0.00 0.00 3.58
143 144 1.151668 GTAGCCTTGCAGTGTGTCAG 58.848 55.000 0.00 0.00 0.00 3.51
144 145 1.047801 TAGCCTTGCAGTGTGTCAGA 58.952 50.000 0.00 0.00 0.00 3.27
145 146 0.250209 AGCCTTGCAGTGTGTCAGAG 60.250 55.000 0.00 0.00 0.00 3.35
146 147 1.849976 GCCTTGCAGTGTGTCAGAGC 61.850 60.000 0.00 0.00 0.00 4.09
147 148 0.533531 CCTTGCAGTGTGTCAGAGCA 60.534 55.000 0.00 0.00 0.00 4.26
148 149 0.866427 CTTGCAGTGTGTCAGAGCAG 59.134 55.000 0.00 0.00 36.47 4.24
149 150 0.178767 TTGCAGTGTGTCAGAGCAGT 59.821 50.000 0.00 0.00 36.47 4.40
150 151 0.178767 TGCAGTGTGTCAGAGCAGTT 59.821 50.000 0.00 0.00 0.00 3.16
151 152 1.303309 GCAGTGTGTCAGAGCAGTTT 58.697 50.000 0.00 0.00 0.00 2.66
152 153 1.003116 GCAGTGTGTCAGAGCAGTTTG 60.003 52.381 0.00 0.00 0.00 2.93
153 154 1.003116 CAGTGTGTCAGAGCAGTTTGC 60.003 52.381 0.00 0.00 45.46 3.68
164 165 2.802556 GCAGTTTGCAGAAGAGATCG 57.197 50.000 0.00 0.00 44.26 3.69
165 166 1.202009 GCAGTTTGCAGAAGAGATCGC 60.202 52.381 0.00 0.00 44.26 4.58
166 167 2.344950 CAGTTTGCAGAAGAGATCGCT 58.655 47.619 0.00 0.00 0.00 4.93
167 168 2.093941 CAGTTTGCAGAAGAGATCGCTG 59.906 50.000 0.00 1.85 0.00 5.18
169 170 3.716585 GCAGAAGAGATCGCTGCC 58.283 61.111 16.76 6.39 46.94 4.85
170 171 1.886777 GCAGAAGAGATCGCTGCCC 60.887 63.158 16.76 4.35 46.94 5.36
171 172 1.227497 CAGAAGAGATCGCTGCCCC 60.227 63.158 0.00 0.00 0.00 5.80
172 173 1.687146 AGAAGAGATCGCTGCCCCA 60.687 57.895 0.00 0.00 0.00 4.96
173 174 1.053264 AGAAGAGATCGCTGCCCCAT 61.053 55.000 0.00 0.00 0.00 4.00
174 175 0.602372 GAAGAGATCGCTGCCCCATC 60.602 60.000 0.00 0.00 0.00 3.51
175 176 1.340399 AAGAGATCGCTGCCCCATCA 61.340 55.000 0.00 0.00 0.00 3.07
176 177 1.301558 GAGATCGCTGCCCCATCAG 60.302 63.158 0.00 0.00 37.15 2.90
177 178 1.752358 GAGATCGCTGCCCCATCAGA 61.752 60.000 0.00 0.00 36.19 3.27
178 179 1.146930 GATCGCTGCCCCATCAGAA 59.853 57.895 0.00 0.00 36.19 3.02
179 180 0.464373 GATCGCTGCCCCATCAGAAA 60.464 55.000 0.00 0.00 36.19 2.52
180 181 0.465097 ATCGCTGCCCCATCAGAAAG 60.465 55.000 0.00 0.00 36.19 2.62
181 182 1.078214 CGCTGCCCCATCAGAAAGA 60.078 57.895 0.00 0.00 36.19 2.52
182 183 1.094073 CGCTGCCCCATCAGAAAGAG 61.094 60.000 0.00 0.00 36.19 2.85
183 184 0.254178 GCTGCCCCATCAGAAAGAGA 59.746 55.000 0.00 0.00 36.19 3.10
184 185 1.340405 GCTGCCCCATCAGAAAGAGAA 60.340 52.381 0.00 0.00 36.19 2.87
185 186 2.641305 CTGCCCCATCAGAAAGAGAAG 58.359 52.381 0.00 0.00 36.19 2.85
186 187 2.238144 CTGCCCCATCAGAAAGAGAAGA 59.762 50.000 0.00 0.00 36.19 2.87
187 188 2.644299 TGCCCCATCAGAAAGAGAAGAA 59.356 45.455 0.00 0.00 0.00 2.52
188 189 3.074390 TGCCCCATCAGAAAGAGAAGAAA 59.926 43.478 0.00 0.00 0.00 2.52
189 190 4.082125 GCCCCATCAGAAAGAGAAGAAAA 58.918 43.478 0.00 0.00 0.00 2.29
190 191 4.157472 GCCCCATCAGAAAGAGAAGAAAAG 59.843 45.833 0.00 0.00 0.00 2.27
191 192 4.157472 CCCCATCAGAAAGAGAAGAAAAGC 59.843 45.833 0.00 0.00 0.00 3.51
192 193 4.763793 CCCATCAGAAAGAGAAGAAAAGCA 59.236 41.667 0.00 0.00 0.00 3.91
193 194 5.106237 CCCATCAGAAAGAGAAGAAAAGCAG 60.106 44.000 0.00 0.00 0.00 4.24
194 195 5.704515 CCATCAGAAAGAGAAGAAAAGCAGA 59.295 40.000 0.00 0.00 0.00 4.26
195 196 6.374894 CCATCAGAAAGAGAAGAAAAGCAGAT 59.625 38.462 0.00 0.00 0.00 2.90
196 197 6.798315 TCAGAAAGAGAAGAAAAGCAGATG 57.202 37.500 0.00 0.00 0.00 2.90
197 198 6.294473 TCAGAAAGAGAAGAAAAGCAGATGT 58.706 36.000 0.00 0.00 0.00 3.06
198 199 7.445121 TCAGAAAGAGAAGAAAAGCAGATGTA 58.555 34.615 0.00 0.00 0.00 2.29
199 200 7.601886 TCAGAAAGAGAAGAAAAGCAGATGTAG 59.398 37.037 0.00 0.00 0.00 2.74
200 201 7.601886 CAGAAAGAGAAGAAAAGCAGATGTAGA 59.398 37.037 0.00 0.00 0.00 2.59
201 202 7.818930 AGAAAGAGAAGAAAAGCAGATGTAGAG 59.181 37.037 0.00 0.00 0.00 2.43
202 203 6.849085 AGAGAAGAAAAGCAGATGTAGAGA 57.151 37.500 0.00 0.00 0.00 3.10
203 204 6.866480 AGAGAAGAAAAGCAGATGTAGAGAG 58.134 40.000 0.00 0.00 0.00 3.20
204 205 5.976458 AGAAGAAAAGCAGATGTAGAGAGG 58.024 41.667 0.00 0.00 0.00 3.69
205 206 4.751767 AGAAAAGCAGATGTAGAGAGGG 57.248 45.455 0.00 0.00 0.00 4.30
206 207 2.998316 AAAGCAGATGTAGAGAGGGC 57.002 50.000 0.00 0.00 0.00 5.19
207 208 0.749649 AAGCAGATGTAGAGAGGGCG 59.250 55.000 0.00 0.00 0.00 6.13
208 209 1.300542 GCAGATGTAGAGAGGGCGC 60.301 63.158 0.00 0.00 0.00 6.53
209 210 1.743321 GCAGATGTAGAGAGGGCGCT 61.743 60.000 7.64 1.38 0.00 5.92
210 211 0.031857 CAGATGTAGAGAGGGCGCTG 59.968 60.000 8.56 0.00 0.00 5.18
211 212 1.300542 GATGTAGAGAGGGCGCTGC 60.301 63.158 8.56 0.00 0.00 5.25
212 213 3.144120 ATGTAGAGAGGGCGCTGCG 62.144 63.158 19.17 19.17 29.60 5.18
213 214 3.827898 GTAGAGAGGGCGCTGCGT 61.828 66.667 24.04 3.19 0.00 5.24
214 215 3.826754 TAGAGAGGGCGCTGCGTG 61.827 66.667 24.04 0.00 0.00 5.34
221 222 3.499737 GGCGCTGCGTGCATAGTT 61.500 61.111 24.04 0.00 41.25 2.24
222 223 2.276868 GCGCTGCGTGCATAGTTG 60.277 61.111 24.04 0.00 43.06 3.16
223 224 2.739704 GCGCTGCGTGCATAGTTGA 61.740 57.895 24.04 0.00 43.06 3.18
224 225 1.787215 CGCTGCGTGCATAGTTGAA 59.213 52.632 14.93 0.00 43.06 2.69
225 226 0.165727 CGCTGCGTGCATAGTTGAAA 59.834 50.000 14.93 0.00 43.06 2.69
226 227 1.787989 CGCTGCGTGCATAGTTGAAAG 60.788 52.381 14.93 0.00 43.06 2.62
227 228 1.887320 CTGCGTGCATAGTTGAAAGC 58.113 50.000 0.00 0.00 36.51 3.51
228 229 1.197492 CTGCGTGCATAGTTGAAAGCA 59.803 47.619 0.00 0.00 42.72 3.91
229 230 1.197492 TGCGTGCATAGTTGAAAGCAG 59.803 47.619 0.00 0.00 40.46 4.24
230 231 1.466360 GCGTGCATAGTTGAAAGCAGG 60.466 52.381 0.00 0.00 43.45 4.85
231 232 2.076100 CGTGCATAGTTGAAAGCAGGA 58.924 47.619 0.00 0.00 43.32 3.86
232 233 2.483877 CGTGCATAGTTGAAAGCAGGAA 59.516 45.455 0.00 0.00 43.32 3.36
233 234 3.425359 CGTGCATAGTTGAAAGCAGGAAG 60.425 47.826 0.00 0.00 43.32 3.46
234 235 3.753272 GTGCATAGTTGAAAGCAGGAAGA 59.247 43.478 0.00 0.00 37.72 2.87
235 236 4.216257 GTGCATAGTTGAAAGCAGGAAGAA 59.784 41.667 0.00 0.00 37.72 2.52
236 237 4.456911 TGCATAGTTGAAAGCAGGAAGAAG 59.543 41.667 0.00 0.00 32.48 2.85
237 238 4.697352 GCATAGTTGAAAGCAGGAAGAAGA 59.303 41.667 0.00 0.00 0.00 2.87
238 239 5.356470 GCATAGTTGAAAGCAGGAAGAAGAT 59.644 40.000 0.00 0.00 0.00 2.40
239 240 6.677431 GCATAGTTGAAAGCAGGAAGAAGATG 60.677 42.308 0.00 0.00 0.00 2.90
240 241 4.978099 AGTTGAAAGCAGGAAGAAGATGA 58.022 39.130 0.00 0.00 0.00 2.92
241 242 5.568392 AGTTGAAAGCAGGAAGAAGATGAT 58.432 37.500 0.00 0.00 0.00 2.45
242 243 5.415077 AGTTGAAAGCAGGAAGAAGATGATG 59.585 40.000 0.00 0.00 0.00 3.07
243 244 4.914983 TGAAAGCAGGAAGAAGATGATGT 58.085 39.130 0.00 0.00 0.00 3.06
244 245 5.319453 TGAAAGCAGGAAGAAGATGATGTT 58.681 37.500 0.00 0.00 0.00 2.71
245 246 5.182570 TGAAAGCAGGAAGAAGATGATGTTG 59.817 40.000 0.00 0.00 0.00 3.33
246 247 3.618351 AGCAGGAAGAAGATGATGTTGG 58.382 45.455 0.00 0.00 0.00 3.77
247 248 2.686915 GCAGGAAGAAGATGATGTTGGG 59.313 50.000 0.00 0.00 0.00 4.12
248 249 3.285484 CAGGAAGAAGATGATGTTGGGG 58.715 50.000 0.00 0.00 0.00 4.96
249 250 2.027385 GGAAGAAGATGATGTTGGGGC 58.973 52.381 0.00 0.00 0.00 5.80
250 251 2.621407 GGAAGAAGATGATGTTGGGGCA 60.621 50.000 0.00 0.00 0.00 5.36
251 252 2.134789 AGAAGATGATGTTGGGGCAC 57.865 50.000 0.00 0.00 0.00 5.01
252 253 1.355381 AGAAGATGATGTTGGGGCACA 59.645 47.619 0.00 0.00 0.00 4.57
253 254 2.024655 AGAAGATGATGTTGGGGCACAT 60.025 45.455 0.00 0.00 40.25 3.21
254 255 3.202818 AGAAGATGATGTTGGGGCACATA 59.797 43.478 0.00 0.00 37.52 2.29
255 256 3.219176 AGATGATGTTGGGGCACATAG 57.781 47.619 0.00 0.00 37.52 2.23
256 257 2.511218 AGATGATGTTGGGGCACATAGT 59.489 45.455 0.00 0.00 37.52 2.12
257 258 3.716353 AGATGATGTTGGGGCACATAGTA 59.284 43.478 0.00 0.00 37.52 1.82
258 259 3.275617 TGATGTTGGGGCACATAGTAC 57.724 47.619 0.00 0.00 37.52 2.73
259 260 2.843730 TGATGTTGGGGCACATAGTACT 59.156 45.455 0.00 0.00 37.52 2.73
260 261 2.779755 TGTTGGGGCACATAGTACTG 57.220 50.000 5.39 0.00 0.00 2.74
261 262 1.982226 TGTTGGGGCACATAGTACTGT 59.018 47.619 5.39 0.00 0.00 3.55
262 263 2.373836 TGTTGGGGCACATAGTACTGTT 59.626 45.455 5.39 0.00 0.00 3.16
263 264 2.747446 GTTGGGGCACATAGTACTGTTG 59.253 50.000 5.39 5.88 0.00 3.33
264 265 1.280710 TGGGGCACATAGTACTGTTGG 59.719 52.381 5.39 0.00 0.00 3.77
265 266 1.557832 GGGGCACATAGTACTGTTGGA 59.442 52.381 5.39 0.00 0.00 3.53
266 267 2.420129 GGGGCACATAGTACTGTTGGAG 60.420 54.545 5.39 2.43 0.00 3.86
267 268 2.236395 GGGCACATAGTACTGTTGGAGT 59.764 50.000 5.39 0.00 38.88 3.85
268 269 3.522553 GGCACATAGTACTGTTGGAGTC 58.477 50.000 5.39 0.00 35.96 3.36
269 270 3.056107 GGCACATAGTACTGTTGGAGTCA 60.056 47.826 5.39 0.00 35.96 3.41
270 271 4.177026 GCACATAGTACTGTTGGAGTCAG 58.823 47.826 5.39 0.00 35.96 3.51
271 272 4.177026 CACATAGTACTGTTGGAGTCAGC 58.823 47.826 5.39 0.00 35.96 4.26
272 273 3.195825 ACATAGTACTGTTGGAGTCAGCC 59.804 47.826 5.39 0.00 35.96 4.85
273 274 1.717032 AGTACTGTTGGAGTCAGCCA 58.283 50.000 0.00 0.00 35.96 4.75
274 275 1.344763 AGTACTGTTGGAGTCAGCCAC 59.655 52.381 0.00 0.00 37.75 5.01
275 276 1.070134 GTACTGTTGGAGTCAGCCACA 59.930 52.381 0.00 0.00 37.75 4.17
276 277 0.107456 ACTGTTGGAGTCAGCCACAG 59.893 55.000 0.00 0.00 40.14 3.66
277 278 0.604780 CTGTTGGAGTCAGCCACAGG 60.605 60.000 0.00 0.00 37.75 4.00
299 300 9.723601 ACAGGCATTGTGTGAAAATAATTTAAT 57.276 25.926 0.00 0.00 38.99 1.40
300 301 9.976255 CAGGCATTGTGTGAAAATAATTTAATG 57.024 29.630 0.00 0.00 0.00 1.90
301 302 9.165035 AGGCATTGTGTGAAAATAATTTAATGG 57.835 29.630 0.00 0.00 0.00 3.16
302 303 8.397148 GGCATTGTGTGAAAATAATTTAATGGG 58.603 33.333 0.00 0.00 0.00 4.00
303 304 8.945057 GCATTGTGTGAAAATAATTTAATGGGT 58.055 29.630 0.00 0.00 0.00 4.51
305 306 7.897575 TGTGTGAAAATAATTTAATGGGTGC 57.102 32.000 0.00 0.00 0.00 5.01
306 307 6.876257 TGTGTGAAAATAATTTAATGGGTGCC 59.124 34.615 0.00 0.00 0.00 5.01
307 308 7.102993 GTGTGAAAATAATTTAATGGGTGCCT 58.897 34.615 0.00 0.00 0.00 4.75
308 309 7.277760 GTGTGAAAATAATTTAATGGGTGCCTC 59.722 37.037 0.00 0.00 0.00 4.70
309 310 7.038729 TGTGAAAATAATTTAATGGGTGCCTCA 60.039 33.333 0.00 0.00 0.00 3.86
310 311 7.986889 GTGAAAATAATTTAATGGGTGCCTCAT 59.013 33.333 0.00 0.00 0.00 2.90
311 312 8.547173 TGAAAATAATTTAATGGGTGCCTCATT 58.453 29.630 5.73 5.73 38.29 2.57
312 313 9.394767 GAAAATAATTTAATGGGTGCCTCATTT 57.605 29.630 5.73 0.00 36.40 2.32
313 314 9.752228 AAAATAATTTAATGGGTGCCTCATTTT 57.248 25.926 5.73 0.00 36.40 1.82
314 315 9.752228 AAATAATTTAATGGGTGCCTCATTTTT 57.248 25.926 5.73 0.00 36.40 1.94
315 316 8.962884 ATAATTTAATGGGTGCCTCATTTTTC 57.037 30.769 5.73 0.00 36.40 2.29
316 317 4.817318 TTAATGGGTGCCTCATTTTTCC 57.183 40.909 5.73 0.00 36.40 3.13
317 318 2.629017 ATGGGTGCCTCATTTTTCCT 57.371 45.000 0.00 0.00 0.00 3.36
318 319 1.923356 TGGGTGCCTCATTTTTCCTC 58.077 50.000 0.00 0.00 0.00 3.71
319 320 1.428912 TGGGTGCCTCATTTTTCCTCT 59.571 47.619 0.00 0.00 0.00 3.69
320 321 1.821136 GGGTGCCTCATTTTTCCTCTG 59.179 52.381 0.00 0.00 0.00 3.35
321 322 2.519013 GGTGCCTCATTTTTCCTCTGT 58.481 47.619 0.00 0.00 0.00 3.41
322 323 2.489722 GGTGCCTCATTTTTCCTCTGTC 59.510 50.000 0.00 0.00 0.00 3.51
323 324 3.416156 GTGCCTCATTTTTCCTCTGTCT 58.584 45.455 0.00 0.00 0.00 3.41
324 325 4.565652 GGTGCCTCATTTTTCCTCTGTCTA 60.566 45.833 0.00 0.00 0.00 2.59
325 326 4.633565 GTGCCTCATTTTTCCTCTGTCTAG 59.366 45.833 0.00 0.00 0.00 2.43
326 327 3.625313 GCCTCATTTTTCCTCTGTCTAGC 59.375 47.826 0.00 0.00 0.00 3.42
327 328 4.625083 GCCTCATTTTTCCTCTGTCTAGCT 60.625 45.833 0.00 0.00 0.00 3.32
328 329 4.874966 CCTCATTTTTCCTCTGTCTAGCTG 59.125 45.833 0.00 0.00 0.00 4.24
329 330 4.836825 TCATTTTTCCTCTGTCTAGCTGG 58.163 43.478 0.00 0.00 0.00 4.85
330 331 4.532126 TCATTTTTCCTCTGTCTAGCTGGA 59.468 41.667 0.00 0.00 0.00 3.86
331 332 5.190528 TCATTTTTCCTCTGTCTAGCTGGAT 59.809 40.000 2.00 0.00 0.00 3.41
332 333 4.478206 TTTTCCTCTGTCTAGCTGGATG 57.522 45.455 2.00 0.00 0.00 3.51
333 334 2.079170 TCCTCTGTCTAGCTGGATGG 57.921 55.000 2.00 4.23 0.00 3.51
334 335 1.047002 CCTCTGTCTAGCTGGATGGG 58.953 60.000 2.00 0.00 0.00 4.00
335 336 0.392336 CTCTGTCTAGCTGGATGGGC 59.608 60.000 2.00 0.00 0.00 5.36
336 337 0.325577 TCTGTCTAGCTGGATGGGCA 60.326 55.000 2.00 0.00 0.00 5.36
337 338 0.106335 CTGTCTAGCTGGATGGGCAG 59.894 60.000 2.00 1.89 0.00 4.85
338 339 1.227793 GTCTAGCTGGATGGGCAGC 60.228 63.158 2.00 0.00 44.20 5.25
339 340 1.690283 TCTAGCTGGATGGGCAGCA 60.690 57.895 0.00 0.00 46.10 4.41
340 341 1.058428 TCTAGCTGGATGGGCAGCAT 61.058 55.000 0.00 0.00 46.10 3.79
341 342 0.689055 CTAGCTGGATGGGCAGCATA 59.311 55.000 0.00 0.00 46.10 3.14
342 343 1.281287 CTAGCTGGATGGGCAGCATAT 59.719 52.381 0.00 0.00 46.10 1.78
343 344 0.481567 AGCTGGATGGGCAGCATATT 59.518 50.000 0.00 0.00 46.10 1.28
344 345 0.601558 GCTGGATGGGCAGCATATTG 59.398 55.000 0.00 0.00 43.40 1.90
345 346 1.820483 GCTGGATGGGCAGCATATTGA 60.820 52.381 0.00 0.00 43.40 2.57
346 347 1.884579 CTGGATGGGCAGCATATTGAC 59.115 52.381 0.00 0.00 0.00 3.18
347 348 1.214923 TGGATGGGCAGCATATTGACA 59.785 47.619 0.00 0.00 0.00 3.58
348 349 1.884579 GGATGGGCAGCATATTGACAG 59.115 52.381 0.00 0.00 0.00 3.51
349 350 1.884579 GATGGGCAGCATATTGACAGG 59.115 52.381 0.00 0.00 0.00 4.00
350 351 0.625316 TGGGCAGCATATTGACAGGT 59.375 50.000 0.00 0.00 0.00 4.00
351 352 1.312815 GGGCAGCATATTGACAGGTC 58.687 55.000 0.00 0.00 0.00 3.85
352 353 0.940126 GGCAGCATATTGACAGGTCG 59.060 55.000 0.00 0.00 0.00 4.79
353 354 0.940126 GCAGCATATTGACAGGTCGG 59.060 55.000 0.00 0.00 0.00 4.79
354 355 1.743772 GCAGCATATTGACAGGTCGGT 60.744 52.381 0.00 0.00 0.00 4.69
355 356 2.632377 CAGCATATTGACAGGTCGGTT 58.368 47.619 0.00 0.00 0.00 4.44
356 357 3.792401 CAGCATATTGACAGGTCGGTTA 58.208 45.455 0.00 0.00 0.00 2.85
357 358 4.380531 CAGCATATTGACAGGTCGGTTAT 58.619 43.478 0.00 0.00 0.00 1.89
358 359 4.212004 CAGCATATTGACAGGTCGGTTATG 59.788 45.833 9.73 9.73 0.00 1.90
359 360 3.058914 GCATATTGACAGGTCGGTTATGC 60.059 47.826 17.42 17.42 37.26 3.14
360 361 1.651987 ATTGACAGGTCGGTTATGCG 58.348 50.000 0.00 0.00 0.00 4.73
361 362 0.604073 TTGACAGGTCGGTTATGCGA 59.396 50.000 0.00 0.00 0.00 5.10
362 363 0.821517 TGACAGGTCGGTTATGCGAT 59.178 50.000 0.00 0.00 0.00 4.58
363 364 1.202371 TGACAGGTCGGTTATGCGATC 60.202 52.381 0.00 0.00 0.00 3.69
364 365 1.067212 GACAGGTCGGTTATGCGATCT 59.933 52.381 0.00 0.00 0.00 2.75
365 366 2.292569 GACAGGTCGGTTATGCGATCTA 59.707 50.000 0.00 0.00 0.00 1.98
366 367 2.034305 ACAGGTCGGTTATGCGATCTAC 59.966 50.000 0.00 0.00 0.00 2.59
367 368 2.293677 CAGGTCGGTTATGCGATCTACT 59.706 50.000 0.00 0.00 0.00 2.57
368 369 2.553172 AGGTCGGTTATGCGATCTACTC 59.447 50.000 0.00 0.00 0.00 2.59
369 370 2.351544 GGTCGGTTATGCGATCTACTCC 60.352 54.545 0.00 0.00 0.00 3.85
370 371 1.884579 TCGGTTATGCGATCTACTCCC 59.115 52.381 0.00 0.00 0.00 4.30
371 372 1.887198 CGGTTATGCGATCTACTCCCT 59.113 52.381 0.00 0.00 0.00 4.20
372 373 2.095161 CGGTTATGCGATCTACTCCCTC 60.095 54.545 0.00 0.00 0.00 4.30
373 374 3.158676 GGTTATGCGATCTACTCCCTCT 58.841 50.000 0.00 0.00 0.00 3.69
374 375 3.057174 GGTTATGCGATCTACTCCCTCTG 60.057 52.174 0.00 0.00 0.00 3.35
375 376 2.373335 ATGCGATCTACTCCCTCTGT 57.627 50.000 0.00 0.00 0.00 3.41
376 377 2.145397 TGCGATCTACTCCCTCTGTT 57.855 50.000 0.00 0.00 0.00 3.16
377 378 2.025155 TGCGATCTACTCCCTCTGTTC 58.975 52.381 0.00 0.00 0.00 3.18
378 379 1.338655 GCGATCTACTCCCTCTGTTCC 59.661 57.143 0.00 0.00 0.00 3.62
379 380 2.938838 CGATCTACTCCCTCTGTTCCT 58.061 52.381 0.00 0.00 0.00 3.36
380 381 3.748027 GCGATCTACTCCCTCTGTTCCTA 60.748 52.174 0.00 0.00 0.00 2.94
381 382 4.462133 CGATCTACTCCCTCTGTTCCTAA 58.538 47.826 0.00 0.00 0.00 2.69
382 383 4.888239 CGATCTACTCCCTCTGTTCCTAAA 59.112 45.833 0.00 0.00 0.00 1.85
383 384 5.536916 CGATCTACTCCCTCTGTTCCTAAAT 59.463 44.000 0.00 0.00 0.00 1.40
384 385 6.715718 CGATCTACTCCCTCTGTTCCTAAATA 59.284 42.308 0.00 0.00 0.00 1.40
385 386 7.394923 CGATCTACTCCCTCTGTTCCTAAATAT 59.605 40.741 0.00 0.00 0.00 1.28
386 387 9.756571 GATCTACTCCCTCTGTTCCTAAATATA 57.243 37.037 0.00 0.00 0.00 0.86
388 389 9.947189 TCTACTCCCTCTGTTCCTAAATATAAA 57.053 33.333 0.00 0.00 0.00 1.40
391 392 8.832735 ACTCCCTCTGTTCCTAAATATAAAACA 58.167 33.333 0.00 0.00 0.00 2.83
392 393 9.853177 CTCCCTCTGTTCCTAAATATAAAACAT 57.147 33.333 0.00 0.00 0.00 2.71
435 436 9.330063 TGGACTATATAAGAAGCAAAATGAGTG 57.670 33.333 0.00 0.00 0.00 3.51
436 437 9.547753 GGACTATATAAGAAGCAAAATGAGTGA 57.452 33.333 0.00 0.00 0.00 3.41
488 489 6.882610 ACATCCGTATGTAGTCCGTATTAA 57.117 37.500 0.00 0.00 44.66 1.40
489 490 7.458409 ACATCCGTATGTAGTCCGTATTAAT 57.542 36.000 0.00 0.00 44.66 1.40
490 491 7.889469 ACATCCGTATGTAGTCCGTATTAATT 58.111 34.615 0.00 0.00 44.66 1.40
491 492 9.013229 ACATCCGTATGTAGTCCGTATTAATTA 57.987 33.333 0.00 0.00 44.66 1.40
524 525 7.745620 AATGCTTATATTTAGAAACGGAGGG 57.254 36.000 0.00 0.00 0.00 4.30
525 526 6.488769 TGCTTATATTTAGAAACGGAGGGA 57.511 37.500 0.00 0.00 0.00 4.20
526 527 6.522054 TGCTTATATTTAGAAACGGAGGGAG 58.478 40.000 0.00 0.00 0.00 4.30
527 528 6.099269 TGCTTATATTTAGAAACGGAGGGAGT 59.901 38.462 0.00 0.00 0.00 3.85
528 529 7.288389 TGCTTATATTTAGAAACGGAGGGAGTA 59.712 37.037 0.00 0.00 0.00 2.59
529 530 8.312564 GCTTATATTTAGAAACGGAGGGAGTAT 58.687 37.037 0.00 0.00 0.00 2.12
537 538 9.822185 TTAGAAACGGAGGGAGTATTAAATAAC 57.178 33.333 0.00 0.00 0.00 1.89
538 539 6.982724 AGAAACGGAGGGAGTATTAAATAACG 59.017 38.462 0.00 0.00 0.00 3.18
539 540 5.205759 ACGGAGGGAGTATTAAATAACGG 57.794 43.478 0.00 0.00 0.00 4.44
540 541 4.651045 ACGGAGGGAGTATTAAATAACGGT 59.349 41.667 0.00 0.00 0.00 4.83
541 542 5.833131 ACGGAGGGAGTATTAAATAACGGTA 59.167 40.000 0.00 0.00 0.00 4.02
542 543 6.494835 ACGGAGGGAGTATTAAATAACGGTAT 59.505 38.462 0.00 0.00 0.00 2.73
543 544 7.015584 ACGGAGGGAGTATTAAATAACGGTATT 59.984 37.037 0.00 0.00 0.00 1.89
544 545 8.522830 CGGAGGGAGTATTAAATAACGGTATTA 58.477 37.037 6.06 0.00 29.41 0.98
561 562 8.757982 ACGGTATTAAAGACTTGGTATCTAGA 57.242 34.615 0.00 0.00 0.00 2.43
562 563 9.364653 ACGGTATTAAAGACTTGGTATCTAGAT 57.635 33.333 10.73 10.73 0.00 1.98
593 594 6.853279 AAAAATTCTGTGAATAATGACGCG 57.147 33.333 3.53 3.53 0.00 6.01
594 595 3.592381 ATTCTGTGAATAATGACGCGC 57.408 42.857 5.73 0.00 0.00 6.86
605 606 8.985694 GTGAATAATGACGCGCATAAATAATAC 58.014 33.333 5.73 2.54 35.78 1.89
606 607 8.713271 TGAATAATGACGCGCATAAATAATACA 58.287 29.630 5.73 2.47 35.78 2.29
754 761 0.889186 ACCGCTCGAATTGGCAAACT 60.889 50.000 3.01 0.00 0.00 2.66
832 839 2.052941 CTCGATCGCGACGACTCC 60.053 66.667 23.22 5.36 42.51 3.85
854 861 2.216898 GCTGTCCTGCATATTCTCCAC 58.783 52.381 0.00 0.00 0.00 4.02
878 885 5.512788 CGTGGTTCACTGATTTATTGCATTC 59.487 40.000 0.00 0.00 31.34 2.67
883 890 5.653507 TCACTGATTTATTGCATTCTTGGC 58.346 37.500 0.00 0.00 0.00 4.52
889 896 6.314152 TGATTTATTGCATTCTTGGCATTGTG 59.686 34.615 0.00 0.00 41.58 3.33
1049 1056 4.451150 GGACGGCGTGATGGAGCA 62.451 66.667 21.19 0.00 34.54 4.26
1090 1097 2.668212 GCAAGGCGCTGGTGTACA 60.668 61.111 7.64 0.00 37.77 2.90
1199 1206 3.368571 GGTGCAGCTTCACAGGCC 61.369 66.667 18.29 0.00 38.66 5.19
1224 1231 2.418910 CGGCCTCGACCTCATCACT 61.419 63.158 0.00 0.00 39.00 3.41
1358 1365 1.766496 AGCCGCCCAATTAGTAAGCTA 59.234 47.619 0.00 0.00 0.00 3.32
1391 1398 7.651304 GCATATGTAGCATGAGTAAGCCTATAG 59.349 40.741 4.29 0.00 0.00 1.31
1427 1434 0.039437 TCTCTGACGACTTCGCCAAC 60.039 55.000 0.00 0.00 44.43 3.77
1428 1435 0.039074 CTCTGACGACTTCGCCAACT 60.039 55.000 0.00 0.00 44.43 3.16
1439 1446 4.385825 ACTTCGCCAACTTCAAGATGTTA 58.614 39.130 0.00 0.00 0.00 2.41
1448 1455 6.761242 CCAACTTCAAGATGTTATCCGTATCA 59.239 38.462 0.00 0.00 0.00 2.15
1462 1469 4.720046 TCCGTATCAGCTCAGTATCTCTT 58.280 43.478 0.00 0.00 0.00 2.85
1491 1506 3.121738 TGTATCGGCTCAGTATCTCGA 57.878 47.619 0.00 0.00 0.00 4.04
1522 1537 3.412237 AAAGGTAAGGTGTGTGCGTAT 57.588 42.857 0.00 0.00 0.00 3.06
1528 1543 4.632688 GGTAAGGTGTGTGCGTATGTTATT 59.367 41.667 0.00 0.00 0.00 1.40
1531 1546 3.004171 GGTGTGTGCGTATGTTATTGGA 58.996 45.455 0.00 0.00 0.00 3.53
1542 1557 7.042119 TGCGTATGTTATTGGATTGAGTGTATG 60.042 37.037 0.00 0.00 0.00 2.39
1550 1565 5.612725 TGGATTGAGTGTATGTGAGCATA 57.387 39.130 0.00 0.00 36.58 3.14
1560 1575 5.985530 GTGTATGTGAGCATATGAGCTTGTA 59.014 40.000 6.97 0.00 46.75 2.41
1628 1643 4.951715 AGGAAACGTTAAACCCTTTGTCTT 59.048 37.500 0.00 0.00 0.00 3.01
1629 1644 6.121590 AGGAAACGTTAAACCCTTTGTCTTA 58.878 36.000 0.00 0.00 0.00 2.10
1653 1668 5.656859 AGGCCGCATGTGTATATATAGAAGA 59.343 40.000 5.38 0.00 0.00 2.87
1695 1710 6.995091 AGCTTGAAATATCGCTAGGATTCTTT 59.005 34.615 0.00 0.00 36.55 2.52
1707 1722 6.925718 CGCTAGGATTCTTTCAGATTACATCA 59.074 38.462 0.00 0.00 0.00 3.07
1713 1728 8.825745 GGATTCTTTCAGATTACATCAAGAGAC 58.174 37.037 0.00 0.00 0.00 3.36
1725 1740 9.896645 ATTACATCAAGAGACATTACAACTCAT 57.103 29.630 0.00 0.00 33.69 2.90
1737 1752 5.576563 TTACAACTCATGGGAGGAAGAAA 57.423 39.130 0.00 0.00 45.81 2.52
1757 1772 6.877236 AGAAAAGAGCAGAAGAAGAGATAGG 58.123 40.000 0.00 0.00 0.00 2.57
1758 1773 6.440328 AGAAAAGAGCAGAAGAAGAGATAGGT 59.560 38.462 0.00 0.00 0.00 3.08
1759 1774 5.852282 AAGAGCAGAAGAAGAGATAGGTC 57.148 43.478 0.00 0.00 0.00 3.85
1760 1775 5.129368 AGAGCAGAAGAAGAGATAGGTCT 57.871 43.478 0.00 0.00 37.42 3.85
1761 1776 6.260700 AGAGCAGAAGAAGAGATAGGTCTA 57.739 41.667 0.00 0.00 33.97 2.59
1762 1777 6.062095 AGAGCAGAAGAAGAGATAGGTCTAC 58.938 44.000 0.00 0.00 33.97 2.59
1763 1778 5.761205 AGCAGAAGAAGAGATAGGTCTACA 58.239 41.667 0.00 0.00 33.97 2.74
1783 1798 2.209838 ATAGGTCGACAATGTCTGCG 57.790 50.000 18.91 0.00 0.00 5.18
1817 1832 1.409241 CCTAAGCTCCACCACATGCAT 60.409 52.381 0.00 0.00 0.00 3.96
1924 1956 1.316651 GTTCCTAGGACGCGGACTAT 58.683 55.000 12.22 0.34 0.00 2.12
1930 1962 1.109920 AGGACGCGGACTATGAGCAT 61.110 55.000 12.47 0.00 0.00 3.79
1934 1966 1.278172 CGCGGACTATGAGCATTCGG 61.278 60.000 0.00 0.00 0.00 4.30
1961 1993 1.405256 CGCTCACTGGAATCTCAGCTT 60.405 52.381 0.00 0.00 38.26 3.74
1965 1997 2.235650 TCACTGGAATCTCAGCTTCTGG 59.764 50.000 0.00 0.00 38.26 3.86
1986 2019 4.202295 TGGACTGATGTCTAGGATCAATGC 60.202 45.833 0.00 3.75 42.54 3.56
1989 2022 3.721035 TGATGTCTAGGATCAATGCGTG 58.279 45.455 0.00 0.00 0.00 5.34
2002 2035 2.830772 ATGCGTGATTGGACGAAATG 57.169 45.000 0.00 0.00 42.10 2.32
2005 2038 2.159430 TGCGTGATTGGACGAAATGAAG 59.841 45.455 0.00 0.00 42.10 3.02
2010 2043 4.911610 GTGATTGGACGAAATGAAGTGTTG 59.088 41.667 0.00 0.00 0.00 3.33
2021 2054 7.971168 ACGAAATGAAGTGTTGTTGTTGAATAA 59.029 29.630 0.00 0.00 0.00 1.40
2048 2081 1.135139 CAGCGTAGAGTGGCATAGTGT 59.865 52.381 0.00 0.00 0.00 3.55
2084 2117 6.910972 GGCGACAATAAATTAGGACTAAAAGC 59.089 38.462 0.00 0.00 0.00 3.51
2129 2164 3.627577 AGTTGGGCATTTATTAGACTGCG 59.372 43.478 0.00 0.00 35.47 5.18
2142 2177 1.407258 AGACTGCGAGGACTATTGAGC 59.593 52.381 0.00 0.00 0.00 4.26
2143 2178 0.461961 ACTGCGAGGACTATTGAGCC 59.538 55.000 0.00 0.00 0.00 4.70
2144 2179 0.596083 CTGCGAGGACTATTGAGCCG 60.596 60.000 0.00 0.00 0.00 5.52
2160 2195 0.101759 GCCGCCGATACTTGTAGTGA 59.898 55.000 0.00 0.00 0.00 3.41
2170 2205 2.124903 ACTTGTAGTGAAACACGCTCG 58.875 47.619 0.00 0.00 41.43 5.03
2182 2217 2.034879 ACGCTCGCCATGGTTCAAG 61.035 57.895 14.67 7.00 0.00 3.02
2215 2250 4.022849 ACTTGGCACTAGTCTTGCATTTTC 60.023 41.667 6.20 0.00 42.12 2.29
2238 2273 5.719085 TCCTGCATTTATTTTAGCCTTTCCA 59.281 36.000 0.00 0.00 0.00 3.53
2244 2279 7.254084 GCATTTATTTTAGCCTTTCCAACGATG 60.254 37.037 0.00 0.00 0.00 3.84
2251 2286 3.383185 AGCCTTTCCAACGATGTTTTCAA 59.617 39.130 0.00 0.00 0.00 2.69
2258 2293 5.304778 TCCAACGATGTTTTCAATGAGAGA 58.695 37.500 0.00 0.00 0.00 3.10
2263 2298 5.119279 ACGATGTTTTCAATGAGAGAAGACG 59.881 40.000 0.00 0.00 34.03 4.18
2312 2347 6.639563 TGGTGATTTCGTCAATCTCAAGATA 58.360 36.000 10.22 0.00 41.91 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.859427 CAGTTCACAAAACCAATATGTCATATT 57.141 29.630 11.62 11.62 35.92 1.28
15 16 9.241919 TCAGTTCACAAAACCAATATGTCATAT 57.758 29.630 0.00 0.00 0.00 1.78
16 17 8.628630 TCAGTTCACAAAACCAATATGTCATA 57.371 30.769 0.00 0.00 0.00 2.15
17 18 7.523293 TCAGTTCACAAAACCAATATGTCAT 57.477 32.000 0.00 0.00 0.00 3.06
18 19 6.951062 TCAGTTCACAAAACCAATATGTCA 57.049 33.333 0.00 0.00 0.00 3.58
19 20 7.820648 AGATCAGTTCACAAAACCAATATGTC 58.179 34.615 0.00 0.00 0.00 3.06
20 21 7.765695 AGATCAGTTCACAAAACCAATATGT 57.234 32.000 0.00 0.00 0.00 2.29
21 22 9.778993 CTTAGATCAGTTCACAAAACCAATATG 57.221 33.333 0.00 0.00 0.00 1.78
22 23 8.960591 CCTTAGATCAGTTCACAAAACCAATAT 58.039 33.333 0.00 0.00 0.00 1.28
23 24 7.393234 CCCTTAGATCAGTTCACAAAACCAATA 59.607 37.037 0.00 0.00 0.00 1.90
24 25 6.209391 CCCTTAGATCAGTTCACAAAACCAAT 59.791 38.462 0.00 0.00 0.00 3.16
25 26 5.534654 CCCTTAGATCAGTTCACAAAACCAA 59.465 40.000 0.00 0.00 0.00 3.67
26 27 5.070001 CCCTTAGATCAGTTCACAAAACCA 58.930 41.667 0.00 0.00 0.00 3.67
27 28 4.082733 GCCCTTAGATCAGTTCACAAAACC 60.083 45.833 0.00 0.00 0.00 3.27
28 29 4.518970 TGCCCTTAGATCAGTTCACAAAAC 59.481 41.667 0.00 0.00 0.00 2.43
29 30 4.724399 TGCCCTTAGATCAGTTCACAAAA 58.276 39.130 0.00 0.00 0.00 2.44
30 31 4.365514 TGCCCTTAGATCAGTTCACAAA 57.634 40.909 0.00 0.00 0.00 2.83
31 32 4.264253 CATGCCCTTAGATCAGTTCACAA 58.736 43.478 0.00 0.00 0.00 3.33
32 33 3.370846 CCATGCCCTTAGATCAGTTCACA 60.371 47.826 0.00 0.00 0.00 3.58
33 34 3.209410 CCATGCCCTTAGATCAGTTCAC 58.791 50.000 0.00 0.00 0.00 3.18
34 35 2.421952 GCCATGCCCTTAGATCAGTTCA 60.422 50.000 0.00 0.00 0.00 3.18
35 36 2.158696 AGCCATGCCCTTAGATCAGTTC 60.159 50.000 0.00 0.00 0.00 3.01
36 37 1.849039 AGCCATGCCCTTAGATCAGTT 59.151 47.619 0.00 0.00 0.00 3.16
37 38 1.516110 AGCCATGCCCTTAGATCAGT 58.484 50.000 0.00 0.00 0.00 3.41
38 39 3.406764 GTTAGCCATGCCCTTAGATCAG 58.593 50.000 0.00 0.00 0.00 2.90
39 40 2.224281 CGTTAGCCATGCCCTTAGATCA 60.224 50.000 0.00 0.00 0.00 2.92
40 41 2.417719 CGTTAGCCATGCCCTTAGATC 58.582 52.381 0.00 0.00 0.00 2.75
41 42 1.072331 CCGTTAGCCATGCCCTTAGAT 59.928 52.381 0.00 0.00 0.00 1.98
42 43 0.468226 CCGTTAGCCATGCCCTTAGA 59.532 55.000 0.00 0.00 0.00 2.10
43 44 0.180406 ACCGTTAGCCATGCCCTTAG 59.820 55.000 0.00 0.00 0.00 2.18
44 45 1.498264 TACCGTTAGCCATGCCCTTA 58.502 50.000 0.00 0.00 0.00 2.69
45 46 0.843984 ATACCGTTAGCCATGCCCTT 59.156 50.000 0.00 0.00 0.00 3.95
46 47 0.108585 CATACCGTTAGCCATGCCCT 59.891 55.000 0.00 0.00 0.00 5.19
47 48 1.515521 GCATACCGTTAGCCATGCCC 61.516 60.000 0.00 0.00 38.24 5.36
48 49 0.535102 AGCATACCGTTAGCCATGCC 60.535 55.000 2.00 0.00 43.81 4.40
49 50 1.264288 GAAGCATACCGTTAGCCATGC 59.736 52.381 0.00 0.00 43.24 4.06
50 51 2.560504 TGAAGCATACCGTTAGCCATG 58.439 47.619 0.00 0.00 0.00 3.66
51 52 3.118408 TCTTGAAGCATACCGTTAGCCAT 60.118 43.478 0.00 0.00 0.00 4.40
52 53 2.235155 TCTTGAAGCATACCGTTAGCCA 59.765 45.455 0.00 0.00 0.00 4.75
53 54 2.866762 CTCTTGAAGCATACCGTTAGCC 59.133 50.000 0.00 0.00 0.00 3.93
54 55 3.307242 CACTCTTGAAGCATACCGTTAGC 59.693 47.826 0.00 0.00 0.00 3.09
55 56 4.744570 TCACTCTTGAAGCATACCGTTAG 58.255 43.478 0.00 0.00 0.00 2.34
56 57 4.794278 TCACTCTTGAAGCATACCGTTA 57.206 40.909 0.00 0.00 0.00 3.18
57 58 3.678056 TCACTCTTGAAGCATACCGTT 57.322 42.857 0.00 0.00 0.00 4.44
58 59 3.525537 CATCACTCTTGAAGCATACCGT 58.474 45.455 0.00 0.00 34.61 4.83
59 60 2.286294 GCATCACTCTTGAAGCATACCG 59.714 50.000 0.00 0.00 44.33 4.02
60 61 2.615912 GGCATCACTCTTGAAGCATACC 59.384 50.000 4.46 0.00 46.30 2.73
61 62 3.539604 AGGCATCACTCTTGAAGCATAC 58.460 45.455 4.46 0.00 46.30 2.39
62 63 3.739209 CGAGGCATCACTCTTGAAGCATA 60.739 47.826 0.00 0.00 46.30 3.14
63 64 2.641305 GAGGCATCACTCTTGAAGCAT 58.359 47.619 4.46 0.00 46.30 3.79
64 65 1.673923 CGAGGCATCACTCTTGAAGCA 60.674 52.381 0.00 0.00 46.30 3.91
65 66 1.005340 CGAGGCATCACTCTTGAAGC 58.995 55.000 0.00 0.00 44.22 3.86
66 67 1.005340 GCGAGGCATCACTCTTGAAG 58.995 55.000 0.00 0.00 34.61 3.02
67 68 0.321346 TGCGAGGCATCACTCTTGAA 59.679 50.000 0.00 0.00 34.61 2.69
68 69 0.108472 CTGCGAGGCATCACTCTTGA 60.108 55.000 0.00 0.00 38.13 3.02
69 70 1.703438 GCTGCGAGGCATCACTCTTG 61.703 60.000 0.00 0.00 38.13 3.02
70 71 1.449246 GCTGCGAGGCATCACTCTT 60.449 57.895 0.00 0.00 38.13 2.85
71 72 2.186384 GCTGCGAGGCATCACTCT 59.814 61.111 0.00 0.00 38.13 3.24
72 73 2.894387 GGCTGCGAGGCATCACTC 60.894 66.667 0.00 0.00 40.97 3.51
73 74 3.709633 TGGCTGCGAGGCATCACT 61.710 61.111 0.00 0.00 46.47 3.41
79 80 2.512515 CCTAGTTGGCTGCGAGGC 60.513 66.667 0.00 3.31 41.77 4.70
88 89 4.445699 GCATCCGAGCCTAGTTGG 57.554 61.111 0.00 0.00 39.35 3.77
96 97 2.821366 CCACAGTGGCATCCGAGC 60.821 66.667 6.67 0.00 0.00 5.03
97 98 1.153489 CTCCACAGTGGCATCCGAG 60.153 63.158 15.64 1.80 37.47 4.63
98 99 0.613572 TACTCCACAGTGGCATCCGA 60.614 55.000 15.64 0.00 37.47 4.55
99 100 0.249120 TTACTCCACAGTGGCATCCG 59.751 55.000 15.64 3.23 37.47 4.18
100 101 1.279271 ACTTACTCCACAGTGGCATCC 59.721 52.381 15.64 0.00 37.47 3.51
101 102 2.770164 ACTTACTCCACAGTGGCATC 57.230 50.000 15.64 0.00 37.47 3.91
102 103 3.508845 AAACTTACTCCACAGTGGCAT 57.491 42.857 15.64 7.66 37.47 4.40
103 104 3.389983 ACTAAACTTACTCCACAGTGGCA 59.610 43.478 15.64 3.20 37.47 4.92
104 105 4.004196 ACTAAACTTACTCCACAGTGGC 57.996 45.455 15.64 0.00 37.47 5.01
105 106 5.169295 GCTACTAAACTTACTCCACAGTGG 58.831 45.833 14.19 14.19 39.43 4.00
106 107 5.047235 AGGCTACTAAACTTACTCCACAGTG 60.047 44.000 0.00 0.00 33.62 3.66
107 108 5.085219 AGGCTACTAAACTTACTCCACAGT 58.915 41.667 0.00 0.00 36.55 3.55
108 109 5.662674 AGGCTACTAAACTTACTCCACAG 57.337 43.478 0.00 0.00 0.00 3.66
109 110 5.790593 CAAGGCTACTAAACTTACTCCACA 58.209 41.667 0.00 0.00 0.00 4.17
110 111 4.630505 GCAAGGCTACTAAACTTACTCCAC 59.369 45.833 0.00 0.00 0.00 4.02
111 112 4.285003 TGCAAGGCTACTAAACTTACTCCA 59.715 41.667 0.00 0.00 0.00 3.86
112 113 4.828829 TGCAAGGCTACTAAACTTACTCC 58.171 43.478 0.00 0.00 0.00 3.85
113 114 5.348997 CACTGCAAGGCTACTAAACTTACTC 59.651 44.000 0.00 0.00 39.30 2.59
114 115 5.221661 ACACTGCAAGGCTACTAAACTTACT 60.222 40.000 0.00 0.00 39.30 2.24
115 116 4.995487 ACACTGCAAGGCTACTAAACTTAC 59.005 41.667 0.00 0.00 39.30 2.34
116 117 4.994852 CACACTGCAAGGCTACTAAACTTA 59.005 41.667 0.00 0.00 39.30 2.24
117 118 3.815401 CACACTGCAAGGCTACTAAACTT 59.185 43.478 0.00 0.00 39.30 2.66
118 119 3.181454 ACACACTGCAAGGCTACTAAACT 60.181 43.478 0.00 0.00 39.30 2.66
119 120 3.139077 ACACACTGCAAGGCTACTAAAC 58.861 45.455 0.00 0.00 39.30 2.01
120 121 3.181459 TGACACACTGCAAGGCTACTAAA 60.181 43.478 0.00 0.00 39.30 1.85
121 122 2.367241 TGACACACTGCAAGGCTACTAA 59.633 45.455 0.00 0.00 39.30 2.24
122 123 1.967779 TGACACACTGCAAGGCTACTA 59.032 47.619 0.00 0.00 39.30 1.82
123 124 0.758734 TGACACACTGCAAGGCTACT 59.241 50.000 0.00 0.00 39.30 2.57
124 125 1.151668 CTGACACACTGCAAGGCTAC 58.848 55.000 0.00 0.00 39.30 3.58
125 126 1.001293 CTCTGACACACTGCAAGGCTA 59.999 52.381 0.00 0.00 39.30 3.93
126 127 0.250209 CTCTGACACACTGCAAGGCT 60.250 55.000 0.00 0.00 39.30 4.58
127 128 1.849976 GCTCTGACACACTGCAAGGC 61.850 60.000 0.00 0.00 39.30 4.35
128 129 0.533531 TGCTCTGACACACTGCAAGG 60.534 55.000 0.00 0.00 39.30 3.61
129 130 0.866427 CTGCTCTGACACACTGCAAG 59.134 55.000 0.00 0.00 42.29 4.01
130 131 0.178767 ACTGCTCTGACACACTGCAA 59.821 50.000 0.00 0.00 33.07 4.08
131 132 0.178767 AACTGCTCTGACACACTGCA 59.821 50.000 0.00 0.00 0.00 4.41
132 133 1.003116 CAAACTGCTCTGACACACTGC 60.003 52.381 0.00 0.00 0.00 4.40
133 134 1.003116 GCAAACTGCTCTGACACACTG 60.003 52.381 0.00 0.00 40.96 3.66
134 135 1.303309 GCAAACTGCTCTGACACACT 58.697 50.000 0.00 0.00 40.96 3.55
135 136 1.003116 CTGCAAACTGCTCTGACACAC 60.003 52.381 0.00 0.00 45.31 3.82
136 137 1.134431 TCTGCAAACTGCTCTGACACA 60.134 47.619 0.00 0.00 45.31 3.72
137 138 1.586422 TCTGCAAACTGCTCTGACAC 58.414 50.000 0.00 0.00 45.31 3.67
138 139 2.158914 TCTTCTGCAAACTGCTCTGACA 60.159 45.455 0.00 0.00 45.31 3.58
139 140 2.479656 CTCTTCTGCAAACTGCTCTGAC 59.520 50.000 0.00 0.00 45.31 3.51
140 141 2.366590 TCTCTTCTGCAAACTGCTCTGA 59.633 45.455 0.00 0.00 45.31 3.27
141 142 2.763933 TCTCTTCTGCAAACTGCTCTG 58.236 47.619 0.00 0.00 45.31 3.35
142 143 3.598299 GATCTCTTCTGCAAACTGCTCT 58.402 45.455 0.00 0.00 45.31 4.09
143 144 2.348059 CGATCTCTTCTGCAAACTGCTC 59.652 50.000 0.00 0.00 45.31 4.26
144 145 2.344950 CGATCTCTTCTGCAAACTGCT 58.655 47.619 0.00 0.00 45.31 4.24
145 146 1.202009 GCGATCTCTTCTGCAAACTGC 60.202 52.381 0.00 0.00 45.29 4.40
146 147 2.093941 CAGCGATCTCTTCTGCAAACTG 59.906 50.000 0.00 0.00 0.00 3.16
147 148 2.344950 CAGCGATCTCTTCTGCAAACT 58.655 47.619 0.00 0.00 0.00 2.66
148 149 2.802556 CAGCGATCTCTTCTGCAAAC 57.197 50.000 0.00 0.00 0.00 2.93
153 154 1.227497 GGGGCAGCGATCTCTTCTG 60.227 63.158 0.00 0.00 0.00 3.02
154 155 1.053264 ATGGGGCAGCGATCTCTTCT 61.053 55.000 0.00 0.00 0.00 2.85
155 156 0.602372 GATGGGGCAGCGATCTCTTC 60.602 60.000 0.00 0.00 0.00 2.87
156 157 1.340399 TGATGGGGCAGCGATCTCTT 61.340 55.000 0.00 0.00 0.00 2.85
157 158 1.756408 CTGATGGGGCAGCGATCTCT 61.756 60.000 0.00 0.00 0.00 3.10
158 159 1.301558 CTGATGGGGCAGCGATCTC 60.302 63.158 0.00 0.00 0.00 2.75
159 160 1.340399 TTCTGATGGGGCAGCGATCT 61.340 55.000 0.00 0.00 35.86 2.75
160 161 0.464373 TTTCTGATGGGGCAGCGATC 60.464 55.000 0.00 0.00 35.86 3.69
161 162 0.465097 CTTTCTGATGGGGCAGCGAT 60.465 55.000 0.00 0.00 35.86 4.58
162 163 1.078214 CTTTCTGATGGGGCAGCGA 60.078 57.895 0.00 0.00 35.86 4.93
163 164 1.078214 TCTTTCTGATGGGGCAGCG 60.078 57.895 0.00 0.00 35.86 5.18
164 165 0.254178 TCTCTTTCTGATGGGGCAGC 59.746 55.000 0.00 0.00 35.86 5.25
165 166 2.238144 TCTTCTCTTTCTGATGGGGCAG 59.762 50.000 0.00 0.00 37.24 4.85
166 167 2.269023 TCTTCTCTTTCTGATGGGGCA 58.731 47.619 0.00 0.00 0.00 5.36
167 168 3.356529 TTCTTCTCTTTCTGATGGGGC 57.643 47.619 0.00 0.00 0.00 5.80
168 169 4.157472 GCTTTTCTTCTCTTTCTGATGGGG 59.843 45.833 0.00 0.00 0.00 4.96
169 170 4.763793 TGCTTTTCTTCTCTTTCTGATGGG 59.236 41.667 0.00 0.00 0.00 4.00
170 171 5.704515 TCTGCTTTTCTTCTCTTTCTGATGG 59.295 40.000 0.00 0.00 0.00 3.51
171 172 6.798315 TCTGCTTTTCTTCTCTTTCTGATG 57.202 37.500 0.00 0.00 0.00 3.07
172 173 6.941436 ACATCTGCTTTTCTTCTCTTTCTGAT 59.059 34.615 0.00 0.00 0.00 2.90
173 174 6.294473 ACATCTGCTTTTCTTCTCTTTCTGA 58.706 36.000 0.00 0.00 0.00 3.27
174 175 6.557291 ACATCTGCTTTTCTTCTCTTTCTG 57.443 37.500 0.00 0.00 0.00 3.02
175 176 7.675062 TCTACATCTGCTTTTCTTCTCTTTCT 58.325 34.615 0.00 0.00 0.00 2.52
176 177 7.816995 TCTCTACATCTGCTTTTCTTCTCTTTC 59.183 37.037 0.00 0.00 0.00 2.62
177 178 7.675062 TCTCTACATCTGCTTTTCTTCTCTTT 58.325 34.615 0.00 0.00 0.00 2.52
178 179 7.238486 TCTCTACATCTGCTTTTCTTCTCTT 57.762 36.000 0.00 0.00 0.00 2.85
179 180 6.127366 CCTCTCTACATCTGCTTTTCTTCTCT 60.127 42.308 0.00 0.00 0.00 3.10
180 181 6.042143 CCTCTCTACATCTGCTTTTCTTCTC 58.958 44.000 0.00 0.00 0.00 2.87
181 182 5.104982 CCCTCTCTACATCTGCTTTTCTTCT 60.105 44.000 0.00 0.00 0.00 2.85
182 183 5.115480 CCCTCTCTACATCTGCTTTTCTTC 58.885 45.833 0.00 0.00 0.00 2.87
183 184 4.625083 GCCCTCTCTACATCTGCTTTTCTT 60.625 45.833 0.00 0.00 0.00 2.52
184 185 3.118445 GCCCTCTCTACATCTGCTTTTCT 60.118 47.826 0.00 0.00 0.00 2.52
185 186 3.202097 GCCCTCTCTACATCTGCTTTTC 58.798 50.000 0.00 0.00 0.00 2.29
186 187 2.419297 CGCCCTCTCTACATCTGCTTTT 60.419 50.000 0.00 0.00 0.00 2.27
187 188 1.137872 CGCCCTCTCTACATCTGCTTT 59.862 52.381 0.00 0.00 0.00 3.51
188 189 0.749649 CGCCCTCTCTACATCTGCTT 59.250 55.000 0.00 0.00 0.00 3.91
189 190 1.743321 GCGCCCTCTCTACATCTGCT 61.743 60.000 0.00 0.00 0.00 4.24
190 191 1.300542 GCGCCCTCTCTACATCTGC 60.301 63.158 0.00 0.00 0.00 4.26
191 192 0.031857 CAGCGCCCTCTCTACATCTG 59.968 60.000 2.29 0.00 0.00 2.90
192 193 1.743321 GCAGCGCCCTCTCTACATCT 61.743 60.000 2.29 0.00 0.00 2.90
193 194 1.300542 GCAGCGCCCTCTCTACATC 60.301 63.158 2.29 0.00 0.00 3.06
194 195 2.818132 GCAGCGCCCTCTCTACAT 59.182 61.111 2.29 0.00 0.00 2.29
195 196 3.826754 CGCAGCGCCCTCTCTACA 61.827 66.667 2.29 0.00 0.00 2.74
196 197 3.827898 ACGCAGCGCCCTCTCTAC 61.828 66.667 16.61 0.00 0.00 2.59
197 198 3.826754 CACGCAGCGCCCTCTCTA 61.827 66.667 16.61 0.00 0.00 2.43
207 208 1.887320 CTTTCAACTATGCACGCAGC 58.113 50.000 0.00 0.00 45.96 5.25
208 209 1.197492 TGCTTTCAACTATGCACGCAG 59.803 47.619 0.00 0.00 0.00 5.18
209 210 1.197492 CTGCTTTCAACTATGCACGCA 59.803 47.619 0.00 0.00 0.00 5.24
210 211 1.466360 CCTGCTTTCAACTATGCACGC 60.466 52.381 0.00 0.00 0.00 5.34
211 212 2.076100 TCCTGCTTTCAACTATGCACG 58.924 47.619 0.00 0.00 0.00 5.34
212 213 3.753272 TCTTCCTGCTTTCAACTATGCAC 59.247 43.478 0.00 0.00 0.00 4.57
213 214 4.019792 TCTTCCTGCTTTCAACTATGCA 57.980 40.909 0.00 0.00 0.00 3.96
214 215 4.697352 TCTTCTTCCTGCTTTCAACTATGC 59.303 41.667 0.00 0.00 0.00 3.14
215 216 6.596888 TCATCTTCTTCCTGCTTTCAACTATG 59.403 38.462 0.00 0.00 0.00 2.23
216 217 6.715280 TCATCTTCTTCCTGCTTTCAACTAT 58.285 36.000 0.00 0.00 0.00 2.12
217 218 6.114187 TCATCTTCTTCCTGCTTTCAACTA 57.886 37.500 0.00 0.00 0.00 2.24
218 219 4.978099 TCATCTTCTTCCTGCTTTCAACT 58.022 39.130 0.00 0.00 0.00 3.16
219 220 5.182760 ACATCATCTTCTTCCTGCTTTCAAC 59.817 40.000 0.00 0.00 0.00 3.18
220 221 5.319453 ACATCATCTTCTTCCTGCTTTCAA 58.681 37.500 0.00 0.00 0.00 2.69
221 222 4.914983 ACATCATCTTCTTCCTGCTTTCA 58.085 39.130 0.00 0.00 0.00 2.69
222 223 5.392811 CCAACATCATCTTCTTCCTGCTTTC 60.393 44.000 0.00 0.00 0.00 2.62
223 224 4.461781 CCAACATCATCTTCTTCCTGCTTT 59.538 41.667 0.00 0.00 0.00 3.51
224 225 4.015084 CCAACATCATCTTCTTCCTGCTT 58.985 43.478 0.00 0.00 0.00 3.91
225 226 3.618351 CCAACATCATCTTCTTCCTGCT 58.382 45.455 0.00 0.00 0.00 4.24
226 227 2.686915 CCCAACATCATCTTCTTCCTGC 59.313 50.000 0.00 0.00 0.00 4.85
227 228 3.285484 CCCCAACATCATCTTCTTCCTG 58.715 50.000 0.00 0.00 0.00 3.86
228 229 2.357569 GCCCCAACATCATCTTCTTCCT 60.358 50.000 0.00 0.00 0.00 3.36
229 230 2.027385 GCCCCAACATCATCTTCTTCC 58.973 52.381 0.00 0.00 0.00 3.46
230 231 2.424956 GTGCCCCAACATCATCTTCTTC 59.575 50.000 0.00 0.00 0.00 2.87
231 232 2.225091 TGTGCCCCAACATCATCTTCTT 60.225 45.455 0.00 0.00 0.00 2.52
232 233 1.355381 TGTGCCCCAACATCATCTTCT 59.645 47.619 0.00 0.00 0.00 2.85
233 234 1.838112 TGTGCCCCAACATCATCTTC 58.162 50.000 0.00 0.00 0.00 2.87
234 235 2.537633 ATGTGCCCCAACATCATCTT 57.462 45.000 0.00 0.00 35.92 2.40
235 236 2.511218 ACTATGTGCCCCAACATCATCT 59.489 45.455 0.00 0.00 41.09 2.90
236 237 2.936202 ACTATGTGCCCCAACATCATC 58.064 47.619 0.00 0.00 41.09 2.92
237 238 3.459598 AGTACTATGTGCCCCAACATCAT 59.540 43.478 0.00 0.00 41.09 2.45
238 239 2.843730 AGTACTATGTGCCCCAACATCA 59.156 45.455 0.00 0.00 41.09 3.07
239 240 3.206150 CAGTACTATGTGCCCCAACATC 58.794 50.000 0.00 0.00 41.09 3.06
240 241 2.576191 ACAGTACTATGTGCCCCAACAT 59.424 45.455 0.00 0.00 43.21 2.71
241 242 1.982226 ACAGTACTATGTGCCCCAACA 59.018 47.619 0.00 0.00 30.46 3.33
242 243 2.747446 CAACAGTACTATGTGCCCCAAC 59.253 50.000 0.00 0.00 32.52 3.77
243 244 2.290641 CCAACAGTACTATGTGCCCCAA 60.291 50.000 0.00 0.00 32.52 4.12
244 245 1.280710 CCAACAGTACTATGTGCCCCA 59.719 52.381 0.00 0.00 32.52 4.96
245 246 1.557832 TCCAACAGTACTATGTGCCCC 59.442 52.381 0.00 0.00 32.52 5.80
246 247 2.236395 ACTCCAACAGTACTATGTGCCC 59.764 50.000 0.00 0.00 31.37 5.36
247 248 3.056107 TGACTCCAACAGTACTATGTGCC 60.056 47.826 0.00 0.00 34.41 5.01
248 249 4.177026 CTGACTCCAACAGTACTATGTGC 58.823 47.826 0.00 0.00 34.41 4.57
249 250 4.177026 GCTGACTCCAACAGTACTATGTG 58.823 47.826 0.00 0.00 34.41 3.21
250 251 3.195825 GGCTGACTCCAACAGTACTATGT 59.804 47.826 0.00 0.00 34.41 2.29
251 252 3.195610 TGGCTGACTCCAACAGTACTATG 59.804 47.826 0.00 0.00 34.41 2.23
252 253 3.195825 GTGGCTGACTCCAACAGTACTAT 59.804 47.826 0.00 0.00 37.96 2.12
253 254 2.561419 GTGGCTGACTCCAACAGTACTA 59.439 50.000 0.00 0.00 37.96 1.82
254 255 1.344763 GTGGCTGACTCCAACAGTACT 59.655 52.381 0.00 0.00 37.96 2.73
255 256 1.070134 TGTGGCTGACTCCAACAGTAC 59.930 52.381 0.00 0.00 37.96 2.73
256 257 1.344438 CTGTGGCTGACTCCAACAGTA 59.656 52.381 0.00 0.00 37.96 2.74
257 258 0.107456 CTGTGGCTGACTCCAACAGT 59.893 55.000 0.00 0.00 37.96 3.55
258 259 0.604780 CCTGTGGCTGACTCCAACAG 60.605 60.000 0.00 0.00 37.96 3.16
259 260 1.451504 CCTGTGGCTGACTCCAACA 59.548 57.895 0.00 0.00 37.96 3.33
260 261 1.968540 GCCTGTGGCTGACTCCAAC 60.969 63.158 0.73 0.00 46.69 3.77
261 262 2.431683 GCCTGTGGCTGACTCCAA 59.568 61.111 0.73 0.00 46.69 3.53
273 274 9.723601 ATTAAATTATTTTCACACAATGCCTGT 57.276 25.926 0.00 0.00 39.56 4.00
274 275 9.976255 CATTAAATTATTTTCACACAATGCCTG 57.024 29.630 0.00 0.00 0.00 4.85
275 276 9.165035 CCATTAAATTATTTTCACACAATGCCT 57.835 29.630 0.00 0.00 0.00 4.75
276 277 8.397148 CCCATTAAATTATTTTCACACAATGCC 58.603 33.333 0.00 0.00 0.00 4.40
277 278 8.945057 ACCCATTAAATTATTTTCACACAATGC 58.055 29.630 0.00 0.00 0.00 3.56
279 280 8.945057 GCACCCATTAAATTATTTTCACACAAT 58.055 29.630 0.00 0.00 0.00 2.71
280 281 7.389053 GGCACCCATTAAATTATTTTCACACAA 59.611 33.333 0.00 0.00 0.00 3.33
281 282 6.876257 GGCACCCATTAAATTATTTTCACACA 59.124 34.615 0.00 0.00 0.00 3.72
282 283 7.102993 AGGCACCCATTAAATTATTTTCACAC 58.897 34.615 0.00 0.00 0.00 3.82
283 284 7.038729 TGAGGCACCCATTAAATTATTTTCACA 60.039 33.333 0.00 0.00 0.00 3.58
284 285 7.327214 TGAGGCACCCATTAAATTATTTTCAC 58.673 34.615 0.00 0.00 0.00 3.18
285 286 7.487822 TGAGGCACCCATTAAATTATTTTCA 57.512 32.000 0.00 0.00 0.00 2.69
286 287 8.962884 AATGAGGCACCCATTAAATTATTTTC 57.037 30.769 0.00 0.00 34.19 2.29
287 288 9.752228 AAAATGAGGCACCCATTAAATTATTTT 57.248 25.926 0.00 0.00 35.13 1.82
288 289 9.752228 AAAAATGAGGCACCCATTAAATTATTT 57.248 25.926 0.00 0.00 35.13 1.40
289 290 9.394767 GAAAAATGAGGCACCCATTAAATTATT 57.605 29.630 4.48 0.00 35.13 1.40
290 291 7.992608 GGAAAAATGAGGCACCCATTAAATTAT 59.007 33.333 4.48 0.00 35.13 1.28
291 292 7.181845 AGGAAAAATGAGGCACCCATTAAATTA 59.818 33.333 4.48 0.00 35.13 1.40
292 293 6.012596 AGGAAAAATGAGGCACCCATTAAATT 60.013 34.615 4.48 2.23 35.13 1.82
293 294 5.488561 AGGAAAAATGAGGCACCCATTAAAT 59.511 36.000 4.48 0.00 35.13 1.40
294 295 4.843516 AGGAAAAATGAGGCACCCATTAAA 59.156 37.500 4.48 0.00 35.13 1.52
295 296 4.424842 AGGAAAAATGAGGCACCCATTAA 58.575 39.130 4.48 0.00 35.13 1.40
296 297 4.023291 GAGGAAAAATGAGGCACCCATTA 58.977 43.478 4.48 0.00 35.13 1.90
297 298 2.833943 GAGGAAAAATGAGGCACCCATT 59.166 45.455 0.00 0.00 38.81 3.16
298 299 2.043526 AGAGGAAAAATGAGGCACCCAT 59.956 45.455 0.00 0.00 0.00 4.00
299 300 1.428912 AGAGGAAAAATGAGGCACCCA 59.571 47.619 0.00 0.00 0.00 4.51
300 301 1.821136 CAGAGGAAAAATGAGGCACCC 59.179 52.381 0.00 0.00 0.00 4.61
301 302 2.489722 GACAGAGGAAAAATGAGGCACC 59.510 50.000 0.00 0.00 0.00 5.01
302 303 3.416156 AGACAGAGGAAAAATGAGGCAC 58.584 45.455 0.00 0.00 0.00 5.01
303 304 3.795688 AGACAGAGGAAAAATGAGGCA 57.204 42.857 0.00 0.00 0.00 4.75
304 305 3.625313 GCTAGACAGAGGAAAAATGAGGC 59.375 47.826 0.00 0.00 0.00 4.70
305 306 4.874966 CAGCTAGACAGAGGAAAAATGAGG 59.125 45.833 0.00 0.00 0.00 3.86
306 307 4.874966 CCAGCTAGACAGAGGAAAAATGAG 59.125 45.833 0.00 0.00 0.00 2.90
307 308 4.532126 TCCAGCTAGACAGAGGAAAAATGA 59.468 41.667 0.00 0.00 0.00 2.57
308 309 4.836825 TCCAGCTAGACAGAGGAAAAATG 58.163 43.478 0.00 0.00 0.00 2.32
309 310 5.435291 CATCCAGCTAGACAGAGGAAAAAT 58.565 41.667 0.00 0.00 33.04 1.82
310 311 4.323792 CCATCCAGCTAGACAGAGGAAAAA 60.324 45.833 0.00 0.00 33.04 1.94
311 312 3.198635 CCATCCAGCTAGACAGAGGAAAA 59.801 47.826 0.00 0.00 33.04 2.29
312 313 2.768527 CCATCCAGCTAGACAGAGGAAA 59.231 50.000 0.00 0.00 33.04 3.13
313 314 2.392662 CCATCCAGCTAGACAGAGGAA 58.607 52.381 0.00 0.00 33.04 3.36
314 315 1.412217 CCCATCCAGCTAGACAGAGGA 60.412 57.143 0.00 0.00 33.60 3.71
315 316 1.047002 CCCATCCAGCTAGACAGAGG 58.953 60.000 0.00 0.00 0.00 3.69
316 317 0.392336 GCCCATCCAGCTAGACAGAG 59.608 60.000 0.00 0.00 0.00 3.35
317 318 0.325577 TGCCCATCCAGCTAGACAGA 60.326 55.000 0.00 0.00 0.00 3.41
318 319 0.106335 CTGCCCATCCAGCTAGACAG 59.894 60.000 0.00 0.00 0.00 3.51
319 320 2.215191 CTGCCCATCCAGCTAGACA 58.785 57.895 0.00 0.00 0.00 3.41
326 327 1.884579 GTCAATATGCTGCCCATCCAG 59.115 52.381 0.00 0.00 35.34 3.86
327 328 1.214923 TGTCAATATGCTGCCCATCCA 59.785 47.619 0.00 0.00 35.34 3.41
328 329 1.884579 CTGTCAATATGCTGCCCATCC 59.115 52.381 0.00 0.00 35.34 3.51
329 330 1.884579 CCTGTCAATATGCTGCCCATC 59.115 52.381 0.00 0.00 35.34 3.51
330 331 1.216175 ACCTGTCAATATGCTGCCCAT 59.784 47.619 0.00 0.00 37.97 4.00
331 332 0.625316 ACCTGTCAATATGCTGCCCA 59.375 50.000 0.00 0.00 0.00 5.36
332 333 1.312815 GACCTGTCAATATGCTGCCC 58.687 55.000 0.00 0.00 0.00 5.36
333 334 0.940126 CGACCTGTCAATATGCTGCC 59.060 55.000 0.00 0.00 0.00 4.85
334 335 0.940126 CCGACCTGTCAATATGCTGC 59.060 55.000 0.00 0.00 0.00 5.25
335 336 2.315925 ACCGACCTGTCAATATGCTG 57.684 50.000 0.00 0.00 0.00 4.41
336 337 4.380531 CATAACCGACCTGTCAATATGCT 58.619 43.478 0.00 0.00 0.00 3.79
337 338 3.058914 GCATAACCGACCTGTCAATATGC 60.059 47.826 16.36 16.36 37.60 3.14
338 339 3.184379 CGCATAACCGACCTGTCAATATG 59.816 47.826 0.00 4.43 0.00 1.78
339 340 3.069016 TCGCATAACCGACCTGTCAATAT 59.931 43.478 0.00 0.00 31.36 1.28
340 341 2.427812 TCGCATAACCGACCTGTCAATA 59.572 45.455 0.00 0.00 31.36 1.90
341 342 1.206132 TCGCATAACCGACCTGTCAAT 59.794 47.619 0.00 0.00 31.36 2.57
342 343 0.604073 TCGCATAACCGACCTGTCAA 59.396 50.000 0.00 0.00 31.36 3.18
343 344 0.821517 ATCGCATAACCGACCTGTCA 59.178 50.000 0.00 0.00 40.40 3.58
344 345 1.067212 AGATCGCATAACCGACCTGTC 59.933 52.381 0.00 0.00 40.40 3.51
345 346 1.112113 AGATCGCATAACCGACCTGT 58.888 50.000 0.00 0.00 40.40 4.00
346 347 2.293677 AGTAGATCGCATAACCGACCTG 59.706 50.000 0.00 0.00 40.40 4.00
347 348 2.553172 GAGTAGATCGCATAACCGACCT 59.447 50.000 0.00 0.00 40.40 3.85
348 349 2.351544 GGAGTAGATCGCATAACCGACC 60.352 54.545 0.00 0.00 40.40 4.79
349 350 2.351544 GGGAGTAGATCGCATAACCGAC 60.352 54.545 0.00 0.00 40.40 4.79
350 351 1.884579 GGGAGTAGATCGCATAACCGA 59.115 52.381 0.00 0.00 40.52 4.69
351 352 1.887198 AGGGAGTAGATCGCATAACCG 59.113 52.381 0.00 0.00 43.20 4.44
352 353 3.057174 CAGAGGGAGTAGATCGCATAACC 60.057 52.174 0.00 0.00 43.20 2.85
353 354 3.570550 ACAGAGGGAGTAGATCGCATAAC 59.429 47.826 0.00 0.00 43.20 1.89
354 355 3.833732 ACAGAGGGAGTAGATCGCATAA 58.166 45.455 0.00 0.00 43.20 1.90
355 356 3.510531 ACAGAGGGAGTAGATCGCATA 57.489 47.619 0.00 0.00 43.20 3.14
356 357 2.373335 ACAGAGGGAGTAGATCGCAT 57.627 50.000 0.00 0.00 43.20 4.73
357 358 2.025155 GAACAGAGGGAGTAGATCGCA 58.975 52.381 0.00 0.00 43.20 5.10
358 359 1.338655 GGAACAGAGGGAGTAGATCGC 59.661 57.143 0.00 0.00 41.11 4.58
359 360 2.938838 AGGAACAGAGGGAGTAGATCG 58.061 52.381 0.00 0.00 0.00 3.69
360 361 6.987403 ATTTAGGAACAGAGGGAGTAGATC 57.013 41.667 0.00 0.00 0.00 2.75
362 363 9.947189 TTTATATTTAGGAACAGAGGGAGTAGA 57.053 33.333 0.00 0.00 0.00 2.59
365 366 8.832735 TGTTTTATATTTAGGAACAGAGGGAGT 58.167 33.333 0.00 0.00 0.00 3.85
366 367 9.853177 ATGTTTTATATTTAGGAACAGAGGGAG 57.147 33.333 0.00 0.00 34.17 4.30
409 410 9.330063 CACTCATTTTGCTTCTTATATAGTCCA 57.670 33.333 0.00 0.00 0.00 4.02
410 411 9.547753 TCACTCATTTTGCTTCTTATATAGTCC 57.452 33.333 0.00 0.00 0.00 3.85
453 454 9.901172 ACTACATACGGATGTATATCAGACATA 57.099 33.333 20.64 0.00 45.42 2.29
454 455 8.809468 ACTACATACGGATGTATATCAGACAT 57.191 34.615 20.64 0.00 45.42 3.06
455 456 7.336176 GGACTACATACGGATGTATATCAGACA 59.664 40.741 20.64 0.00 45.42 3.41
456 457 7.465647 CGGACTACATACGGATGTATATCAGAC 60.466 44.444 20.64 10.60 45.42 3.51
457 458 6.537660 CGGACTACATACGGATGTATATCAGA 59.462 42.308 20.64 0.00 45.42 3.27
458 459 6.315642 ACGGACTACATACGGATGTATATCAG 59.684 42.308 20.64 20.82 45.42 2.90
459 460 6.175471 ACGGACTACATACGGATGTATATCA 58.825 40.000 20.64 0.12 45.42 2.15
460 461 6.674694 ACGGACTACATACGGATGTATATC 57.325 41.667 20.64 19.06 45.42 1.63
461 462 8.743085 AATACGGACTACATACGGATGTATAT 57.257 34.615 20.64 12.15 45.42 0.86
462 463 9.665719 TTAATACGGACTACATACGGATGTATA 57.334 33.333 20.64 10.32 45.42 1.47
463 464 8.565896 TTAATACGGACTACATACGGATGTAT 57.434 34.615 20.64 11.04 45.42 2.29
464 465 7.977789 TTAATACGGACTACATACGGATGTA 57.022 36.000 19.32 19.32 44.77 2.29
498 499 9.280174 CCCTCCGTTTCTAAATATAAGCATTTA 57.720 33.333 0.00 0.00 30.84 1.40
499 500 7.996644 TCCCTCCGTTTCTAAATATAAGCATTT 59.003 33.333 0.00 0.00 32.91 2.32
500 501 7.514721 TCCCTCCGTTTCTAAATATAAGCATT 58.485 34.615 0.00 0.00 0.00 3.56
501 502 7.074653 TCCCTCCGTTTCTAAATATAAGCAT 57.925 36.000 0.00 0.00 0.00 3.79
502 503 6.099269 ACTCCCTCCGTTTCTAAATATAAGCA 59.901 38.462 0.00 0.00 0.00 3.91
503 504 6.522946 ACTCCCTCCGTTTCTAAATATAAGC 58.477 40.000 0.00 0.00 0.00 3.09
511 512 9.822185 GTTATTTAATACTCCCTCCGTTTCTAA 57.178 33.333 0.00 0.00 0.00 2.10
512 513 8.137437 CGTTATTTAATACTCCCTCCGTTTCTA 58.863 37.037 0.00 0.00 0.00 2.10
513 514 6.982724 CGTTATTTAATACTCCCTCCGTTTCT 59.017 38.462 0.00 0.00 0.00 2.52
514 515 6.201615 CCGTTATTTAATACTCCCTCCGTTTC 59.798 42.308 0.00 0.00 0.00 2.78
515 516 6.051074 CCGTTATTTAATACTCCCTCCGTTT 58.949 40.000 0.00 0.00 0.00 3.60
516 517 5.129320 ACCGTTATTTAATACTCCCTCCGTT 59.871 40.000 0.00 0.00 0.00 4.44
517 518 4.651045 ACCGTTATTTAATACTCCCTCCGT 59.349 41.667 0.00 0.00 0.00 4.69
518 519 5.205759 ACCGTTATTTAATACTCCCTCCG 57.794 43.478 0.00 0.00 0.00 4.63
535 536 9.193806 TCTAGATACCAAGTCTTTAATACCGTT 57.806 33.333 0.00 0.00 0.00 4.44
536 537 8.757982 TCTAGATACCAAGTCTTTAATACCGT 57.242 34.615 0.00 0.00 0.00 4.83
570 571 5.286082 GCGCGTCATTATTCACAGAATTTTT 59.714 36.000 8.43 0.00 0.00 1.94
571 572 4.793216 GCGCGTCATTATTCACAGAATTTT 59.207 37.500 8.43 0.00 0.00 1.82
572 573 4.142708 TGCGCGTCATTATTCACAGAATTT 60.143 37.500 8.43 0.00 0.00 1.82
573 574 3.373748 TGCGCGTCATTATTCACAGAATT 59.626 39.130 8.43 0.00 0.00 2.17
574 575 2.935849 TGCGCGTCATTATTCACAGAAT 59.064 40.909 8.43 0.00 0.00 2.40
575 576 2.342179 TGCGCGTCATTATTCACAGAA 58.658 42.857 8.43 0.00 0.00 3.02
576 577 2.003196 TGCGCGTCATTATTCACAGA 57.997 45.000 8.43 0.00 0.00 3.41
577 578 4.451379 TTATGCGCGTCATTATTCACAG 57.549 40.909 18.48 0.00 36.63 3.66
578 579 4.866682 TTTATGCGCGTCATTATTCACA 57.133 36.364 18.48 0.05 36.63 3.58
579 580 8.985694 GTATTATTTATGCGCGTCATTATTCAC 58.014 33.333 18.48 7.54 36.63 3.18
580 581 8.713271 TGTATTATTTATGCGCGTCATTATTCA 58.287 29.630 18.48 1.03 36.63 2.57
581 582 9.702726 ATGTATTATTTATGCGCGTCATTATTC 57.297 29.630 18.48 0.00 36.63 1.75
582 583 9.489393 CATGTATTATTTATGCGCGTCATTATT 57.511 29.630 18.48 10.30 36.63 1.40
583 584 8.664798 ACATGTATTATTTATGCGCGTCATTAT 58.335 29.630 18.48 14.67 36.63 1.28
584 585 8.024146 ACATGTATTATTTATGCGCGTCATTA 57.976 30.769 18.48 9.18 36.63 1.90
585 586 6.898041 ACATGTATTATTTATGCGCGTCATT 58.102 32.000 18.48 6.43 36.63 2.57
586 587 6.480524 ACATGTATTATTTATGCGCGTCAT 57.519 33.333 4.79 17.64 39.17 3.06
587 588 5.915812 ACATGTATTATTTATGCGCGTCA 57.084 34.783 4.79 6.86 0.00 4.35
588 589 6.359545 TCAACATGTATTATTTATGCGCGTC 58.640 36.000 4.79 0.00 0.00 5.19
589 590 6.293713 TCAACATGTATTATTTATGCGCGT 57.706 33.333 8.43 7.55 0.00 6.01
590 591 7.006476 GTCATCAACATGTATTATTTATGCGCG 59.994 37.037 0.00 0.00 0.00 6.86
591 592 7.006476 CGTCATCAACATGTATTATTTATGCGC 59.994 37.037 0.00 0.00 0.00 6.09
592 593 8.220434 TCGTCATCAACATGTATTATTTATGCG 58.780 33.333 0.00 0.00 0.00 4.73
593 594 9.877137 TTCGTCATCAACATGTATTATTTATGC 57.123 29.630 0.00 0.00 0.00 3.14
693 695 3.009599 CGACGTACGATGGCGACG 61.010 66.667 24.41 11.05 45.77 5.12
854 861 4.418013 TGCAATAAATCAGTGAACCACG 57.582 40.909 0.00 0.00 39.64 4.94
878 885 2.801996 CGCACGCACAATGCCAAG 60.802 61.111 0.00 0.00 41.12 3.61
912 919 0.713883 GCATTATATCGCCGTCGTGG 59.286 55.000 0.00 0.00 42.50 4.94
913 920 0.713883 GGCATTATATCGCCGTCGTG 59.286 55.000 0.00 0.00 38.82 4.35
914 921 3.117589 GGCATTATATCGCCGTCGT 57.882 52.632 0.00 0.00 38.82 4.34
1049 1056 4.175489 CCGTCGTCGATGCGTCCT 62.175 66.667 9.02 0.00 39.71 3.85
1276 1283 0.693049 AAGTGGCCTCGGTTCTTGAT 59.307 50.000 3.32 0.00 0.00 2.57
1342 1349 7.159372 TGCTTAGTATAGCTTACTAATTGGGC 58.841 38.462 19.69 18.91 41.76 5.36
1391 1398 2.029470 AGAGACGCCTTCATATGCTAGC 60.029 50.000 8.10 8.10 0.00 3.42
1393 1400 3.004839 GTCAGAGACGCCTTCATATGCTA 59.995 47.826 0.00 0.00 0.00 3.49
1427 1434 6.219473 AGCTGATACGGATAACATCTTGAAG 58.781 40.000 0.00 0.00 0.00 3.02
1428 1435 6.161855 AGCTGATACGGATAACATCTTGAA 57.838 37.500 0.00 0.00 0.00 2.69
1439 1446 4.917385 AGAGATACTGAGCTGATACGGAT 58.083 43.478 0.00 0.00 0.00 4.18
1469 1476 3.685272 TCGAGATACTGAGCCGATACATC 59.315 47.826 0.00 0.00 0.00 3.06
1470 1477 3.676093 TCGAGATACTGAGCCGATACAT 58.324 45.455 0.00 0.00 0.00 2.29
1477 1492 2.295909 AGCATCTTCGAGATACTGAGCC 59.704 50.000 0.00 0.00 32.12 4.70
1483 1498 6.451393 ACCTTTATGAGCATCTTCGAGATAC 58.549 40.000 0.00 0.00 32.12 2.24
1491 1506 5.882557 CACACCTTACCTTTATGAGCATCTT 59.117 40.000 0.00 0.00 34.92 2.40
1522 1537 6.316140 GCTCACATACACTCAATCCAATAACA 59.684 38.462 0.00 0.00 0.00 2.41
1528 1543 3.979101 TGCTCACATACACTCAATCCA 57.021 42.857 0.00 0.00 0.00 3.41
1531 1546 5.699915 GCTCATATGCTCACATACACTCAAT 59.300 40.000 0.00 0.00 41.50 2.57
1542 1557 5.295292 ACACATTACAAGCTCATATGCTCAC 59.705 40.000 0.00 0.00 43.24 3.51
1550 1565 7.715657 TCTTTTTGAACACATTACAAGCTCAT 58.284 30.769 0.00 0.00 0.00 2.90
1628 1643 6.831868 TCTTCTATATATACACATGCGGCCTA 59.168 38.462 0.00 0.00 0.00 3.93
1629 1644 5.656859 TCTTCTATATATACACATGCGGCCT 59.343 40.000 0.00 0.00 0.00 5.19
1653 1668 0.243636 GCTTGTAAGCCACGGCAAAT 59.756 50.000 11.35 0.00 46.20 2.32
1695 1710 9.371136 GTTGTAATGTCTCTTGATGTAATCTGA 57.629 33.333 0.00 0.00 45.81 3.27
1707 1722 5.338708 CCTCCCATGAGTTGTAATGTCTCTT 60.339 44.000 0.00 0.00 36.86 2.85
1713 1728 5.102953 TCTTCCTCCCATGAGTTGTAATG 57.897 43.478 0.00 0.00 36.86 1.90
1725 1740 2.338809 TCTGCTCTTTTCTTCCTCCCA 58.661 47.619 0.00 0.00 0.00 4.37
1737 1752 5.518865 AGACCTATCTCTTCTTCTGCTCTT 58.481 41.667 0.00 0.00 0.00 2.85
1757 1772 5.744345 CAGACATTGTCGACCTATTGTAGAC 59.256 44.000 14.12 0.00 46.32 2.59
1758 1773 5.678871 GCAGACATTGTCGACCTATTGTAGA 60.679 44.000 14.12 0.00 37.67 2.59
1759 1774 4.504461 GCAGACATTGTCGACCTATTGTAG 59.496 45.833 14.12 8.45 37.67 2.74
1760 1775 4.430007 GCAGACATTGTCGACCTATTGTA 58.570 43.478 14.12 0.00 37.67 2.41
1761 1776 3.262420 GCAGACATTGTCGACCTATTGT 58.738 45.455 14.12 10.94 37.67 2.71
1762 1777 2.282555 CGCAGACATTGTCGACCTATTG 59.717 50.000 14.12 7.75 37.67 1.90
1763 1778 2.540515 CGCAGACATTGTCGACCTATT 58.459 47.619 14.12 0.00 37.67 1.73
1783 1798 1.474143 GCTTAGGAGGAGTGGATGTGC 60.474 57.143 0.00 0.00 0.00 4.57
1817 1832 4.912485 TTTTCGGCGCCACGACCA 62.912 61.111 28.98 5.15 43.37 4.02
1822 1837 1.082104 CTCAACTTTTCGGCGCCAC 60.082 57.895 28.98 0.00 0.00 5.01
1899 1914 2.081462 CCGCGTCCTAGGAACAAAAAT 58.919 47.619 14.65 0.00 0.00 1.82
1902 1917 0.037975 GTCCGCGTCCTAGGAACAAA 60.038 55.000 14.65 0.00 38.41 2.83
1924 1956 2.815211 GTCAGCGCCGAATGCTCA 60.815 61.111 2.29 0.00 41.72 4.26
1937 1969 1.203287 TGAGATTCCAGTGAGCGTCAG 59.797 52.381 0.00 0.00 0.00 3.51
1961 1993 4.526438 TGATCCTAGACATCAGTCCAGA 57.474 45.455 0.00 0.00 46.15 3.86
1965 1997 3.986572 CGCATTGATCCTAGACATCAGTC 59.013 47.826 0.00 0.00 45.31 3.51
1986 2019 3.186409 ACACTTCATTTCGTCCAATCACG 59.814 43.478 0.00 0.00 41.36 4.35
1989 2022 5.108385 ACAACACTTCATTTCGTCCAATC 57.892 39.130 0.00 0.00 0.00 2.67
2002 2035 4.439776 GCGGTTATTCAACAACAACACTTC 59.560 41.667 0.00 0.00 36.29 3.01
2005 2038 3.959943 AGCGGTTATTCAACAACAACAC 58.040 40.909 0.00 0.00 36.29 3.32
2010 2043 2.414161 GCTGGAGCGGTTATTCAACAAC 60.414 50.000 0.00 0.00 36.29 3.32
2048 2081 6.751514 ATTTATTGTCGCCAAACAGATACA 57.248 33.333 0.00 0.00 33.44 2.29
2074 2107 3.036075 ACACACTACGGCTTTTAGTCC 57.964 47.619 0.00 0.00 0.00 3.85
2106 2141 4.496341 CGCAGTCTAATAAATGCCCAACTG 60.496 45.833 0.00 0.00 35.22 3.16
2129 2164 1.300233 CGGCGGCTCAATAGTCCTC 60.300 63.158 7.61 0.00 0.00 3.71
2142 2177 2.572191 TTCACTACAAGTATCGGCGG 57.428 50.000 7.21 0.00 0.00 6.13
2143 2178 3.060363 GTGTTTCACTACAAGTATCGGCG 59.940 47.826 0.00 0.00 0.00 6.46
2144 2179 3.060363 CGTGTTTCACTACAAGTATCGGC 59.940 47.826 0.00 0.00 31.34 5.54
2160 2195 1.852067 GAACCATGGCGAGCGTGTTT 61.852 55.000 13.04 0.00 0.00 2.83
2170 2205 2.789409 AGGACTACTTGAACCATGGC 57.211 50.000 13.04 0.00 0.00 4.40
2182 2217 3.762823 ACTAGTGCCAAGTGTAGGACTAC 59.237 47.826 0.00 2.57 33.09 2.73
2196 2231 3.084786 AGGAAAATGCAAGACTAGTGCC 58.915 45.455 0.00 0.00 41.49 5.01
2197 2232 3.671702 GCAGGAAAATGCAAGACTAGTGC 60.672 47.826 0.00 0.00 45.77 4.40
2215 2250 5.976458 TGGAAAGGCTAAAATAAATGCAGG 58.024 37.500 0.00 0.00 0.00 4.85
2228 2263 4.138290 TGAAAACATCGTTGGAAAGGCTA 58.862 39.130 0.00 0.00 0.00 3.93
2238 2273 6.346919 CGTCTTCTCTCATTGAAAACATCGTT 60.347 38.462 0.00 0.00 0.00 3.85
2244 2279 6.354622 CGAAAACGTCTTCTCTCATTGAAAAC 59.645 38.462 0.00 0.00 0.00 2.43
2251 2286 3.058432 TCGACGAAAACGTCTTCTCTCAT 60.058 43.478 17.92 0.00 36.81 2.90
2269 2304 3.119708 ACCATAAACACCTCGTAGTCGAC 60.120 47.826 7.70 7.70 41.35 4.20
2270 2305 3.084039 ACCATAAACACCTCGTAGTCGA 58.916 45.455 0.00 0.00 44.12 4.20
2271 2306 3.119743 TCACCATAAACACCTCGTAGTCG 60.120 47.826 0.00 0.00 38.55 4.18
2285 2320 7.102993 TCTTGAGATTGACGAAATCACCATAA 58.897 34.615 14.85 3.06 46.21 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.