Multiple sequence alignment - TraesCS5A01G529000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G529000 chr5A 100.000 4127 0 0 1 4127 688737808 688733682 0.000000e+00 7622.0
1 TraesCS5A01G529000 chr5A 83.448 1160 123 44 1485 2615 688302711 688301592 0.000000e+00 1014.0
2 TraesCS5A01G529000 chr5A 85.106 517 43 21 2656 3141 688301509 688300996 7.970000e-137 497.0
3 TraesCS5A01G529000 chr5A 79.634 383 63 14 3622 3999 479655427 479655055 1.140000e-65 261.0
4 TraesCS5A01G529000 chr5A 82.222 270 27 9 3243 3501 688285319 688285060 3.230000e-51 213.0
5 TraesCS5A01G529000 chr5A 90.299 134 12 1 3014 3146 688285451 688285318 1.520000e-39 174.0
6 TraesCS5A01G529000 chr4B 87.926 1615 122 30 1571 3150 650666974 650665398 0.000000e+00 1834.0
7 TraesCS5A01G529000 chr4B 82.410 921 104 28 1623 2522 649585554 649584671 0.000000e+00 750.0
8 TraesCS5A01G529000 chr4B 84.436 514 51 17 2656 3141 649584352 649583840 2.890000e-131 479.0
9 TraesCS5A01G529000 chr4B 88.679 265 20 7 3241 3502 650665402 650665145 8.610000e-82 315.0
10 TraesCS5A01G529000 chr4B 88.596 114 12 1 3134 3246 67855703 67855590 2.000000e-28 137.0
11 TraesCS5A01G529000 chr4D 90.528 1098 85 9 1398 2486 504081768 504080681 0.000000e+00 1434.0
12 TraesCS5A01G529000 chr4D 83.333 1014 112 25 1623 2615 503793256 503792279 0.000000e+00 883.0
13 TraesCS5A01G529000 chr4D 91.016 512 29 6 2656 3150 504080391 504079880 0.000000e+00 675.0
14 TraesCS5A01G529000 chr4D 84.913 517 44 9 2656 3141 503792201 503791688 3.710000e-135 492.0
15 TraesCS5A01G529000 chr4D 95.062 162 7 1 3241 3401 504079884 504079723 1.900000e-63 254.0
16 TraesCS5A01G529000 chr4D 95.789 95 4 0 3407 3501 504079667 504079573 1.990000e-33 154.0
17 TraesCS5A01G529000 chr4D 94.737 57 2 1 2605 2660 504080424 504080368 2.040000e-13 87.9
18 TraesCS5A01G529000 chr2B 98.462 715 10 1 1 714 16285815 16285101 0.000000e+00 1258.0
19 TraesCS5A01G529000 chr2B 96.759 648 19 2 712 1359 16285148 16284503 0.000000e+00 1079.0
20 TraesCS5A01G529000 chr2B 98.990 495 5 0 1 495 16286745 16286251 0.000000e+00 887.0
21 TraesCS5A01G529000 chr2B 82.262 451 71 4 3622 4069 496497056 496496612 8.370000e-102 381.0
22 TraesCS5A01G529000 chr2B 92.784 97 7 0 3148 3244 6316507 6316411 1.550000e-29 141.0
23 TraesCS5A01G529000 chr6A 97.479 714 13 1 1 714 249213363 249214071 0.000000e+00 1214.0
24 TraesCS5A01G529000 chr6A 94.223 502 12 4 870 1371 249214388 249214872 0.000000e+00 750.0
25 TraesCS5A01G529000 chr6A 83.801 463 51 11 3668 4127 47698878 47698437 6.380000e-113 418.0
26 TraesCS5A01G529000 chr6A 97.143 140 3 1 712 851 249214024 249214162 6.900000e-58 235.0
27 TraesCS5A01G529000 chr1A 97.063 715 15 2 1 714 223815494 223814785 0.000000e+00 1199.0
28 TraesCS5A01G529000 chr1A 93.373 498 17 4 870 1367 223814572 223814091 0.000000e+00 723.0
29 TraesCS5A01G529000 chr1A 91.061 179 10 5 712 886 223814832 223814656 1.920000e-58 237.0
30 TraesCS5A01G529000 chr3A 95.879 728 16 2 1 714 737410049 737409322 0.000000e+00 1166.0
31 TraesCS5A01G529000 chr3A 96.016 502 19 1 870 1371 737408996 737408496 0.000000e+00 815.0
32 TraesCS5A01G529000 chr3A 96.894 161 4 1 712 872 737409369 737409210 6.800000e-68 268.0
33 TraesCS5A01G529000 chr3A 92.929 99 7 0 3148 3246 432857524 432857426 1.200000e-30 145.0
34 TraesCS5A01G529000 chr7A 95.873 727 16 2 1 714 37010825 37010100 0.000000e+00 1164.0
35 TraesCS5A01G529000 chr7A 91.200 500 11 5 870 1367 37009824 37009356 0.000000e+00 649.0
36 TraesCS5A01G529000 chr7A 96.894 161 3 2 712 872 37010146 37009988 6.800000e-68 268.0
37 TraesCS5A01G529000 chr6B 95.748 729 15 3 1 714 430540777 430541504 0.000000e+00 1160.0
38 TraesCS5A01G529000 chr6B 94.779 498 10 1 870 1367 430541869 430542350 0.000000e+00 761.0
39 TraesCS5A01G529000 chr6B 79.747 395 75 5 3670 4063 654581288 654581678 8.730000e-72 281.0
40 TraesCS5A01G529000 chr6B 97.516 161 3 1 712 872 430541457 430541616 1.460000e-69 274.0
41 TraesCS5A01G529000 chr6B 95.327 107 5 0 1261 1367 430542827 430542933 1.970000e-38 171.0
42 TraesCS5A01G529000 chr6B 91.919 99 8 0 3146 3244 480706994 480707092 5.560000e-29 139.0
43 TraesCS5A01G529000 chr2A 95.598 727 19 1 1 714 479836162 479836888 0.000000e+00 1153.0
44 TraesCS5A01G529000 chr2A 93.700 746 14 4 1 714 24975196 24974452 0.000000e+00 1086.0
45 TraesCS5A01G529000 chr2A 97.610 502 8 3 870 1369 479837748 479838247 0.000000e+00 857.0
46 TraesCS5A01G529000 chr2A 95.538 493 12 1 875 1367 279473619 279474101 0.000000e+00 780.0
47 TraesCS5A01G529000 chr2A 94.004 517 15 4 870 1371 24974262 24973747 0.000000e+00 769.0
48 TraesCS5A01G529000 chr2A 87.500 248 27 4 470 714 334302478 334302724 2.430000e-72 283.0
49 TraesCS5A01G529000 chr2A 78.541 466 65 22 3670 4124 208563042 208563483 1.460000e-69 274.0
50 TraesCS5A01G529000 chr2A 97.516 161 3 1 712 872 479836841 479837000 1.460000e-69 274.0
51 TraesCS5A01G529000 chr2A 97.516 161 3 1 712 872 479837327 479837486 1.460000e-69 274.0
52 TraesCS5A01G529000 chr2A 99.083 109 1 0 606 714 479837266 479837374 3.250000e-46 196.0
53 TraesCS5A01G529000 chr2A 98.765 81 1 0 712 792 24974499 24974419 1.200000e-30 145.0
54 TraesCS5A01G529000 chr2A 92.784 97 7 0 3148 3244 775020291 775020195 1.550000e-29 141.0
55 TraesCS5A01G529000 chr7B 92.545 389 21 6 870 1256 729817847 729818229 6.030000e-153 551.0
56 TraesCS5A01G529000 chr7B 91.837 98 8 0 3147 3244 744201392 744201295 2.000000e-28 137.0
57 TraesCS5A01G529000 chr3D 81.287 513 74 17 3622 4127 31445605 31445108 2.990000e-106 396.0
58 TraesCS5A01G529000 chr3D 77.903 534 77 25 3622 4127 5355400 5355920 1.120000e-75 294.0
59 TraesCS5A01G529000 chr3D 93.000 100 7 0 3145 3244 382104930 382104831 3.320000e-31 147.0
60 TraesCS5A01G529000 chr7D 80.682 528 74 16 3622 4127 141228235 141228756 6.470000e-103 385.0
61 TraesCS5A01G529000 chr7D 80.374 535 65 18 3618 4127 422871712 422871193 1.810000e-98 370.0
62 TraesCS5A01G529000 chr7D 79.345 397 75 7 3618 4012 98036111 98036502 5.260000e-69 272.0
63 TraesCS5A01G529000 chrUn 80.171 469 79 12 3622 4083 342012555 342012094 5.110000e-89 339.0
64 TraesCS5A01G529000 chr3B 80.543 442 75 9 3631 4066 697947892 697947456 3.080000e-86 329.0
65 TraesCS5A01G529000 chr5B 92.000 100 8 0 3148 3247 461613776 461613677 1.550000e-29 141.0
66 TraesCS5A01G529000 chr4A 90.385 104 10 0 3146 3249 417633664 417633561 2.000000e-28 137.0
67 TraesCS5A01G529000 chr2D 90.411 73 4 2 4055 4125 194049131 194049060 4.390000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G529000 chr5A 688733682 688737808 4126 True 7622.000000 7622 100.000000 1 4127 1 chr5A.!!$R2 4126
1 TraesCS5A01G529000 chr5A 688300996 688302711 1715 True 755.500000 1014 84.277000 1485 3141 2 chr5A.!!$R4 1656
2 TraesCS5A01G529000 chr4B 650665145 650666974 1829 True 1074.500000 1834 88.302500 1571 3502 2 chr4B.!!$R3 1931
3 TraesCS5A01G529000 chr4B 649583840 649585554 1714 True 614.500000 750 83.423000 1623 3141 2 chr4B.!!$R2 1518
4 TraesCS5A01G529000 chr4D 503791688 503793256 1568 True 687.500000 883 84.123000 1623 3141 2 chr4D.!!$R1 1518
5 TraesCS5A01G529000 chr4D 504079573 504081768 2195 True 520.980000 1434 93.426400 1398 3501 5 chr4D.!!$R2 2103
6 TraesCS5A01G529000 chr2B 16284503 16286745 2242 True 1074.666667 1258 98.070333 1 1359 3 chr2B.!!$R3 1358
7 TraesCS5A01G529000 chr6A 249213363 249214872 1509 False 733.000000 1214 96.281667 1 1371 3 chr6A.!!$F1 1370
8 TraesCS5A01G529000 chr1A 223814091 223815494 1403 True 719.666667 1199 93.832333 1 1367 3 chr1A.!!$R1 1366
9 TraesCS5A01G529000 chr3A 737408496 737410049 1553 True 749.666667 1166 96.263000 1 1371 3 chr3A.!!$R2 1370
10 TraesCS5A01G529000 chr7A 37009356 37010825 1469 True 693.666667 1164 94.655667 1 1367 3 chr7A.!!$R1 1366
11 TraesCS5A01G529000 chr6B 430540777 430542933 2156 False 591.500000 1160 95.842500 1 1367 4 chr6B.!!$F3 1366
12 TraesCS5A01G529000 chr2A 24973747 24975196 1449 True 666.666667 1086 95.489667 1 1371 3 chr2A.!!$R2 1370
13 TraesCS5A01G529000 chr2A 479836162 479838247 2085 False 550.800000 1153 97.464600 1 1369 5 chr2A.!!$F4 1368
14 TraesCS5A01G529000 chr3D 5355400 5355920 520 False 294.000000 294 77.903000 3622 4127 1 chr3D.!!$F1 505
15 TraesCS5A01G529000 chr7D 141228235 141228756 521 False 385.000000 385 80.682000 3622 4127 1 chr7D.!!$F2 505
16 TraesCS5A01G529000 chr7D 422871193 422871712 519 True 370.000000 370 80.374000 3618 4127 1 chr7D.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.898326 GGTTGATTTCCCAGGCCGTT 60.898 55.000 0.0 0.0 0.0 4.44 F
714 2167 1.066454 TGTATGTGTCGTAGCCGATGG 59.934 52.381 0.0 0.0 46.3 3.51 F
2047 4481 0.107654 GCTTCCACTAATCCCGTGCT 60.108 55.000 0.0 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 3887 0.034337 GCCAGTGACAGTTAACGGGA 59.966 55.0 10.55 0.0 33.96 5.14 R
2387 4844 0.391228 TCCACTACGCAGAGCACAAA 59.609 50.0 0.00 0.0 0.00 2.83 R
3501 6345 0.038166 GAGGGATTGTGAGTGCCCAA 59.962 55.0 0.00 0.0 43.20 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.898326 GGTTGATTTCCCAGGCCGTT 60.898 55.000 0.00 0.00 0.00 4.44
264 266 1.542547 GGTTGAAAAGGAGCGAGGTGA 60.543 52.381 0.00 0.00 0.00 4.02
712 2165 3.067601 TGAATGTATGTGTCGTAGCCGAT 59.932 43.478 0.00 0.00 46.30 4.18
713 2166 2.485266 TGTATGTGTCGTAGCCGATG 57.515 50.000 0.00 0.00 46.30 3.84
714 2167 1.066454 TGTATGTGTCGTAGCCGATGG 59.934 52.381 0.00 0.00 46.30 3.51
736 2189 2.561569 CCCGTTGGGCTATAAAGACTG 58.438 52.381 0.00 0.00 35.35 3.51
737 2190 2.169769 CCCGTTGGGCTATAAAGACTGA 59.830 50.000 0.00 0.00 35.35 3.41
738 2191 3.370103 CCCGTTGGGCTATAAAGACTGAA 60.370 47.826 0.00 0.00 35.35 3.02
739 2192 4.451900 CCGTTGGGCTATAAAGACTGAAT 58.548 43.478 0.00 0.00 0.00 2.57
740 2193 4.273480 CCGTTGGGCTATAAAGACTGAATG 59.727 45.833 0.00 0.00 0.00 2.67
741 2194 4.876107 CGTTGGGCTATAAAGACTGAATGT 59.124 41.667 0.00 0.00 0.00 2.71
742 2195 6.046593 CGTTGGGCTATAAAGACTGAATGTA 58.953 40.000 0.00 0.00 0.00 2.29
743 2196 6.706270 CGTTGGGCTATAAAGACTGAATGTAT 59.294 38.462 0.00 0.00 0.00 2.29
744 2197 7.307396 CGTTGGGCTATAAAGACTGAATGTATG 60.307 40.741 0.00 0.00 0.00 2.39
745 2198 7.136822 TGGGCTATAAAGACTGAATGTATGT 57.863 36.000 0.00 0.00 0.00 2.29
746 2199 6.992123 TGGGCTATAAAGACTGAATGTATGTG 59.008 38.462 0.00 0.00 0.00 3.21
747 2200 6.992715 GGGCTATAAAGACTGAATGTATGTGT 59.007 38.462 0.00 0.00 0.00 3.72
748 2201 7.171678 GGGCTATAAAGACTGAATGTATGTGTC 59.828 40.741 0.00 0.00 0.00 3.67
749 2202 7.710907 GGCTATAAAGACTGAATGTATGTGTCA 59.289 37.037 0.00 0.00 0.00 3.58
797 2250 6.799925 CACAATAAAATTGTAGACCGAACACC 59.200 38.462 5.04 0.00 0.00 4.16
1116 2906 1.078497 CAGCTCGGCCCATGTGTTA 60.078 57.895 0.00 0.00 0.00 2.41
1175 2965 1.475682 GCAAGCTAGCTGAATTGGCTT 59.524 47.619 20.16 0.00 42.85 4.35
1184 2974 3.360956 GAATTGGCTTGGGGCGCTG 62.361 63.158 7.64 0.00 42.94 5.18
1373 3777 9.674068 GCTTTATTATTAGGGAGAGAAATAGGG 57.326 37.037 0.00 0.00 0.00 3.53
1379 3783 9.562226 TTATTAGGGAGAGAAATAGGGATTAGG 57.438 37.037 0.00 0.00 0.00 2.69
1380 3784 4.769050 AGGGAGAGAAATAGGGATTAGGG 58.231 47.826 0.00 0.00 0.00 3.53
1381 3785 4.427406 AGGGAGAGAAATAGGGATTAGGGA 59.573 45.833 0.00 0.00 0.00 4.20
1382 3786 5.080002 AGGGAGAGAAATAGGGATTAGGGAT 59.920 44.000 0.00 0.00 0.00 3.85
1383 3787 6.283084 AGGGAGAGAAATAGGGATTAGGGATA 59.717 42.308 0.00 0.00 0.00 2.59
1384 3788 6.613679 GGGAGAGAAATAGGGATTAGGGATAG 59.386 46.154 0.00 0.00 0.00 2.08
1385 3789 7.423341 GGAGAGAAATAGGGATTAGGGATAGA 58.577 42.308 0.00 0.00 0.00 1.98
1386 3790 7.901861 GGAGAGAAATAGGGATTAGGGATAGAA 59.098 40.741 0.00 0.00 0.00 2.10
1387 3791 8.909423 AGAGAAATAGGGATTAGGGATAGAAG 57.091 38.462 0.00 0.00 0.00 2.85
1388 3792 7.904022 AGAGAAATAGGGATTAGGGATAGAAGG 59.096 40.741 0.00 0.00 0.00 3.46
1389 3793 6.968845 AGAAATAGGGATTAGGGATAGAAGGG 59.031 42.308 0.00 0.00 0.00 3.95
1390 3794 6.515763 AATAGGGATTAGGGATAGAAGGGA 57.484 41.667 0.00 0.00 0.00 4.20
1391 3795 6.715353 ATAGGGATTAGGGATAGAAGGGAT 57.285 41.667 0.00 0.00 0.00 3.85
1392 3796 7.821713 ATAGGGATTAGGGATAGAAGGGATA 57.178 40.000 0.00 0.00 0.00 2.59
1393 3797 6.111564 AGGGATTAGGGATAGAAGGGATAG 57.888 45.833 0.00 0.00 0.00 2.08
1394 3798 5.809252 AGGGATTAGGGATAGAAGGGATAGA 59.191 44.000 0.00 0.00 0.00 1.98
1395 3799 6.460026 AGGGATTAGGGATAGAAGGGATAGAT 59.540 42.308 0.00 0.00 0.00 1.98
1396 3800 7.033972 AGGGATTAGGGATAGAAGGGATAGATT 60.034 40.741 0.00 0.00 0.00 2.40
1406 3810 5.158889 AGAAGGGATAGATTGGGTTAGGAG 58.841 45.833 0.00 0.00 0.00 3.69
1687 4097 1.760086 CTCTCGAGCCCATGGAGGT 60.760 63.158 15.22 9.13 34.67 3.85
1787 4208 2.778717 CCCCTCCCCATCCCCTTC 60.779 72.222 0.00 0.00 0.00 3.46
1791 4212 1.010795 CCTCCCCATCCCCTTCTTTT 58.989 55.000 0.00 0.00 0.00 2.27
1896 4325 3.884774 TGTTCAGGTGCCGGCCTT 61.885 61.111 26.77 9.05 36.58 4.35
2047 4481 0.107654 GCTTCCACTAATCCCGTGCT 60.108 55.000 0.00 0.00 0.00 4.40
2186 4637 2.700897 CGAGGTAGGGGATGTGAAGAAT 59.299 50.000 0.00 0.00 0.00 2.40
2216 4667 3.666883 TGCGTATCACCATTTTAAGCG 57.333 42.857 0.00 0.00 0.00 4.68
2235 4692 1.140816 GTCACAAGTGCCGAGTTCTC 58.859 55.000 0.00 0.00 0.00 2.87
2298 4755 4.204012 GGTATTTCACCGATTCATGGGAA 58.796 43.478 0.00 0.00 37.63 3.97
2316 4773 2.538939 GGAACAATTTCGTATCAGCGGC 60.539 50.000 0.00 0.00 31.78 6.53
2341 4798 4.835056 TCATAGATGTGATCGATGGTTCCT 59.165 41.667 0.54 0.00 41.11 3.36
2418 4881 1.066858 CGTAGTGGAGGTGTCTTGCAT 60.067 52.381 0.00 0.00 0.00 3.96
2425 4888 4.641989 GTGGAGGTGTCTTGCATATGAAAT 59.358 41.667 6.97 0.00 0.00 2.17
2495 5035 7.750769 ACTGTTCTAGTAGCTAGTTTACTTCG 58.249 38.462 6.36 6.73 38.04 3.79
2514 5055 5.010314 ACTTCGGTATAGTTTCTCACACACA 59.990 40.000 0.00 0.00 0.00 3.72
2532 5073 4.703575 CACACAGGGTTTGATCATCTCATT 59.296 41.667 0.00 0.00 32.72 2.57
2638 5394 6.362551 CAGCTGCATTCATTGATATTAAGTGC 59.637 38.462 0.00 0.00 0.00 4.40
2639 5395 6.264744 AGCTGCATTCATTGATATTAAGTGCT 59.735 34.615 1.02 0.00 0.00 4.40
2640 5396 6.581542 GCTGCATTCATTGATATTAAGTGCTC 59.418 38.462 0.00 0.00 0.00 4.26
2641 5397 7.521748 GCTGCATTCATTGATATTAAGTGCTCT 60.522 37.037 0.00 0.00 0.00 4.09
2642 5398 8.229253 TGCATTCATTGATATTAAGTGCTCTT 57.771 30.769 6.25 6.25 37.65 2.85
2643 5399 8.689061 TGCATTCATTGATATTAAGTGCTCTTT 58.311 29.630 6.31 0.00 35.36 2.52
2644 5400 9.525409 GCATTCATTGATATTAAGTGCTCTTTT 57.475 29.630 6.31 0.00 35.36 2.27
2884 5641 8.662255 TGATCCAGAAAAGGTTAGGTTAAGTTA 58.338 33.333 0.00 0.00 0.00 2.24
2910 5683 3.000684 TCGCTATATCGGTATCTGCCT 57.999 47.619 0.00 0.00 0.00 4.75
2961 5751 9.964354 TTATACTTATTGCAGATTCATATGCCT 57.036 29.630 4.02 0.00 43.92 4.75
2992 5783 7.803189 CGTGTTGCTTAATACTGTTGATTTTCT 59.197 33.333 0.00 0.00 0.00 2.52
3142 5934 8.387813 AGAGGGTGAACATAAAGGTGTTATTAA 58.612 33.333 0.00 0.00 42.08 1.40
3145 5937 9.452287 GGGTGAACATAAAGGTGTTATTAACTA 57.548 33.333 7.99 0.00 42.08 2.24
3156 5948 8.750515 AGGTGTTATTAACTAGTACTCTCTCC 57.249 38.462 0.00 0.00 0.00 3.71
3157 5949 7.498570 AGGTGTTATTAACTAGTACTCTCTCCG 59.501 40.741 0.00 0.00 0.00 4.63
3158 5950 7.281999 GGTGTTATTAACTAGTACTCTCTCCGT 59.718 40.741 0.00 0.00 0.00 4.69
3159 5951 8.672815 GTGTTATTAACTAGTACTCTCTCCGTT 58.327 37.037 0.00 0.00 0.00 4.44
3160 5952 8.887717 TGTTATTAACTAGTACTCTCTCCGTTC 58.112 37.037 0.00 0.00 0.00 3.95
3161 5953 9.108284 GTTATTAACTAGTACTCTCTCCGTTCT 57.892 37.037 0.00 0.00 0.00 3.01
3164 5956 9.678260 ATTAACTAGTACTCTCTCCGTTCTAAA 57.322 33.333 0.00 0.00 0.00 1.85
3165 5957 7.992754 AACTAGTACTCTCTCCGTTCTAAAA 57.007 36.000 0.00 0.00 0.00 1.52
3166 5958 8.578448 AACTAGTACTCTCTCCGTTCTAAAAT 57.422 34.615 0.00 0.00 0.00 1.82
3167 5959 9.678260 AACTAGTACTCTCTCCGTTCTAAAATA 57.322 33.333 0.00 0.00 0.00 1.40
3168 5960 9.328845 ACTAGTACTCTCTCCGTTCTAAAATAG 57.671 37.037 0.00 0.00 0.00 1.73
3169 5961 9.545105 CTAGTACTCTCTCCGTTCTAAAATAGA 57.455 37.037 0.00 0.00 0.00 1.98
3170 5962 8.983702 AGTACTCTCTCCGTTCTAAAATAGAT 57.016 34.615 0.00 0.00 34.22 1.98
3171 5963 8.842280 AGTACTCTCTCCGTTCTAAAATAGATG 58.158 37.037 0.00 0.00 34.22 2.90
3172 5964 7.883391 ACTCTCTCCGTTCTAAAATAGATGA 57.117 36.000 0.00 0.00 34.22 2.92
3173 5965 7.708998 ACTCTCTCCGTTCTAAAATAGATGAC 58.291 38.462 0.00 0.00 34.22 3.06
3174 5966 7.040473 TCTCTCCGTTCTAAAATAGATGACC 57.960 40.000 0.00 0.00 34.22 4.02
3175 5967 6.040616 TCTCTCCGTTCTAAAATAGATGACCC 59.959 42.308 0.00 0.00 34.22 4.46
3176 5968 5.659525 TCTCCGTTCTAAAATAGATGACCCA 59.340 40.000 0.00 0.00 34.22 4.51
3177 5969 6.155565 TCTCCGTTCTAAAATAGATGACCCAA 59.844 38.462 0.00 0.00 34.22 4.12
3178 5970 6.895782 TCCGTTCTAAAATAGATGACCCAAT 58.104 36.000 0.00 0.00 34.22 3.16
3179 5971 7.343357 TCCGTTCTAAAATAGATGACCCAATT 58.657 34.615 0.00 0.00 34.22 2.32
3180 5972 7.832187 TCCGTTCTAAAATAGATGACCCAATTT 59.168 33.333 0.00 0.00 34.22 1.82
3181 5973 8.466798 CCGTTCTAAAATAGATGACCCAATTTT 58.533 33.333 0.00 0.00 36.04 1.82
3190 5982 9.936329 AATAGATGACCCAATTTTATACCAACT 57.064 29.630 0.00 0.00 0.00 3.16
3191 5983 9.936329 ATAGATGACCCAATTTTATACCAACTT 57.064 29.630 0.00 0.00 0.00 2.66
3192 5984 8.664669 AGATGACCCAATTTTATACCAACTTT 57.335 30.769 0.00 0.00 0.00 2.66
3193 5985 8.531146 AGATGACCCAATTTTATACCAACTTTG 58.469 33.333 0.00 0.00 0.00 2.77
3194 5986 7.604657 TGACCCAATTTTATACCAACTTTGT 57.395 32.000 0.00 0.00 0.00 2.83
3195 5987 8.707796 TGACCCAATTTTATACCAACTTTGTA 57.292 30.769 0.00 0.00 0.00 2.41
3196 5988 8.578151 TGACCCAATTTTATACCAACTTTGTAC 58.422 33.333 0.00 0.00 0.00 2.90
3197 5989 8.715190 ACCCAATTTTATACCAACTTTGTACT 57.285 30.769 0.00 0.00 0.00 2.73
3198 5990 9.810870 ACCCAATTTTATACCAACTTTGTACTA 57.189 29.630 0.00 0.00 0.00 1.82
3230 6022 9.965824 AGTACAAAATTAAGTCATCTGTTTTGG 57.034 29.630 11.54 0.00 36.63 3.28
3231 6023 9.959749 GTACAAAATTAAGTCATCTGTTTTGGA 57.040 29.630 11.54 2.16 36.63 3.53
3233 6025 9.313118 ACAAAATTAAGTCATCTGTTTTGGAAC 57.687 29.630 11.54 0.00 36.63 3.62
3234 6026 9.311916 CAAAATTAAGTCATCTGTTTTGGAACA 57.688 29.630 0.00 0.00 43.23 3.18
3311 6104 9.520515 TTCATTCCTCAATATATTTTCTAGCCC 57.479 33.333 0.00 0.00 0.00 5.19
3312 6105 8.668653 TCATTCCTCAATATATTTTCTAGCCCA 58.331 33.333 0.00 0.00 0.00 5.36
3361 6154 5.104527 CCCATGGATTACTTGTACTGGAGAA 60.105 44.000 15.22 0.00 0.00 2.87
3371 6164 4.193826 TGTACTGGAGAATTGAGCTGTC 57.806 45.455 0.00 0.00 0.00 3.51
3409 6206 1.204941 AGTCCTCTGTGAACATACCGC 59.795 52.381 0.00 0.00 0.00 5.68
3476 6320 7.477144 TTCTACATTTATGGCTGTGATTACG 57.523 36.000 0.00 0.00 0.00 3.18
3501 6345 7.114953 CGATAATATCACGCACACAAACTAGAT 59.885 37.037 0.00 0.00 0.00 1.98
3503 6347 4.668576 ATCACGCACACAAACTAGATTG 57.331 40.909 10.91 10.91 36.37 2.67
3504 6348 2.805671 TCACGCACACAAACTAGATTGG 59.194 45.455 16.16 8.26 34.56 3.16
3505 6349 2.095768 CACGCACACAAACTAGATTGGG 60.096 50.000 13.04 13.04 39.65 4.12
3506 6350 1.135689 CGCACACAAACTAGATTGGGC 60.136 52.381 14.40 13.51 37.20 5.36
3507 6351 1.885887 GCACACAAACTAGATTGGGCA 59.114 47.619 14.40 0.00 37.20 5.36
3508 6352 2.351738 GCACACAAACTAGATTGGGCAC 60.352 50.000 14.40 3.78 37.20 5.01
3509 6353 3.149196 CACACAAACTAGATTGGGCACT 58.851 45.455 14.40 0.00 37.20 4.40
3510 6354 3.189287 CACACAAACTAGATTGGGCACTC 59.811 47.826 14.40 0.00 37.20 3.51
3511 6355 3.181445 ACACAAACTAGATTGGGCACTCA 60.181 43.478 14.40 0.00 37.20 3.41
3512 6356 3.189287 CACAAACTAGATTGGGCACTCAC 59.811 47.826 16.16 0.00 34.56 3.51
3513 6357 3.181445 ACAAACTAGATTGGGCACTCACA 60.181 43.478 16.16 0.00 34.56 3.58
3514 6358 3.788227 AACTAGATTGGGCACTCACAA 57.212 42.857 0.00 0.00 0.00 3.33
3515 6359 4.307032 AACTAGATTGGGCACTCACAAT 57.693 40.909 0.00 0.00 39.81 2.71
3518 6362 1.106285 GATTGGGCACTCACAATCCC 58.894 55.000 8.63 0.00 44.38 3.85
3519 6363 0.706433 ATTGGGCACTCACAATCCCT 59.294 50.000 0.00 0.00 39.49 4.20
3520 6364 0.038166 TTGGGCACTCACAATCCCTC 59.962 55.000 0.00 0.00 39.49 4.30
3521 6365 0.842030 TGGGCACTCACAATCCCTCT 60.842 55.000 0.00 0.00 39.49 3.69
3522 6366 0.329596 GGGCACTCACAATCCCTCTT 59.670 55.000 0.00 0.00 35.87 2.85
3523 6367 1.457346 GGCACTCACAATCCCTCTTG 58.543 55.000 0.00 0.00 0.00 3.02
3524 6368 1.003580 GGCACTCACAATCCCTCTTGA 59.996 52.381 0.00 0.00 0.00 3.02
3525 6369 2.356535 GGCACTCACAATCCCTCTTGAT 60.357 50.000 0.00 0.00 0.00 2.57
3526 6370 2.681848 GCACTCACAATCCCTCTTGATG 59.318 50.000 0.00 0.00 0.00 3.07
3527 6371 3.871463 GCACTCACAATCCCTCTTGATGT 60.871 47.826 0.00 0.00 0.00 3.06
3528 6372 3.688185 CACTCACAATCCCTCTTGATGTG 59.312 47.826 0.00 0.00 0.00 3.21
3529 6373 3.584406 ACTCACAATCCCTCTTGATGTGA 59.416 43.478 6.71 6.71 34.57 3.58
3530 6374 3.937706 CTCACAATCCCTCTTGATGTGAC 59.062 47.826 3.01 0.00 33.41 3.67
3531 6375 2.674852 CACAATCCCTCTTGATGTGACG 59.325 50.000 0.00 0.00 31.32 4.35
3532 6376 2.303022 ACAATCCCTCTTGATGTGACGT 59.697 45.455 0.00 0.00 0.00 4.34
3533 6377 2.674852 CAATCCCTCTTGATGTGACGTG 59.325 50.000 0.00 0.00 0.00 4.49
3534 6378 1.627864 TCCCTCTTGATGTGACGTGA 58.372 50.000 0.00 0.00 0.00 4.35
3535 6379 1.272490 TCCCTCTTGATGTGACGTGAC 59.728 52.381 0.00 0.00 0.00 3.67
3536 6380 1.673033 CCCTCTTGATGTGACGTGACC 60.673 57.143 1.78 0.00 0.00 4.02
3537 6381 1.273606 CCTCTTGATGTGACGTGACCT 59.726 52.381 1.78 0.00 0.00 3.85
3538 6382 2.289072 CCTCTTGATGTGACGTGACCTT 60.289 50.000 1.78 0.00 0.00 3.50
3539 6383 2.733552 CTCTTGATGTGACGTGACCTTG 59.266 50.000 1.78 0.00 0.00 3.61
3540 6384 1.800586 CTTGATGTGACGTGACCTTGG 59.199 52.381 1.78 0.00 0.00 3.61
3541 6385 0.756294 TGATGTGACGTGACCTTGGT 59.244 50.000 1.78 0.00 0.00 3.67
3542 6386 1.148310 GATGTGACGTGACCTTGGTG 58.852 55.000 1.78 0.00 0.00 4.17
3543 6387 0.250295 ATGTGACGTGACCTTGGTGG 60.250 55.000 1.78 0.00 42.93 4.61
3544 6388 1.597027 GTGACGTGACCTTGGTGGG 60.597 63.158 0.00 0.00 41.11 4.61
3545 6389 2.067605 TGACGTGACCTTGGTGGGT 61.068 57.895 0.00 0.00 43.07 4.51
3546 6390 1.147600 GACGTGACCTTGGTGGGTT 59.852 57.895 0.00 0.00 40.06 4.11
3547 6391 0.883370 GACGTGACCTTGGTGGGTTC 60.883 60.000 0.00 0.00 40.06 3.62
3548 6392 1.599797 CGTGACCTTGGTGGGTTCC 60.600 63.158 0.00 0.00 40.06 3.62
3549 6393 1.534697 GTGACCTTGGTGGGTTCCA 59.465 57.895 0.00 0.00 40.06 3.53
3550 6394 0.112412 GTGACCTTGGTGGGTTCCAT 59.888 55.000 0.00 0.00 40.06 3.41
3551 6395 0.112218 TGACCTTGGTGGGTTCCATG 59.888 55.000 0.00 0.00 40.06 3.66
3552 6396 1.228862 ACCTTGGTGGGTTCCATGC 60.229 57.895 0.00 0.00 41.11 4.06
3553 6397 1.984026 CCTTGGTGGGTTCCATGCC 60.984 63.158 0.00 0.00 37.33 4.40
3554 6398 1.228831 CTTGGTGGGTTCCATGCCA 60.229 57.895 0.00 0.00 37.33 4.92
3555 6399 0.615544 CTTGGTGGGTTCCATGCCAT 60.616 55.000 0.00 0.00 37.33 4.40
3556 6400 0.903924 TTGGTGGGTTCCATGCCATG 60.904 55.000 0.00 0.00 37.33 3.66
3557 6401 1.305213 GGTGGGTTCCATGCCATGT 60.305 57.895 3.63 0.00 35.28 3.21
3558 6402 1.322538 GGTGGGTTCCATGCCATGTC 61.323 60.000 3.63 0.00 35.28 3.06
3559 6403 0.611618 GTGGGTTCCATGCCATGTCA 60.612 55.000 3.63 0.00 35.28 3.58
3560 6404 0.323633 TGGGTTCCATGCCATGTCAG 60.324 55.000 3.63 0.00 0.00 3.51
3561 6405 1.669999 GGGTTCCATGCCATGTCAGC 61.670 60.000 3.63 0.00 0.00 4.26
3562 6406 0.966875 GGTTCCATGCCATGTCAGCA 60.967 55.000 3.63 0.00 45.94 4.41
3576 6420 2.565046 TCAGCATGTCATGTTGACCA 57.435 45.000 23.78 6.82 46.40 4.02
3577 6421 3.076079 TCAGCATGTCATGTTGACCAT 57.924 42.857 23.78 0.00 46.40 3.55
3578 6422 3.011818 TCAGCATGTCATGTTGACCATC 58.988 45.455 23.78 2.12 46.40 3.51
3579 6423 2.750712 CAGCATGTCATGTTGACCATCA 59.249 45.455 21.46 0.00 46.40 3.07
3580 6424 3.014623 AGCATGTCATGTTGACCATCAG 58.985 45.455 14.26 0.00 46.40 2.90
3581 6425 2.098607 GCATGTCATGTTGACCATCAGG 59.901 50.000 14.26 0.00 46.40 3.86
3592 6436 3.558674 CCATCAGGTCAAGGACACC 57.441 57.895 0.00 0.00 33.68 4.16
3593 6437 0.692476 CCATCAGGTCAAGGACACCA 59.308 55.000 0.00 0.00 36.23 4.17
3594 6438 1.339438 CCATCAGGTCAAGGACACCAG 60.339 57.143 0.00 0.00 36.23 4.00
3595 6439 1.349026 CATCAGGTCAAGGACACCAGT 59.651 52.381 0.00 0.00 36.23 4.00
3596 6440 0.758734 TCAGGTCAAGGACACCAGTG 59.241 55.000 0.00 0.00 36.23 3.66
3598 6442 0.469917 AGGTCAAGGACACCAGTGTG 59.530 55.000 8.43 0.00 45.05 3.82
3608 6452 1.939974 CACCAGTGTGGATATGACCG 58.060 55.000 0.00 0.00 40.96 4.79
3609 6453 0.830648 ACCAGTGTGGATATGACCGG 59.169 55.000 0.00 0.00 40.96 5.28
3610 6454 0.830648 CCAGTGTGGATATGACCGGT 59.169 55.000 6.92 6.92 40.96 5.28
3611 6455 1.209504 CCAGTGTGGATATGACCGGTT 59.790 52.381 9.42 0.00 40.96 4.44
3612 6456 2.355716 CCAGTGTGGATATGACCGGTTT 60.356 50.000 9.42 1.66 40.96 3.27
3613 6457 2.677836 CAGTGTGGATATGACCGGTTTG 59.322 50.000 9.42 0.00 0.00 2.93
3614 6458 1.400494 GTGTGGATATGACCGGTTTGC 59.600 52.381 9.42 0.00 0.00 3.68
3615 6459 0.655733 GTGGATATGACCGGTTTGCG 59.344 55.000 9.42 0.00 0.00 4.85
3616 6460 1.092921 TGGATATGACCGGTTTGCGC 61.093 55.000 9.42 0.00 0.00 6.09
3620 6464 1.017177 TATGACCGGTTTGCGCTGTC 61.017 55.000 9.42 6.40 0.00 3.51
3624 6468 2.034879 CCGGTTTGCGCTGTCAGAT 61.035 57.895 9.73 0.00 0.00 2.90
3629 6473 0.874390 TTTGCGCTGTCAGATCAACC 59.126 50.000 9.73 0.00 0.00 3.77
3657 6501 2.347697 TCGATCCAAACAGACGACAG 57.652 50.000 0.00 0.00 0.00 3.51
3662 6506 4.446385 CGATCCAAACAGACGACAGTTTTA 59.554 41.667 5.74 0.00 34.41 1.52
3665 6509 5.361427 TCCAAACAGACGACAGTTTTATCA 58.639 37.500 5.74 0.00 34.41 2.15
3667 6511 5.236478 CCAAACAGACGACAGTTTTATCAGT 59.764 40.000 5.74 0.00 34.41 3.41
3716 6560 1.073025 ACCAATGTCTGCTTCCGCA 59.927 52.632 0.00 0.00 45.60 5.69
3753 6597 0.108138 GTCCAACGCTAGCATGACCT 60.108 55.000 16.45 0.00 0.00 3.85
3766 6610 7.201609 CGCTAGCATGACCTAATTTTTAGTTCA 60.202 37.037 16.45 0.00 0.00 3.18
3769 6613 6.430000 AGCATGACCTAATTTTTAGTTCACGT 59.570 34.615 0.00 0.00 0.00 4.49
3859 6718 1.215382 CGAGAGTCCATGCGTCCAA 59.785 57.895 0.00 0.00 0.00 3.53
3868 6727 4.104776 GTCCATGCGTCCAAATTACATTG 58.895 43.478 0.00 0.00 0.00 2.82
3870 6729 4.644234 TCCATGCGTCCAAATTACATTGAT 59.356 37.500 0.00 0.00 31.84 2.57
3906 6777 0.828677 ATTAAACTAGGAGGCGGCGT 59.171 50.000 9.37 0.00 0.00 5.68
3908 6779 1.252904 TAAACTAGGAGGCGGCGTGT 61.253 55.000 9.37 0.00 0.00 4.49
3966 6841 4.831307 GTCGATCAGCGTCGGCGT 62.831 66.667 12.58 0.00 46.35 5.68
4012 6887 2.580815 CAGAGCCTGGCGATGTCA 59.419 61.111 13.96 0.00 0.00 3.58
4015 6890 1.047596 AGAGCCTGGCGATGTCATCT 61.048 55.000 13.96 5.76 0.00 2.90
4021 6896 1.144716 GGCGATGTCATCTGCCAGA 59.855 57.895 28.58 0.00 43.53 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
717 2170 3.536956 TCAGTCTTTATAGCCCAACGG 57.463 47.619 0.00 0.00 0.00 4.44
718 2171 4.876107 ACATTCAGTCTTTATAGCCCAACG 59.124 41.667 0.00 0.00 0.00 4.10
719 2172 7.499232 ACATACATTCAGTCTTTATAGCCCAAC 59.501 37.037 0.00 0.00 0.00 3.77
720 2173 7.498900 CACATACATTCAGTCTTTATAGCCCAA 59.501 37.037 0.00 0.00 0.00 4.12
721 2174 6.992123 CACATACATTCAGTCTTTATAGCCCA 59.008 38.462 0.00 0.00 0.00 5.36
722 2175 6.992715 ACACATACATTCAGTCTTTATAGCCC 59.007 38.462 0.00 0.00 0.00 5.19
723 2176 7.710907 TGACACATACATTCAGTCTTTATAGCC 59.289 37.037 0.00 0.00 0.00 3.93
724 2177 8.648557 TGACACATACATTCAGTCTTTATAGC 57.351 34.615 0.00 0.00 0.00 2.97
727 2180 9.265901 GCTATGACACATACATTCAGTCTTTAT 57.734 33.333 0.00 0.00 0.00 1.40
728 2181 7.710907 GGCTATGACACATACATTCAGTCTTTA 59.289 37.037 0.00 0.00 0.00 1.85
729 2182 6.540189 GGCTATGACACATACATTCAGTCTTT 59.460 38.462 0.00 0.00 0.00 2.52
730 2183 6.051717 GGCTATGACACATACATTCAGTCTT 58.948 40.000 0.00 0.00 0.00 3.01
731 2184 5.605534 GGCTATGACACATACATTCAGTCT 58.394 41.667 0.00 0.00 0.00 3.24
732 2185 4.445718 CGGCTATGACACATACATTCAGTC 59.554 45.833 0.00 0.00 0.00 3.51
733 2186 4.099419 TCGGCTATGACACATACATTCAGT 59.901 41.667 0.00 0.00 0.00 3.41
734 2187 4.620982 TCGGCTATGACACATACATTCAG 58.379 43.478 0.00 0.00 0.00 3.02
735 2188 4.664150 TCGGCTATGACACATACATTCA 57.336 40.909 0.00 0.00 0.00 2.57
736 2189 5.230182 TCATCGGCTATGACACATACATTC 58.770 41.667 0.00 0.00 39.77 2.67
737 2190 5.213891 TCATCGGCTATGACACATACATT 57.786 39.130 0.00 0.00 39.77 2.71
738 2191 4.871933 TCATCGGCTATGACACATACAT 57.128 40.909 0.00 0.00 39.77 2.29
739 2192 4.664150 TTCATCGGCTATGACACATACA 57.336 40.909 0.55 0.00 44.42 2.29
740 2193 6.183360 GCTATTTCATCGGCTATGACACATAC 60.183 42.308 0.55 0.00 44.42 2.39
741 2194 5.869344 GCTATTTCATCGGCTATGACACATA 59.131 40.000 0.55 0.00 44.42 2.29
742 2195 4.692625 GCTATTTCATCGGCTATGACACAT 59.307 41.667 0.55 0.00 44.42 3.21
743 2196 4.058124 GCTATTTCATCGGCTATGACACA 58.942 43.478 0.55 0.00 44.42 3.72
744 2197 4.151335 CAGCTATTTCATCGGCTATGACAC 59.849 45.833 0.55 0.00 44.42 3.67
745 2198 4.309933 CAGCTATTTCATCGGCTATGACA 58.690 43.478 0.55 0.00 44.42 3.58
746 2199 3.681897 CCAGCTATTTCATCGGCTATGAC 59.318 47.826 0.55 0.00 44.42 3.06
747 2200 3.578282 TCCAGCTATTTCATCGGCTATGA 59.422 43.478 0.00 0.00 43.03 2.15
748 2201 3.930336 TCCAGCTATTTCATCGGCTATG 58.070 45.455 0.00 0.00 36.88 2.23
749 2202 3.055530 CCTCCAGCTATTTCATCGGCTAT 60.056 47.826 0.00 0.00 33.43 2.97
797 2250 9.503427 GCTAGCTTAAAAACACTAATTACATGG 57.497 33.333 7.70 0.00 0.00 3.66
1184 2974 1.069935 GGTCGCTTGGAGATAGCCC 59.930 63.158 0.00 0.00 35.18 5.19
1250 3056 9.703892 TCTTGAAACAAAAATTCTTGAAACAGA 57.296 25.926 0.00 0.00 0.00 3.41
1371 3775 6.106407 TCTATCCCTTCTATCCCTAATCCC 57.894 45.833 0.00 0.00 0.00 3.85
1372 3776 7.071824 CCAATCTATCCCTTCTATCCCTAATCC 59.928 44.444 0.00 0.00 0.00 3.01
1373 3777 7.071824 CCCAATCTATCCCTTCTATCCCTAATC 59.928 44.444 0.00 0.00 0.00 1.75
1374 3778 6.911424 CCCAATCTATCCCTTCTATCCCTAAT 59.089 42.308 0.00 0.00 0.00 1.73
1375 3779 6.183361 ACCCAATCTATCCCTTCTATCCCTAA 60.183 42.308 0.00 0.00 0.00 2.69
1376 3780 5.321625 ACCCAATCTATCCCTTCTATCCCTA 59.678 44.000 0.00 0.00 0.00 3.53
1377 3781 4.112093 ACCCAATCTATCCCTTCTATCCCT 59.888 45.833 0.00 0.00 0.00 4.20
1378 3782 4.439860 ACCCAATCTATCCCTTCTATCCC 58.560 47.826 0.00 0.00 0.00 3.85
1379 3783 6.157123 CCTAACCCAATCTATCCCTTCTATCC 59.843 46.154 0.00 0.00 0.00 2.59
1380 3784 6.960542 TCCTAACCCAATCTATCCCTTCTATC 59.039 42.308 0.00 0.00 0.00 2.08
1381 3785 6.886637 TCCTAACCCAATCTATCCCTTCTAT 58.113 40.000 0.00 0.00 0.00 1.98
1382 3786 6.303427 TCCTAACCCAATCTATCCCTTCTA 57.697 41.667 0.00 0.00 0.00 2.10
1383 3787 5.158889 CTCCTAACCCAATCTATCCCTTCT 58.841 45.833 0.00 0.00 0.00 2.85
1384 3788 4.263112 GCTCCTAACCCAATCTATCCCTTC 60.263 50.000 0.00 0.00 0.00 3.46
1385 3789 3.653352 GCTCCTAACCCAATCTATCCCTT 59.347 47.826 0.00 0.00 0.00 3.95
1386 3790 3.252351 GCTCCTAACCCAATCTATCCCT 58.748 50.000 0.00 0.00 0.00 4.20
1387 3791 2.028020 CGCTCCTAACCCAATCTATCCC 60.028 54.545 0.00 0.00 0.00 3.85
1388 3792 2.633481 ACGCTCCTAACCCAATCTATCC 59.367 50.000 0.00 0.00 0.00 2.59
1389 3793 3.654414 CACGCTCCTAACCCAATCTATC 58.346 50.000 0.00 0.00 0.00 2.08
1390 3794 2.224305 GCACGCTCCTAACCCAATCTAT 60.224 50.000 0.00 0.00 0.00 1.98
1391 3795 1.138266 GCACGCTCCTAACCCAATCTA 59.862 52.381 0.00 0.00 0.00 1.98
1392 3796 0.107654 GCACGCTCCTAACCCAATCT 60.108 55.000 0.00 0.00 0.00 2.40
1393 3797 1.429148 CGCACGCTCCTAACCCAATC 61.429 60.000 0.00 0.00 0.00 2.67
1394 3798 1.449601 CGCACGCTCCTAACCCAAT 60.450 57.895 0.00 0.00 0.00 3.16
1395 3799 2.047655 CGCACGCTCCTAACCCAA 60.048 61.111 0.00 0.00 0.00 4.12
1396 3800 4.077184 CCGCACGCTCCTAACCCA 62.077 66.667 0.00 0.00 0.00 4.51
1422 3826 2.028839 TCGTACGATTGCAAAGGAGGAA 60.029 45.455 15.28 0.00 0.00 3.36
1425 3829 1.324736 GCTCGTACGATTGCAAAGGAG 59.675 52.381 19.87 8.66 0.00 3.69
1483 3887 0.034337 GCCAGTGACAGTTAACGGGA 59.966 55.000 10.55 0.00 33.96 5.14
1577 3986 0.512518 TGAATGTTCGCTTGACGCTG 59.487 50.000 0.00 0.00 43.23 5.18
1711 4121 2.972505 CTTGAGGTGCGCGTTGGT 60.973 61.111 8.43 0.00 0.00 3.67
1769 4190 4.472310 AAGGGGATGGGGAGGGGG 62.472 72.222 0.00 0.00 0.00 5.40
1787 4208 6.455647 GGTATCAAGTTTTTCTCCCCAAAAG 58.544 40.000 0.00 0.00 0.00 2.27
1791 4212 3.660669 AGGGTATCAAGTTTTTCTCCCCA 59.339 43.478 0.00 0.00 34.74 4.96
1797 4218 5.163923 CGTCCGTTAGGGTATCAAGTTTTTC 60.164 44.000 0.00 0.00 38.33 2.29
2031 4461 2.304761 AGAAAAGCACGGGATTAGTGGA 59.695 45.455 0.00 0.00 39.80 4.02
2033 4463 4.094442 GGTTAGAAAAGCACGGGATTAGTG 59.906 45.833 0.00 0.00 42.15 2.74
2216 4667 1.140816 GAGAACTCGGCACTTGTGAC 58.859 55.000 4.79 0.00 0.00 3.67
2235 4692 2.469274 ATATCAGGCATTCCTCTGCG 57.531 50.000 0.00 0.00 41.93 5.18
2298 4755 1.732941 TGCCGCTGATACGAAATTGT 58.267 45.000 0.00 0.00 34.06 2.71
2316 4773 5.579904 GGAACCATCGATCACATCTATGATG 59.420 44.000 0.00 6.06 39.48 3.07
2341 4798 2.989639 CTTGGCAGGATCGGGACA 59.010 61.111 0.00 0.00 0.00 4.02
2387 4844 0.391228 TCCACTACGCAGAGCACAAA 59.609 50.000 0.00 0.00 0.00 2.83
2495 5035 4.020485 ACCCTGTGTGTGAGAAACTATACC 60.020 45.833 0.00 0.00 0.00 2.73
2514 5055 5.705397 TCTCAATGAGATGATCAAACCCT 57.295 39.130 9.18 0.00 42.53 4.34
2532 5073 6.650427 ACTATGTTAAGCCGTCATATCTCA 57.350 37.500 0.00 0.00 0.00 3.27
2578 5269 4.099881 AGCATCACCAAAAGCTTTGAAAGA 59.900 37.500 13.54 9.53 32.52 2.52
2649 5405 9.927668 CAAAAGGATTATAAAAGAGCAAAAGGA 57.072 29.630 0.00 0.00 0.00 3.36
2650 5406 8.659491 GCAAAAGGATTATAAAAGAGCAAAAGG 58.341 33.333 0.00 0.00 0.00 3.11
2651 5407 9.428097 AGCAAAAGGATTATAAAAGAGCAAAAG 57.572 29.630 0.00 0.00 0.00 2.27
2652 5408 9.423061 GAGCAAAAGGATTATAAAAGAGCAAAA 57.577 29.630 0.00 0.00 0.00 2.44
2653 5409 8.584157 TGAGCAAAAGGATTATAAAAGAGCAAA 58.416 29.630 0.00 0.00 0.00 3.68
2654 5410 8.121305 TGAGCAAAAGGATTATAAAAGAGCAA 57.879 30.769 0.00 0.00 0.00 3.91
2655 5411 7.701539 TGAGCAAAAGGATTATAAAAGAGCA 57.298 32.000 0.00 0.00 0.00 4.26
2656 5412 8.028938 TGTTGAGCAAAAGGATTATAAAAGAGC 58.971 33.333 0.00 0.00 0.00 4.09
2819 5575 1.001641 ATCAACTGGGCCAGCTGAC 60.002 57.895 35.11 2.25 39.01 3.51
2884 5641 6.072397 GGCAGATACCGATATAGCGATAAGAT 60.072 42.308 12.81 0.00 0.00 2.40
2889 5646 3.556999 AGGCAGATACCGATATAGCGAT 58.443 45.455 12.81 0.00 33.69 4.58
2891 5648 3.784701 AAGGCAGATACCGATATAGCG 57.215 47.619 2.75 2.75 33.69 4.26
2892 5649 7.942990 AGTATAAAGGCAGATACCGATATAGC 58.057 38.462 0.00 0.00 33.69 2.97
2961 5751 7.317390 TCAACAGTATTAAGCAACACGATAGA 58.683 34.615 0.00 0.00 41.38 1.98
2992 5783 6.469410 AGGTTCACGTAATCAACCTGAATAA 58.531 36.000 15.83 0.00 46.73 1.40
3142 5934 9.328845 CTATTTTAGAACGGAGAGAGTACTAGT 57.671 37.037 0.00 0.00 0.00 2.57
3145 5937 8.842280 CATCTATTTTAGAACGGAGAGAGTACT 58.158 37.037 0.00 0.00 38.50 2.73
3146 5938 8.838365 TCATCTATTTTAGAACGGAGAGAGTAC 58.162 37.037 0.00 0.00 38.50 2.73
3147 5939 8.838365 GTCATCTATTTTAGAACGGAGAGAGTA 58.162 37.037 0.00 0.00 38.50 2.59
3148 5940 7.201839 GGTCATCTATTTTAGAACGGAGAGAGT 60.202 40.741 0.00 0.00 38.50 3.24
3149 5941 7.142680 GGTCATCTATTTTAGAACGGAGAGAG 58.857 42.308 0.00 0.00 38.50 3.20
3150 5942 6.040616 GGGTCATCTATTTTAGAACGGAGAGA 59.959 42.308 0.00 0.00 38.50 3.10
3151 5943 6.183360 TGGGTCATCTATTTTAGAACGGAGAG 60.183 42.308 0.00 0.00 38.50 3.20
3152 5944 5.659525 TGGGTCATCTATTTTAGAACGGAGA 59.340 40.000 0.00 0.00 38.50 3.71
3153 5945 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
3154 5946 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
3155 5947 7.568199 AATTGGGTCATCTATTTTAGAACGG 57.432 36.000 0.00 0.00 38.50 4.44
3164 5956 9.936329 AGTTGGTATAAAATTGGGTCATCTATT 57.064 29.630 0.00 0.00 0.00 1.73
3165 5957 9.936329 AAGTTGGTATAAAATTGGGTCATCTAT 57.064 29.630 0.00 0.00 0.00 1.98
3166 5958 9.762381 AAAGTTGGTATAAAATTGGGTCATCTA 57.238 29.630 0.00 0.00 0.00 1.98
3167 5959 8.531146 CAAAGTTGGTATAAAATTGGGTCATCT 58.469 33.333 0.00 0.00 0.00 2.90
3168 5960 8.311109 ACAAAGTTGGTATAAAATTGGGTCATC 58.689 33.333 0.00 0.00 0.00 2.92
3169 5961 8.201242 ACAAAGTTGGTATAAAATTGGGTCAT 57.799 30.769 0.00 0.00 0.00 3.06
3170 5962 7.604657 ACAAAGTTGGTATAAAATTGGGTCA 57.395 32.000 0.00 0.00 0.00 4.02
3171 5963 8.799367 AGTACAAAGTTGGTATAAAATTGGGTC 58.201 33.333 0.00 0.00 0.00 4.46
3172 5964 8.715190 AGTACAAAGTTGGTATAAAATTGGGT 57.285 30.769 0.00 0.00 0.00 4.51
3204 5996 9.965824 CCAAAACAGATGACTTAATTTTGTACT 57.034 29.630 0.00 0.00 36.00 2.73
3205 5997 9.959749 TCCAAAACAGATGACTTAATTTTGTAC 57.040 29.630 0.00 0.00 36.00 2.90
3207 5999 9.313118 GTTCCAAAACAGATGACTTAATTTTGT 57.687 29.630 0.00 0.00 36.00 2.83
3208 6000 9.311916 TGTTCCAAAACAGATGACTTAATTTTG 57.688 29.630 0.00 0.00 40.45 2.44
3223 6015 3.456644 TGTACTCCCTCTGTTCCAAAACA 59.543 43.478 0.00 0.00 43.06 2.83
3224 6016 4.081322 TGTACTCCCTCTGTTCCAAAAC 57.919 45.455 0.00 0.00 35.85 2.43
3225 6017 4.165372 AGTTGTACTCCCTCTGTTCCAAAA 59.835 41.667 0.00 0.00 0.00 2.44
3226 6018 3.714798 AGTTGTACTCCCTCTGTTCCAAA 59.285 43.478 0.00 0.00 0.00 3.28
3227 6019 3.071023 CAGTTGTACTCCCTCTGTTCCAA 59.929 47.826 0.00 0.00 0.00 3.53
3228 6020 2.632996 CAGTTGTACTCCCTCTGTTCCA 59.367 50.000 0.00 0.00 0.00 3.53
3229 6021 2.897969 TCAGTTGTACTCCCTCTGTTCC 59.102 50.000 0.00 0.00 0.00 3.62
3230 6022 4.810191 ATCAGTTGTACTCCCTCTGTTC 57.190 45.455 0.00 0.00 0.00 3.18
3231 6023 5.568620 AAATCAGTTGTACTCCCTCTGTT 57.431 39.130 0.00 0.00 0.00 3.16
3232 6024 5.568620 AAAATCAGTTGTACTCCCTCTGT 57.431 39.130 0.00 0.00 0.00 3.41
3233 6025 7.607991 ACAATAAAATCAGTTGTACTCCCTCTG 59.392 37.037 0.00 0.00 34.55 3.35
3234 6026 7.607991 CACAATAAAATCAGTTGTACTCCCTCT 59.392 37.037 0.00 0.00 34.55 3.69
3235 6027 7.148239 CCACAATAAAATCAGTTGTACTCCCTC 60.148 40.741 0.00 0.00 34.55 4.30
3236 6028 6.659242 CCACAATAAAATCAGTTGTACTCCCT 59.341 38.462 0.00 0.00 34.55 4.20
3237 6029 6.657541 TCCACAATAAAATCAGTTGTACTCCC 59.342 38.462 0.00 0.00 34.55 4.30
3238 6030 7.681939 TCCACAATAAAATCAGTTGTACTCC 57.318 36.000 0.00 0.00 34.55 3.85
3311 6104 3.119280 TCTGCCAAACATGCATTCTGATG 60.119 43.478 0.00 0.00 38.22 3.07
3312 6105 3.093814 TCTGCCAAACATGCATTCTGAT 58.906 40.909 0.00 0.00 38.22 2.90
3409 6206 4.498009 GCCTTTGAACCATTCCACGATATG 60.498 45.833 0.00 0.00 0.00 1.78
3476 6320 7.694388 TCTAGTTTGTGTGCGTGATATTATC 57.306 36.000 0.00 0.00 0.00 1.75
3501 6345 0.038166 GAGGGATTGTGAGTGCCCAA 59.962 55.000 0.00 0.00 43.20 4.12
3503 6347 0.329596 AAGAGGGATTGTGAGTGCCC 59.670 55.000 0.00 0.00 41.00 5.36
3504 6348 1.003580 TCAAGAGGGATTGTGAGTGCC 59.996 52.381 0.00 0.00 0.00 5.01
3505 6349 2.479566 TCAAGAGGGATTGTGAGTGC 57.520 50.000 0.00 0.00 0.00 4.40
3506 6350 3.688185 CACATCAAGAGGGATTGTGAGTG 59.312 47.826 0.00 0.00 32.72 3.51
3507 6351 3.584406 TCACATCAAGAGGGATTGTGAGT 59.416 43.478 0.24 0.00 33.99 3.41
3508 6352 3.937706 GTCACATCAAGAGGGATTGTGAG 59.062 47.826 4.44 0.00 36.71 3.51
3509 6353 3.617288 CGTCACATCAAGAGGGATTGTGA 60.617 47.826 0.24 0.24 35.23 3.58
3510 6354 2.674852 CGTCACATCAAGAGGGATTGTG 59.325 50.000 0.00 0.00 32.48 3.33
3511 6355 2.303022 ACGTCACATCAAGAGGGATTGT 59.697 45.455 0.00 0.00 0.00 2.71
3512 6356 2.674852 CACGTCACATCAAGAGGGATTG 59.325 50.000 0.00 0.00 0.00 2.67
3513 6357 2.567169 TCACGTCACATCAAGAGGGATT 59.433 45.455 0.00 0.00 0.00 3.01
3514 6358 2.093973 GTCACGTCACATCAAGAGGGAT 60.094 50.000 0.00 0.00 0.00 3.85
3515 6359 1.272490 GTCACGTCACATCAAGAGGGA 59.728 52.381 0.00 0.00 0.00 4.20
3516 6360 1.673033 GGTCACGTCACATCAAGAGGG 60.673 57.143 0.00 0.00 0.00 4.30
3517 6361 1.273606 AGGTCACGTCACATCAAGAGG 59.726 52.381 0.00 0.00 0.00 3.69
3518 6362 2.732412 AGGTCACGTCACATCAAGAG 57.268 50.000 0.00 0.00 0.00 2.85
3519 6363 2.547855 CCAAGGTCACGTCACATCAAGA 60.548 50.000 0.00 0.00 0.00 3.02
3520 6364 1.800586 CCAAGGTCACGTCACATCAAG 59.199 52.381 0.00 0.00 0.00 3.02
3521 6365 1.140052 ACCAAGGTCACGTCACATCAA 59.860 47.619 0.00 0.00 0.00 2.57
3522 6366 0.756294 ACCAAGGTCACGTCACATCA 59.244 50.000 0.00 0.00 0.00 3.07
3523 6367 1.148310 CACCAAGGTCACGTCACATC 58.852 55.000 0.00 0.00 0.00 3.06
3524 6368 0.250295 CCACCAAGGTCACGTCACAT 60.250 55.000 0.00 0.00 0.00 3.21
3525 6369 1.145156 CCACCAAGGTCACGTCACA 59.855 57.895 0.00 0.00 0.00 3.58
3526 6370 1.597027 CCCACCAAGGTCACGTCAC 60.597 63.158 0.00 0.00 34.66 3.67
3527 6371 1.628238 AACCCACCAAGGTCACGTCA 61.628 55.000 0.00 0.00 40.05 4.35
3528 6372 0.883370 GAACCCACCAAGGTCACGTC 60.883 60.000 0.00 0.00 40.05 4.34
3529 6373 1.147600 GAACCCACCAAGGTCACGT 59.852 57.895 0.00 0.00 40.05 4.49
3530 6374 1.599797 GGAACCCACCAAGGTCACG 60.600 63.158 0.00 0.00 40.05 4.35
3531 6375 0.112412 ATGGAACCCACCAAGGTCAC 59.888 55.000 0.00 0.00 43.47 3.67
3532 6376 0.112218 CATGGAACCCACCAAGGTCA 59.888 55.000 0.00 0.00 43.47 4.02
3533 6377 1.250840 GCATGGAACCCACCAAGGTC 61.251 60.000 0.00 0.00 43.47 3.85
3534 6378 1.228862 GCATGGAACCCACCAAGGT 60.229 57.895 0.00 0.00 43.47 3.50
3535 6379 1.984026 GGCATGGAACCCACCAAGG 60.984 63.158 0.00 0.00 43.47 3.61
3536 6380 0.615544 ATGGCATGGAACCCACCAAG 60.616 55.000 0.00 0.00 43.47 3.61
3537 6381 0.903924 CATGGCATGGAACCCACCAA 60.904 55.000 19.80 0.00 43.47 3.67
3538 6382 1.305129 CATGGCATGGAACCCACCA 60.305 57.895 19.80 0.00 44.41 4.17
3539 6383 1.305213 ACATGGCATGGAACCCACC 60.305 57.895 29.49 0.00 35.80 4.61
3540 6384 0.611618 TGACATGGCATGGAACCCAC 60.612 55.000 29.49 12.55 35.80 4.61
3541 6385 0.323633 CTGACATGGCATGGAACCCA 60.324 55.000 29.49 17.15 38.19 4.51
3542 6386 1.669999 GCTGACATGGCATGGAACCC 61.670 60.000 29.49 13.93 33.60 4.11
3543 6387 0.966875 TGCTGACATGGCATGGAACC 60.967 55.000 29.49 16.14 34.56 3.62
3544 6388 1.108776 ATGCTGACATGGCATGGAAC 58.891 50.000 29.49 19.93 46.85 3.62
3545 6389 3.600187 ATGCTGACATGGCATGGAA 57.400 47.368 29.49 16.70 46.85 3.53
3574 6418 0.692476 TGGTGTCCTTGACCTGATGG 59.308 55.000 0.00 0.00 39.83 3.51
3575 6419 1.349026 ACTGGTGTCCTTGACCTGATG 59.651 52.381 0.00 0.00 36.27 3.07
3576 6420 1.349026 CACTGGTGTCCTTGACCTGAT 59.651 52.381 0.00 0.00 36.27 2.90
3577 6421 0.758734 CACTGGTGTCCTTGACCTGA 59.241 55.000 0.00 0.00 36.27 3.86
3578 6422 0.469917 ACACTGGTGTCCTTGACCTG 59.530 55.000 0.01 0.00 40.24 4.00
3579 6423 0.469917 CACACTGGTGTCCTTGACCT 59.530 55.000 3.16 0.00 42.83 3.85
3580 6424 0.535102 CCACACTGGTGTCCTTGACC 60.535 60.000 3.16 0.00 42.83 4.02
3581 6425 0.468226 TCCACACTGGTGTCCTTGAC 59.532 55.000 3.16 0.00 42.83 3.18
3582 6426 1.434188 ATCCACACTGGTGTCCTTGA 58.566 50.000 3.16 0.00 42.83 3.02
3583 6427 3.055167 TCATATCCACACTGGTGTCCTTG 60.055 47.826 3.16 0.00 42.83 3.61
3584 6428 3.055094 GTCATATCCACACTGGTGTCCTT 60.055 47.826 3.16 0.00 42.83 3.36
3585 6429 2.501723 GTCATATCCACACTGGTGTCCT 59.498 50.000 3.16 0.00 42.83 3.85
3586 6430 2.420129 GGTCATATCCACACTGGTGTCC 60.420 54.545 3.16 0.00 42.83 4.02
3587 6431 2.738643 CGGTCATATCCACACTGGTGTC 60.739 54.545 3.16 0.00 42.83 3.67
3588 6432 1.207089 CGGTCATATCCACACTGGTGT 59.793 52.381 0.01 0.01 46.17 4.16
3589 6433 1.473257 CCGGTCATATCCACACTGGTG 60.473 57.143 0.00 0.00 44.85 4.17
3590 6434 0.830648 CCGGTCATATCCACACTGGT 59.169 55.000 0.00 0.00 39.03 4.00
3591 6435 0.830648 ACCGGTCATATCCACACTGG 59.169 55.000 0.00 0.00 41.72 4.00
3592 6436 2.677836 CAAACCGGTCATATCCACACTG 59.322 50.000 8.04 0.00 0.00 3.66
3593 6437 2.939640 GCAAACCGGTCATATCCACACT 60.940 50.000 8.04 0.00 0.00 3.55
3594 6438 1.400494 GCAAACCGGTCATATCCACAC 59.600 52.381 8.04 0.00 0.00 3.82
3595 6439 1.745232 GCAAACCGGTCATATCCACA 58.255 50.000 8.04 0.00 0.00 4.17
3596 6440 0.655733 CGCAAACCGGTCATATCCAC 59.344 55.000 8.04 0.00 0.00 4.02
3597 6441 1.092921 GCGCAAACCGGTCATATCCA 61.093 55.000 8.04 0.00 37.44 3.41
3598 6442 0.814010 AGCGCAAACCGGTCATATCC 60.814 55.000 8.04 0.00 45.97 2.59
3599 6443 2.690326 AGCGCAAACCGGTCATATC 58.310 52.632 8.04 0.00 45.97 1.63
3600 6444 4.954933 AGCGCAAACCGGTCATAT 57.045 50.000 8.04 0.00 45.97 1.78
3606 6450 1.970917 GATCTGACAGCGCAAACCGG 61.971 60.000 11.47 0.00 37.44 5.28
3607 6451 1.291184 TGATCTGACAGCGCAAACCG 61.291 55.000 11.47 0.00 40.75 4.44
3608 6452 0.874390 TTGATCTGACAGCGCAAACC 59.126 50.000 11.47 0.00 0.00 3.27
3609 6453 1.400242 GGTTGATCTGACAGCGCAAAC 60.400 52.381 11.47 9.44 0.00 2.93
3610 6454 0.874390 GGTTGATCTGACAGCGCAAA 59.126 50.000 11.47 0.00 0.00 3.68
3611 6455 0.955428 GGGTTGATCTGACAGCGCAA 60.955 55.000 11.47 1.77 35.03 4.85
3612 6456 1.375908 GGGTTGATCTGACAGCGCA 60.376 57.895 11.47 0.00 35.03 6.09
3613 6457 2.109126 GGGGTTGATCTGACAGCGC 61.109 63.158 0.00 0.00 34.42 5.92
3614 6458 0.321564 TTGGGGTTGATCTGACAGCG 60.322 55.000 0.00 0.00 0.00 5.18
3615 6459 1.168714 GTTGGGGTTGATCTGACAGC 58.831 55.000 0.00 0.00 0.00 4.40
3616 6460 1.442769 CGTTGGGGTTGATCTGACAG 58.557 55.000 0.00 0.00 0.00 3.51
3620 6464 1.635663 GACGCGTTGGGGTTGATCTG 61.636 60.000 15.53 0.00 39.74 2.90
3624 6468 3.914117 TCGACGCGTTGGGGTTGA 61.914 61.111 25.66 2.74 44.60 3.18
3629 6473 2.030401 TTTGGATCGACGCGTTGGG 61.030 57.895 25.66 12.67 0.00 4.12
3716 6560 3.825611 GCATGCGCCGACCCAAAT 61.826 61.111 4.18 0.00 0.00 2.32
3735 6579 1.480789 TAGGTCATGCTAGCGTTGGA 58.519 50.000 6.73 0.00 0.00 3.53
3744 6588 6.430000 ACGTGAACTAAAAATTAGGTCATGCT 59.570 34.615 26.02 16.03 46.74 3.79
3747 6591 7.972832 TCACGTGAACTAAAAATTAGGTCAT 57.027 32.000 17.62 3.91 42.47 3.06
3748 6592 7.789273 TTCACGTGAACTAAAAATTAGGTCA 57.211 32.000 26.53 12.57 38.79 4.02
3811 6670 2.164624 TGTGGCCGGCAATAATGTTTAC 59.835 45.455 30.85 6.35 0.00 2.01
3812 6671 2.447443 TGTGGCCGGCAATAATGTTTA 58.553 42.857 30.85 0.00 0.00 2.01
3813 6672 1.261480 TGTGGCCGGCAATAATGTTT 58.739 45.000 30.85 0.00 0.00 2.83
3814 6673 1.261480 TTGTGGCCGGCAATAATGTT 58.739 45.000 30.85 0.00 0.00 2.71
3815 6674 1.204467 CTTTGTGGCCGGCAATAATGT 59.796 47.619 30.85 0.00 0.00 2.71
3816 6675 1.471327 CCTTTGTGGCCGGCAATAATG 60.471 52.381 30.85 22.55 0.00 1.90
3817 6676 0.823460 CCTTTGTGGCCGGCAATAAT 59.177 50.000 30.85 0.00 0.00 1.28
3818 6677 2.271940 CCTTTGTGGCCGGCAATAA 58.728 52.632 30.85 20.31 0.00 1.40
3819 6678 4.010575 CCTTTGTGGCCGGCAATA 57.989 55.556 30.85 13.98 0.00 1.90
3840 6699 1.532604 TTGGACGCATGGACTCTCGT 61.533 55.000 0.00 0.00 37.92 4.18
3851 6710 7.867909 TGTTTTAATCAATGTAATTTGGACGCA 59.132 29.630 0.00 0.00 31.22 5.24
3886 6745 1.202498 ACGCCGCCTCCTAGTTTAATC 60.202 52.381 0.00 0.00 0.00 1.75
3888 6747 0.108520 CACGCCGCCTCCTAGTTTAA 60.109 55.000 0.00 0.00 0.00 1.52
3906 6777 0.617820 GGAGGACTCCTAGGGCAACA 60.618 60.000 9.46 0.00 46.16 3.33
3908 6779 4.809513 GGAGGACTCCTAGGGCAA 57.190 61.111 9.46 0.00 46.16 4.52
3918 6789 1.741032 GACGTCGACGAGGAGGACT 60.741 63.158 41.52 18.88 43.02 3.85
3950 6821 4.531912 GACGCCGACGCTGATCGA 62.532 66.667 0.00 0.00 45.13 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.