Multiple sequence alignment - TraesCS5A01G529700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G529700 chr5A 100.000 8767 0 0 1 8767 688953638 688944872 0.000000e+00 16190.0
1 TraesCS5A01G529700 chr4B 96.208 7042 184 28 1794 8767 650895165 650888139 0.000000e+00 11448.0
2 TraesCS5A01G529700 chr4B 84.685 999 69 41 502 1461 650896441 650895488 0.000000e+00 920.0
3 TraesCS5A01G529700 chr4B 84.502 271 23 7 1484 1751 650895515 650895261 5.250000e-62 250.0
4 TraesCS5A01G529700 chr4B 76.126 222 45 6 180 397 650897993 650897776 9.310000e-20 110.0
5 TraesCS5A01G529700 chr4D 95.801 7001 190 45 1837 8767 504280402 504273436 0.000000e+00 11204.0
6 TraesCS5A01G529700 chr4D 81.710 1345 118 73 180 1445 504282090 504280795 0.000000e+00 1003.0
7 TraesCS5A01G529700 chr4D 86.111 288 23 8 1508 1786 504280800 504280521 2.390000e-75 294.0
8 TraesCS5A01G529700 chrUn 99.488 391 2 0 5076 5466 479854443 479854053 0.000000e+00 712.0
9 TraesCS5A01G529700 chr3B 95.714 350 15 0 3925 4274 433639544 433639893 1.650000e-156 564.0
10 TraesCS5A01G529700 chr7D 84.848 297 39 1 6418 6708 591386719 591387015 2.390000e-75 294.0
11 TraesCS5A01G529700 chr6A 74.118 170 36 6 179 346 93524231 93524394 7.350000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G529700 chr5A 688944872 688953638 8766 True 16190 16190 100.00000 1 8767 1 chr5A.!!$R1 8766
1 TraesCS5A01G529700 chr4B 650888139 650897993 9854 True 3182 11448 85.38025 180 8767 4 chr4B.!!$R1 8587
2 TraesCS5A01G529700 chr4D 504273436 504282090 8654 True 4167 11204 87.87400 180 8767 3 chr4D.!!$R1 8587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.034059 GCTATGCGGACCACAGCTAT 59.966 55.000 0.00 0.0 38.02 2.97 F
126 127 0.036448 AGACGGAGAGACAACGAGGA 59.964 55.000 0.00 0.0 0.00 3.71 F
1433 2785 0.183731 CCCCAATCCAAGCCTACCTC 59.816 60.000 0.00 0.0 0.00 3.85 F
1474 2826 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.0 0.00 4.57 F
1558 2910 0.610232 AGATCAAACCAGGGCTGCAC 60.610 55.000 0.50 0.0 0.00 4.57 F
2333 3782 1.391485 CCGTTGAAGAGATGCAACTCG 59.609 52.381 17.21 6.0 41.56 4.18 F
3376 4866 2.227388 GCCTATTTGCCCTTGATCATCG 59.773 50.000 0.00 0.0 0.00 3.84 F
4131 5630 0.246635 GGCCAGAGTTAAGCAGACGA 59.753 55.000 0.00 0.0 0.00 4.20 F
4638 6137 1.610522 CTGAAAGAAAGCAGTGTGGGG 59.389 52.381 0.00 0.0 34.07 4.96 F
5190 6689 4.857871 CAAATGCTTGGATGAATTGCAG 57.142 40.909 0.00 0.0 37.07 4.41 F
6060 7559 4.260656 GCTAATTTCGAAAATGTCAGTGCG 59.739 41.667 15.66 0.0 0.00 5.34 F
6892 8394 3.379688 GCAGAGGCTTTGGAGGAAAATAG 59.620 47.826 7.20 0.0 36.96 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1936 3380 0.036199 TGGTTTTCCCGGTATCCACG 60.036 55.000 0.00 0.00 39.73 4.94 R
2121 3565 3.802948 AAGGTGGCTAGATAGAACACG 57.197 47.619 0.00 0.00 35.17 4.49 R
2354 3803 0.179078 AAACGGTTGCACGGTACTCA 60.179 50.000 1.59 0.00 38.39 3.41 R
2359 3808 1.033202 AAAGGAAACGGTTGCACGGT 61.033 50.000 7.67 0.00 38.39 4.83 R
3435 4925 1.531423 CCACAGCTTGATGCAAGACT 58.469 50.000 11.08 5.13 43.42 3.24 R
3788 5287 1.737838 TGGAGTATTTCCTTGCAGCG 58.262 50.000 0.00 0.00 46.92 5.18 R
4638 6137 1.339151 ACACGAGAATCCTGCCCTTTC 60.339 52.381 0.00 0.00 0.00 2.62 R
5514 7013 2.223479 TGCTTCCGACAGTTTTCTTTGC 60.223 45.455 0.00 0.00 0.00 3.68 R
5645 7144 2.232941 CCATGCAATTCCAACTTCTGCT 59.767 45.455 0.00 0.00 34.10 4.24 R
6892 8394 0.034337 TTGTTGAGCCCTGTACGTCC 59.966 55.000 0.00 0.00 0.00 4.79 R
7036 8538 0.853530 AGAACTTTTGGGAGGGCTGT 59.146 50.000 0.00 0.00 0.00 4.40 R
8323 9857 0.533491 TAACGTTCACCCTCCCGATG 59.467 55.000 2.82 0.00 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.282157 ATGCGGCTTGCTATGCGG 61.282 61.111 0.00 0.00 46.63 5.69
18 19 3.755526 ATGCGGCTTGCTATGCGGA 62.756 57.895 0.00 0.00 46.63 5.54
19 20 3.941836 GCGGCTTGCTATGCGGAC 61.942 66.667 0.00 0.00 41.73 4.79
20 21 3.272334 CGGCTTGCTATGCGGACC 61.272 66.667 0.00 0.00 33.45 4.46
21 22 2.124736 GGCTTGCTATGCGGACCA 60.125 61.111 0.00 0.00 0.00 4.02
22 23 2.472909 GGCTTGCTATGCGGACCAC 61.473 63.158 0.00 0.00 0.00 4.16
23 24 1.745115 GCTTGCTATGCGGACCACA 60.745 57.895 0.00 0.00 0.00 4.17
24 25 1.709147 GCTTGCTATGCGGACCACAG 61.709 60.000 0.00 0.00 0.00 3.66
25 26 1.709147 CTTGCTATGCGGACCACAGC 61.709 60.000 0.00 0.00 37.70 4.40
26 27 2.184020 TTGCTATGCGGACCACAGCT 62.184 55.000 0.00 0.00 38.02 4.24
27 28 1.326951 TGCTATGCGGACCACAGCTA 61.327 55.000 0.00 0.00 38.02 3.32
28 29 0.034059 GCTATGCGGACCACAGCTAT 59.966 55.000 0.00 0.00 38.02 2.97
29 30 1.937108 GCTATGCGGACCACAGCTATC 60.937 57.143 0.00 0.00 38.02 2.08
30 31 0.313987 TATGCGGACCACAGCTATCG 59.686 55.000 0.00 0.00 38.02 2.92
31 32 1.391933 ATGCGGACCACAGCTATCGA 61.392 55.000 0.00 0.00 38.02 3.59
32 33 1.589196 GCGGACCACAGCTATCGAC 60.589 63.158 0.00 0.00 34.59 4.20
33 34 1.298413 CGGACCACAGCTATCGACG 60.298 63.158 0.00 0.00 0.00 5.12
34 35 1.589196 GGACCACAGCTATCGACGC 60.589 63.158 0.48 0.48 0.00 5.19
35 36 1.589196 GACCACAGCTATCGACGCC 60.589 63.158 5.03 0.00 0.00 5.68
36 37 2.005960 GACCACAGCTATCGACGCCT 62.006 60.000 5.03 0.00 0.00 5.52
37 38 1.141881 CCACAGCTATCGACGCCTT 59.858 57.895 5.03 0.00 0.00 4.35
38 39 0.872021 CCACAGCTATCGACGCCTTC 60.872 60.000 5.03 0.00 0.00 3.46
39 40 0.101399 CACAGCTATCGACGCCTTCT 59.899 55.000 5.03 0.00 0.00 2.85
40 41 1.333931 CACAGCTATCGACGCCTTCTA 59.666 52.381 5.03 0.00 0.00 2.10
41 42 1.604755 ACAGCTATCGACGCCTTCTAG 59.395 52.381 5.03 0.00 0.00 2.43
42 43 1.604755 CAGCTATCGACGCCTTCTAGT 59.395 52.381 5.03 0.00 0.00 2.57
43 44 1.874872 AGCTATCGACGCCTTCTAGTC 59.125 52.381 5.03 0.00 0.00 2.59
44 45 1.874872 GCTATCGACGCCTTCTAGTCT 59.125 52.381 0.00 0.00 35.38 3.24
45 46 3.065655 GCTATCGACGCCTTCTAGTCTA 58.934 50.000 0.00 0.00 35.38 2.59
46 47 3.497640 GCTATCGACGCCTTCTAGTCTAA 59.502 47.826 0.00 0.00 35.38 2.10
47 48 4.024218 GCTATCGACGCCTTCTAGTCTAAA 60.024 45.833 0.00 0.00 35.38 1.85
48 49 5.335035 GCTATCGACGCCTTCTAGTCTAAAT 60.335 44.000 0.00 0.00 35.38 1.40
49 50 4.548991 TCGACGCCTTCTAGTCTAAATC 57.451 45.455 0.00 0.00 35.38 2.17
50 51 3.002042 TCGACGCCTTCTAGTCTAAATCG 59.998 47.826 0.00 0.00 35.38 3.34
51 52 3.002042 CGACGCCTTCTAGTCTAAATCGA 59.998 47.826 0.00 0.00 35.38 3.59
52 53 4.281264 GACGCCTTCTAGTCTAAATCGAC 58.719 47.826 0.00 0.00 34.74 4.20
53 54 3.242673 ACGCCTTCTAGTCTAAATCGACG 60.243 47.826 0.00 0.00 38.90 5.12
54 55 3.002042 CGCCTTCTAGTCTAAATCGACGA 59.998 47.826 0.00 0.00 38.90 4.20
55 56 4.319622 CGCCTTCTAGTCTAAATCGACGAT 60.320 45.833 4.05 4.05 38.90 3.73
56 57 5.521544 GCCTTCTAGTCTAAATCGACGATT 58.478 41.667 17.19 17.19 38.90 3.34
57 58 5.978322 GCCTTCTAGTCTAAATCGACGATTT 59.022 40.000 31.75 31.75 43.49 2.17
58 59 7.137426 GCCTTCTAGTCTAAATCGACGATTTA 58.863 38.462 30.83 30.83 41.64 1.40
59 60 7.808856 GCCTTCTAGTCTAAATCGACGATTTAT 59.191 37.037 32.22 23.59 41.63 1.40
60 61 9.680315 CCTTCTAGTCTAAATCGACGATTTATT 57.320 33.333 32.22 24.38 41.63 1.40
62 63 9.459640 TTCTAGTCTAAATCGACGATTTATTGG 57.540 33.333 32.22 23.89 41.63 3.16
63 64 6.526566 AGTCTAAATCGACGATTTATTGGC 57.473 37.500 32.22 25.28 41.63 4.52
64 65 5.465724 AGTCTAAATCGACGATTTATTGGCC 59.534 40.000 32.22 21.10 41.63 5.36
65 66 5.235616 GTCTAAATCGACGATTTATTGGCCA 59.764 40.000 32.22 17.48 41.63 5.36
66 67 5.995282 TCTAAATCGACGATTTATTGGCCAT 59.005 36.000 32.22 14.68 41.63 4.40
67 68 5.514274 AAATCGACGATTTATTGGCCATT 57.486 34.783 29.32 5.63 40.00 3.16
68 69 3.961477 TCGACGATTTATTGGCCATTG 57.039 42.857 6.09 0.00 0.00 2.82
69 70 3.275143 TCGACGATTTATTGGCCATTGT 58.725 40.909 6.09 0.00 0.00 2.71
70 71 3.692101 TCGACGATTTATTGGCCATTGTT 59.308 39.130 6.09 0.00 0.00 2.83
71 72 4.156922 TCGACGATTTATTGGCCATTGTTT 59.843 37.500 6.09 0.00 0.00 2.83
72 73 4.499040 CGACGATTTATTGGCCATTGTTTC 59.501 41.667 6.09 0.39 0.00 2.78
73 74 5.650543 GACGATTTATTGGCCATTGTTTCT 58.349 37.500 6.09 0.00 0.00 2.52
74 75 6.457663 CGACGATTTATTGGCCATTGTTTCTA 60.458 38.462 6.09 0.00 0.00 2.10
75 76 7.346751 ACGATTTATTGGCCATTGTTTCTAT 57.653 32.000 6.09 0.00 0.00 1.98
76 77 8.458573 ACGATTTATTGGCCATTGTTTCTATA 57.541 30.769 6.09 0.00 0.00 1.31
77 78 8.908903 ACGATTTATTGGCCATTGTTTCTATAA 58.091 29.630 6.09 1.73 0.00 0.98
78 79 9.398170 CGATTTATTGGCCATTGTTTCTATAAG 57.602 33.333 6.09 0.00 0.00 1.73
84 85 8.600449 TTGGCCATTGTTTCTATAAGTTTTTG 57.400 30.769 6.09 0.00 0.00 2.44
85 86 7.158021 TGGCCATTGTTTCTATAAGTTTTTGG 58.842 34.615 0.00 0.00 0.00 3.28
86 87 6.593770 GGCCATTGTTTCTATAAGTTTTTGGG 59.406 38.462 0.00 0.00 0.00 4.12
87 88 7.158697 GCCATTGTTTCTATAAGTTTTTGGGT 58.841 34.615 0.00 0.00 0.00 4.51
88 89 7.659799 GCCATTGTTTCTATAAGTTTTTGGGTT 59.340 33.333 0.00 0.00 0.00 4.11
89 90 9.554395 CCATTGTTTCTATAAGTTTTTGGGTTT 57.446 29.630 0.00 0.00 0.00 3.27
102 103 9.988815 AAGTTTTTGGGTTTAAAAATTTGCTTT 57.011 22.222 0.00 0.00 40.43 3.51
103 104 9.416794 AGTTTTTGGGTTTAAAAATTTGCTTTG 57.583 25.926 0.00 0.00 40.43 2.77
104 105 9.197694 GTTTTTGGGTTTAAAAATTTGCTTTGT 57.802 25.926 0.00 0.00 40.43 2.83
105 106 9.764363 TTTTTGGGTTTAAAAATTTGCTTTGTT 57.236 22.222 0.00 0.00 35.32 2.83
106 107 8.748380 TTTGGGTTTAAAAATTTGCTTTGTTG 57.252 26.923 0.00 0.00 0.00 3.33
107 108 7.687941 TGGGTTTAAAAATTTGCTTTGTTGA 57.312 28.000 0.00 0.00 0.00 3.18
108 109 7.756558 TGGGTTTAAAAATTTGCTTTGTTGAG 58.243 30.769 0.00 0.00 0.00 3.02
109 110 7.607991 TGGGTTTAAAAATTTGCTTTGTTGAGA 59.392 29.630 0.00 0.00 0.00 3.27
110 111 7.908082 GGGTTTAAAAATTTGCTTTGTTGAGAC 59.092 33.333 0.00 0.00 0.00 3.36
111 112 7.634432 GGTTTAAAAATTTGCTTTGTTGAGACG 59.366 33.333 0.00 0.00 0.00 4.18
112 113 5.717038 AAAAATTTGCTTTGTTGAGACGG 57.283 34.783 0.00 0.00 0.00 4.79
113 114 4.647424 AAATTTGCTTTGTTGAGACGGA 57.353 36.364 0.00 0.00 0.00 4.69
114 115 3.904136 ATTTGCTTTGTTGAGACGGAG 57.096 42.857 0.00 0.00 0.00 4.63
115 116 2.613026 TTGCTTTGTTGAGACGGAGA 57.387 45.000 0.00 0.00 0.00 3.71
116 117 2.154854 TGCTTTGTTGAGACGGAGAG 57.845 50.000 0.00 0.00 0.00 3.20
117 118 1.686587 TGCTTTGTTGAGACGGAGAGA 59.313 47.619 0.00 0.00 0.00 3.10
118 119 2.062519 GCTTTGTTGAGACGGAGAGAC 58.937 52.381 0.00 0.00 0.00 3.36
119 120 2.545952 GCTTTGTTGAGACGGAGAGACA 60.546 50.000 0.00 0.00 0.00 3.41
120 121 3.717707 CTTTGTTGAGACGGAGAGACAA 58.282 45.455 0.00 0.00 0.00 3.18
121 122 2.795175 TGTTGAGACGGAGAGACAAC 57.205 50.000 0.00 0.00 40.44 3.32
122 123 1.001706 TGTTGAGACGGAGAGACAACG 60.002 52.381 0.00 0.00 42.13 4.10
123 124 1.266175 GTTGAGACGGAGAGACAACGA 59.734 52.381 0.00 0.00 33.14 3.85
124 125 1.157585 TGAGACGGAGAGACAACGAG 58.842 55.000 0.00 0.00 0.00 4.18
125 126 0.448593 GAGACGGAGAGACAACGAGG 59.551 60.000 0.00 0.00 0.00 4.63
126 127 0.036448 AGACGGAGAGACAACGAGGA 59.964 55.000 0.00 0.00 0.00 3.71
127 128 1.096416 GACGGAGAGACAACGAGGAT 58.904 55.000 0.00 0.00 0.00 3.24
128 129 1.473278 GACGGAGAGACAACGAGGATT 59.527 52.381 0.00 0.00 0.00 3.01
129 130 1.202582 ACGGAGAGACAACGAGGATTG 59.797 52.381 0.00 0.00 35.59 2.67
130 131 1.646189 GGAGAGACAACGAGGATTGC 58.354 55.000 0.00 0.00 32.47 3.56
131 132 1.205893 GGAGAGACAACGAGGATTGCT 59.794 52.381 0.00 0.00 32.47 3.91
132 133 2.535331 GAGAGACAACGAGGATTGCTC 58.465 52.381 0.00 0.00 35.10 4.26
133 134 1.895798 AGAGACAACGAGGATTGCTCA 59.104 47.619 5.99 0.00 36.25 4.26
134 135 1.996191 GAGACAACGAGGATTGCTCAC 59.004 52.381 5.99 0.00 35.05 3.51
135 136 0.716108 GACAACGAGGATTGCTCACG 59.284 55.000 5.99 0.00 32.47 4.35
136 137 0.317160 ACAACGAGGATTGCTCACGA 59.683 50.000 5.99 0.00 32.47 4.35
137 138 0.716108 CAACGAGGATTGCTCACGAC 59.284 55.000 5.99 0.00 0.00 4.34
138 139 0.732880 AACGAGGATTGCTCACGACG 60.733 55.000 5.99 0.00 0.00 5.12
139 140 2.508891 CGAGGATTGCTCACGACGC 61.509 63.158 5.99 0.00 0.00 5.19
140 141 2.507102 AGGATTGCTCACGACGCG 60.507 61.111 3.53 3.53 0.00 6.01
141 142 4.210304 GGATTGCTCACGACGCGC 62.210 66.667 5.73 0.00 0.00 6.86
142 143 4.210304 GATTGCTCACGACGCGCC 62.210 66.667 5.73 0.00 0.00 6.53
147 148 4.829518 CTCACGACGCGCCATCGA 62.830 66.667 29.14 11.62 42.25 3.59
148 149 4.187810 TCACGACGCGCCATCGAT 62.188 61.111 29.14 14.33 42.25 3.59
149 150 3.976375 CACGACGCGCCATCGATG 61.976 66.667 29.14 18.76 42.25 3.84
150 151 4.187810 ACGACGCGCCATCGATGA 62.188 61.111 29.14 0.00 42.25 2.92
151 152 2.954346 CGACGCGCCATCGATGAA 60.954 61.111 26.86 0.00 42.25 2.57
152 153 2.302952 CGACGCGCCATCGATGAAT 61.303 57.895 26.86 6.75 42.25 2.57
153 154 1.202568 GACGCGCCATCGATGAATG 59.797 57.895 26.86 15.67 38.10 2.67
154 155 1.490693 GACGCGCCATCGATGAATGT 61.491 55.000 26.86 17.65 38.10 2.71
155 156 0.249280 ACGCGCCATCGATGAATGTA 60.249 50.000 26.86 0.00 38.10 2.29
156 157 0.436150 CGCGCCATCGATGAATGTAG 59.564 55.000 26.86 9.71 38.10 2.74
157 158 0.792640 GCGCCATCGATGAATGTAGG 59.207 55.000 26.86 9.13 38.10 3.18
158 159 1.605457 GCGCCATCGATGAATGTAGGA 60.605 52.381 26.86 0.00 38.10 2.94
159 160 2.332104 CGCCATCGATGAATGTAGGAG 58.668 52.381 26.86 6.01 38.10 3.69
160 161 2.029918 CGCCATCGATGAATGTAGGAGA 60.030 50.000 26.86 0.00 38.10 3.71
161 162 3.552890 CGCCATCGATGAATGTAGGAGAA 60.553 47.826 26.86 0.00 38.10 2.87
162 163 4.380531 GCCATCGATGAATGTAGGAGAAA 58.619 43.478 26.86 0.00 0.00 2.52
163 164 4.999950 GCCATCGATGAATGTAGGAGAAAT 59.000 41.667 26.86 0.00 0.00 2.17
164 165 6.166279 GCCATCGATGAATGTAGGAGAAATA 58.834 40.000 26.86 0.00 0.00 1.40
165 166 6.650807 GCCATCGATGAATGTAGGAGAAATAA 59.349 38.462 26.86 0.00 0.00 1.40
166 167 7.148507 GCCATCGATGAATGTAGGAGAAATAAG 60.149 40.741 26.86 4.27 0.00 1.73
167 168 8.090831 CCATCGATGAATGTAGGAGAAATAAGA 58.909 37.037 26.86 0.00 0.00 2.10
168 169 8.920665 CATCGATGAATGTAGGAGAAATAAGAC 58.079 37.037 21.02 0.00 0.00 3.01
169 170 8.239038 TCGATGAATGTAGGAGAAATAAGACT 57.761 34.615 0.00 0.00 0.00 3.24
170 171 8.696374 TCGATGAATGTAGGAGAAATAAGACTT 58.304 33.333 0.00 0.00 0.00 3.01
171 172 9.319143 CGATGAATGTAGGAGAAATAAGACTTT 57.681 33.333 0.00 0.00 0.00 2.66
173 174 8.792830 TGAATGTAGGAGAAATAAGACTTTGG 57.207 34.615 0.00 0.00 0.00 3.28
174 175 8.383175 TGAATGTAGGAGAAATAAGACTTTGGT 58.617 33.333 0.00 0.00 0.00 3.67
175 176 8.567285 AATGTAGGAGAAATAAGACTTTGGTG 57.433 34.615 0.00 0.00 0.00 4.17
176 177 6.472887 TGTAGGAGAAATAAGACTTTGGTGG 58.527 40.000 0.00 0.00 0.00 4.61
177 178 4.336280 AGGAGAAATAAGACTTTGGTGGC 58.664 43.478 0.00 0.00 0.00 5.01
178 179 4.079253 GGAGAAATAAGACTTTGGTGGCA 58.921 43.478 0.00 0.00 0.00 4.92
211 212 7.584108 GGCAATTTATATTGACGTGATGATGA 58.416 34.615 9.76 0.00 43.12 2.92
266 271 4.138290 TCAAATTAAACAGACCGAGGCAA 58.862 39.130 0.00 0.00 0.00 4.52
276 281 4.196193 CAGACCGAGGCAAATTTACCATA 58.804 43.478 10.13 0.00 0.00 2.74
279 284 5.129815 AGACCGAGGCAAATTTACCATACTA 59.870 40.000 10.13 0.00 0.00 1.82
280 285 5.121105 ACCGAGGCAAATTTACCATACTAC 58.879 41.667 10.13 0.00 0.00 2.73
281 286 5.104652 ACCGAGGCAAATTTACCATACTACT 60.105 40.000 10.13 0.00 0.00 2.57
282 287 5.236478 CCGAGGCAAATTTACCATACTACTG 59.764 44.000 10.13 0.00 0.00 2.74
283 288 5.236478 CGAGGCAAATTTACCATACTACTGG 59.764 44.000 10.13 0.00 42.35 4.00
284 289 4.887655 AGGCAAATTTACCATACTACTGGC 59.112 41.667 10.13 0.00 40.15 4.85
285 290 4.887655 GGCAAATTTACCATACTACTGGCT 59.112 41.667 2.30 0.00 40.15 4.75
297 302 8.545472 ACCATACTACTGGCTAACTAAATTTGA 58.455 33.333 0.00 0.00 40.15 2.69
298 303 8.827677 CCATACTACTGGCTAACTAAATTTGAC 58.172 37.037 0.00 0.00 0.00 3.18
335 341 6.870965 ACATAATTTGCAATAAAAGCGTTGGA 59.129 30.769 0.00 0.00 33.85 3.53
388 394 5.677567 TGGATATTCGGGTCTAAAGAAACC 58.322 41.667 0.00 0.00 34.64 3.27
396 402 4.569719 GGTCTAAAGAAACCCTCATCCA 57.430 45.455 0.00 0.00 0.00 3.41
397 403 4.918588 GGTCTAAAGAAACCCTCATCCAA 58.081 43.478 0.00 0.00 0.00 3.53
410 416 5.203528 CCCTCATCCAAATCCATGTTACTT 58.796 41.667 0.00 0.00 0.00 2.24
412 418 6.125029 CCTCATCCAAATCCATGTTACTTCT 58.875 40.000 0.00 0.00 0.00 2.85
438 472 2.821546 CACTAGCAGCGGTAATTAGCA 58.178 47.619 14.62 0.00 35.48 3.49
442 476 1.482593 AGCAGCGGTAATTAGCAGAGT 59.517 47.619 14.62 0.00 35.48 3.24
496 1726 1.554160 CAGTGTGCTGGAGGAGAGAAT 59.446 52.381 0.00 0.00 39.01 2.40
532 1775 2.590007 GCAGCACTATGCCGGGAG 60.590 66.667 2.18 0.00 46.52 4.30
533 1776 3.094062 GCAGCACTATGCCGGGAGA 62.094 63.158 2.18 0.00 46.52 3.71
535 1778 1.075970 AGCACTATGCCGGGAGAGA 60.076 57.895 25.37 0.00 46.52 3.10
539 1782 1.482593 CACTATGCCGGGAGAGAAAGT 59.517 52.381 25.37 8.15 0.00 2.66
581 1833 1.298157 ACCCTACCTCTCCTCCTCCC 61.298 65.000 0.00 0.00 0.00 4.30
582 1834 1.544703 CCTACCTCTCCTCCTCCCC 59.455 68.421 0.00 0.00 0.00 4.81
583 1835 1.544703 CTACCTCTCCTCCTCCCCC 59.455 68.421 0.00 0.00 0.00 5.40
603 1855 5.006386 CCCCTCCATTATTCTATTGCTGTC 58.994 45.833 0.00 0.00 0.00 3.51
612 1864 9.438291 CATTATTCTATTGCTGTCTTTTAACCG 57.562 33.333 0.00 0.00 0.00 4.44
680 1941 1.999735 CGCCTTAGAAATCTCGCAACA 59.000 47.619 0.00 0.00 0.00 3.33
760 2025 5.317808 GCTCCCTAATTAAGATTCCCCTTC 58.682 45.833 0.00 0.00 0.00 3.46
761 2026 5.073827 GCTCCCTAATTAAGATTCCCCTTCT 59.926 44.000 0.00 0.00 0.00 2.85
762 2027 6.745759 GCTCCCTAATTAAGATTCCCCTTCTC 60.746 46.154 0.00 0.00 0.00 2.87
767 2032 2.980699 AAGATTCCCCTTCTCCTCCT 57.019 50.000 0.00 0.00 0.00 3.69
774 2039 0.341609 CCCTTCTCCTCCTCCTCCTT 59.658 60.000 0.00 0.00 0.00 3.36
826 2092 2.651863 CGGCGCAATGATTTCCGC 60.652 61.111 10.83 10.42 45.15 5.54
872 2138 2.177594 GAGCACACTAGCCAGCAGGT 62.178 60.000 0.00 0.00 37.19 4.00
927 2199 3.625632 ATCTGCTCCGGGTGGTCCT 62.626 63.158 0.00 0.00 36.30 3.85
928 2200 2.238319 ATCTGCTCCGGGTGGTCCTA 62.238 60.000 0.00 0.00 36.30 2.94
929 2201 2.682494 TGCTCCGGGTGGTCCTAC 60.682 66.667 0.00 0.00 36.30 3.18
930 2202 3.834799 GCTCCGGGTGGTCCTACG 61.835 72.222 0.00 0.00 36.30 3.51
934 2206 3.687102 CGGGTGGTCCTACGCACA 61.687 66.667 0.00 0.00 33.55 4.57
935 2207 2.264794 GGGTGGTCCTACGCACAG 59.735 66.667 0.00 0.00 34.07 3.66
1069 2372 1.983972 CTTCGAGTTCAGGTTCTCCG 58.016 55.000 0.00 0.00 39.05 4.63
1143 2449 1.049289 CCTCGCCCCCTTAGCTTACT 61.049 60.000 0.00 0.00 0.00 2.24
1144 2450 1.700955 CTCGCCCCCTTAGCTTACTA 58.299 55.000 0.00 0.00 0.00 1.82
1145 2451 1.340568 CTCGCCCCCTTAGCTTACTAC 59.659 57.143 0.00 0.00 0.00 2.73
1157 2463 3.025262 AGCTTACTACCACTAGCACCTC 58.975 50.000 0.00 0.00 36.11 3.85
1254 2564 2.542824 GCTCCTCTGCTTGATCTACGAC 60.543 54.545 0.00 0.00 0.00 4.34
1317 2656 5.308825 CCCGCCTATGTAGAGATTTCATTT 58.691 41.667 0.00 0.00 0.00 2.32
1433 2785 0.183731 CCCCAATCCAAGCCTACCTC 59.816 60.000 0.00 0.00 0.00 3.85
1461 2813 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1462 2814 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1463 2815 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1464 2816 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1465 2817 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1466 2818 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1467 2819 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1468 2820 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1469 2821 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1470 2822 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1471 2823 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1472 2824 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1473 2825 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1474 2826 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
1475 2827 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
1476 2828 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
1477 2829 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
1495 2847 4.918060 CGCGCGTGTGTGTGTGTG 62.918 66.667 24.19 0.00 0.00 3.82
1496 2848 3.860125 GCGCGTGTGTGTGTGTGT 61.860 61.111 8.43 0.00 0.00 3.72
1497 2849 2.021243 CGCGTGTGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
1498 2850 2.277247 GCGTGTGTGTGTGTGTGC 60.277 61.111 0.00 0.00 0.00 4.57
1499 2851 2.021243 CGTGTGTGTGTGTGTGCG 59.979 61.111 0.00 0.00 0.00 5.34
1500 2852 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
1501 2853 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
1502 2854 3.860125 GTGTGTGTGTGTGCGCGT 61.860 61.111 8.43 0.00 0.00 6.01
1503 2855 3.858989 TGTGTGTGTGTGCGCGTG 61.859 61.111 8.43 0.00 0.00 5.34
1551 2903 2.751259 CCATGTCACAGATCAAACCAGG 59.249 50.000 0.00 0.00 0.00 4.45
1553 2905 1.168714 GTCACAGATCAAACCAGGGC 58.831 55.000 0.00 0.00 0.00 5.19
1558 2910 0.610232 AGATCAAACCAGGGCTGCAC 60.610 55.000 0.50 0.00 0.00 4.57
1617 2972 9.665264 AGTTTTTCTAGAAGAATAAAAAGCACG 57.335 29.630 11.26 0.00 33.67 5.34
1726 3085 3.434940 TTTCTCTAAGGGCAGGTTTCC 57.565 47.619 0.00 0.00 0.00 3.13
1759 3118 4.315803 CCAGTGAACCTGTCTTACGATTT 58.684 43.478 0.00 0.00 39.74 2.17
1771 3130 8.837059 CCTGTCTTACGATTTTTATTTTTGTCG 58.163 33.333 0.00 0.00 35.42 4.35
1776 3135 9.983431 CTTACGATTTTTATTTTTGTCGGAAAC 57.017 29.630 0.00 0.00 32.28 2.78
1786 3145 3.347958 TTGTCGGAAACAGCATTCAAC 57.652 42.857 0.00 0.00 39.58 3.18
1787 3146 2.571212 TGTCGGAAACAGCATTCAACT 58.429 42.857 0.00 0.00 32.81 3.16
1788 3147 2.948979 TGTCGGAAACAGCATTCAACTT 59.051 40.909 0.00 0.00 32.81 2.66
1789 3148 3.003275 TGTCGGAAACAGCATTCAACTTC 59.997 43.478 0.00 0.00 32.81 3.01
1790 3149 3.003275 GTCGGAAACAGCATTCAACTTCA 59.997 43.478 0.00 0.00 0.00 3.02
1791 3150 3.250762 TCGGAAACAGCATTCAACTTCAG 59.749 43.478 0.00 0.00 0.00 3.02
1810 3254 3.005554 CAGTTTCAGTATGCTCAGGGTG 58.994 50.000 0.00 0.00 34.76 4.61
1811 3255 1.740025 GTTTCAGTATGCTCAGGGTGC 59.260 52.381 0.00 0.00 34.76 5.01
1854 3298 2.165030 ACGCGCTAGGTGTATTTACTGT 59.835 45.455 5.73 0.00 37.67 3.55
1936 3380 4.342665 AGGATGTTCCTTTCGATAGTCTCC 59.657 45.833 2.13 1.52 46.91 3.71
2017 3461 2.555006 CCAATGGCCCGATTCCATATCA 60.555 50.000 0.00 0.00 43.13 2.15
2102 3546 4.946445 TGTTGTTTCTGTGGTACGTATGA 58.054 39.130 0.00 0.00 0.00 2.15
2121 3565 7.148507 ACGTATGAGTATTCATAGCGTACTACC 60.149 40.741 22.05 5.79 44.73 3.18
2158 3606 5.682212 GCCACCTTTGTTTTTCAATCTCACT 60.682 40.000 0.00 0.00 35.84 3.41
2160 3608 5.750067 CACCTTTGTTTTTCAATCTCACTGG 59.250 40.000 0.00 0.00 35.84 4.00
2217 3666 5.163322 TGTTTTGCTGAACAATTCAATCCCT 60.163 36.000 3.47 0.00 39.58 4.20
2333 3782 1.391485 CCGTTGAAGAGATGCAACTCG 59.609 52.381 17.21 6.00 41.56 4.18
2354 3803 2.956333 GGGAACAGTTTTGCAGGTAAGT 59.044 45.455 0.00 0.00 0.00 2.24
2359 3808 5.031066 ACAGTTTTGCAGGTAAGTGAGTA 57.969 39.130 15.69 0.00 0.00 2.59
2409 3858 2.613026 TTGGGTGCTCGTGTATATGG 57.387 50.000 0.00 0.00 0.00 2.74
2431 3880 4.142038 GTCCTGTAACCTGAAAATGGTGT 58.858 43.478 0.00 0.00 37.93 4.16
2452 3901 6.043411 GTGTCAACTCACTCAACTCTTAGTT 58.957 40.000 0.00 0.00 35.82 2.24
2565 4014 6.909909 GTTGGGGTAACTAATTCAACTTGAG 58.090 40.000 0.00 0.00 36.34 3.02
2570 4019 9.070179 GGGGTAACTAATTCAACTTGAGTTTTA 57.930 33.333 4.98 0.00 35.83 1.52
2579 4028 8.753497 ATTCAACTTGAGTTTTACTCTTTCCT 57.247 30.769 8.18 0.00 45.27 3.36
2948 4398 5.728351 TCAGAACAGTGTTTCCTTTAACG 57.272 39.130 10.45 0.00 0.00 3.18
3084 4536 5.982356 TGATGATACCACTCTTCAGGAAAG 58.018 41.667 0.00 0.00 36.22 2.62
3087 4539 4.838423 TGATACCACTCTTCAGGAAAGTCA 59.162 41.667 0.00 0.00 36.31 3.41
3122 4574 2.543777 TGACTGTTTCTGGTGCCTAC 57.456 50.000 0.00 0.00 0.00 3.18
3155 4607 9.952188 CGAGAAATATGTCTCTTATTGTCAGTA 57.048 33.333 18.78 0.00 41.69 2.74
3195 4647 8.818141 TCACAAGAATATTCGATTACAGATCC 57.182 34.615 9.78 0.00 0.00 3.36
3197 4649 9.045223 CACAAGAATATTCGATTACAGATCCAA 57.955 33.333 9.78 0.00 0.00 3.53
3218 4670 5.458891 CAAGTTCTTCTCTTTTCCATGCTG 58.541 41.667 0.00 0.00 0.00 4.41
3312 4801 8.562892 CAGTTACATACTTCCAATCCATGAATC 58.437 37.037 0.00 0.00 33.85 2.52
3366 4856 3.608316 TGTTCATTTGCCTATTTGCCC 57.392 42.857 0.00 0.00 0.00 5.36
3376 4866 2.227388 GCCTATTTGCCCTTGATCATCG 59.773 50.000 0.00 0.00 0.00 3.84
3477 4967 9.231297 GTGGCTCCACATGTATATAAATTGTAT 57.769 33.333 13.81 0.00 45.53 2.29
3547 5042 8.148351 GCCCTGTCAGAGTATTATGTGTAAATA 58.852 37.037 0.00 0.00 0.00 1.40
3591 5090 4.630644 TCAGGAAATGAGTTTCTCAGCT 57.369 40.909 5.71 0.00 44.08 4.24
3609 5108 2.232298 CTTCAGGGTCTCACCGGAGC 62.232 65.000 9.46 0.00 39.83 4.70
3788 5287 1.515521 CGGGCTTCAGGTCCAAACAC 61.516 60.000 0.00 0.00 40.36 3.32
3840 5339 3.947612 AATGGGATTGCTCAGTCATCT 57.052 42.857 0.00 0.00 0.00 2.90
3978 5477 2.476320 GGCGCTGAAGAGGGAATGC 61.476 63.158 7.64 0.00 33.95 3.56
4047 5546 1.522355 ACATGCTGAGCGGGATTCG 60.522 57.895 0.00 0.00 42.76 3.34
4053 5552 0.738975 CTGAGCGGGATTCGTACAGA 59.261 55.000 0.00 0.00 42.02 3.41
4056 5555 1.067212 GAGCGGGATTCGTACAGACAT 59.933 52.381 0.00 0.00 41.72 3.06
4131 5630 0.246635 GGCCAGAGTTAAGCAGACGA 59.753 55.000 0.00 0.00 0.00 4.20
4209 5708 7.925043 AGTAGAAGACGAGATGAAGTTTCTA 57.075 36.000 0.00 0.00 0.00 2.10
4638 6137 1.610522 CTGAAAGAAAGCAGTGTGGGG 59.389 52.381 0.00 0.00 34.07 4.96
4729 6228 6.688073 ATGAACTGGAAGAGGAACTTAGAA 57.312 37.500 0.00 0.00 41.55 2.10
4995 6494 8.245195 ACCAATTTAGAGAAGATCTAGAGGAC 57.755 38.462 0.00 0.00 41.57 3.85
5190 6689 4.857871 CAAATGCTTGGATGAATTGCAG 57.142 40.909 0.00 0.00 37.07 4.41
5334 6833 9.601217 GAGCTTGAACAGGAAAATATAGAGTTA 57.399 33.333 0.00 0.00 0.00 2.24
5514 7013 7.506474 AGTTTAAACAAAAACAGCAAGAAACG 58.494 30.769 20.06 0.00 40.97 3.60
5703 7202 5.045286 ACAAGAGCAGGAATTGGATAACTCT 60.045 40.000 0.00 0.00 34.85 3.24
5736 7235 8.704668 AGGATCCTTGATTTTTGTAAAACAGTT 58.295 29.630 9.02 0.00 29.33 3.16
5856 7355 7.589221 CACACAGAGCAAGAAGAAAAGATAAAC 59.411 37.037 0.00 0.00 0.00 2.01
6060 7559 4.260656 GCTAATTTCGAAAATGTCAGTGCG 59.739 41.667 15.66 0.00 0.00 5.34
6316 7815 7.778853 AGCAAATGATGGAAGAAATATCTGACT 59.221 33.333 0.00 0.00 35.59 3.41
6784 8286 5.585390 CATTGATGTTCCTAATGTCTTGGC 58.415 41.667 0.00 0.00 0.00 4.52
6842 8344 8.539117 TTGGAGATTCTACAGATATTCAGTCA 57.461 34.615 0.00 0.00 0.00 3.41
6892 8394 3.379688 GCAGAGGCTTTGGAGGAAAATAG 59.620 47.826 7.20 0.00 36.96 1.73
6895 8397 3.948473 GAGGCTTTGGAGGAAAATAGGAC 59.052 47.826 0.00 0.00 0.00 3.85
7056 8558 1.217942 ACAGCCCTCCCAAAAGTTCTT 59.782 47.619 0.00 0.00 0.00 2.52
7149 8652 2.357637 GCAATTGCTTATTAGTCGGGCA 59.642 45.455 23.21 0.00 38.21 5.36
7178 8681 8.737168 AAATAGCTTCTACAATCTGTTATGCA 57.263 30.769 0.00 0.00 0.00 3.96
7191 8694 9.338291 CAATCTGTTATGCATTGCAGTATATTC 57.662 33.333 17.52 4.13 43.65 1.75
7246 8749 3.524095 TGAACTGGGACCATGTGAATT 57.476 42.857 0.00 0.00 0.00 2.17
7247 8750 3.156293 TGAACTGGGACCATGTGAATTG 58.844 45.455 0.00 0.00 0.00 2.32
7259 8762 6.349300 ACCATGTGAATTGACTAGGTATGAC 58.651 40.000 9.47 0.00 0.00 3.06
7337 8840 8.301252 TGAAGCTAGATTGTACACTGGTATTA 57.699 34.615 0.00 0.00 0.00 0.98
7371 8874 5.654650 TGAAATCTGTTGGTTACCACTGTTT 59.345 36.000 2.39 1.53 30.78 2.83
7399 8902 9.517868 TGGAAAATCATTTCATTTTATTGGCTT 57.482 25.926 3.97 0.00 45.53 4.35
7421 8924 3.967326 TGAGGGATTGTCCATACTGTAGG 59.033 47.826 0.00 0.00 38.64 3.18
7437 8940 4.774726 ACTGTAGGTATATGATGGCAGAGG 59.225 45.833 0.00 0.00 0.00 3.69
7487 8990 4.914581 AGGGAAAATTATAGAGGACTCCCC 59.085 45.833 0.00 0.00 41.99 4.81
7559 9062 9.709495 GCTGTCTATATTCAGAAGATCAGAATT 57.291 33.333 8.46 0.00 34.92 2.17
7780 9287 4.104086 TGGTTCTAACATGATGGAGACCT 58.896 43.478 0.00 0.00 0.00 3.85
7781 9288 4.536090 TGGTTCTAACATGATGGAGACCTT 59.464 41.667 0.00 0.00 0.00 3.50
7957 9464 6.594547 GGGTAGAAGATACTTTTTGTCCAGTC 59.405 42.308 0.00 0.00 0.00 3.51
8035 9542 1.655484 TGTCTGCGCCATGACAATAG 58.345 50.000 20.34 2.81 39.82 1.73
8036 9543 0.940126 GTCTGCGCCATGACAATAGG 59.060 55.000 16.70 0.00 33.75 2.57
8051 9576 6.577103 TGACAATAGGACTGATGTCAGATTC 58.423 40.000 16.41 4.79 45.14 2.52
8163 9690 3.883489 CCGGAAGAAAAGAAAAGGTCACT 59.117 43.478 0.00 0.00 0.00 3.41
8177 9709 4.278975 AGGTCACTTTCAAGAGATGGTC 57.721 45.455 0.00 0.00 0.00 4.02
8203 9735 4.337555 CCTGAAGAGGCAAATATTGTGAGG 59.662 45.833 0.00 0.00 30.52 3.86
8280 9814 8.816640 ATTCCGATTTAACCAATCAATTATGC 57.183 30.769 0.00 0.00 41.51 3.14
8311 9845 6.367374 TGTGTTTCTTCATCCAGTATACCA 57.633 37.500 0.00 0.00 0.00 3.25
8323 9857 6.282199 TCCAGTATACCAGTTTCTCAGTTC 57.718 41.667 0.00 0.00 0.00 3.01
8325 9859 6.440647 TCCAGTATACCAGTTTCTCAGTTCAT 59.559 38.462 0.00 0.00 0.00 2.57
8555 10089 9.129209 GAAGGTGTCAACTGCTTAATTATTTTC 57.871 33.333 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.282157 CCGCATAGCAAGCCGCAT 61.282 61.111 0.00 0.00 46.13 4.73
1 2 4.465480 TCCGCATAGCAAGCCGCA 62.465 61.111 0.00 0.00 46.13 5.69
2 3 3.941836 GTCCGCATAGCAAGCCGC 61.942 66.667 0.00 0.00 42.91 6.53
3 4 3.272334 GGTCCGCATAGCAAGCCG 61.272 66.667 0.00 0.00 0.00 5.52
4 5 2.124736 TGGTCCGCATAGCAAGCC 60.125 61.111 0.00 0.00 0.00 4.35
5 6 1.709147 CTGTGGTCCGCATAGCAAGC 61.709 60.000 5.36 0.00 0.00 4.01
6 7 1.709147 GCTGTGGTCCGCATAGCAAG 61.709 60.000 5.36 0.00 34.64 4.01
7 8 1.745115 GCTGTGGTCCGCATAGCAA 60.745 57.895 5.36 0.00 34.64 3.91
8 9 1.326951 TAGCTGTGGTCCGCATAGCA 61.327 55.000 16.50 3.13 36.87 3.49
9 10 0.034059 ATAGCTGTGGTCCGCATAGC 59.966 55.000 5.36 7.07 34.71 2.97
10 11 1.667177 CGATAGCTGTGGTCCGCATAG 60.667 57.143 5.36 0.00 0.00 2.23
11 12 0.313987 CGATAGCTGTGGTCCGCATA 59.686 55.000 5.36 0.00 0.00 3.14
12 13 1.068083 CGATAGCTGTGGTCCGCAT 59.932 57.895 5.36 0.00 0.00 4.73
13 14 2.049767 TCGATAGCTGTGGTCCGCA 61.050 57.895 4.73 4.73 0.00 5.69
14 15 1.589196 GTCGATAGCTGTGGTCCGC 60.589 63.158 0.00 0.00 0.00 5.54
15 16 1.298413 CGTCGATAGCTGTGGTCCG 60.298 63.158 0.00 0.00 0.00 4.79
16 17 1.589196 GCGTCGATAGCTGTGGTCC 60.589 63.158 0.00 0.00 0.00 4.46
17 18 1.589196 GGCGTCGATAGCTGTGGTC 60.589 63.158 14.06 0.00 34.52 4.02
18 19 1.605058 AAGGCGTCGATAGCTGTGGT 61.605 55.000 14.06 0.00 34.52 4.16
19 20 0.872021 GAAGGCGTCGATAGCTGTGG 60.872 60.000 14.06 0.00 34.52 4.17
20 21 0.101399 AGAAGGCGTCGATAGCTGTG 59.899 55.000 14.06 0.00 34.52 3.66
21 22 1.604755 CTAGAAGGCGTCGATAGCTGT 59.395 52.381 14.06 0.00 34.52 4.40
22 23 1.604755 ACTAGAAGGCGTCGATAGCTG 59.395 52.381 14.06 3.31 34.52 4.24
23 24 1.874872 GACTAGAAGGCGTCGATAGCT 59.125 52.381 14.06 0.00 34.52 3.32
24 25 1.874872 AGACTAGAAGGCGTCGATAGC 59.125 52.381 0.00 7.23 35.38 2.97
25 26 5.670149 TTTAGACTAGAAGGCGTCGATAG 57.330 43.478 0.00 0.00 35.38 2.08
26 27 5.107182 CGATTTAGACTAGAAGGCGTCGATA 60.107 44.000 0.00 0.00 35.38 2.92
27 28 4.319622 CGATTTAGACTAGAAGGCGTCGAT 60.320 45.833 0.00 0.00 35.38 3.59
28 29 3.002042 CGATTTAGACTAGAAGGCGTCGA 59.998 47.826 0.00 0.00 35.38 4.20
29 30 3.002042 TCGATTTAGACTAGAAGGCGTCG 59.998 47.826 0.00 0.00 35.38 5.12
30 31 4.281264 GTCGATTTAGACTAGAAGGCGTC 58.719 47.826 0.00 0.00 38.09 5.19
31 32 3.242673 CGTCGATTTAGACTAGAAGGCGT 60.243 47.826 0.00 0.00 38.90 5.68
32 33 3.002042 TCGTCGATTTAGACTAGAAGGCG 59.998 47.826 0.00 1.26 38.90 5.52
33 34 4.548991 TCGTCGATTTAGACTAGAAGGC 57.451 45.455 0.00 0.00 38.90 4.35
34 35 9.680315 AATAAATCGTCGATTTAGACTAGAAGG 57.320 33.333 32.38 0.00 44.30 3.46
36 37 9.459640 CCAATAAATCGTCGATTTAGACTAGAA 57.540 33.333 32.38 17.81 44.30 2.10
37 38 7.594015 GCCAATAAATCGTCGATTTAGACTAGA 59.406 37.037 32.38 18.38 44.30 2.43
38 39 7.148787 GGCCAATAAATCGTCGATTTAGACTAG 60.149 40.741 32.38 23.00 44.30 2.57
39 40 6.643770 GGCCAATAAATCGTCGATTTAGACTA 59.356 38.462 32.38 19.52 44.30 2.59
40 41 5.465724 GGCCAATAAATCGTCGATTTAGACT 59.534 40.000 32.38 21.72 44.30 3.24
41 42 5.235616 TGGCCAATAAATCGTCGATTTAGAC 59.764 40.000 32.38 25.11 44.30 2.59
42 43 5.361427 TGGCCAATAAATCGTCGATTTAGA 58.639 37.500 32.38 20.67 44.30 2.10
43 44 5.666969 TGGCCAATAAATCGTCGATTTAG 57.333 39.130 32.38 23.98 44.30 1.85
44 45 6.038825 ACAATGGCCAATAAATCGTCGATTTA 59.961 34.615 31.81 31.81 44.88 1.40
45 46 5.163561 ACAATGGCCAATAAATCGTCGATTT 60.164 36.000 30.05 30.05 43.49 2.17
46 47 4.338118 ACAATGGCCAATAAATCGTCGATT 59.662 37.500 10.96 14.69 33.25 3.34
47 48 3.882888 ACAATGGCCAATAAATCGTCGAT 59.117 39.130 10.96 0.75 0.00 3.59
48 49 3.275143 ACAATGGCCAATAAATCGTCGA 58.725 40.909 10.96 0.00 0.00 4.20
49 50 3.691049 ACAATGGCCAATAAATCGTCG 57.309 42.857 10.96 0.00 0.00 5.12
50 51 5.650543 AGAAACAATGGCCAATAAATCGTC 58.349 37.500 10.96 0.00 0.00 4.20
51 52 5.659440 AGAAACAATGGCCAATAAATCGT 57.341 34.783 10.96 0.00 0.00 3.73
52 53 9.398170 CTTATAGAAACAATGGCCAATAAATCG 57.602 33.333 10.96 0.00 0.00 3.34
58 59 9.218440 CAAAAACTTATAGAAACAATGGCCAAT 57.782 29.630 10.96 0.00 0.00 3.16
59 60 7.659390 CCAAAAACTTATAGAAACAATGGCCAA 59.341 33.333 10.96 0.00 0.00 4.52
60 61 7.158021 CCAAAAACTTATAGAAACAATGGCCA 58.842 34.615 8.56 8.56 0.00 5.36
61 62 6.593770 CCCAAAAACTTATAGAAACAATGGCC 59.406 38.462 0.00 0.00 0.00 5.36
62 63 7.158697 ACCCAAAAACTTATAGAAACAATGGC 58.841 34.615 0.00 0.00 0.00 4.40
63 64 9.554395 AAACCCAAAAACTTATAGAAACAATGG 57.446 29.630 0.00 0.00 0.00 3.16
76 77 9.988815 AAAGCAAATTTTTAAACCCAAAAACTT 57.011 22.222 0.00 0.00 39.49 2.66
77 78 9.416794 CAAAGCAAATTTTTAAACCCAAAAACT 57.583 25.926 0.00 0.00 39.49 2.66
78 79 9.197694 ACAAAGCAAATTTTTAAACCCAAAAAC 57.802 25.926 0.00 0.00 39.49 2.43
79 80 9.764363 AACAAAGCAAATTTTTAAACCCAAAAA 57.236 22.222 0.00 0.00 40.58 1.94
80 81 9.196552 CAACAAAGCAAATTTTTAAACCCAAAA 57.803 25.926 0.00 0.00 0.00 2.44
81 82 8.576442 TCAACAAAGCAAATTTTTAAACCCAAA 58.424 25.926 0.00 0.00 0.00 3.28
82 83 8.110860 TCAACAAAGCAAATTTTTAAACCCAA 57.889 26.923 0.00 0.00 0.00 4.12
83 84 7.607991 TCTCAACAAAGCAAATTTTTAAACCCA 59.392 29.630 0.00 0.00 0.00 4.51
84 85 7.908082 GTCTCAACAAAGCAAATTTTTAAACCC 59.092 33.333 0.00 0.00 0.00 4.11
85 86 7.634432 CGTCTCAACAAAGCAAATTTTTAAACC 59.366 33.333 0.00 0.00 0.00 3.27
86 87 7.634432 CCGTCTCAACAAAGCAAATTTTTAAAC 59.366 33.333 0.00 0.00 0.00 2.01
87 88 7.545965 TCCGTCTCAACAAAGCAAATTTTTAAA 59.454 29.630 0.00 0.00 0.00 1.52
88 89 7.036220 TCCGTCTCAACAAAGCAAATTTTTAA 58.964 30.769 0.00 0.00 0.00 1.52
89 90 6.565234 TCCGTCTCAACAAAGCAAATTTTTA 58.435 32.000 0.00 0.00 0.00 1.52
90 91 5.415221 TCCGTCTCAACAAAGCAAATTTTT 58.585 33.333 0.00 0.00 0.00 1.94
91 92 5.004922 TCCGTCTCAACAAAGCAAATTTT 57.995 34.783 0.00 0.00 0.00 1.82
92 93 4.338118 TCTCCGTCTCAACAAAGCAAATTT 59.662 37.500 0.00 0.00 0.00 1.82
93 94 3.882888 TCTCCGTCTCAACAAAGCAAATT 59.117 39.130 0.00 0.00 0.00 1.82
94 95 3.476552 TCTCCGTCTCAACAAAGCAAAT 58.523 40.909 0.00 0.00 0.00 2.32
95 96 2.872245 CTCTCCGTCTCAACAAAGCAAA 59.128 45.455 0.00 0.00 0.00 3.68
96 97 2.102420 TCTCTCCGTCTCAACAAAGCAA 59.898 45.455 0.00 0.00 0.00 3.91
97 98 1.686587 TCTCTCCGTCTCAACAAAGCA 59.313 47.619 0.00 0.00 0.00 3.91
98 99 2.062519 GTCTCTCCGTCTCAACAAAGC 58.937 52.381 0.00 0.00 0.00 3.51
99 100 3.371102 TGTCTCTCCGTCTCAACAAAG 57.629 47.619 0.00 0.00 0.00 2.77
100 101 3.454375 GTTGTCTCTCCGTCTCAACAAA 58.546 45.455 0.00 0.00 38.41 2.83
101 102 2.543031 CGTTGTCTCTCCGTCTCAACAA 60.543 50.000 0.00 0.00 38.44 2.83
102 103 1.001706 CGTTGTCTCTCCGTCTCAACA 60.002 52.381 0.00 0.00 38.44 3.33
103 104 1.266175 TCGTTGTCTCTCCGTCTCAAC 59.734 52.381 0.00 0.00 36.20 3.18
104 105 1.535896 CTCGTTGTCTCTCCGTCTCAA 59.464 52.381 0.00 0.00 0.00 3.02
105 106 1.157585 CTCGTTGTCTCTCCGTCTCA 58.842 55.000 0.00 0.00 0.00 3.27
106 107 0.448593 CCTCGTTGTCTCTCCGTCTC 59.551 60.000 0.00 0.00 0.00 3.36
107 108 0.036448 TCCTCGTTGTCTCTCCGTCT 59.964 55.000 0.00 0.00 0.00 4.18
108 109 1.096416 ATCCTCGTTGTCTCTCCGTC 58.904 55.000 0.00 0.00 0.00 4.79
109 110 1.202582 CAATCCTCGTTGTCTCTCCGT 59.797 52.381 0.00 0.00 0.00 4.69
110 111 1.914634 CAATCCTCGTTGTCTCTCCG 58.085 55.000 0.00 0.00 0.00 4.63
111 112 1.205893 AGCAATCCTCGTTGTCTCTCC 59.794 52.381 0.00 0.00 0.00 3.71
112 113 2.094494 TGAGCAATCCTCGTTGTCTCTC 60.094 50.000 0.00 0.00 43.82 3.20
113 114 1.895798 TGAGCAATCCTCGTTGTCTCT 59.104 47.619 0.00 0.00 43.82 3.10
114 115 1.996191 GTGAGCAATCCTCGTTGTCTC 59.004 52.381 0.00 0.00 43.82 3.36
115 116 1.670087 CGTGAGCAATCCTCGTTGTCT 60.670 52.381 0.00 0.00 43.82 3.41
116 117 0.716108 CGTGAGCAATCCTCGTTGTC 59.284 55.000 0.00 0.00 43.82 3.18
117 118 0.317160 TCGTGAGCAATCCTCGTTGT 59.683 50.000 0.00 0.00 43.82 3.32
118 119 0.716108 GTCGTGAGCAATCCTCGTTG 59.284 55.000 0.00 0.00 43.82 4.10
119 120 0.732880 CGTCGTGAGCAATCCTCGTT 60.733 55.000 0.00 0.00 43.82 3.85
120 121 1.154016 CGTCGTGAGCAATCCTCGT 60.154 57.895 0.00 0.00 43.82 4.18
121 122 2.508891 GCGTCGTGAGCAATCCTCG 61.509 63.158 0.00 0.00 43.82 4.63
122 123 2.508891 CGCGTCGTGAGCAATCCTC 61.509 63.158 0.00 0.00 41.15 3.71
123 124 2.507102 CGCGTCGTGAGCAATCCT 60.507 61.111 0.00 0.00 34.19 3.24
124 125 4.210304 GCGCGTCGTGAGCAATCC 62.210 66.667 10.58 0.00 43.66 3.01
125 126 4.210304 GGCGCGTCGTGAGCAATC 62.210 66.667 10.58 0.00 46.35 2.67
130 131 4.829518 TCGATGGCGCGTCGTGAG 62.830 66.667 25.94 4.12 42.61 3.51
131 132 4.187810 ATCGATGGCGCGTCGTGA 62.188 61.111 25.94 8.93 42.61 4.35
132 133 3.976375 CATCGATGGCGCGTCGTG 61.976 66.667 25.94 20.30 42.61 4.35
133 134 2.954020 ATTCATCGATGGCGCGTCGT 62.954 55.000 24.61 4.41 42.61 4.34
134 135 2.302952 ATTCATCGATGGCGCGTCG 61.303 57.895 24.61 22.77 43.28 5.12
135 136 1.202568 CATTCATCGATGGCGCGTC 59.797 57.895 24.61 2.29 37.46 5.19
136 137 0.249280 TACATTCATCGATGGCGCGT 60.249 50.000 24.61 17.69 37.46 6.01
137 138 0.436150 CTACATTCATCGATGGCGCG 59.564 55.000 24.61 13.24 37.46 6.86
138 139 0.792640 CCTACATTCATCGATGGCGC 59.207 55.000 24.61 0.00 37.46 6.53
139 140 2.029918 TCTCCTACATTCATCGATGGCG 60.030 50.000 24.61 15.22 39.35 5.69
140 141 3.667497 TCTCCTACATTCATCGATGGC 57.333 47.619 24.61 0.00 0.00 4.40
141 142 8.090831 TCTTATTTCTCCTACATTCATCGATGG 58.909 37.037 24.61 11.69 0.00 3.51
142 143 8.920665 GTCTTATTTCTCCTACATTCATCGATG 58.079 37.037 19.61 19.61 0.00 3.84
143 144 8.865090 AGTCTTATTTCTCCTACATTCATCGAT 58.135 33.333 0.00 0.00 0.00 3.59
144 145 8.239038 AGTCTTATTTCTCCTACATTCATCGA 57.761 34.615 0.00 0.00 0.00 3.59
145 146 8.879342 AAGTCTTATTTCTCCTACATTCATCG 57.121 34.615 0.00 0.00 0.00 3.84
147 148 9.401058 CCAAAGTCTTATTTCTCCTACATTCAT 57.599 33.333 0.00 0.00 0.00 2.57
148 149 8.383175 ACCAAAGTCTTATTTCTCCTACATTCA 58.617 33.333 0.00 0.00 0.00 2.57
149 150 8.669243 CACCAAAGTCTTATTTCTCCTACATTC 58.331 37.037 0.00 0.00 0.00 2.67
150 151 7.611855 CCACCAAAGTCTTATTTCTCCTACATT 59.388 37.037 0.00 0.00 0.00 2.71
151 152 7.112779 CCACCAAAGTCTTATTTCTCCTACAT 58.887 38.462 0.00 0.00 0.00 2.29
152 153 6.472887 CCACCAAAGTCTTATTTCTCCTACA 58.527 40.000 0.00 0.00 0.00 2.74
153 154 5.354513 GCCACCAAAGTCTTATTTCTCCTAC 59.645 44.000 0.00 0.00 0.00 3.18
154 155 5.013704 TGCCACCAAAGTCTTATTTCTCCTA 59.986 40.000 0.00 0.00 0.00 2.94
155 156 4.202567 TGCCACCAAAGTCTTATTTCTCCT 60.203 41.667 0.00 0.00 0.00 3.69
156 157 4.079253 TGCCACCAAAGTCTTATTTCTCC 58.921 43.478 0.00 0.00 0.00 3.71
157 158 5.904362 ATGCCACCAAAGTCTTATTTCTC 57.096 39.130 0.00 0.00 0.00 2.87
158 159 6.670695 AAATGCCACCAAAGTCTTATTTCT 57.329 33.333 0.00 0.00 0.00 2.52
159 160 6.928492 TGAAAATGCCACCAAAGTCTTATTTC 59.072 34.615 0.00 0.00 0.00 2.17
160 161 6.825610 TGAAAATGCCACCAAAGTCTTATTT 58.174 32.000 0.00 0.00 0.00 1.40
161 162 6.418057 TGAAAATGCCACCAAAGTCTTATT 57.582 33.333 0.00 0.00 0.00 1.40
162 163 6.400568 CATGAAAATGCCACCAAAGTCTTAT 58.599 36.000 0.00 0.00 0.00 1.73
163 164 5.279406 CCATGAAAATGCCACCAAAGTCTTA 60.279 40.000 0.00 0.00 0.00 2.10
164 165 4.503643 CCATGAAAATGCCACCAAAGTCTT 60.504 41.667 0.00 0.00 0.00 3.01
165 166 3.007182 CCATGAAAATGCCACCAAAGTCT 59.993 43.478 0.00 0.00 0.00 3.24
166 167 3.328505 CCATGAAAATGCCACCAAAGTC 58.671 45.455 0.00 0.00 0.00 3.01
167 168 2.550639 GCCATGAAAATGCCACCAAAGT 60.551 45.455 0.00 0.00 0.00 2.66
168 169 2.078392 GCCATGAAAATGCCACCAAAG 58.922 47.619 0.00 0.00 0.00 2.77
169 170 1.419012 TGCCATGAAAATGCCACCAAA 59.581 42.857 0.00 0.00 0.00 3.28
170 171 1.054231 TGCCATGAAAATGCCACCAA 58.946 45.000 0.00 0.00 0.00 3.67
171 172 1.054231 TTGCCATGAAAATGCCACCA 58.946 45.000 0.00 0.00 0.00 4.17
172 173 2.406596 ATTGCCATGAAAATGCCACC 57.593 45.000 0.00 0.00 0.00 4.61
173 174 7.733402 ATATAAATTGCCATGAAAATGCCAC 57.267 32.000 0.00 0.00 0.00 5.01
174 175 7.991460 TCAATATAAATTGCCATGAAAATGCCA 59.009 29.630 0.00 0.00 41.96 4.92
175 176 8.284693 GTCAATATAAATTGCCATGAAAATGCC 58.715 33.333 0.00 0.00 41.96 4.40
176 177 8.005466 CGTCAATATAAATTGCCATGAAAATGC 58.995 33.333 0.00 0.00 41.96 3.56
177 178 9.033481 ACGTCAATATAAATTGCCATGAAAATG 57.967 29.630 0.00 0.00 41.96 2.32
178 179 9.033481 CACGTCAATATAAATTGCCATGAAAAT 57.967 29.630 0.00 0.00 41.96 1.82
211 212 9.325198 GTTGTCCTTCTTCCAAAATAAATTTGT 57.675 29.630 0.00 0.00 45.72 2.83
233 235 8.793592 GGTCTGTTTAATTTGATAGGAAGTTGT 58.206 33.333 0.00 0.00 0.00 3.32
237 239 7.011482 CCTCGGTCTGTTTAATTTGATAGGAAG 59.989 40.741 0.00 0.00 0.00 3.46
243 245 4.331968 TGCCTCGGTCTGTTTAATTTGAT 58.668 39.130 0.00 0.00 0.00 2.57
244 246 3.745799 TGCCTCGGTCTGTTTAATTTGA 58.254 40.909 0.00 0.00 0.00 2.69
250 255 4.456566 GGTAAATTTGCCTCGGTCTGTTTA 59.543 41.667 17.21 0.00 0.00 2.01
253 258 2.224670 TGGTAAATTTGCCTCGGTCTGT 60.225 45.455 23.54 0.00 33.70 3.41
256 261 4.196971 AGTATGGTAAATTTGCCTCGGTC 58.803 43.478 23.54 11.07 33.70 4.79
276 281 7.553044 GGATGTCAAATTTAGTTAGCCAGTAGT 59.447 37.037 0.00 0.00 0.00 2.73
279 284 6.485171 AGGATGTCAAATTTAGTTAGCCAGT 58.515 36.000 0.00 0.00 0.00 4.00
280 285 6.599244 TGAGGATGTCAAATTTAGTTAGCCAG 59.401 38.462 0.00 0.00 29.64 4.85
281 286 6.480763 TGAGGATGTCAAATTTAGTTAGCCA 58.519 36.000 0.00 0.00 29.64 4.75
282 287 6.458888 GCTGAGGATGTCAAATTTAGTTAGCC 60.459 42.308 0.00 0.00 33.60 3.93
283 288 6.094048 TGCTGAGGATGTCAAATTTAGTTAGC 59.906 38.462 0.00 0.00 33.60 3.09
284 289 7.615582 TGCTGAGGATGTCAAATTTAGTTAG 57.384 36.000 0.00 0.00 33.60 2.34
285 290 7.994425 TTGCTGAGGATGTCAAATTTAGTTA 57.006 32.000 0.00 0.00 33.60 2.24
293 298 6.839124 ATTATGTTTGCTGAGGATGTCAAA 57.161 33.333 0.00 0.00 33.60 2.69
321 326 4.264460 TGGCAAATCCAACGCTTTTATT 57.736 36.364 0.00 0.00 43.21 1.40
335 341 3.575256 TCAGACTTTCAAGCATGGCAAAT 59.425 39.130 0.00 0.00 0.00 2.32
344 350 2.032178 AGCAAACGTCAGACTTTCAAGC 59.968 45.455 0.00 1.95 0.00 4.01
347 353 1.939934 CCAGCAAACGTCAGACTTTCA 59.060 47.619 0.00 0.00 0.00 2.69
348 354 2.210116 TCCAGCAAACGTCAGACTTTC 58.790 47.619 0.00 0.00 0.00 2.62
388 394 6.039047 CAGAAGTAACATGGATTTGGATGAGG 59.961 42.308 0.00 0.00 0.00 3.86
390 396 6.484288 ACAGAAGTAACATGGATTTGGATGA 58.516 36.000 0.00 0.00 0.00 2.92
392 398 7.067494 GCTAACAGAAGTAACATGGATTTGGAT 59.933 37.037 0.00 0.00 0.00 3.41
393 399 6.374333 GCTAACAGAAGTAACATGGATTTGGA 59.626 38.462 0.00 0.00 0.00 3.53
394 400 6.150976 TGCTAACAGAAGTAACATGGATTTGG 59.849 38.462 0.00 0.00 0.00 3.28
395 401 7.023575 GTGCTAACAGAAGTAACATGGATTTG 58.976 38.462 0.00 0.00 0.00 2.32
396 402 6.942576 AGTGCTAACAGAAGTAACATGGATTT 59.057 34.615 0.00 0.00 0.00 2.17
397 403 6.476378 AGTGCTAACAGAAGTAACATGGATT 58.524 36.000 0.00 0.00 0.00 3.01
410 416 0.173481 CCGCTGCTAGTGCTAACAGA 59.827 55.000 12.29 0.00 40.48 3.41
412 418 1.179152 TACCGCTGCTAGTGCTAACA 58.821 50.000 0.00 0.00 40.48 2.41
438 472 6.508777 GTTTTTACACACTCTCTCTCACTCT 58.491 40.000 0.00 0.00 0.00 3.24
442 476 4.049186 GCGTTTTTACACACTCTCTCTCA 58.951 43.478 0.00 0.00 0.00 3.27
477 1692 1.949799 ATTCTCTCCTCCAGCACACT 58.050 50.000 0.00 0.00 0.00 3.55
485 1700 1.668867 GCCGGCTATTCTCTCCTCC 59.331 63.158 22.15 0.00 0.00 4.30
531 1774 0.988063 GGGGCCTCTTCACTTTCTCT 59.012 55.000 0.84 0.00 0.00 3.10
532 1775 0.693049 TGGGGCCTCTTCACTTTCTC 59.307 55.000 3.07 0.00 0.00 2.87
533 1776 0.402121 GTGGGGCCTCTTCACTTTCT 59.598 55.000 3.07 0.00 0.00 2.52
535 1778 1.460699 GGTGGGGCCTCTTCACTTT 59.539 57.895 3.07 0.00 0.00 2.66
539 1782 4.974438 ACCGGTGGGGCCTCTTCA 62.974 66.667 6.12 0.00 40.62 3.02
581 1833 5.874093 AGACAGCAATAGAATAATGGAGGG 58.126 41.667 0.00 0.00 0.00 4.30
582 1834 7.814264 AAAGACAGCAATAGAATAATGGAGG 57.186 36.000 0.00 0.00 0.00 4.30
603 1855 2.140717 ACGGTGAGAAGCGGTTAAAAG 58.859 47.619 0.00 0.00 0.00 2.27
610 1862 2.504244 GACGACGGTGAGAAGCGG 60.504 66.667 0.00 0.00 0.00 5.52
612 1864 2.504244 CGGACGACGGTGAGAAGC 60.504 66.667 0.00 0.00 39.42 3.86
680 1941 1.215655 GCCGAGCGCGTTAATCAGAT 61.216 55.000 8.43 0.00 35.23 2.90
760 2025 1.074850 GGGGAAGGAGGAGGAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
761 2026 2.647949 GGGGGAAGGAGGAGGAGGA 61.648 68.421 0.00 0.00 0.00 3.71
762 2027 2.040359 GGGGGAAGGAGGAGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
848 2114 4.162690 GGCTAGTGTGCTCCCGGG 62.163 72.222 16.85 16.85 0.00 5.73
856 2122 0.460987 GCTACCTGCTGGCTAGTGTG 60.461 60.000 9.95 0.00 38.95 3.82
872 2138 2.457598 CTCCAACTCCTGGTACTGCTA 58.542 52.381 0.00 0.00 46.51 3.49
875 2141 1.827969 CTCCTCCAACTCCTGGTACTG 59.172 57.143 0.00 0.00 46.51 2.74
937 2209 2.585247 GTCGATACGGCAGGTGGC 60.585 66.667 0.00 0.00 43.74 5.01
938 2210 2.278596 CGTCGATACGGCAGGTGG 60.279 66.667 0.00 0.00 45.50 4.61
1128 2431 1.140452 GTGGTAGTAAGCTAAGGGGGC 59.860 57.143 0.00 0.00 0.00 5.80
1143 2449 2.056223 GGCGGAGGTGCTAGTGGTA 61.056 63.158 0.00 0.00 34.52 3.25
1144 2450 3.391382 GGCGGAGGTGCTAGTGGT 61.391 66.667 0.00 0.00 34.52 4.16
1145 2451 4.162690 GGGCGGAGGTGCTAGTGG 62.163 72.222 0.00 0.00 34.52 4.00
1221 2527 3.100862 GAGGAGCAACGCGATTGGC 62.101 63.158 15.93 10.68 38.88 4.52
1254 2564 9.796120 GTATGGCTTGATCTAGCTAAATAGTAG 57.204 37.037 24.93 0.00 40.99 2.57
1433 2785 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
1478 2830 4.918060 CACACACACACACGCGCG 62.918 66.667 30.96 30.96 0.00 6.86
1479 2831 3.860125 ACACACACACACACGCGC 61.860 61.111 5.73 0.00 0.00 6.86
1480 2832 2.021243 CACACACACACACACGCG 59.979 61.111 3.53 3.53 0.00 6.01
1481 2833 2.277247 GCACACACACACACACGC 60.277 61.111 0.00 0.00 0.00 5.34
1482 2834 2.021243 CGCACACACACACACACG 59.979 61.111 0.00 0.00 0.00 4.49
1483 2835 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
1484 2836 3.858989 CGCGCACACACACACACA 61.859 61.111 8.75 0.00 0.00 3.72
1485 2837 3.860125 ACGCGCACACACACACAC 61.860 61.111 5.73 0.00 0.00 3.82
1486 2838 3.858989 CACGCGCACACACACACA 61.859 61.111 5.73 0.00 0.00 3.72
1499 2851 3.855209 AAATGTCACACGCGCACGC 62.855 57.895 5.73 4.64 45.53 5.34
1501 2853 1.725625 CCAAATGTCACACGCGCAC 60.726 57.895 5.73 0.00 0.00 5.34
1502 2854 1.440145 TTCCAAATGTCACACGCGCA 61.440 50.000 5.73 0.00 0.00 6.09
1503 2855 0.109781 ATTCCAAATGTCACACGCGC 60.110 50.000 5.73 0.00 0.00 6.86
1504 2856 1.978097 CAATTCCAAATGTCACACGCG 59.022 47.619 3.53 3.53 0.00 6.01
1505 2857 2.030363 TCCAATTCCAAATGTCACACGC 60.030 45.455 0.00 0.00 0.00 5.34
1506 2858 3.564511 GTCCAATTCCAAATGTCACACG 58.435 45.455 0.00 0.00 0.00 4.49
1507 2859 3.320541 TGGTCCAATTCCAAATGTCACAC 59.679 43.478 0.00 0.00 31.50 3.82
1508 2860 3.320541 GTGGTCCAATTCCAAATGTCACA 59.679 43.478 0.00 0.00 36.68 3.58
1509 2861 3.306019 GGTGGTCCAATTCCAAATGTCAC 60.306 47.826 0.00 0.00 36.68 3.67
1510 2862 2.896685 GGTGGTCCAATTCCAAATGTCA 59.103 45.455 0.00 0.00 36.68 3.58
1511 2863 2.896685 TGGTGGTCCAATTCCAAATGTC 59.103 45.455 0.00 0.00 41.25 3.06
1558 2910 2.919494 GCCAGTGGAAAGTTGCCCG 61.919 63.158 15.20 0.00 0.00 6.13
1594 2949 8.161699 ACCGTGCTTTTTATTCTTCTAGAAAA 57.838 30.769 6.63 4.81 37.82 2.29
1596 2951 9.444600 AATACCGTGCTTTTTATTCTTCTAGAA 57.555 29.630 4.81 4.81 38.78 2.10
1597 2952 9.095065 GAATACCGTGCTTTTTATTCTTCTAGA 57.905 33.333 0.00 0.00 31.11 2.43
1607 2962 6.148811 CAGAAAGGAGAATACCGTGCTTTTTA 59.851 38.462 0.00 0.00 34.80 1.52
1613 2968 2.280628 CCAGAAAGGAGAATACCGTGC 58.719 52.381 0.00 0.00 41.22 5.34
1614 2969 3.611766 ACCAGAAAGGAGAATACCGTG 57.388 47.619 0.00 0.00 41.22 4.94
1615 2970 3.307480 CCAACCAGAAAGGAGAATACCGT 60.307 47.826 0.00 0.00 41.22 4.83
1616 2971 3.270877 CCAACCAGAAAGGAGAATACCG 58.729 50.000 0.00 0.00 41.22 4.02
1617 2972 4.010349 CACCAACCAGAAAGGAGAATACC 58.990 47.826 0.00 0.00 41.22 2.73
1678 3037 3.806521 CACCATGCTGCAGTAATCTACTC 59.193 47.826 16.64 0.00 36.76 2.59
1679 3038 3.198635 ACACCATGCTGCAGTAATCTACT 59.801 43.478 16.64 0.00 40.28 2.57
1680 3039 3.535561 ACACCATGCTGCAGTAATCTAC 58.464 45.455 16.64 0.00 0.00 2.59
1681 3040 3.912496 ACACCATGCTGCAGTAATCTA 57.088 42.857 16.64 0.00 0.00 1.98
1682 3041 2.795231 ACACCATGCTGCAGTAATCT 57.205 45.000 16.64 0.00 0.00 2.40
1683 3042 2.098117 GGAACACCATGCTGCAGTAATC 59.902 50.000 16.64 0.00 0.00 1.75
1712 3071 0.326927 CTTCCGGAAACCTGCCCTTA 59.673 55.000 19.39 0.00 0.00 2.69
1726 3085 1.200020 GGTTCACTGGCATTTCTTCCG 59.800 52.381 0.00 0.00 0.00 4.30
1759 3118 6.980978 TGAATGCTGTTTCCGACAAAAATAAA 59.019 30.769 0.00 0.00 37.93 1.40
1771 3130 4.574599 ACTGAAGTTGAATGCTGTTTCC 57.425 40.909 0.00 0.00 0.00 3.13
1776 3135 5.179045 ACTGAAACTGAAGTTGAATGCTG 57.821 39.130 0.00 0.00 38.44 4.41
1786 3145 3.937706 CCCTGAGCATACTGAAACTGAAG 59.062 47.826 0.00 0.00 0.00 3.02
1787 3146 3.327757 ACCCTGAGCATACTGAAACTGAA 59.672 43.478 0.00 0.00 0.00 3.02
1788 3147 2.906389 ACCCTGAGCATACTGAAACTGA 59.094 45.455 0.00 0.00 0.00 3.41
1789 3148 3.005554 CACCCTGAGCATACTGAAACTG 58.994 50.000 0.00 0.00 0.00 3.16
1790 3149 2.616510 GCACCCTGAGCATACTGAAACT 60.617 50.000 0.00 0.00 0.00 2.66
1791 3150 1.740025 GCACCCTGAGCATACTGAAAC 59.260 52.381 0.00 0.00 0.00 2.78
1826 3270 1.804326 CACCTAGCGCGTGTACCAC 60.804 63.158 8.43 0.00 0.00 4.16
1834 3278 2.805845 ACAGTAAATACACCTAGCGCG 58.194 47.619 0.00 0.00 0.00 6.86
1835 3279 5.541098 AAAACAGTAAATACACCTAGCGC 57.459 39.130 0.00 0.00 0.00 5.92
1861 3305 2.869801 AGTCAGATCGATCAGAGTCGTC 59.130 50.000 26.47 11.83 42.07 4.20
1936 3380 0.036199 TGGTTTTCCCGGTATCCACG 60.036 55.000 0.00 0.00 39.73 4.94
2059 3503 5.255687 ACAATCTTGTATTGGCACTCATCA 58.744 37.500 0.00 0.00 40.16 3.07
2102 3546 4.818546 ACACGGTAGTACGCTATGAATACT 59.181 41.667 0.00 0.00 37.37 2.12
2121 3565 3.802948 AAGGTGGCTAGATAGAACACG 57.197 47.619 0.00 0.00 35.17 4.49
2158 3606 7.018049 TCCACAAATATCCATACATCCATACCA 59.982 37.037 0.00 0.00 0.00 3.25
2160 3608 8.103305 AGTCCACAAATATCCATACATCCATAC 58.897 37.037 0.00 0.00 0.00 2.39
2198 3647 3.896888 ACAAGGGATTGAATTGTTCAGCA 59.103 39.130 0.00 0.00 41.38 4.41
2217 3666 5.183713 CAGTTCTTATTGATCCCTGCAACAA 59.816 40.000 0.00 0.00 0.00 2.83
2333 3782 2.956333 ACTTACCTGCAAAACTGTTCCC 59.044 45.455 0.00 0.00 0.00 3.97
2354 3803 0.179078 AAACGGTTGCACGGTACTCA 60.179 50.000 1.59 0.00 38.39 3.41
2359 3808 1.033202 AAAGGAAACGGTTGCACGGT 61.033 50.000 7.67 0.00 38.39 4.83
2362 3811 5.103687 TCTTTAAAAAGGAAACGGTTGCAC 58.896 37.500 7.67 0.00 36.67 4.57
2409 3858 4.142038 ACACCATTTTCAGGTTACAGGAC 58.858 43.478 0.00 0.00 37.23 3.85
2431 3880 9.832445 ATAAAAACTAAGAGTTGAGTGAGTTGA 57.168 29.630 0.00 0.00 38.66 3.18
2464 3913 8.407832 CAATGTCACCATAAGCAGAATAAATGA 58.592 33.333 0.00 0.00 0.00 2.57
2570 4019 9.355916 GCTATAAATGGGAAATAAGGAAAGAGT 57.644 33.333 0.00 0.00 0.00 3.24
2577 4026 8.526147 CATTGGAGCTATAAATGGGAAATAAGG 58.474 37.037 7.34 0.00 0.00 2.69
2579 4028 8.859090 CACATTGGAGCTATAAATGGGAAATAA 58.141 33.333 15.90 0.00 36.94 1.40
2674 4123 9.726438 ATGCCAAGGTTATAATAGAGTATCAAC 57.274 33.333 0.00 0.00 37.82 3.18
2902 4351 6.765915 AAAAATGAACTTAGGATGGAGAGC 57.234 37.500 0.00 0.00 0.00 4.09
3195 4647 5.009410 ACAGCATGGAAAAGAGAAGAACTTG 59.991 40.000 0.00 0.00 43.62 3.16
3197 4649 4.723309 ACAGCATGGAAAAGAGAAGAACT 58.277 39.130 0.00 0.00 43.62 3.01
3312 4801 5.583854 TGCTATTAGCTGCAGAAAAGAGAAG 59.416 40.000 20.43 4.72 42.97 2.85
3366 4856 8.081208 ACTTAAGACATAATGCGATGATCAAG 57.919 34.615 10.09 0.00 0.00 3.02
3435 4925 1.531423 CCACAGCTTGATGCAAGACT 58.469 50.000 11.08 5.13 43.42 3.24
3591 5090 2.283529 GCTCCGGTGAGACCCTGAA 61.284 63.158 7.92 0.00 41.42 3.02
3788 5287 1.737838 TGGAGTATTTCCTTGCAGCG 58.262 50.000 0.00 0.00 46.92 5.18
3840 5339 4.387026 AGATGAATCAGTTGTCCCCAAA 57.613 40.909 0.00 0.00 30.94 3.28
3978 5477 5.469421 AGTCTGTTGCTTTGATTTCTCAGAG 59.531 40.000 0.00 0.00 36.83 3.35
4047 5546 9.897744 TTCAATTCTTCAATTTCATGTCTGTAC 57.102 29.630 0.00 0.00 28.97 2.90
4053 5552 9.635520 GATGACTTCAATTCTTCAATTTCATGT 57.364 29.630 0.00 0.00 30.71 3.21
4056 5555 7.804600 CGTGATGACTTCAATTCTTCAATTTCA 59.195 33.333 0.00 0.00 35.70 2.69
4131 5630 7.446769 GTTTGGGGGTTACAGATTTTATTTGT 58.553 34.615 0.00 0.00 0.00 2.83
4209 5708 7.951530 CTGTAAGGTTGCATTTGATTCTTTT 57.048 32.000 0.00 0.00 0.00 2.27
4630 6129 2.845345 CCTGCCCTTTCCCCACACT 61.845 63.158 0.00 0.00 0.00 3.55
4638 6137 1.339151 ACACGAGAATCCTGCCCTTTC 60.339 52.381 0.00 0.00 0.00 2.62
4708 6207 9.157104 CTTATTTCTAAGTTCCTCTTCCAGTTC 57.843 37.037 0.00 0.00 37.56 3.01
4729 6228 4.261741 GCCGTCATGCATCATTTCCTTATT 60.262 41.667 0.00 0.00 0.00 1.40
5190 6689 3.721035 AGAAAGCACCAAAATGTCTTGC 58.279 40.909 0.00 0.00 0.00 4.01
5334 6833 3.244009 CCAGTCCAGATATGCGTTCTGAT 60.244 47.826 15.46 3.68 42.63 2.90
5514 7013 2.223479 TGCTTCCGACAGTTTTCTTTGC 60.223 45.455 0.00 0.00 0.00 3.68
5645 7144 2.232941 CCATGCAATTCCAACTTCTGCT 59.767 45.455 0.00 0.00 34.10 4.24
5736 7235 4.357918 AAGCTTTGCTTCTAGGAACTCA 57.642 40.909 0.00 0.00 46.77 3.41
6316 7815 7.340743 TGTTATTTTCTGGACCTGAAGTTTCAA 59.659 33.333 12.93 5.92 36.64 2.69
6742 8241 6.027131 TCAATGCGGTGATTTTCTTTAATCG 58.973 36.000 0.00 0.00 37.34 3.34
6750 8252 3.859386 GGAACATCAATGCGGTGATTTTC 59.141 43.478 15.11 15.11 41.14 2.29
6784 8286 2.181975 ACAAGGAAATGCAAGGGGATG 58.818 47.619 0.00 0.00 0.00 3.51
6842 8344 9.301897 AGCTTAGTTTCCAGTATTTGAATCTTT 57.698 29.630 0.00 0.00 0.00 2.52
6892 8394 0.034337 TTGTTGAGCCCTGTACGTCC 59.966 55.000 0.00 0.00 0.00 4.79
6895 8397 2.480419 CTCTTTTGTTGAGCCCTGTACG 59.520 50.000 0.00 0.00 0.00 3.67
7036 8538 0.853530 AGAACTTTTGGGAGGGCTGT 59.146 50.000 0.00 0.00 0.00 4.40
7175 8678 6.528321 AGAGCTAAGAATATACTGCAATGCA 58.472 36.000 7.99 7.99 36.92 3.96
7178 8681 9.487790 GAGAAAGAGCTAAGAATATACTGCAAT 57.512 33.333 0.00 0.00 0.00 3.56
7191 8694 8.413229 AGCAGTTAAGATAGAGAAAGAGCTAAG 58.587 37.037 0.00 0.00 0.00 2.18
7246 8749 9.416284 TGATGTGTATAAAGTCATACCTAGTCA 57.584 33.333 0.00 0.00 31.52 3.41
7247 8750 9.680315 GTGATGTGTATAAAGTCATACCTAGTC 57.320 37.037 0.00 0.00 31.52 2.59
7259 8762 7.043961 TCTCCAGCTAGTGATGTGTATAAAG 57.956 40.000 0.00 0.00 0.00 1.85
7371 8874 8.728833 GCCAATAAAATGAAATGATTTTCCACA 58.271 29.630 0.00 0.00 40.49 4.17
7399 8902 3.967326 CCTACAGTATGGACAATCCCTCA 59.033 47.826 0.00 0.00 43.62 3.86
7421 8924 4.607293 TGTGTCCTCTGCCATCATATAC 57.393 45.455 0.00 0.00 0.00 1.47
7437 8940 6.749923 AAAAGATTTGCTAGGAGATGTGTC 57.250 37.500 0.00 0.00 0.00 3.67
7691 9198 1.903877 GCTGGGCCTCTACTTCTGCA 61.904 60.000 4.53 0.00 0.00 4.41
7715 9222 4.471904 TTTCAGCTCCATCACTAATCGT 57.528 40.909 0.00 0.00 0.00 3.73
7780 9287 5.480073 AGTCTTATGTTTATGGCAGGCAAAA 59.520 36.000 0.00 0.56 0.00 2.44
7781 9288 5.016173 AGTCTTATGTTTATGGCAGGCAAA 58.984 37.500 0.00 0.00 0.00 3.68
7957 9464 7.158021 CAGAAGGCTTTAGACTATCCATAAGG 58.842 42.308 0.00 0.00 29.55 2.69
8035 9542 5.273674 TCATGAGAATCTGACATCAGTCC 57.726 43.478 8.70 0.47 44.33 3.85
8036 9543 6.201234 CACATCATGAGAATCTGACATCAGTC 59.799 42.308 8.70 0.63 44.12 3.51
8051 9576 7.597864 GCATTTGCTTGTTCTCACATCATGAG 61.598 42.308 0.09 0.00 46.11 2.90
8097 9622 1.891150 CCGGTACCAACTAGTGAGTGT 59.109 52.381 13.54 0.00 35.52 3.55
8177 9709 4.337555 CACAATATTTGCCTCTTCAGGGAG 59.662 45.833 0.00 0.00 42.06 4.30
8273 9807 4.098349 AGAAACACATGGCATCGCATAATT 59.902 37.500 0.00 0.00 0.00 1.40
8280 9814 3.488047 GGATGAAGAAACACATGGCATCG 60.488 47.826 0.00 0.00 33.37 3.84
8311 9845 2.234908 CCTCCCGATGAACTGAGAAACT 59.765 50.000 0.00 0.00 0.00 2.66
8323 9857 0.533491 TAACGTTCACCCTCCCGATG 59.467 55.000 2.82 0.00 0.00 3.84
8325 9859 1.269012 AATAACGTTCACCCTCCCGA 58.731 50.000 2.82 0.00 0.00 5.14
8555 10089 5.760193 TTTTCCGATTTGCGATGAAAATG 57.240 34.783 0.00 0.00 44.57 2.32
8636 10170 4.586841 AGCAGTAGTAATCCTCCAGATCAC 59.413 45.833 0.00 0.00 32.47 3.06
8688 10222 3.866066 GCTGACACCTGATGCTTGTCTTA 60.866 47.826 2.90 0.00 40.34 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.