Multiple sequence alignment - TraesCS5A01G529300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G529300 chr5A 100.000 3186 0 0 1 3186 688833087 688829902 0.000000e+00 5884.0
1 TraesCS5A01G529300 chr5A 88.943 823 72 11 2227 3039 688824353 688823540 0.000000e+00 998.0
2 TraesCS5A01G529300 chr5A 85.657 502 48 7 904 1405 688841249 688840772 1.020000e-139 507.0
3 TraesCS5A01G529300 chr5A 85.167 209 24 7 2552 2757 688824354 688824150 1.160000e-49 207.0
4 TraesCS5A01G529300 chr5A 82.857 105 10 2 466 564 688841376 688841274 1.570000e-13 87.9
5 TraesCS5A01G529300 chr4D 88.228 1512 84 31 747 2192 504116195 504114712 0.000000e+00 1720.0
6 TraesCS5A01G529300 chr4D 90.777 618 44 8 3 614 504116982 504116372 0.000000e+00 813.0
7 TraesCS5A01G529300 chr4D 87.109 512 44 8 910 1405 504178399 504177894 7.720000e-156 560.0
8 TraesCS5A01G529300 chr4D 76.345 892 128 48 1645 2486 504177693 504176835 4.950000e-108 401.0
9 TraesCS5A01G529300 chr4D 88.218 331 20 7 2192 2517 504114680 504114364 8.340000e-101 377.0
10 TraesCS5A01G529300 chr4D 94.521 73 4 0 585 657 241139365 241139293 2.600000e-21 113.0
11 TraesCS5A01G529300 chr4D 93.151 73 5 0 585 657 483700236 483700308 1.210000e-19 108.0
12 TraesCS5A01G529300 chr4B 88.219 1477 101 36 749 2192 650702606 650701170 0.000000e+00 1696.0
13 TraesCS5A01G529300 chr4B 90.132 760 56 10 3 749 650703398 650702645 0.000000e+00 970.0
14 TraesCS5A01G529300 chr4B 79.965 1133 132 53 910 2001 650707066 650705988 0.000000e+00 747.0
15 TraesCS5A01G529300 chr4B 86.076 316 34 5 2448 2757 650700354 650700043 6.590000e-87 331.0
16 TraesCS5A01G529300 chr4B 85.638 188 24 3 2228 2412 650701067 650700880 9.020000e-46 195.0
17 TraesCS5A01G529300 chr4B 83.333 138 22 1 2276 2412 650700495 650700358 3.340000e-25 126.0
18 TraesCS5A01G529300 chr4B 95.312 64 1 2 1988 2049 650705981 650705918 2.020000e-17 100.0
19 TraesCS5A01G529300 chr3B 78.010 955 138 46 1072 1982 72478138 72477212 4.680000e-148 534.0
20 TraesCS5A01G529300 chr3B 83.794 253 39 2 2788 3039 370940995 370940744 4.110000e-59 239.0
21 TraesCS5A01G529300 chr3A 78.176 921 128 48 1072 1957 57886850 57885968 1.310000e-143 520.0
22 TraesCS5A01G529300 chr3A 87.069 232 30 0 2794 3025 730924274 730924505 2.440000e-66 263.0
23 TraesCS5A01G529300 chr3D 77.603 951 133 45 1072 1971 46471865 46470944 1.320000e-138 503.0
24 TraesCS5A01G529300 chr2D 85.965 285 34 4 2753 3036 485595473 485595752 1.860000e-77 300.0
25 TraesCS5A01G529300 chr2D 85.614 285 35 4 2753 3036 485638678 485638957 8.640000e-76 294.0
26 TraesCS5A01G529300 chr2D 83.624 287 45 2 2754 3039 69498774 69499059 5.240000e-68 268.0
27 TraesCS5A01G529300 chr2B 85.765 281 36 4 2760 3039 387147538 387147815 8.640000e-76 294.0
28 TraesCS5A01G529300 chr5B 83.082 331 47 8 1072 1395 212786360 212786032 3.110000e-75 292.0
29 TraesCS5A01G529300 chr5D 87.719 228 22 5 2800 3024 547973875 547973651 8.770000e-66 261.0
30 TraesCS5A01G529300 chr5D 93.151 73 5 0 585 657 79869139 79869211 1.210000e-19 108.0
31 TraesCS5A01G529300 chr7D 83.398 259 38 5 2784 3039 32922882 32922626 5.310000e-58 235.0
32 TraesCS5A01G529300 chrUn 93.151 73 5 0 585 657 159843296 159843368 1.210000e-19 108.0
33 TraesCS5A01G529300 chrUn 93.151 73 5 0 585 657 189388981 189389053 1.210000e-19 108.0
34 TraesCS5A01G529300 chr6A 93.151 73 5 0 585 657 84405944 84405872 1.210000e-19 108.0
35 TraesCS5A01G529300 chr6A 93.151 73 5 0 585 657 289125099 289125171 1.210000e-19 108.0
36 TraesCS5A01G529300 chr6A 93.151 73 5 0 585 657 608897513 608897441 1.210000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G529300 chr5A 688829902 688833087 3185 True 5884.00 5884 100.000000 1 3186 1 chr5A.!!$R1 3185
1 TraesCS5A01G529300 chr5A 688823540 688824354 814 True 602.50 998 87.055000 2227 3039 2 chr5A.!!$R2 812
2 TraesCS5A01G529300 chr5A 688840772 688841376 604 True 297.45 507 84.257000 466 1405 2 chr5A.!!$R3 939
3 TraesCS5A01G529300 chr4D 504114364 504116982 2618 True 970.00 1720 89.074333 3 2517 3 chr4D.!!$R2 2514
4 TraesCS5A01G529300 chr4D 504176835 504178399 1564 True 480.50 560 81.727000 910 2486 2 chr4D.!!$R3 1576
5 TraesCS5A01G529300 chr4B 650700043 650707066 7023 True 595.00 1696 86.953571 3 2757 7 chr4B.!!$R1 2754
6 TraesCS5A01G529300 chr3B 72477212 72478138 926 True 534.00 534 78.010000 1072 1982 1 chr3B.!!$R1 910
7 TraesCS5A01G529300 chr3A 57885968 57886850 882 True 520.00 520 78.176000 1072 1957 1 chr3A.!!$R1 885
8 TraesCS5A01G529300 chr3D 46470944 46471865 921 True 503.00 503 77.603000 1072 1971 1 chr3D.!!$R1 899

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 4139 0.767375 CCAGGATGTCCCCTACCATG 59.233 60.0 0.0 0.0 34.07 3.66 F
853 4644 1.083489 TAGCCGCATCCGTTTCTTTG 58.917 50.0 0.0 0.0 0.00 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1793 5704 1.056750 CCAATTTCGTCGTCGTCGC 59.943 57.895 7.01 0.0 38.33 5.19 R
2488 7074 1.166129 GGGCTTCCGTTTCTTCCTTC 58.834 55.000 0.00 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 3751 5.127194 TGTGTAGCCTTGACTTGGATAGTAG 59.873 44.000 0.00 0.00 37.17 2.57
85 3752 3.828875 AGCCTTGACTTGGATAGTAGC 57.171 47.619 0.00 0.00 37.17 3.58
86 3753 3.107601 AGCCTTGACTTGGATAGTAGCA 58.892 45.455 0.00 0.00 37.17 3.49
89 3756 3.873952 CCTTGACTTGGATAGTAGCAAGC 59.126 47.826 0.00 0.00 37.37 4.01
90 3757 4.507710 CTTGACTTGGATAGTAGCAAGCA 58.492 43.478 0.00 0.00 37.17 3.91
91 3758 4.760530 TGACTTGGATAGTAGCAAGCAT 57.239 40.909 0.00 0.00 37.17 3.79
323 4005 2.703007 GGATACCTCCTTGACATGCTCT 59.297 50.000 0.00 0.00 38.65 4.09
375 4057 1.000396 AGGTTGAAGCCTGATGCCC 60.000 57.895 0.00 0.00 42.71 5.36
385 4067 3.376935 CTGATGCCCGCGGTCTTCT 62.377 63.158 26.12 3.24 0.00 2.85
396 4078 1.937108 GCGGTCTTCTTGTCAGACAGG 60.937 57.143 6.33 6.33 42.28 4.00
429 4111 2.524440 TCTTCACCATATCCCTCCCTCT 59.476 50.000 0.00 0.00 0.00 3.69
457 4139 0.767375 CCAGGATGTCCCCTACCATG 59.233 60.000 0.00 0.00 34.07 3.66
546 4234 1.571919 CTCCCGCCTATTGTTTCTCG 58.428 55.000 0.00 0.00 0.00 4.04
572 4260 9.271828 GGCTAAAATCCATTTCTTTCTGAAAAA 57.728 29.630 4.18 0.00 46.32 1.94
616 4331 7.865385 TGAATGCAGTAACTATGTTTTCCAAAC 59.135 33.333 0.00 0.00 0.00 2.93
824 4598 7.485418 TTAAGACGATTTTACTGTTGCTCAA 57.515 32.000 0.00 0.00 0.00 3.02
853 4644 1.083489 TAGCCGCATCCGTTTCTTTG 58.917 50.000 0.00 0.00 0.00 2.77
862 4653 4.499019 GCATCCGTTTCTTTGTTTCTTCCA 60.499 41.667 0.00 0.00 0.00 3.53
954 4745 2.282887 CCCACCCTCCCAAAACCG 60.283 66.667 0.00 0.00 0.00 4.44
982 4773 3.622166 ACACACCTATAAAACCCTCCG 57.378 47.619 0.00 0.00 0.00 4.63
1003 4808 3.461773 CTCTCCGCCGTCCCACAT 61.462 66.667 0.00 0.00 0.00 3.21
1434 5273 2.670148 GGACTTCAGGCATCCCGGT 61.670 63.158 0.00 0.00 35.76 5.28
1984 5923 1.448013 GTCCTTCGTACTGCTGGCC 60.448 63.158 0.00 0.00 0.00 5.36
1993 5957 1.032657 TACTGCTGGCCGAGAGAGAC 61.033 60.000 0.00 0.00 0.00 3.36
1995 5959 1.881903 CTGCTGGCCGAGAGAGACAA 61.882 60.000 0.00 0.00 0.00 3.18
2043 6007 3.731216 GGATCATCGTTCGTGTCATACTG 59.269 47.826 0.00 0.00 0.00 2.74
2044 6008 4.497507 GGATCATCGTTCGTGTCATACTGA 60.498 45.833 0.00 0.00 0.00 3.41
2076 6055 7.333174 GTGCCTATAAGAGAGAAGAATAATGCC 59.667 40.741 0.00 0.00 0.00 4.40
2093 6073 0.391263 GCCGTACCTGAAACCTGGAG 60.391 60.000 0.00 0.00 0.00 3.86
2145 6130 2.283145 ATGCTGAGTGCTTTGTTCCT 57.717 45.000 0.00 0.00 43.37 3.36
2196 6214 7.428282 TTTTCAGAACATAAATGACTGCGTA 57.572 32.000 12.98 0.00 36.53 4.42
2217 6235 1.617947 GGGGGAGTGAGCGACTGATT 61.618 60.000 0.00 0.00 33.83 2.57
2295 6350 3.771577 AGATCAAAACTTCACGGACCT 57.228 42.857 0.00 0.00 0.00 3.85
2296 6351 3.665190 AGATCAAAACTTCACGGACCTC 58.335 45.455 0.00 0.00 0.00 3.85
2297 6352 1.860676 TCAAAACTTCACGGACCTCG 58.139 50.000 0.00 0.00 45.88 4.63
2298 6353 1.409790 TCAAAACTTCACGGACCTCGA 59.590 47.619 0.00 0.00 42.43 4.04
2299 6354 1.525619 CAAAACTTCACGGACCTCGAC 59.474 52.381 0.00 0.00 42.43 4.20
2300 6355 0.748450 AAACTTCACGGACCTCGACA 59.252 50.000 0.00 0.00 42.43 4.35
2301 6356 0.031721 AACTTCACGGACCTCGACAC 59.968 55.000 0.00 0.00 42.43 3.67
2302 6357 1.105167 ACTTCACGGACCTCGACACA 61.105 55.000 0.00 0.00 42.43 3.72
2303 6358 0.663568 CTTCACGGACCTCGACACAC 60.664 60.000 0.00 0.00 42.43 3.82
2304 6359 2.049433 CACGGACCTCGACACACC 60.049 66.667 0.00 0.00 42.43 4.16
2306 6361 4.415332 CGGACCTCGACACACCGG 62.415 72.222 0.00 0.00 42.43 5.28
2307 6362 4.736896 GGACCTCGACACACCGGC 62.737 72.222 0.00 0.00 0.00 6.13
2308 6363 3.986006 GACCTCGACACACCGGCA 61.986 66.667 0.00 0.00 0.00 5.69
2315 6384 1.805945 GACACACCGGCATCGACTC 60.806 63.158 0.00 0.00 39.00 3.36
2317 6386 4.129737 ACACCGGCATCGACTCCG 62.130 66.667 17.43 17.43 44.89 4.63
2367 6437 5.927954 TTCAACGTAACATAACCTTCACC 57.072 39.130 0.00 0.00 0.00 4.02
2368 6438 5.217978 TCAACGTAACATAACCTTCACCT 57.782 39.130 0.00 0.00 0.00 4.00
2413 6483 2.597217 CCAAGCGGGGACAAAGCA 60.597 61.111 0.00 0.00 0.00 3.91
2419 6489 1.250840 GCGGGGACAAAGCAGGAAAT 61.251 55.000 0.00 0.00 0.00 2.17
2462 6532 2.043852 ATCGTCTCTCGCCACCCT 60.044 61.111 0.00 0.00 39.67 4.34
2528 7117 0.904865 ACTGATGGCGTGAGAGGGAA 60.905 55.000 0.00 0.00 0.00 3.97
2584 7178 2.165641 TGGCGTGTACACCTTAGAGATG 59.834 50.000 20.11 4.05 0.00 2.90
2608 7202 6.320418 TGCATGTACTTTTAGAGGTAGATCGA 59.680 38.462 0.00 0.00 0.00 3.59
2614 7208 9.636879 GTACTTTTAGAGGTAGATCGAAACTTT 57.363 33.333 0.00 0.00 0.00 2.66
2616 7210 9.857957 ACTTTTAGAGGTAGATCGAAACTTTAG 57.142 33.333 0.00 0.00 0.00 1.85
2629 7223 0.896226 ACTTTAGGAGCCTCGACACC 59.104 55.000 0.00 0.00 0.00 4.16
2676 7274 2.965147 CCACAGGATCCAAACAAAACCT 59.035 45.455 15.82 0.00 0.00 3.50
2677 7275 4.148838 CCACAGGATCCAAACAAAACCTA 58.851 43.478 15.82 0.00 0.00 3.08
2698 7296 5.580691 CCTAGTTGAACATAATCTTCACGCA 59.419 40.000 0.00 0.00 0.00 5.24
2777 7375 1.815421 CATCTTCAAGGCGGACCCG 60.815 63.158 3.73 3.73 43.09 5.28
2815 7413 2.125673 CGGACCGTCGAAGCCATT 60.126 61.111 5.48 0.00 0.00 3.16
2820 7418 1.289109 ACCGTCGAAGCCATTCAACG 61.289 55.000 0.00 0.00 43.79 4.10
2821 7419 1.225745 CGTCGAAGCCATTCAACGC 60.226 57.895 0.00 0.00 38.84 4.84
2836 7434 3.036084 CGCGGGCATGTATCGGTC 61.036 66.667 0.00 0.00 0.00 4.79
2837 7435 2.421739 GCGGGCATGTATCGGTCT 59.578 61.111 0.00 0.00 0.00 3.85
2838 7436 1.956170 GCGGGCATGTATCGGTCTG 60.956 63.158 0.00 0.00 0.00 3.51
2844 7442 3.165160 ATGTATCGGTCTGCGGGGC 62.165 63.158 0.00 0.00 0.00 5.80
2862 7460 1.666872 CGGTCCGGACGCTTTTTCT 60.667 57.895 27.68 0.00 0.00 2.52
2881 7479 1.275291 CTCCCGCAAACCAGAGACTAA 59.725 52.381 0.00 0.00 0.00 2.24
2893 7491 2.907042 CAGAGACTAAGTGGGGGAAGTT 59.093 50.000 0.00 0.00 0.00 2.66
2897 7495 1.165270 CTAAGTGGGGGAAGTTTGCG 58.835 55.000 0.00 0.00 0.00 4.85
2917 7515 1.622725 GGGAGCCCGGATACCAGATAT 60.623 57.143 0.73 0.00 0.00 1.63
2993 7591 2.310052 CACCCTCCCCATTTTCTCTTCT 59.690 50.000 0.00 0.00 0.00 2.85
2999 7597 4.923415 TCCCCATTTTCTCTTCTTCCTTC 58.077 43.478 0.00 0.00 0.00 3.46
3052 7650 4.097361 GGCCCTGGACGAAGGACC 62.097 72.222 0.00 0.00 40.02 4.46
3053 7651 3.319198 GCCCTGGACGAAGGACCA 61.319 66.667 0.00 0.00 40.02 4.02
3054 7652 2.670148 GCCCTGGACGAAGGACCAT 61.670 63.158 0.00 0.00 40.02 3.55
3055 7653 1.221840 CCCTGGACGAAGGACCATG 59.778 63.158 0.00 0.00 40.02 3.66
3056 7654 1.221840 CCTGGACGAAGGACCATGG 59.778 63.158 11.19 11.19 40.02 3.66
3057 7655 1.264749 CCTGGACGAAGGACCATGGA 61.265 60.000 21.47 0.00 40.02 3.41
3058 7656 0.833287 CTGGACGAAGGACCATGGAT 59.167 55.000 21.47 1.98 37.44 3.41
3059 7657 0.541392 TGGACGAAGGACCATGGATG 59.459 55.000 21.47 3.48 33.79 3.51
3060 7658 0.541863 GGACGAAGGACCATGGATGT 59.458 55.000 21.47 6.86 0.00 3.06
3061 7659 1.065418 GGACGAAGGACCATGGATGTT 60.065 52.381 21.47 7.88 0.00 2.71
3062 7660 2.618045 GGACGAAGGACCATGGATGTTT 60.618 50.000 21.47 7.00 0.00 2.83
3063 7661 2.420022 GACGAAGGACCATGGATGTTTG 59.580 50.000 21.47 13.61 0.00 2.93
3064 7662 1.745087 CGAAGGACCATGGATGTTTGG 59.255 52.381 21.47 4.84 39.02 3.28
3065 7663 2.102578 GAAGGACCATGGATGTTTGGG 58.897 52.381 21.47 0.00 37.32 4.12
3066 7664 1.381867 AGGACCATGGATGTTTGGGA 58.618 50.000 21.47 0.00 37.32 4.37
3067 7665 1.715931 AGGACCATGGATGTTTGGGAA 59.284 47.619 21.47 0.00 37.32 3.97
3068 7666 2.102578 GGACCATGGATGTTTGGGAAG 58.897 52.381 21.47 0.00 37.32 3.46
3069 7667 2.557452 GGACCATGGATGTTTGGGAAGT 60.557 50.000 21.47 0.00 37.32 3.01
3070 7668 2.755103 GACCATGGATGTTTGGGAAGTC 59.245 50.000 21.47 0.00 37.32 3.01
3071 7669 1.745087 CCATGGATGTTTGGGAAGTCG 59.255 52.381 5.56 0.00 0.00 4.18
3072 7670 2.436417 CATGGATGTTTGGGAAGTCGT 58.564 47.619 0.00 0.00 0.00 4.34
3073 7671 2.649531 TGGATGTTTGGGAAGTCGTT 57.350 45.000 0.00 0.00 0.00 3.85
3074 7672 2.226330 TGGATGTTTGGGAAGTCGTTG 58.774 47.619 0.00 0.00 0.00 4.10
3075 7673 2.227194 GGATGTTTGGGAAGTCGTTGT 58.773 47.619 0.00 0.00 0.00 3.32
3076 7674 2.621526 GGATGTTTGGGAAGTCGTTGTT 59.378 45.455 0.00 0.00 0.00 2.83
3077 7675 3.550030 GGATGTTTGGGAAGTCGTTGTTG 60.550 47.826 0.00 0.00 0.00 3.33
3078 7676 1.746220 TGTTTGGGAAGTCGTTGTTGG 59.254 47.619 0.00 0.00 0.00 3.77
3079 7677 1.746787 GTTTGGGAAGTCGTTGTTGGT 59.253 47.619 0.00 0.00 0.00 3.67
3080 7678 1.384525 TTGGGAAGTCGTTGTTGGTG 58.615 50.000 0.00 0.00 0.00 4.17
3081 7679 0.464735 TGGGAAGTCGTTGTTGGTGG 60.465 55.000 0.00 0.00 0.00 4.61
3082 7680 0.464916 GGGAAGTCGTTGTTGGTGGT 60.465 55.000 0.00 0.00 0.00 4.16
3083 7681 1.385528 GGAAGTCGTTGTTGGTGGTT 58.614 50.000 0.00 0.00 0.00 3.67
3084 7682 1.064952 GGAAGTCGTTGTTGGTGGTTG 59.935 52.381 0.00 0.00 0.00 3.77
3085 7683 2.011222 GAAGTCGTTGTTGGTGGTTGA 58.989 47.619 0.00 0.00 0.00 3.18
3086 7684 2.116827 AGTCGTTGTTGGTGGTTGAA 57.883 45.000 0.00 0.00 0.00 2.69
3087 7685 2.014128 AGTCGTTGTTGGTGGTTGAAG 58.986 47.619 0.00 0.00 0.00 3.02
3088 7686 2.011222 GTCGTTGTTGGTGGTTGAAGA 58.989 47.619 0.00 0.00 0.00 2.87
3089 7687 2.616842 GTCGTTGTTGGTGGTTGAAGAT 59.383 45.455 0.00 0.00 0.00 2.40
3090 7688 3.066203 GTCGTTGTTGGTGGTTGAAGATT 59.934 43.478 0.00 0.00 0.00 2.40
3091 7689 3.697045 TCGTTGTTGGTGGTTGAAGATTT 59.303 39.130 0.00 0.00 0.00 2.17
3092 7690 4.158764 TCGTTGTTGGTGGTTGAAGATTTT 59.841 37.500 0.00 0.00 0.00 1.82
3093 7691 4.267452 CGTTGTTGGTGGTTGAAGATTTTG 59.733 41.667 0.00 0.00 0.00 2.44
3094 7692 5.415221 GTTGTTGGTGGTTGAAGATTTTGA 58.585 37.500 0.00 0.00 0.00 2.69
3095 7693 5.867903 TGTTGGTGGTTGAAGATTTTGAT 57.132 34.783 0.00 0.00 0.00 2.57
3096 7694 5.841810 TGTTGGTGGTTGAAGATTTTGATC 58.158 37.500 0.00 0.00 0.00 2.92
3097 7695 5.221422 TGTTGGTGGTTGAAGATTTTGATCC 60.221 40.000 0.00 0.00 0.00 3.36
3098 7696 3.505680 TGGTGGTTGAAGATTTTGATCCG 59.494 43.478 0.00 0.00 0.00 4.18
3099 7697 3.756434 GGTGGTTGAAGATTTTGATCCGA 59.244 43.478 0.00 0.00 0.00 4.55
3100 7698 4.399303 GGTGGTTGAAGATTTTGATCCGAT 59.601 41.667 0.00 0.00 0.00 4.18
3101 7699 5.335127 GTGGTTGAAGATTTTGATCCGATG 58.665 41.667 0.00 0.00 0.00 3.84
3102 7700 5.123820 GTGGTTGAAGATTTTGATCCGATGA 59.876 40.000 0.00 0.00 0.00 2.92
3103 7701 5.709631 TGGTTGAAGATTTTGATCCGATGAA 59.290 36.000 0.00 0.00 0.00 2.57
3104 7702 6.208402 TGGTTGAAGATTTTGATCCGATGAAA 59.792 34.615 0.00 0.00 0.00 2.69
3105 7703 7.090173 GGTTGAAGATTTTGATCCGATGAAAA 58.910 34.615 8.00 8.00 30.31 2.29
3106 7704 7.274250 GGTTGAAGATTTTGATCCGATGAAAAG 59.726 37.037 10.81 0.00 29.30 2.27
3107 7705 6.324819 TGAAGATTTTGATCCGATGAAAAGC 58.675 36.000 11.85 11.85 33.07 3.51
3108 7706 5.902613 AGATTTTGATCCGATGAAAAGCA 57.097 34.783 19.11 0.00 34.87 3.91
3109 7707 5.644644 AGATTTTGATCCGATGAAAAGCAC 58.355 37.500 19.11 10.10 34.87 4.40
3110 7708 3.848272 TTTGATCCGATGAAAAGCACC 57.152 42.857 0.00 0.00 0.00 5.01
3111 7709 2.488204 TGATCCGATGAAAAGCACCA 57.512 45.000 0.00 0.00 0.00 4.17
3112 7710 2.789213 TGATCCGATGAAAAGCACCAA 58.211 42.857 0.00 0.00 0.00 3.67
3113 7711 2.749076 TGATCCGATGAAAAGCACCAAG 59.251 45.455 0.00 0.00 0.00 3.61
3114 7712 1.533625 TCCGATGAAAAGCACCAAGG 58.466 50.000 0.00 0.00 0.00 3.61
3115 7713 1.073125 TCCGATGAAAAGCACCAAGGA 59.927 47.619 0.00 0.00 0.00 3.36
3116 7714 1.470098 CCGATGAAAAGCACCAAGGAG 59.530 52.381 0.00 0.00 0.00 3.69
3117 7715 2.154462 CGATGAAAAGCACCAAGGAGT 58.846 47.619 0.00 0.00 0.00 3.85
3118 7716 3.334691 CGATGAAAAGCACCAAGGAGTA 58.665 45.455 0.00 0.00 0.00 2.59
3119 7717 3.941483 CGATGAAAAGCACCAAGGAGTAT 59.059 43.478 0.00 0.00 0.00 2.12
3120 7718 4.201851 CGATGAAAAGCACCAAGGAGTATG 60.202 45.833 0.00 0.00 0.00 2.39
3121 7719 4.365514 TGAAAAGCACCAAGGAGTATGA 57.634 40.909 0.00 0.00 0.00 2.15
3122 7720 4.326826 TGAAAAGCACCAAGGAGTATGAG 58.673 43.478 0.00 0.00 0.00 2.90
3123 7721 4.202461 TGAAAAGCACCAAGGAGTATGAGT 60.202 41.667 0.00 0.00 0.00 3.41
3124 7722 4.373156 AAAGCACCAAGGAGTATGAGTT 57.627 40.909 0.00 0.00 0.00 3.01
3125 7723 3.618690 AGCACCAAGGAGTATGAGTTC 57.381 47.619 0.00 0.00 0.00 3.01
3126 7724 2.906389 AGCACCAAGGAGTATGAGTTCA 59.094 45.455 0.00 0.00 0.00 3.18
3127 7725 3.327757 AGCACCAAGGAGTATGAGTTCAA 59.672 43.478 0.00 0.00 0.00 2.69
3128 7726 4.072131 GCACCAAGGAGTATGAGTTCAAA 58.928 43.478 0.00 0.00 0.00 2.69
3129 7727 4.083271 GCACCAAGGAGTATGAGTTCAAAC 60.083 45.833 0.00 0.00 0.00 2.93
3130 7728 4.152402 CACCAAGGAGTATGAGTTCAAACG 59.848 45.833 0.00 0.00 0.00 3.60
3131 7729 3.684788 CCAAGGAGTATGAGTTCAAACGG 59.315 47.826 0.00 0.00 0.00 4.44
3132 7730 3.611766 AGGAGTATGAGTTCAAACGGG 57.388 47.619 0.00 0.00 0.00 5.28
3133 7731 2.904434 AGGAGTATGAGTTCAAACGGGT 59.096 45.455 0.00 0.00 0.00 5.28
3134 7732 3.000727 GGAGTATGAGTTCAAACGGGTG 58.999 50.000 0.00 0.00 0.00 4.61
3135 7733 2.415512 GAGTATGAGTTCAAACGGGTGC 59.584 50.000 0.00 0.00 0.00 5.01
3136 7734 1.467342 GTATGAGTTCAAACGGGTGCC 59.533 52.381 0.00 0.00 0.00 5.01
3147 7745 2.034999 GGGTGCCGATTTGGGTGA 59.965 61.111 0.00 0.00 38.63 4.02
3148 7746 2.046285 GGGTGCCGATTTGGGTGAG 61.046 63.158 0.00 0.00 38.63 3.51
3149 7747 1.002624 GGTGCCGATTTGGGTGAGA 60.003 57.895 0.00 0.00 38.63 3.27
3150 7748 1.026718 GGTGCCGATTTGGGTGAGAG 61.027 60.000 0.00 0.00 38.63 3.20
3151 7749 0.321653 GTGCCGATTTGGGTGAGAGT 60.322 55.000 0.00 0.00 38.63 3.24
3152 7750 0.036388 TGCCGATTTGGGTGAGAGTC 60.036 55.000 0.00 0.00 38.63 3.36
3153 7751 0.250513 GCCGATTTGGGTGAGAGTCT 59.749 55.000 0.00 0.00 38.63 3.24
3154 7752 1.339151 GCCGATTTGGGTGAGAGTCTT 60.339 52.381 0.00 0.00 38.63 3.01
3155 7753 2.622436 CCGATTTGGGTGAGAGTCTTC 58.378 52.381 0.00 0.00 0.00 2.87
3156 7754 2.263077 CGATTTGGGTGAGAGTCTTCG 58.737 52.381 0.00 0.00 0.00 3.79
3157 7755 2.094700 CGATTTGGGTGAGAGTCTTCGA 60.095 50.000 0.00 0.00 0.00 3.71
3158 7756 3.429547 CGATTTGGGTGAGAGTCTTCGAT 60.430 47.826 0.00 0.00 0.00 3.59
3159 7757 3.594603 TTTGGGTGAGAGTCTTCGATC 57.405 47.619 0.00 0.00 0.00 3.69
3160 7758 2.516227 TGGGTGAGAGTCTTCGATCT 57.484 50.000 0.00 0.00 0.00 2.75
3161 7759 3.646736 TGGGTGAGAGTCTTCGATCTA 57.353 47.619 0.00 0.00 0.00 1.98
3162 7760 3.280295 TGGGTGAGAGTCTTCGATCTAC 58.720 50.000 0.00 0.00 0.00 2.59
3163 7761 2.619646 GGGTGAGAGTCTTCGATCTACC 59.380 54.545 0.00 0.00 0.00 3.18
3164 7762 2.288458 GGTGAGAGTCTTCGATCTACCG 59.712 54.545 0.00 0.00 0.00 4.02
3165 7763 1.941294 TGAGAGTCTTCGATCTACCGC 59.059 52.381 0.00 0.00 0.00 5.68
3166 7764 2.215196 GAGAGTCTTCGATCTACCGCT 58.785 52.381 0.00 0.00 0.00 5.52
3167 7765 1.944024 AGAGTCTTCGATCTACCGCTG 59.056 52.381 0.00 0.00 0.00 5.18
3168 7766 1.002251 GAGTCTTCGATCTACCGCTGG 60.002 57.143 0.00 0.00 0.00 4.85
3169 7767 0.030908 GTCTTCGATCTACCGCTGGG 59.969 60.000 0.00 0.00 40.11 4.45
3170 7768 0.106868 TCTTCGATCTACCGCTGGGA 60.107 55.000 0.00 0.00 36.97 4.37
3171 7769 0.744874 CTTCGATCTACCGCTGGGAA 59.255 55.000 0.00 0.00 36.97 3.97
3172 7770 1.341531 CTTCGATCTACCGCTGGGAAT 59.658 52.381 0.00 0.00 36.97 3.01
3173 7771 0.673985 TCGATCTACCGCTGGGAATG 59.326 55.000 0.00 0.00 36.97 2.67
3174 7772 0.673985 CGATCTACCGCTGGGAATGA 59.326 55.000 0.00 0.00 36.97 2.57
3175 7773 1.273606 CGATCTACCGCTGGGAATGAT 59.726 52.381 0.00 0.00 36.97 2.45
3176 7774 2.693069 GATCTACCGCTGGGAATGATG 58.307 52.381 0.00 0.00 36.97 3.07
3177 7775 1.496060 TCTACCGCTGGGAATGATGT 58.504 50.000 0.00 0.00 36.97 3.06
3178 7776 1.138859 TCTACCGCTGGGAATGATGTG 59.861 52.381 0.00 0.00 36.97 3.21
3179 7777 0.908910 TACCGCTGGGAATGATGTGT 59.091 50.000 0.00 0.00 36.97 3.72
3180 7778 0.392998 ACCGCTGGGAATGATGTGTC 60.393 55.000 0.00 0.00 36.97 3.67
3181 7779 1.431488 CCGCTGGGAATGATGTGTCG 61.431 60.000 0.00 0.00 34.06 4.35
3182 7780 1.723870 GCTGGGAATGATGTGTCGC 59.276 57.895 0.00 0.00 0.00 5.19
3183 7781 2.009108 CTGGGAATGATGTGTCGCG 58.991 57.895 0.00 0.00 0.00 5.87
3184 7782 0.460109 CTGGGAATGATGTGTCGCGA 60.460 55.000 3.71 3.71 0.00 5.87
3185 7783 0.177836 TGGGAATGATGTGTCGCGAT 59.822 50.000 14.06 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 3686 3.497227 GCAGTACCCTGGGTTGAAAACTA 60.497 47.826 26.00 0.00 42.17 2.24
98 3769 9.558396 TTCCAAAACTAAATAAAGAACCGACTA 57.442 29.630 0.00 0.00 0.00 2.59
158 3835 7.589574 TTCAAAAACAGTTTCACCTTTTAGC 57.410 32.000 0.00 0.00 0.00 3.09
309 3991 2.906389 ACTTACCAGAGCATGTCAAGGA 59.094 45.455 0.00 0.00 0.00 3.36
323 4005 3.331150 CAACAATCTACGCCACTTACCA 58.669 45.455 0.00 0.00 0.00 3.25
375 4057 0.318699 TGTCTGACAAGAAGACCGCG 60.319 55.000 8.27 0.00 42.85 6.46
379 4061 2.533266 TGCCTGTCTGACAAGAAGAC 57.467 50.000 12.16 0.00 43.62 3.01
385 4067 3.402186 CAGGTTGCCTGTCTGACAA 57.598 52.632 12.16 0.00 45.82 3.18
396 4078 1.518903 GGTGAAGACAGGCAGGTTGC 61.519 60.000 0.00 0.00 44.08 4.17
429 4111 2.933287 ACATCCTGGCCAACCCGA 60.933 61.111 7.01 0.00 35.87 5.14
440 4122 0.327480 TGCATGGTAGGGGACATCCT 60.327 55.000 0.00 0.00 40.79 3.24
546 4234 8.831715 TTTTCAGAAAGAAATGGATTTTAGCC 57.168 30.769 0.00 0.00 45.15 3.93
572 4260 5.634859 GCATTCACTTTTCAACCGAATTGAT 59.365 36.000 3.33 0.00 46.80 2.57
589 4277 6.908825 TGGAAAACATAGTTACTGCATTCAC 58.091 36.000 0.00 0.00 0.00 3.18
616 4331 5.280215 GGTCTTCTATGATAGGAATGGGGTG 60.280 48.000 0.00 0.00 0.00 4.61
824 4598 2.611473 CGGATGCGGCTATTCTCTCATT 60.611 50.000 0.00 0.00 0.00 2.57
862 4653 2.443324 CCCGGGGGTTCCACAAAT 59.557 61.111 14.71 0.00 34.36 2.32
896 4687 0.248565 ATGGGAGATCGATCATGCCG 59.751 55.000 26.47 1.62 0.00 5.69
897 4688 2.082231 CAATGGGAGATCGATCATGCC 58.918 52.381 26.47 23.05 0.00 4.40
898 4689 2.775890 ACAATGGGAGATCGATCATGC 58.224 47.619 26.47 15.94 0.00 4.06
899 4690 5.506815 CCAAAACAATGGGAGATCGATCATG 60.507 44.000 26.47 16.06 36.79 3.07
954 4745 2.500392 TTATAGGTGTGTTGGCCCAC 57.500 50.000 0.00 0.00 35.86 4.61
1003 4808 1.059584 AGTGGTGGTGGTGATGGTGA 61.060 55.000 0.00 0.00 0.00 4.02
1420 5256 1.376683 CGAAACCGGGATGCCTGAA 60.377 57.895 6.32 0.00 29.82 3.02
1434 5273 4.302509 TCGAAGGCCGCCACGAAA 62.303 61.111 22.89 7.51 38.37 3.46
1793 5704 1.056750 CCAATTTCGTCGTCGTCGC 59.943 57.895 7.01 0.00 38.33 5.19
1794 5705 1.700029 CCCAATTTCGTCGTCGTCG 59.300 57.895 5.50 5.50 38.33 5.12
1984 5923 6.347240 CCATTTTTGTCTCTTTGTCTCTCTCG 60.347 42.308 0.00 0.00 0.00 4.04
1993 5957 6.667007 AAAACTGCCATTTTTGTCTCTTTG 57.333 33.333 0.00 0.00 0.00 2.77
2043 6007 3.954904 TCTCTCTTATAGGCACTGGTGTC 59.045 47.826 0.00 0.00 41.52 3.67
2044 6008 3.982516 TCTCTCTTATAGGCACTGGTGT 58.017 45.455 2.64 0.00 41.52 4.16
2049 6013 8.093927 GCATTATTCTTCTCTCTTATAGGCACT 58.906 37.037 0.00 0.00 46.37 4.40
2050 6014 7.333174 GGCATTATTCTTCTCTCTTATAGGCAC 59.667 40.741 0.00 0.00 0.00 5.01
2053 6017 7.607250 ACGGCATTATTCTTCTCTCTTATAGG 58.393 38.462 0.00 0.00 0.00 2.57
2054 6018 9.562583 GTACGGCATTATTCTTCTCTCTTATAG 57.437 37.037 0.00 0.00 0.00 1.31
2055 6019 8.521176 GGTACGGCATTATTCTTCTCTCTTATA 58.479 37.037 0.00 0.00 0.00 0.98
2056 6020 7.233757 AGGTACGGCATTATTCTTCTCTCTTAT 59.766 37.037 0.00 0.00 0.00 1.73
2057 6021 6.550108 AGGTACGGCATTATTCTTCTCTCTTA 59.450 38.462 0.00 0.00 0.00 2.10
2058 6022 5.364157 AGGTACGGCATTATTCTTCTCTCTT 59.636 40.000 0.00 0.00 0.00 2.85
2076 6055 3.611766 AATCTCCAGGTTTCAGGTACG 57.388 47.619 0.00 0.00 0.00 3.67
2181 6166 2.878406 CCCCCTTACGCAGTCATTTATG 59.122 50.000 0.00 0.00 43.93 1.90
2196 6214 2.120718 AGTCGCTCACTCCCCCTT 59.879 61.111 0.00 0.00 0.00 3.95
2295 6350 3.366915 TCGATGCCGGTGTGTCGA 61.367 61.111 15.16 15.16 40.38 4.20
2296 6351 3.179265 GTCGATGCCGGTGTGTCG 61.179 66.667 1.90 8.41 36.24 4.35
2297 6352 1.805945 GAGTCGATGCCGGTGTGTC 60.806 63.158 1.90 0.00 36.24 3.67
2298 6353 2.261671 GAGTCGATGCCGGTGTGT 59.738 61.111 1.90 0.00 36.24 3.72
2299 6354 2.509336 GGAGTCGATGCCGGTGTG 60.509 66.667 1.90 0.00 36.24 3.82
2300 6355 4.129737 CGGAGTCGATGCCGGTGT 62.130 66.667 17.94 0.00 43.67 4.16
2306 6361 4.819761 TGCAGGCGGAGTCGATGC 62.820 66.667 0.00 0.00 44.94 3.91
2307 6362 2.887568 GTGCAGGCGGAGTCGATG 60.888 66.667 0.00 0.00 36.95 3.84
2308 6363 3.381983 TGTGCAGGCGGAGTCGAT 61.382 61.111 0.00 0.00 36.95 3.59
2331 6401 4.766404 ACGTTGAATCTTGTTTGATCCC 57.234 40.909 0.00 0.00 0.00 3.85
2383 6453 2.674380 CTTGGGTGGTGCCTCTGC 60.674 66.667 0.00 0.00 37.43 4.26
2384 6454 2.674380 GCTTGGGTGGTGCCTCTG 60.674 66.667 0.00 0.00 37.43 3.35
2413 6483 6.394345 AGAGTTGGAATAAGGTCATTTCCT 57.606 37.500 0.00 0.00 39.72 3.36
2419 6489 4.401519 CGTCCTAGAGTTGGAATAAGGTCA 59.598 45.833 0.00 0.00 35.10 4.02
2462 6532 5.624344 TTTTACGTTTTGTGTCTGTTCCA 57.376 34.783 0.00 0.00 0.00 3.53
2488 7074 1.166129 GGGCTTCCGTTTCTTCCTTC 58.834 55.000 0.00 0.00 0.00 3.46
2528 7117 8.565896 TTTAATAGTGCAATCAATCACTCACT 57.434 30.769 0.00 0.00 42.06 3.41
2584 7178 6.736123 TCGATCTACCTCTAAAAGTACATGC 58.264 40.000 0.00 0.00 0.00 4.06
2608 7202 2.289506 GGTGTCGAGGCTCCTAAAGTTT 60.290 50.000 9.32 0.00 0.00 2.66
2614 7208 3.138798 GCGGTGTCGAGGCTCCTA 61.139 66.667 9.32 0.00 39.00 2.94
2676 7274 7.041721 AGATGCGTGAAGATTATGTTCAACTA 58.958 34.615 6.36 0.00 35.71 2.24
2677 7275 5.877012 AGATGCGTGAAGATTATGTTCAACT 59.123 36.000 6.36 0.38 35.71 3.16
2777 7375 3.747976 AGATGCGGGCGGTTTTGC 61.748 61.111 0.00 0.00 0.00 3.68
2815 7413 1.880796 CGATACATGCCCGCGTTGA 60.881 57.895 4.92 0.00 0.00 3.18
2820 7418 1.956170 CAGACCGATACATGCCCGC 60.956 63.158 0.00 0.00 0.00 6.13
2821 7419 1.956170 GCAGACCGATACATGCCCG 60.956 63.158 0.00 0.00 32.49 6.13
2844 7442 1.623973 GAGAAAAAGCGTCCGGACCG 61.624 60.000 28.52 22.76 0.00 4.79
2846 7444 1.296755 GGGAGAAAAAGCGTCCGGAC 61.297 60.000 25.28 25.28 0.00 4.79
2862 7460 1.275291 CTTAGTCTCTGGTTTGCGGGA 59.725 52.381 0.00 0.00 0.00 5.14
2881 7479 2.115266 CCGCAAACTTCCCCCACT 59.885 61.111 0.00 0.00 0.00 4.00
2897 7495 0.252103 TATCTGGTATCCGGGCTCCC 60.252 60.000 0.00 0.00 0.00 4.30
2917 7515 1.640917 GAGGGTGTTGGAGTCCTACA 58.359 55.000 20.72 20.72 36.96 2.74
2978 7576 4.928263 AGAAGGAAGAAGAGAAAATGGGG 58.072 43.478 0.00 0.00 0.00 4.96
2993 7591 4.646572 GAAGGCAAGAGAGAAAGAAGGAA 58.353 43.478 0.00 0.00 0.00 3.36
2999 7597 1.989165 CGACGAAGGCAAGAGAGAAAG 59.011 52.381 0.00 0.00 0.00 2.62
3039 7637 0.833287 ATCCATGGTCCTTCGTCCAG 59.167 55.000 12.58 0.00 37.14 3.86
3040 7638 0.541392 CATCCATGGTCCTTCGTCCA 59.459 55.000 12.58 0.00 38.14 4.02
3041 7639 0.541863 ACATCCATGGTCCTTCGTCC 59.458 55.000 12.58 0.00 0.00 4.79
3042 7640 2.403252 AACATCCATGGTCCTTCGTC 57.597 50.000 12.58 0.00 0.00 4.20
3043 7641 2.436417 CAAACATCCATGGTCCTTCGT 58.564 47.619 12.58 0.00 0.00 3.85
3044 7642 1.745087 CCAAACATCCATGGTCCTTCG 59.255 52.381 12.58 0.00 31.84 3.79
3045 7643 2.102578 CCCAAACATCCATGGTCCTTC 58.897 52.381 12.58 0.00 34.79 3.46
3046 7644 1.715931 TCCCAAACATCCATGGTCCTT 59.284 47.619 12.58 0.00 34.79 3.36
3047 7645 1.381867 TCCCAAACATCCATGGTCCT 58.618 50.000 12.58 0.00 34.79 3.85
3048 7646 2.102578 CTTCCCAAACATCCATGGTCC 58.897 52.381 12.58 0.00 34.79 4.46
3049 7647 2.755103 GACTTCCCAAACATCCATGGTC 59.245 50.000 12.58 0.00 34.79 4.02
3050 7648 2.807676 GACTTCCCAAACATCCATGGT 58.192 47.619 12.58 0.00 34.79 3.55
3051 7649 1.745087 CGACTTCCCAAACATCCATGG 59.255 52.381 4.97 4.97 36.42 3.66
3052 7650 2.436417 ACGACTTCCCAAACATCCATG 58.564 47.619 0.00 0.00 0.00 3.66
3053 7651 2.819608 CAACGACTTCCCAAACATCCAT 59.180 45.455 0.00 0.00 0.00 3.41
3054 7652 2.226330 CAACGACTTCCCAAACATCCA 58.774 47.619 0.00 0.00 0.00 3.41
3055 7653 2.227194 ACAACGACTTCCCAAACATCC 58.773 47.619 0.00 0.00 0.00 3.51
3056 7654 3.550030 CCAACAACGACTTCCCAAACATC 60.550 47.826 0.00 0.00 0.00 3.06
3057 7655 2.360801 CCAACAACGACTTCCCAAACAT 59.639 45.455 0.00 0.00 0.00 2.71
3058 7656 1.746220 CCAACAACGACTTCCCAAACA 59.254 47.619 0.00 0.00 0.00 2.83
3059 7657 1.746787 ACCAACAACGACTTCCCAAAC 59.253 47.619 0.00 0.00 0.00 2.93
3060 7658 1.746220 CACCAACAACGACTTCCCAAA 59.254 47.619 0.00 0.00 0.00 3.28
3061 7659 1.384525 CACCAACAACGACTTCCCAA 58.615 50.000 0.00 0.00 0.00 4.12
3062 7660 0.464735 CCACCAACAACGACTTCCCA 60.465 55.000 0.00 0.00 0.00 4.37
3063 7661 0.464916 ACCACCAACAACGACTTCCC 60.465 55.000 0.00 0.00 0.00 3.97
3064 7662 1.064952 CAACCACCAACAACGACTTCC 59.935 52.381 0.00 0.00 0.00 3.46
3065 7663 2.011222 TCAACCACCAACAACGACTTC 58.989 47.619 0.00 0.00 0.00 3.01
3066 7664 2.116827 TCAACCACCAACAACGACTT 57.883 45.000 0.00 0.00 0.00 3.01
3067 7665 2.014128 CTTCAACCACCAACAACGACT 58.986 47.619 0.00 0.00 0.00 4.18
3068 7666 2.011222 TCTTCAACCACCAACAACGAC 58.989 47.619 0.00 0.00 0.00 4.34
3069 7667 2.404923 TCTTCAACCACCAACAACGA 57.595 45.000 0.00 0.00 0.00 3.85
3070 7668 3.708563 AATCTTCAACCACCAACAACG 57.291 42.857 0.00 0.00 0.00 4.10
3071 7669 5.415221 TCAAAATCTTCAACCACCAACAAC 58.585 37.500 0.00 0.00 0.00 3.32
3072 7670 5.667539 TCAAAATCTTCAACCACCAACAA 57.332 34.783 0.00 0.00 0.00 2.83
3073 7671 5.221422 GGATCAAAATCTTCAACCACCAACA 60.221 40.000 0.00 0.00 32.12 3.33
3074 7672 5.230182 GGATCAAAATCTTCAACCACCAAC 58.770 41.667 0.00 0.00 32.12 3.77
3075 7673 4.022416 CGGATCAAAATCTTCAACCACCAA 60.022 41.667 0.00 0.00 32.12 3.67
3076 7674 3.505680 CGGATCAAAATCTTCAACCACCA 59.494 43.478 0.00 0.00 32.12 4.17
3077 7675 3.756434 TCGGATCAAAATCTTCAACCACC 59.244 43.478 0.00 0.00 32.12 4.61
3078 7676 5.123820 TCATCGGATCAAAATCTTCAACCAC 59.876 40.000 0.00 0.00 32.12 4.16
3079 7677 5.252547 TCATCGGATCAAAATCTTCAACCA 58.747 37.500 0.00 0.00 32.12 3.67
3080 7678 5.818136 TCATCGGATCAAAATCTTCAACC 57.182 39.130 0.00 0.00 32.12 3.77
3081 7679 7.201384 GCTTTTCATCGGATCAAAATCTTCAAC 60.201 37.037 0.14 0.00 32.12 3.18
3082 7680 6.808212 GCTTTTCATCGGATCAAAATCTTCAA 59.192 34.615 0.14 0.00 32.12 2.69
3083 7681 6.072008 TGCTTTTCATCGGATCAAAATCTTCA 60.072 34.615 0.14 0.00 32.12 3.02
3084 7682 6.252228 GTGCTTTTCATCGGATCAAAATCTTC 59.748 38.462 0.14 0.00 32.12 2.87
3085 7683 6.095377 GTGCTTTTCATCGGATCAAAATCTT 58.905 36.000 0.14 0.00 32.12 2.40
3086 7684 5.393461 GGTGCTTTTCATCGGATCAAAATCT 60.393 40.000 0.14 0.00 32.12 2.40
3087 7685 4.800471 GGTGCTTTTCATCGGATCAAAATC 59.200 41.667 0.14 0.00 0.00 2.17
3088 7686 4.220382 TGGTGCTTTTCATCGGATCAAAAT 59.780 37.500 0.14 0.00 0.00 1.82
3089 7687 3.571828 TGGTGCTTTTCATCGGATCAAAA 59.428 39.130 0.00 0.00 0.00 2.44
3090 7688 3.153130 TGGTGCTTTTCATCGGATCAAA 58.847 40.909 0.00 0.00 0.00 2.69
3091 7689 2.789213 TGGTGCTTTTCATCGGATCAA 58.211 42.857 0.00 0.00 0.00 2.57
3092 7690 2.488204 TGGTGCTTTTCATCGGATCA 57.512 45.000 0.00 0.00 0.00 2.92
3093 7691 2.098117 CCTTGGTGCTTTTCATCGGATC 59.902 50.000 0.00 0.00 0.00 3.36
3094 7692 2.094675 CCTTGGTGCTTTTCATCGGAT 58.905 47.619 0.00 0.00 0.00 4.18
3095 7693 1.073125 TCCTTGGTGCTTTTCATCGGA 59.927 47.619 0.00 0.00 0.00 4.55
3096 7694 1.470098 CTCCTTGGTGCTTTTCATCGG 59.530 52.381 0.00 0.00 0.00 4.18
3097 7695 2.154462 ACTCCTTGGTGCTTTTCATCG 58.846 47.619 0.00 0.00 0.00 3.84
3098 7696 4.943705 TCATACTCCTTGGTGCTTTTCATC 59.056 41.667 0.00 0.00 0.00 2.92
3099 7697 4.922206 TCATACTCCTTGGTGCTTTTCAT 58.078 39.130 0.00 0.00 0.00 2.57
3100 7698 4.202461 ACTCATACTCCTTGGTGCTTTTCA 60.202 41.667 0.00 0.00 0.00 2.69
3101 7699 4.327680 ACTCATACTCCTTGGTGCTTTTC 58.672 43.478 0.00 0.00 0.00 2.29
3102 7700 4.373156 ACTCATACTCCTTGGTGCTTTT 57.627 40.909 0.00 0.00 0.00 2.27
3103 7701 4.202461 TGAACTCATACTCCTTGGTGCTTT 60.202 41.667 0.00 0.00 0.00 3.51
3104 7702 3.327757 TGAACTCATACTCCTTGGTGCTT 59.672 43.478 0.00 0.00 0.00 3.91
3105 7703 2.906389 TGAACTCATACTCCTTGGTGCT 59.094 45.455 0.00 0.00 0.00 4.40
3106 7704 3.334583 TGAACTCATACTCCTTGGTGC 57.665 47.619 0.00 0.00 0.00 5.01
3107 7705 4.152402 CGTTTGAACTCATACTCCTTGGTG 59.848 45.833 0.00 0.00 0.00 4.17
3108 7706 4.315803 CGTTTGAACTCATACTCCTTGGT 58.684 43.478 0.00 0.00 0.00 3.67
3109 7707 3.684788 CCGTTTGAACTCATACTCCTTGG 59.315 47.826 0.00 0.00 0.00 3.61
3110 7708 3.684788 CCCGTTTGAACTCATACTCCTTG 59.315 47.826 0.00 0.00 0.00 3.61
3111 7709 3.326880 ACCCGTTTGAACTCATACTCCTT 59.673 43.478 0.00 0.00 0.00 3.36
3112 7710 2.904434 ACCCGTTTGAACTCATACTCCT 59.096 45.455 0.00 0.00 0.00 3.69
3113 7711 3.000727 CACCCGTTTGAACTCATACTCC 58.999 50.000 0.00 0.00 0.00 3.85
3114 7712 2.415512 GCACCCGTTTGAACTCATACTC 59.584 50.000 0.00 0.00 0.00 2.59
3115 7713 2.423577 GCACCCGTTTGAACTCATACT 58.576 47.619 0.00 0.00 0.00 2.12
3116 7714 1.467342 GGCACCCGTTTGAACTCATAC 59.533 52.381 0.00 0.00 0.00 2.39
3117 7715 1.816074 GGCACCCGTTTGAACTCATA 58.184 50.000 0.00 0.00 0.00 2.15
3118 7716 1.234615 CGGCACCCGTTTGAACTCAT 61.235 55.000 0.00 0.00 42.73 2.90
3119 7717 1.890041 CGGCACCCGTTTGAACTCA 60.890 57.895 0.00 0.00 42.73 3.41
3120 7718 2.943653 CGGCACCCGTTTGAACTC 59.056 61.111 0.00 0.00 42.73 3.01
3130 7728 2.034999 TCACCCAAATCGGCACCC 59.965 61.111 0.00 0.00 0.00 4.61
3131 7729 1.002624 TCTCACCCAAATCGGCACC 60.003 57.895 0.00 0.00 0.00 5.01
3132 7730 0.321653 ACTCTCACCCAAATCGGCAC 60.322 55.000 0.00 0.00 0.00 5.01
3133 7731 0.036388 GACTCTCACCCAAATCGGCA 60.036 55.000 0.00 0.00 0.00 5.69
3134 7732 0.250513 AGACTCTCACCCAAATCGGC 59.749 55.000 0.00 0.00 0.00 5.54
3135 7733 2.622436 GAAGACTCTCACCCAAATCGG 58.378 52.381 0.00 0.00 0.00 4.18
3136 7734 2.094700 TCGAAGACTCTCACCCAAATCG 60.095 50.000 0.00 0.00 0.00 3.34
3137 7735 3.594603 TCGAAGACTCTCACCCAAATC 57.405 47.619 0.00 0.00 0.00 2.17
3138 7736 3.772025 AGATCGAAGACTCTCACCCAAAT 59.228 43.478 0.00 0.00 42.51 2.32
3139 7737 3.165875 AGATCGAAGACTCTCACCCAAA 58.834 45.455 0.00 0.00 42.51 3.28
3140 7738 2.808919 AGATCGAAGACTCTCACCCAA 58.191 47.619 0.00 0.00 42.51 4.12
3141 7739 2.516227 AGATCGAAGACTCTCACCCA 57.484 50.000 0.00 0.00 42.51 4.51
3142 7740 2.619646 GGTAGATCGAAGACTCTCACCC 59.380 54.545 0.00 0.00 42.51 4.61
3143 7741 2.288458 CGGTAGATCGAAGACTCTCACC 59.712 54.545 0.00 0.00 42.51 4.02
3144 7742 2.286536 GCGGTAGATCGAAGACTCTCAC 60.287 54.545 0.00 0.00 42.51 3.51
3145 7743 1.941294 GCGGTAGATCGAAGACTCTCA 59.059 52.381 0.00 0.00 42.51 3.27
3146 7744 2.032377 CAGCGGTAGATCGAAGACTCTC 60.032 54.545 0.00 0.00 42.51 3.20
3147 7745 1.944024 CAGCGGTAGATCGAAGACTCT 59.056 52.381 0.00 0.00 42.51 3.24
3148 7746 1.002251 CCAGCGGTAGATCGAAGACTC 60.002 57.143 0.00 0.00 42.51 3.36
3149 7747 1.025812 CCAGCGGTAGATCGAAGACT 58.974 55.000 0.00 0.00 42.51 3.24
3150 7748 0.030908 CCCAGCGGTAGATCGAAGAC 59.969 60.000 0.00 0.00 42.51 3.01
3151 7749 0.106868 TCCCAGCGGTAGATCGAAGA 60.107 55.000 0.00 0.00 45.75 2.87
3152 7750 0.744874 TTCCCAGCGGTAGATCGAAG 59.255 55.000 0.00 0.00 0.00 3.79
3153 7751 1.068588 CATTCCCAGCGGTAGATCGAA 59.931 52.381 0.00 0.00 0.00 3.71
3154 7752 0.673985 CATTCCCAGCGGTAGATCGA 59.326 55.000 0.00 0.00 0.00 3.59
3155 7753 0.673985 TCATTCCCAGCGGTAGATCG 59.326 55.000 0.00 0.00 0.00 3.69
3156 7754 2.037772 ACATCATTCCCAGCGGTAGATC 59.962 50.000 0.00 0.00 0.00 2.75
3157 7755 2.050144 ACATCATTCCCAGCGGTAGAT 58.950 47.619 0.00 0.00 0.00 1.98
3158 7756 1.138859 CACATCATTCCCAGCGGTAGA 59.861 52.381 0.00 0.00 0.00 2.59
3159 7757 1.134401 ACACATCATTCCCAGCGGTAG 60.134 52.381 0.00 0.00 0.00 3.18
3160 7758 0.908910 ACACATCATTCCCAGCGGTA 59.091 50.000 0.00 0.00 0.00 4.02
3161 7759 0.392998 GACACATCATTCCCAGCGGT 60.393 55.000 0.00 0.00 0.00 5.68
3162 7760 1.431488 CGACACATCATTCCCAGCGG 61.431 60.000 0.00 0.00 0.00 5.52
3163 7761 2.009108 CGACACATCATTCCCAGCG 58.991 57.895 0.00 0.00 0.00 5.18
3164 7762 1.723870 GCGACACATCATTCCCAGC 59.276 57.895 0.00 0.00 0.00 4.85
3165 7763 0.460109 TCGCGACACATCATTCCCAG 60.460 55.000 3.71 0.00 0.00 4.45
3166 7764 0.177836 ATCGCGACACATCATTCCCA 59.822 50.000 12.93 0.00 0.00 4.37
3167 7765 2.992089 ATCGCGACACATCATTCCC 58.008 52.632 12.93 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.