Multiple sequence alignment - TraesCS5A01G528600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G528600 chr5A 100.000 3154 0 0 1 3154 688673422 688670269 0.000000e+00 5825.0
1 TraesCS5A01G528600 chr5A 83.503 1079 154 19 1448 2521 688665853 688664794 0.000000e+00 985.0
2 TraesCS5A01G528600 chr5A 84.515 536 79 3 1441 1976 562999147 562998616 7.750000e-146 527.0
3 TraesCS5A01G528600 chr5A 84.651 430 49 8 2568 2981 569311909 569311481 2.260000e-111 412.0
4 TraesCS5A01G528600 chr5A 92.614 176 13 0 2979 3154 569311447 569311272 1.450000e-63 254.0
5 TraesCS5A01G528600 chr5A 91.111 135 12 0 2026 2160 707271060 707270926 1.930000e-42 183.0
6 TraesCS5A01G528600 chr5A 88.194 144 14 3 64 206 383828312 383828453 5.410000e-38 169.0
7 TraesCS5A01G528600 chr4B 85.598 1104 142 11 1428 2521 650601336 650600240 0.000000e+00 1142.0
8 TraesCS5A01G528600 chr4B 83.824 476 58 8 890 1347 650601808 650601334 4.830000e-118 435.0
9 TraesCS5A01G528600 chr4B 82.877 292 32 7 508 794 650602127 650601849 2.430000e-61 246.0
10 TraesCS5A01G528600 chr4B 85.926 135 12 3 203 336 650603246 650603118 1.530000e-28 137.0
11 TraesCS5A01G528600 chr4B 90.625 64 2 2 334 394 650602830 650602768 7.250000e-12 82.4
12 TraesCS5A01G528600 chr4D 92.593 648 42 4 703 1347 504071846 504071202 0.000000e+00 926.0
13 TraesCS5A01G528600 chr4D 88.119 505 59 1 1654 2158 504068737 504068234 1.620000e-167 599.0
14 TraesCS5A01G528600 chr4D 89.879 247 24 1 1458 1703 503967484 503967238 1.830000e-82 316.0
15 TraesCS5A01G528600 chr4D 77.978 554 78 20 1977 2521 503967227 503966709 1.100000e-79 307.0
16 TraesCS5A01G528600 chr4D 88.050 159 19 0 1499 1657 504069285 504069127 4.150000e-44 189.0
17 TraesCS5A01G528600 chr4A 82.518 961 147 18 1446 2396 729114424 729115373 0.000000e+00 824.0
18 TraesCS5A01G528600 chr4A 85.054 736 105 5 1446 2179 728728617 728727885 0.000000e+00 745.0
19 TraesCS5A01G528600 chr4A 83.565 432 51 11 2568 2981 563447324 563446895 1.370000e-103 387.0
20 TraesCS5A01G528600 chr4A 92.614 176 13 0 2979 3154 563446861 563446686 1.450000e-63 254.0
21 TraesCS5A01G528600 chr3D 85.497 724 95 8 1441 2162 597398426 597399141 0.000000e+00 747.0
22 TraesCS5A01G528600 chrUn 82.466 730 124 3 1446 2173 30047868 30048595 1.230000e-178 636.0
23 TraesCS5A01G528600 chrUn 84.419 430 50 8 2568 2981 83429960 83429532 1.050000e-109 407.0
24 TraesCS5A01G528600 chrUn 92.045 176 14 0 2979 3154 83429498 83429323 6.760000e-62 248.0
25 TraesCS5A01G528600 chr7D 93.939 429 10 3 2568 2981 589223520 589223947 4.440000e-178 634.0
26 TraesCS5A01G528600 chr7D 96.591 176 6 0 2979 3154 589223981 589224156 3.080000e-75 292.0
27 TraesCS5A01G528600 chr7D 83.333 192 22 3 24 206 495152105 495152295 5.410000e-38 169.0
28 TraesCS5A01G528600 chr7D 85.156 128 14 1 2225 2352 24056858 24056980 3.300000e-25 126.0
29 TraesCS5A01G528600 chr7D 97.778 45 1 0 2523 2567 589223452 589223496 9.380000e-11 78.7
30 TraesCS5A01G528600 chr6A 93.721 430 12 2 2568 2982 14635129 14635558 5.740000e-177 630.0
31 TraesCS5A01G528600 chr6A 87.442 430 35 7 2568 2981 446452237 446452663 7.910000e-131 477.0
32 TraesCS5A01G528600 chr6A 85.814 430 44 11 2568 2981 502949277 502948849 1.040000e-119 440.0
33 TraesCS5A01G528600 chr6A 97.159 176 5 0 2979 3154 14635591 14635766 6.610000e-77 298.0
34 TraesCS5A01G528600 chr6A 91.477 176 15 0 2979 3154 502948815 502948640 3.140000e-60 243.0
35 TraesCS5A01G528600 chr6A 90.909 176 16 0 2979 3154 207813122 207812947 1.460000e-58 237.0
36 TraesCS5A01G528600 chr2B 88.318 428 31 4 2569 2980 136610974 136611398 2.190000e-136 496.0
37 TraesCS5A01G528600 chr2B 98.851 87 1 0 1344 1430 43275171 43275257 4.210000e-34 156.0
38 TraesCS5A01G528600 chr1A 87.907 430 34 6 2568 2981 353364394 353364821 1.020000e-134 490.0
39 TraesCS5A01G528600 chr1A 90.710 183 15 2 2974 3154 353364848 353365030 3.140000e-60 243.0
40 TraesCS5A01G528600 chr5D 88.974 390 26 4 2568 2941 483561611 483561223 1.710000e-127 466.0
41 TraesCS5A01G528600 chr7A 84.651 430 48 11 2568 2981 49504622 49505049 2.260000e-111 412.0
42 TraesCS5A01G528600 chr7A 90.345 145 12 2 63 206 510900803 510900660 4.150000e-44 189.0
43 TraesCS5A01G528600 chr7A 87.586 145 16 2 63 206 641454470 641454613 1.950000e-37 167.0
44 TraesCS5A01G528600 chr7A 97.778 90 2 0 1345 1434 471816100 471816189 4.210000e-34 156.0
45 TraesCS5A01G528600 chr5B 79.327 416 52 17 1712 2104 681069762 681070166 8.680000e-66 261.0
46 TraesCS5A01G528600 chr2D 91.429 175 15 0 2980 3154 22487680 22487506 1.130000e-59 241.0
47 TraesCS5A01G528600 chr2D 88.356 146 14 3 62 206 344313292 344313435 4.180000e-39 172.0
48 TraesCS5A01G528600 chr2D 91.150 113 9 1 1319 1430 131465415 131465303 5.450000e-33 152.0
49 TraesCS5A01G528600 chr2D 95.745 94 4 0 1337 1430 188886177 188886084 5.450000e-33 152.0
50 TraesCS5A01G528600 chr3B 90.345 145 12 2 63 206 186089243 186089100 4.150000e-44 189.0
51 TraesCS5A01G528600 chr3B 89.655 145 13 2 63 206 184957740 184957597 1.930000e-42 183.0
52 TraesCS5A01G528600 chr3B 88.571 140 12 4 68 206 760803960 760803824 1.950000e-37 167.0
53 TraesCS5A01G528600 chr2A 88.276 145 14 3 62 204 2742198 2742341 1.500000e-38 171.0
54 TraesCS5A01G528600 chr2A 95.789 95 4 0 1340 1434 398587674 398587768 1.510000e-33 154.0
55 TraesCS5A01G528600 chr2A 95.789 95 4 0 1340 1434 398743308 398743214 1.510000e-33 154.0
56 TraesCS5A01G528600 chr1B 96.774 93 3 0 1344 1436 234252675 234252583 4.210000e-34 156.0
57 TraesCS5A01G528600 chr6B 96.739 92 3 0 1345 1436 713175882 713175791 1.510000e-33 154.0
58 TraesCS5A01G528600 chr3A 96.703 91 3 0 1344 1434 330699667 330699577 5.450000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G528600 chr5A 688670269 688673422 3153 True 5825.000000 5825 100.000000 1 3154 1 chr5A.!!$R3 3153
1 TraesCS5A01G528600 chr5A 688664794 688665853 1059 True 985.000000 985 83.503000 1448 2521 1 chr5A.!!$R2 1073
2 TraesCS5A01G528600 chr5A 562998616 562999147 531 True 527.000000 527 84.515000 1441 1976 1 chr5A.!!$R1 535
3 TraesCS5A01G528600 chr5A 569311272 569311909 637 True 333.000000 412 88.632500 2568 3154 2 chr5A.!!$R5 586
4 TraesCS5A01G528600 chr4B 650600240 650603246 3006 True 408.480000 1142 85.770000 203 2521 5 chr4B.!!$R1 2318
5 TraesCS5A01G528600 chr4D 504068234 504071846 3612 True 571.333333 926 89.587333 703 2158 3 chr4D.!!$R2 1455
6 TraesCS5A01G528600 chr4D 503966709 503967484 775 True 311.500000 316 83.928500 1458 2521 2 chr4D.!!$R1 1063
7 TraesCS5A01G528600 chr4A 729114424 729115373 949 False 824.000000 824 82.518000 1446 2396 1 chr4A.!!$F1 950
8 TraesCS5A01G528600 chr4A 728727885 728728617 732 True 745.000000 745 85.054000 1446 2179 1 chr4A.!!$R1 733
9 TraesCS5A01G528600 chr4A 563446686 563447324 638 True 320.500000 387 88.089500 2568 3154 2 chr4A.!!$R2 586
10 TraesCS5A01G528600 chr3D 597398426 597399141 715 False 747.000000 747 85.497000 1441 2162 1 chr3D.!!$F1 721
11 TraesCS5A01G528600 chrUn 30047868 30048595 727 False 636.000000 636 82.466000 1446 2173 1 chrUn.!!$F1 727
12 TraesCS5A01G528600 chrUn 83429323 83429960 637 True 327.500000 407 88.232000 2568 3154 2 chrUn.!!$R1 586
13 TraesCS5A01G528600 chr7D 589223452 589224156 704 False 334.900000 634 96.102667 2523 3154 3 chr7D.!!$F3 631
14 TraesCS5A01G528600 chr6A 14635129 14635766 637 False 464.000000 630 95.440000 2568 3154 2 chr6A.!!$F2 586
15 TraesCS5A01G528600 chr6A 502948640 502949277 637 True 341.500000 440 88.645500 2568 3154 2 chr6A.!!$R2 586
16 TraesCS5A01G528600 chr1A 353364394 353365030 636 False 366.500000 490 89.308500 2568 3154 2 chr1A.!!$F1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 1408 0.167908 CTGCCGCTCGTTTTTATGCA 59.832 50.0 0.0 0.0 0.00 3.96 F
706 1531 0.600255 AACAGCAACGTCTCTTCCCG 60.600 55.0 0.0 0.0 0.00 5.14 F
1518 4212 0.179240 CAATGACGACTGCTTCACGC 60.179 55.0 0.0 0.0 39.77 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1422 2268 0.535797 CCGGACTGAAAGGTACTCCC 59.464 60.000 0.00 0.0 38.49 4.30 R
1823 4911 0.610174 AGTCGCTTGGCAGAGAATCA 59.390 50.000 0.00 0.0 37.82 2.57 R
2400 5504 1.881973 TGTCAGAGCATGCAAACCTTC 59.118 47.619 21.98 7.4 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.290776 GAGACACACCTCCACACAC 57.709 57.895 0.00 0.00 0.00 3.82
23 24 0.597637 GAGACACACCTCCACACACG 60.598 60.000 0.00 0.00 0.00 4.49
24 25 2.203015 ACACACCTCCACACACGC 60.203 61.111 0.00 0.00 0.00 5.34
25 26 2.108976 CACACCTCCACACACGCT 59.891 61.111 0.00 0.00 0.00 5.07
26 27 1.365999 CACACCTCCACACACGCTA 59.634 57.895 0.00 0.00 0.00 4.26
27 28 0.249699 CACACCTCCACACACGCTAA 60.250 55.000 0.00 0.00 0.00 3.09
28 29 0.466543 ACACCTCCACACACGCTAAA 59.533 50.000 0.00 0.00 0.00 1.85
29 30 0.865769 CACCTCCACACACGCTAAAC 59.134 55.000 0.00 0.00 0.00 2.01
30 31 0.466543 ACCTCCACACACGCTAAACA 59.533 50.000 0.00 0.00 0.00 2.83
31 32 0.865769 CCTCCACACACGCTAAACAC 59.134 55.000 0.00 0.00 0.00 3.32
32 33 1.577468 CTCCACACACGCTAAACACA 58.423 50.000 0.00 0.00 0.00 3.72
33 34 1.260561 CTCCACACACGCTAAACACAC 59.739 52.381 0.00 0.00 0.00 3.82
34 35 0.306533 CCACACACGCTAAACACACC 59.693 55.000 0.00 0.00 0.00 4.16
35 36 1.010580 CACACACGCTAAACACACCA 58.989 50.000 0.00 0.00 0.00 4.17
36 37 1.601903 CACACACGCTAAACACACCAT 59.398 47.619 0.00 0.00 0.00 3.55
37 38 2.032799 CACACACGCTAAACACACCATT 59.967 45.455 0.00 0.00 0.00 3.16
38 39 2.032799 ACACACGCTAAACACACCATTG 59.967 45.455 0.00 0.00 0.00 2.82
39 40 1.606668 ACACGCTAAACACACCATTGG 59.393 47.619 0.00 0.00 0.00 3.16
40 41 1.068610 CACGCTAAACACACCATTGGG 60.069 52.381 7.78 0.00 41.29 4.12
41 42 1.202830 ACGCTAAACACACCATTGGGA 60.203 47.619 7.78 0.00 38.05 4.37
42 43 1.199097 CGCTAAACACACCATTGGGAC 59.801 52.381 7.78 0.00 38.05 4.46
43 44 1.199097 GCTAAACACACCATTGGGACG 59.801 52.381 7.78 0.00 38.05 4.79
44 45 2.773487 CTAAACACACCATTGGGACGA 58.227 47.619 7.78 0.00 38.05 4.20
45 46 1.604604 AAACACACCATTGGGACGAG 58.395 50.000 7.78 0.00 38.05 4.18
46 47 0.250727 AACACACCATTGGGACGAGG 60.251 55.000 7.78 0.00 38.05 4.63
47 48 1.125093 ACACACCATTGGGACGAGGA 61.125 55.000 7.78 0.00 38.05 3.71
48 49 0.253044 CACACCATTGGGACGAGGAT 59.747 55.000 7.78 0.00 38.05 3.24
49 50 1.484653 CACACCATTGGGACGAGGATA 59.515 52.381 7.78 0.00 38.05 2.59
50 51 1.762957 ACACCATTGGGACGAGGATAG 59.237 52.381 7.78 0.00 38.05 2.08
51 52 2.039418 CACCATTGGGACGAGGATAGA 58.961 52.381 7.78 0.00 38.05 1.98
52 53 2.434336 CACCATTGGGACGAGGATAGAA 59.566 50.000 7.78 0.00 38.05 2.10
53 54 3.071602 CACCATTGGGACGAGGATAGAAT 59.928 47.826 7.78 0.00 38.05 2.40
54 55 3.071602 ACCATTGGGACGAGGATAGAATG 59.928 47.826 7.78 0.00 38.05 2.67
55 56 3.071602 CCATTGGGACGAGGATAGAATGT 59.928 47.826 0.00 0.00 35.59 2.71
56 57 3.819564 TTGGGACGAGGATAGAATGTG 57.180 47.619 0.00 0.00 0.00 3.21
57 58 2.039418 TGGGACGAGGATAGAATGTGG 58.961 52.381 0.00 0.00 0.00 4.17
58 59 1.344763 GGGACGAGGATAGAATGTGGG 59.655 57.143 0.00 0.00 0.00 4.61
59 60 2.317040 GGACGAGGATAGAATGTGGGA 58.683 52.381 0.00 0.00 0.00 4.37
60 61 2.297597 GGACGAGGATAGAATGTGGGAG 59.702 54.545 0.00 0.00 0.00 4.30
61 62 1.689273 ACGAGGATAGAATGTGGGAGC 59.311 52.381 0.00 0.00 0.00 4.70
62 63 1.001406 CGAGGATAGAATGTGGGAGCC 59.999 57.143 0.00 0.00 0.00 4.70
63 64 2.334023 GAGGATAGAATGTGGGAGCCT 58.666 52.381 0.00 0.00 0.00 4.58
64 65 3.511477 GAGGATAGAATGTGGGAGCCTA 58.489 50.000 0.00 0.00 0.00 3.93
65 66 3.513515 GAGGATAGAATGTGGGAGCCTAG 59.486 52.174 0.00 0.00 0.00 3.02
66 67 3.116551 AGGATAGAATGTGGGAGCCTAGT 60.117 47.826 0.00 0.00 0.00 2.57
67 68 4.108124 AGGATAGAATGTGGGAGCCTAGTA 59.892 45.833 0.00 0.00 0.00 1.82
68 69 4.838986 GGATAGAATGTGGGAGCCTAGTAA 59.161 45.833 0.00 0.00 0.00 2.24
69 70 5.046950 GGATAGAATGTGGGAGCCTAGTAAG 60.047 48.000 0.00 0.00 0.00 2.34
70 71 3.041946 AGAATGTGGGAGCCTAGTAAGG 58.958 50.000 0.00 0.00 46.76 2.69
71 72 1.807814 ATGTGGGAGCCTAGTAAGGG 58.192 55.000 0.00 0.00 43.87 3.95
72 73 0.714180 TGTGGGAGCCTAGTAAGGGA 59.286 55.000 0.00 0.00 43.87 4.20
73 74 1.121378 GTGGGAGCCTAGTAAGGGAC 58.879 60.000 0.00 0.00 43.87 4.46
74 75 0.714180 TGGGAGCCTAGTAAGGGACA 59.286 55.000 0.00 0.00 43.87 4.02
75 76 1.294068 TGGGAGCCTAGTAAGGGACAT 59.706 52.381 0.00 0.00 43.87 3.06
76 77 1.972075 GGGAGCCTAGTAAGGGACATC 59.028 57.143 0.00 0.00 43.87 3.06
77 78 1.614413 GGAGCCTAGTAAGGGACATCG 59.386 57.143 0.00 0.00 43.87 3.84
78 79 1.000052 GAGCCTAGTAAGGGACATCGC 60.000 57.143 0.00 0.00 43.87 4.58
79 80 0.318784 GCCTAGTAAGGGACATCGCG 60.319 60.000 0.00 0.00 43.87 5.87
80 81 0.314302 CCTAGTAAGGGACATCGCGG 59.686 60.000 6.13 0.00 39.48 6.46
81 82 0.318784 CTAGTAAGGGACATCGCGGC 60.319 60.000 6.13 0.00 0.00 6.53
82 83 1.741327 TAGTAAGGGACATCGCGGCC 61.741 60.000 6.13 2.70 0.00 6.13
83 84 4.215742 TAAGGGACATCGCGGCCG 62.216 66.667 24.05 24.05 0.00 6.13
99 100 3.443045 CGCCACACAGCCCCAATC 61.443 66.667 0.00 0.00 0.00 2.67
100 101 2.283101 GCCACACAGCCCCAATCA 60.283 61.111 0.00 0.00 0.00 2.57
101 102 1.907807 GCCACACAGCCCCAATCAA 60.908 57.895 0.00 0.00 0.00 2.57
102 103 1.470996 GCCACACAGCCCCAATCAAA 61.471 55.000 0.00 0.00 0.00 2.69
103 104 0.604578 CCACACAGCCCCAATCAAAG 59.395 55.000 0.00 0.00 0.00 2.77
104 105 1.619654 CACACAGCCCCAATCAAAGA 58.380 50.000 0.00 0.00 0.00 2.52
105 106 1.270550 CACACAGCCCCAATCAAAGAC 59.729 52.381 0.00 0.00 0.00 3.01
106 107 1.133513 ACACAGCCCCAATCAAAGACA 60.134 47.619 0.00 0.00 0.00 3.41
107 108 2.173519 CACAGCCCCAATCAAAGACAT 58.826 47.619 0.00 0.00 0.00 3.06
108 109 2.564062 CACAGCCCCAATCAAAGACATT 59.436 45.455 0.00 0.00 0.00 2.71
109 110 2.564062 ACAGCCCCAATCAAAGACATTG 59.436 45.455 0.00 0.00 40.58 2.82
122 123 7.873719 TCAAAGACATTGAACCTAACAAGAA 57.126 32.000 0.00 0.00 44.94 2.52
123 124 7.703328 TCAAAGACATTGAACCTAACAAGAAC 58.297 34.615 0.00 0.00 44.94 3.01
124 125 5.924475 AGACATTGAACCTAACAAGAACG 57.076 39.130 0.00 0.00 0.00 3.95
125 126 5.607477 AGACATTGAACCTAACAAGAACGA 58.393 37.500 0.00 0.00 0.00 3.85
126 127 5.696724 AGACATTGAACCTAACAAGAACGAG 59.303 40.000 0.00 0.00 0.00 4.18
127 128 5.607477 ACATTGAACCTAACAAGAACGAGA 58.393 37.500 0.00 0.00 0.00 4.04
128 129 6.053005 ACATTGAACCTAACAAGAACGAGAA 58.947 36.000 0.00 0.00 0.00 2.87
129 130 5.978934 TTGAACCTAACAAGAACGAGAAC 57.021 39.130 0.00 0.00 0.00 3.01
130 131 4.046462 TGAACCTAACAAGAACGAGAACG 58.954 43.478 0.00 0.00 45.75 3.95
131 132 3.022607 ACCTAACAAGAACGAGAACGG 57.977 47.619 0.00 0.00 44.46 4.44
132 133 2.288640 ACCTAACAAGAACGAGAACGGG 60.289 50.000 0.00 0.00 44.46 5.28
133 134 1.725164 CTAACAAGAACGAGAACGGGC 59.275 52.381 0.00 0.00 44.46 6.13
134 135 0.883370 AACAAGAACGAGAACGGGCC 60.883 55.000 0.00 0.00 44.46 5.80
135 136 2.033194 CAAGAACGAGAACGGGCCC 61.033 63.158 13.57 13.57 44.46 5.80
136 137 3.249837 AAGAACGAGAACGGGCCCC 62.250 63.158 18.66 1.24 44.46 5.80
137 138 3.703127 GAACGAGAACGGGCCCCT 61.703 66.667 18.66 7.65 44.46 4.79
138 139 3.660732 GAACGAGAACGGGCCCCTC 62.661 68.421 18.66 16.35 44.46 4.30
159 160 2.365635 CCGGTGGGGGACTGAGAT 60.366 66.667 0.00 0.00 31.77 2.75
160 161 2.435693 CCGGTGGGGGACTGAGATC 61.436 68.421 0.00 0.00 31.77 2.75
161 162 2.435693 CGGTGGGGGACTGAGATCC 61.436 68.421 0.00 0.00 38.13 3.36
162 163 1.003573 GGTGGGGGACTGAGATCCT 59.996 63.158 0.00 0.00 38.95 3.24
163 164 1.051556 GGTGGGGGACTGAGATCCTC 61.052 65.000 0.00 0.00 38.71 3.71
165 166 3.863606 GGGGACTGAGATCCTCCG 58.136 66.667 0.00 0.00 38.95 4.63
166 167 2.503382 GGGGACTGAGATCCTCCGC 61.503 68.421 0.00 0.00 38.95 5.54
167 168 1.758514 GGGACTGAGATCCTCCGCA 60.759 63.158 0.00 0.00 38.95 5.69
168 169 1.439644 GGACTGAGATCCTCCGCAC 59.560 63.158 0.00 0.00 35.68 5.34
169 170 1.439644 GACTGAGATCCTCCGCACC 59.560 63.158 0.00 0.00 0.00 5.01
170 171 1.000993 ACTGAGATCCTCCGCACCT 59.999 57.895 0.00 0.00 0.00 4.00
171 172 1.040339 ACTGAGATCCTCCGCACCTC 61.040 60.000 0.00 0.00 0.00 3.85
172 173 1.743321 CTGAGATCCTCCGCACCTCC 61.743 65.000 0.00 0.00 0.00 4.30
173 174 1.758514 GAGATCCTCCGCACCTCCA 60.759 63.158 0.00 0.00 0.00 3.86
174 175 1.074926 AGATCCTCCGCACCTCCAT 60.075 57.895 0.00 0.00 0.00 3.41
175 176 1.070445 GATCCTCCGCACCTCCATG 59.930 63.158 0.00 0.00 0.00 3.66
176 177 2.388890 GATCCTCCGCACCTCCATGG 62.389 65.000 4.97 4.97 42.93 3.66
177 178 4.864334 CCTCCGCACCTCCATGGC 62.864 72.222 6.96 0.00 40.22 4.40
178 179 4.864334 CTCCGCACCTCCATGGCC 62.864 72.222 6.96 0.00 40.22 5.36
180 181 3.479203 CCGCACCTCCATGGCCTA 61.479 66.667 6.96 0.00 40.22 3.93
181 182 2.109799 CGCACCTCCATGGCCTAG 59.890 66.667 6.96 0.00 40.22 3.02
182 183 2.434843 CGCACCTCCATGGCCTAGA 61.435 63.158 6.96 0.00 40.22 2.43
183 184 1.449353 GCACCTCCATGGCCTAGAG 59.551 63.158 6.96 7.30 40.22 2.43
196 197 2.739885 CCTAGAGGCCATCGAAGATG 57.260 55.000 5.01 3.21 45.12 2.90
197 198 1.274728 CCTAGAGGCCATCGAAGATGG 59.725 57.143 21.26 21.26 45.12 3.51
198 199 1.274728 CTAGAGGCCATCGAAGATGGG 59.725 57.143 25.10 11.14 45.12 4.00
199 200 1.072159 GAGGCCATCGAAGATGGGG 59.928 63.158 25.10 6.61 45.12 4.96
200 201 2.595754 GGCCATCGAAGATGGGGC 60.596 66.667 25.10 14.68 45.12 5.80
201 202 2.974698 GCCATCGAAGATGGGGCG 60.975 66.667 25.10 5.65 45.12 6.13
202 203 2.281070 CCATCGAAGATGGGGCGG 60.281 66.667 18.63 0.00 45.12 6.13
203 204 2.807107 CCATCGAAGATGGGGCGGA 61.807 63.158 18.63 0.00 45.12 5.54
204 205 1.595382 CATCGAAGATGGGGCGGAC 60.595 63.158 2.29 0.00 45.12 4.79
205 206 2.808206 ATCGAAGATGGGGCGGACC 61.808 63.158 0.00 0.00 45.12 4.46
218 219 1.303236 CGGACCCACTTGGCAATCA 60.303 57.895 0.00 0.00 37.83 2.57
220 221 1.408127 CGGACCCACTTGGCAATCATA 60.408 52.381 0.00 0.00 37.83 2.15
221 222 2.749466 CGGACCCACTTGGCAATCATAT 60.749 50.000 0.00 0.00 37.83 1.78
222 223 2.624838 GGACCCACTTGGCAATCATATG 59.375 50.000 0.00 0.00 37.83 1.78
223 224 3.290710 GACCCACTTGGCAATCATATGT 58.709 45.455 0.00 0.00 37.83 2.29
224 225 3.290710 ACCCACTTGGCAATCATATGTC 58.709 45.455 0.00 0.00 37.83 3.06
225 226 2.291465 CCCACTTGGCAATCATATGTCG 59.709 50.000 0.00 0.00 0.00 4.35
229 230 4.009675 ACTTGGCAATCATATGTCGTTGT 58.990 39.130 0.00 0.00 0.00 3.32
264 265 6.200286 GCCAATCATGTGATTTAATCAAGCAG 59.800 38.462 9.39 1.10 42.41 4.24
274 275 9.793252 GTGATTTAATCAAGCAGATAAACACAT 57.207 29.630 9.39 0.00 41.69 3.21
281 282 5.704978 TCAAGCAGATAAACACATAGCACAA 59.295 36.000 0.00 0.00 0.00 3.33
283 284 6.369059 AGCAGATAAACACATAGCACAATC 57.631 37.500 0.00 0.00 0.00 2.67
286 287 6.635641 GCAGATAAACACATAGCACAATCATG 59.364 38.462 0.00 0.00 0.00 3.07
296 297 7.969508 CACATAGCACAATCATGAACACAATAA 59.030 33.333 0.00 0.00 0.00 1.40
330 331 6.987403 AACCAGATATAGGGAGAGAAACTC 57.013 41.667 0.00 0.00 44.24 3.01
336 337 7.893302 CAGATATAGGGAGAGAAACTCAGGTAT 59.107 40.741 0.00 0.00 46.54 2.73
346 636 9.320352 GAGAGAAACTCAGGTATTTTATCTTCC 57.680 37.037 0.00 0.00 44.36 3.46
394 687 3.995636 ACTCATTGCCTTCTACTCCCTA 58.004 45.455 0.00 0.00 0.00 3.53
395 688 4.561752 ACTCATTGCCTTCTACTCCCTAT 58.438 43.478 0.00 0.00 0.00 2.57
399 692 7.293535 ACTCATTGCCTTCTACTCCCTATATTT 59.706 37.037 0.00 0.00 0.00 1.40
400 693 7.680730 TCATTGCCTTCTACTCCCTATATTTC 58.319 38.462 0.00 0.00 0.00 2.17
401 694 6.435292 TTGCCTTCTACTCCCTATATTTCC 57.565 41.667 0.00 0.00 0.00 3.13
402 695 5.473273 TGCCTTCTACTCCCTATATTTCCA 58.527 41.667 0.00 0.00 0.00 3.53
404 697 6.388689 TGCCTTCTACTCCCTATATTTCCAAA 59.611 38.462 0.00 0.00 0.00 3.28
405 698 6.937465 GCCTTCTACTCCCTATATTTCCAAAG 59.063 42.308 0.00 0.00 0.00 2.77
407 700 8.371699 CCTTCTACTCCCTATATTTCCAAAGAG 58.628 40.741 0.00 0.00 0.00 2.85
408 701 7.304497 TCTACTCCCTATATTTCCAAAGAGC 57.696 40.000 0.00 0.00 0.00 4.09
409 702 4.962155 ACTCCCTATATTTCCAAAGAGCG 58.038 43.478 0.00 0.00 0.00 5.03
410 703 4.654262 ACTCCCTATATTTCCAAAGAGCGA 59.346 41.667 0.00 0.00 0.00 4.93
412 705 3.741344 CCCTATATTTCCAAAGAGCGACG 59.259 47.826 0.00 0.00 0.00 5.12
416 1194 4.735132 TCCAAAGAGCGACGCGGG 62.735 66.667 15.18 12.05 0.00 6.13
429 1207 1.227089 CGCGGGTCAGATCCTGAAG 60.227 63.158 0.00 0.00 42.46 3.02
430 1208 1.144936 GCGGGTCAGATCCTGAAGG 59.855 63.158 0.00 0.00 42.46 3.46
452 1230 4.440387 GGACTACTTCCGACTGAATTCCTC 60.440 50.000 2.27 0.00 33.46 3.71
453 1231 4.087182 ACTACTTCCGACTGAATTCCTCA 58.913 43.478 2.27 0.00 31.06 3.86
454 1232 4.527038 ACTACTTCCGACTGAATTCCTCAA 59.473 41.667 2.27 0.00 32.17 3.02
457 1235 5.130350 ACTTCCGACTGAATTCCTCAAAAA 58.870 37.500 2.27 0.00 32.17 1.94
458 1236 5.008712 ACTTCCGACTGAATTCCTCAAAAAC 59.991 40.000 2.27 0.00 32.17 2.43
459 1237 4.714632 TCCGACTGAATTCCTCAAAAACT 58.285 39.130 2.27 0.00 32.17 2.66
461 1239 6.472887 TCCGACTGAATTCCTCAAAAACTAT 58.527 36.000 2.27 0.00 32.17 2.12
462 1240 6.940298 TCCGACTGAATTCCTCAAAAACTATT 59.060 34.615 2.27 0.00 32.17 1.73
463 1241 7.447238 TCCGACTGAATTCCTCAAAAACTATTT 59.553 33.333 2.27 0.00 32.17 1.40
464 1242 7.750903 CCGACTGAATTCCTCAAAAACTATTTC 59.249 37.037 2.27 0.00 32.17 2.17
465 1243 7.750903 CGACTGAATTCCTCAAAAACTATTTCC 59.249 37.037 2.27 0.00 32.17 3.13
467 1245 7.447238 ACTGAATTCCTCAAAAACTATTTCCGA 59.553 33.333 2.27 0.00 32.17 4.55
468 1246 7.590279 TGAATTCCTCAAAAACTATTTCCGAC 58.410 34.615 2.27 0.00 0.00 4.79
470 1248 6.554334 TTCCTCAAAAACTATTTCCGACTG 57.446 37.500 0.00 0.00 0.00 3.51
471 1249 5.860611 TCCTCAAAAACTATTTCCGACTGA 58.139 37.500 0.00 0.00 0.00 3.41
472 1250 6.292923 TCCTCAAAAACTATTTCCGACTGAA 58.707 36.000 0.00 0.00 0.00 3.02
473 1251 6.940298 TCCTCAAAAACTATTTCCGACTGAAT 59.060 34.615 0.00 0.00 31.67 2.57
474 1252 7.447238 TCCTCAAAAACTATTTCCGACTGAATT 59.553 33.333 0.00 0.00 31.67 2.17
475 1253 7.750903 CCTCAAAAACTATTTCCGACTGAATTC 59.249 37.037 0.00 0.00 31.67 2.17
478 1256 6.986904 AAACTATTTCCGACTGAATTCCTC 57.013 37.500 2.27 0.00 31.67 3.71
479 1257 5.677319 ACTATTTCCGACTGAATTCCTCA 57.323 39.130 2.27 0.00 31.67 3.86
481 1259 6.472887 ACTATTTCCGACTGAATTCCTCAAA 58.527 36.000 2.27 0.00 32.17 2.69
483 1261 6.648879 ATTTCCGACTGAATTCCTCAAAAA 57.351 33.333 2.27 2.24 32.17 1.94
484 1262 5.432885 TTCCGACTGAATTCCTCAAAAAC 57.567 39.130 2.27 0.00 32.17 2.43
487 1265 5.048782 TCCGACTGAATTCCTCAAAAACATG 60.049 40.000 2.27 0.00 32.17 3.21
488 1266 4.618489 CGACTGAATTCCTCAAAAACATGC 59.382 41.667 2.27 0.00 32.17 4.06
489 1267 5.563475 CGACTGAATTCCTCAAAAACATGCT 60.563 40.000 2.27 0.00 32.17 3.79
491 1269 4.797471 TGAATTCCTCAAAAACATGCTCG 58.203 39.130 2.27 0.00 0.00 5.03
493 1271 4.853924 ATTCCTCAAAAACATGCTCGTT 57.146 36.364 0.00 0.00 0.00 3.85
495 1273 2.053627 CCTCAAAAACATGCTCGTTGC 58.946 47.619 0.00 0.00 43.25 4.17
505 1283 2.244000 GCTCGTTGCAAACCTAGCA 58.756 52.632 0.00 0.00 46.28 3.49
506 1284 0.591170 GCTCGTTGCAAACCTAGCAA 59.409 50.000 0.00 0.00 46.28 3.91
519 1339 3.549794 ACCTAGCAAGCTCCAAATCATC 58.450 45.455 0.00 0.00 0.00 2.92
522 1342 4.023107 CCTAGCAAGCTCCAAATCATCATG 60.023 45.833 0.00 0.00 0.00 3.07
523 1343 3.362706 AGCAAGCTCCAAATCATCATGT 58.637 40.909 0.00 0.00 0.00 3.21
524 1344 3.767673 AGCAAGCTCCAAATCATCATGTT 59.232 39.130 0.00 0.00 0.00 2.71
525 1345 4.222145 AGCAAGCTCCAAATCATCATGTTT 59.778 37.500 0.00 0.00 0.00 2.83
574 1394 2.993545 TGAAACGATGTTTTTCTGCCG 58.006 42.857 0.00 0.00 34.58 5.69
582 1402 1.133407 TGTTTTTCTGCCGCTCGTTTT 59.867 42.857 0.00 0.00 0.00 2.43
584 1404 3.181499 TGTTTTTCTGCCGCTCGTTTTTA 60.181 39.130 0.00 0.00 0.00 1.52
586 1406 2.892373 TTCTGCCGCTCGTTTTTATG 57.108 45.000 0.00 0.00 0.00 1.90
588 1408 0.167908 CTGCCGCTCGTTTTTATGCA 59.832 50.000 0.00 0.00 0.00 3.96
589 1409 0.808125 TGCCGCTCGTTTTTATGCAT 59.192 45.000 3.79 3.79 0.00 3.96
590 1410 1.201181 TGCCGCTCGTTTTTATGCATT 59.799 42.857 3.54 0.00 0.00 3.56
591 1411 2.258755 GCCGCTCGTTTTTATGCATTT 58.741 42.857 3.54 0.00 0.00 2.32
592 1412 3.119814 TGCCGCTCGTTTTTATGCATTTA 60.120 39.130 3.54 0.00 0.00 1.40
593 1413 3.854809 GCCGCTCGTTTTTATGCATTTAA 59.145 39.130 3.54 0.00 0.00 1.52
599 1419 8.794406 CGCTCGTTTTTATGCATTTAATTAAGT 58.206 29.630 3.54 0.00 0.00 2.24
630 1453 0.883153 TGCGCAGTGCTGATTTTGAT 59.117 45.000 5.66 0.00 46.63 2.57
648 1471 1.369692 TCGTCAGGCGACAACCAAT 59.630 52.632 0.00 0.00 45.68 3.16
694 1519 5.695816 GCTGAAACATTGGAATTAACAGCAA 59.304 36.000 0.00 0.00 44.65 3.91
699 1524 4.518970 ACATTGGAATTAACAGCAACGTCT 59.481 37.500 0.00 0.00 0.00 4.18
706 1531 0.600255 AACAGCAACGTCTCTTCCCG 60.600 55.000 0.00 0.00 0.00 5.14
720 1545 4.407621 TCTCTTCCCGATAAATACAAGGCA 59.592 41.667 0.00 0.00 0.00 4.75
741 1569 4.059511 CAGCAGCATTGGAATTTGAAACA 58.940 39.130 0.00 0.00 0.00 2.83
767 1595 4.761745 CATGCACCGTCGTCTAAATAATG 58.238 43.478 0.00 0.00 0.00 1.90
857 1685 1.478510 ACGCCTTCCTGAGTCATGTAG 59.521 52.381 0.00 0.00 0.00 2.74
858 1686 1.478510 CGCCTTCCTGAGTCATGTAGT 59.521 52.381 0.00 0.00 0.00 2.73
859 1687 2.688446 CGCCTTCCTGAGTCATGTAGTA 59.312 50.000 0.00 0.00 0.00 1.82
860 1688 3.243234 CGCCTTCCTGAGTCATGTAGTAG 60.243 52.174 0.00 0.00 0.00 2.57
861 1689 3.702045 GCCTTCCTGAGTCATGTAGTAGT 59.298 47.826 0.00 0.00 0.00 2.73
862 1690 4.888239 GCCTTCCTGAGTCATGTAGTAGTA 59.112 45.833 0.00 0.00 0.00 1.82
901 1729 2.148768 GTACCCCCAACTTCTGTTTCG 58.851 52.381 0.00 0.00 33.52 3.46
908 1736 2.097466 CCAACTTCTGTTTCGTTGCACT 59.903 45.455 0.00 0.00 37.34 4.40
936 1764 3.370846 CCATGGCCAACTACTCATCTTCA 60.371 47.826 10.96 0.00 0.00 3.02
938 1766 4.574674 TGGCCAACTACTCATCTTCATT 57.425 40.909 0.61 0.00 0.00 2.57
969 1815 0.670546 CTCCAGGTTACAGCCACACG 60.671 60.000 0.00 0.00 0.00 4.49
996 1842 3.290710 CCTCCGTTTCATTCCATTCCAT 58.709 45.455 0.00 0.00 0.00 3.41
1020 1866 3.435186 GCCAACAGCTCGCCTTCC 61.435 66.667 0.00 0.00 38.99 3.46
1071 1917 1.893786 GAGATGCCGGACAGAGTGT 59.106 57.895 5.05 0.00 0.00 3.55
1107 1953 3.827302 ACAACTTCGAGGTGACTGAGTAT 59.173 43.478 0.00 0.00 44.43 2.12
1215 2061 1.635487 CCTGATGGGTGGAAGGAAGAA 59.365 52.381 0.00 0.00 30.92 2.52
1223 2069 3.149981 GGTGGAAGGAAGAAGACAAAGG 58.850 50.000 0.00 0.00 0.00 3.11
1238 2084 2.106511 ACAAAGGTGCCTACATGTCTGT 59.893 45.455 0.00 0.00 39.49 3.41
1246 2092 2.675348 GCCTACATGTCTGTCTTCTTGC 59.325 50.000 0.00 0.00 36.79 4.01
1338 2184 4.579454 AGTTAGTTGTCTGTACAGCGAA 57.421 40.909 18.45 9.85 41.34 4.70
1343 2189 2.588027 TGTCTGTACAGCGAAACACA 57.412 45.000 18.45 12.79 0.00 3.72
1344 2190 3.106242 TGTCTGTACAGCGAAACACAT 57.894 42.857 18.45 0.00 0.00 3.21
1345 2191 4.245845 TGTCTGTACAGCGAAACACATA 57.754 40.909 18.45 0.00 0.00 2.29
1346 2192 3.985279 TGTCTGTACAGCGAAACACATAC 59.015 43.478 18.45 7.46 0.00 2.39
1347 2193 4.235360 GTCTGTACAGCGAAACACATACT 58.765 43.478 18.45 0.00 0.00 2.12
1348 2194 4.323868 GTCTGTACAGCGAAACACATACTC 59.676 45.833 18.45 0.00 0.00 2.59
1349 2195 3.581755 TGTACAGCGAAACACATACTCC 58.418 45.455 0.00 0.00 0.00 3.85
1350 2196 2.094762 ACAGCGAAACACATACTCCC 57.905 50.000 0.00 0.00 0.00 4.30
1351 2197 1.623811 ACAGCGAAACACATACTCCCT 59.376 47.619 0.00 0.00 0.00 4.20
1352 2198 2.271800 CAGCGAAACACATACTCCCTC 58.728 52.381 0.00 0.00 0.00 4.30
1353 2199 1.207329 AGCGAAACACATACTCCCTCC 59.793 52.381 0.00 0.00 0.00 4.30
1354 2200 1.922570 CGAAACACATACTCCCTCCG 58.077 55.000 0.00 0.00 0.00 4.63
1355 2201 1.203994 CGAAACACATACTCCCTCCGT 59.796 52.381 0.00 0.00 0.00 4.69
1356 2202 2.424601 CGAAACACATACTCCCTCCGTA 59.575 50.000 0.00 0.00 0.00 4.02
1357 2203 3.119388 CGAAACACATACTCCCTCCGTAA 60.119 47.826 0.00 0.00 0.00 3.18
1358 2204 4.618927 CGAAACACATACTCCCTCCGTAAA 60.619 45.833 0.00 0.00 0.00 2.01
1359 2205 3.881937 ACACATACTCCCTCCGTAAAC 57.118 47.619 0.00 0.00 0.00 2.01
1360 2206 3.438183 ACACATACTCCCTCCGTAAACT 58.562 45.455 0.00 0.00 0.00 2.66
1361 2207 4.603131 ACACATACTCCCTCCGTAAACTA 58.397 43.478 0.00 0.00 0.00 2.24
1362 2208 5.018809 ACACATACTCCCTCCGTAAACTAA 58.981 41.667 0.00 0.00 0.00 2.24
1363 2209 5.659971 ACACATACTCCCTCCGTAAACTAAT 59.340 40.000 0.00 0.00 0.00 1.73
1364 2210 6.835488 ACACATACTCCCTCCGTAAACTAATA 59.165 38.462 0.00 0.00 0.00 0.98
1365 2211 7.508296 ACACATACTCCCTCCGTAAACTAATAT 59.492 37.037 0.00 0.00 0.00 1.28
1366 2212 9.017509 CACATACTCCCTCCGTAAACTAATATA 57.982 37.037 0.00 0.00 0.00 0.86
1367 2213 9.592196 ACATACTCCCTCCGTAAACTAATATAA 57.408 33.333 0.00 0.00 0.00 0.98
1370 2216 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1371 2217 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
1372 2218 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
1373 2219 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
1374 2220 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
1375 2221 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
1425 2271 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
1444 2290 2.038164 GGAGTACCTTTCAGTCCGGTTT 59.962 50.000 0.00 0.00 32.36 3.27
1454 2300 2.915137 TCCGGTTTTTGGGGCTGC 60.915 61.111 0.00 0.00 0.00 5.25
1518 4212 0.179240 CAATGACGACTGCTTCACGC 60.179 55.000 0.00 0.00 39.77 5.34
1586 4280 3.325293 AGCACAGTCATAGTCCAAGTG 57.675 47.619 0.00 0.00 0.00 3.16
1596 4290 1.891919 GTCCAAGTGCCGCAGTCAA 60.892 57.895 0.00 0.00 0.00 3.18
1784 4872 4.995487 CACATCAAGATCGATGACATGGAT 59.005 41.667 12.24 12.24 44.67 3.41
1793 4881 4.215109 TCGATGACATGGATCCTTCTGTA 58.785 43.478 14.23 4.39 0.00 2.74
1808 4896 3.510388 TCTGTATTCGAGGCACTTCTG 57.490 47.619 0.00 0.00 41.55 3.02
1823 4911 4.872691 GCACTTCTGCACTTCATATACACT 59.127 41.667 0.00 0.00 43.62 3.55
1843 4931 1.285578 GATTCTCTGCCAAGCGACTC 58.714 55.000 0.00 0.00 0.00 3.36
1855 4943 1.081774 GCGACTCGGATCTGGATCG 60.082 63.158 18.58 18.58 38.69 3.69
1913 5001 1.215647 GTACGGACTGGACCAGCTG 59.784 63.158 21.95 19.57 34.37 4.24
2028 5116 3.260740 CTCAAGGATGCTTGTCTCAGAC 58.739 50.000 24.15 0.00 35.91 3.51
2063 5151 0.106708 AGGTGCTTCGAGCTGTCAAA 59.893 50.000 0.00 0.00 42.97 2.69
2108 5196 1.455217 AGCAAGCTGCCCATGGATC 60.455 57.895 15.22 5.06 46.52 3.36
2176 5271 2.094854 CAGTCTGGCTCTGGATTTTTGC 60.095 50.000 0.00 0.00 0.00 3.68
2179 5274 3.758554 GTCTGGCTCTGGATTTTTGCTTA 59.241 43.478 0.00 0.00 0.00 3.09
2192 5289 7.656948 TGGATTTTTGCTTAAAGTTTGGATCTG 59.343 33.333 0.00 0.00 0.00 2.90
2193 5290 6.843069 TTTTTGCTTAAAGTTTGGATCTGC 57.157 33.333 0.00 0.00 0.00 4.26
2197 5294 5.312895 TGCTTAAAGTTTGGATCTGCAGTA 58.687 37.500 14.67 0.48 0.00 2.74
2201 5298 4.357918 AAGTTTGGATCTGCAGTAGTGT 57.642 40.909 14.67 0.00 0.00 3.55
2202 5299 3.931578 AGTTTGGATCTGCAGTAGTGTC 58.068 45.455 14.67 5.56 0.00 3.67
2204 5301 1.195115 TGGATCTGCAGTAGTGTCCC 58.805 55.000 14.67 6.26 33.91 4.46
2207 5304 2.171448 GGATCTGCAGTAGTGTCCCATT 59.829 50.000 14.67 0.00 0.00 3.16
2228 5325 9.090692 CCCATTTTGATTTTCTTATCATGTGTC 57.909 33.333 0.00 0.00 34.67 3.67
2256 5355 1.939934 TCGGTTGCAGAACTGAACTTG 59.060 47.619 5.97 5.35 43.26 3.16
2262 5361 3.206150 TGCAGAACTGAACTTGTCTTCC 58.794 45.455 5.97 0.00 0.00 3.46
2274 5373 4.642429 ACTTGTCTTCCAGAATGTGTACC 58.358 43.478 0.00 0.00 0.00 3.34
2275 5374 3.695830 TGTCTTCCAGAATGTGTACCC 57.304 47.619 0.00 0.00 0.00 3.69
2324 5424 4.736126 TCTGAGAGATTTCGCATGGTTA 57.264 40.909 0.00 0.00 32.53 2.85
2343 5446 7.945033 TGGTTATTTCTTTCATTTCTGTTGC 57.055 32.000 0.00 0.00 0.00 4.17
2396 5500 6.365520 AGTGAACTTTCCTGTAGAACCAAAT 58.634 36.000 0.00 0.00 32.95 2.32
2398 5502 6.039382 GTGAACTTTCCTGTAGAACCAAATGT 59.961 38.462 0.00 0.00 32.95 2.71
2399 5503 7.227910 GTGAACTTTCCTGTAGAACCAAATGTA 59.772 37.037 0.00 0.00 32.95 2.29
2400 5504 7.444183 TGAACTTTCCTGTAGAACCAAATGTAG 59.556 37.037 0.00 0.00 32.95 2.74
2406 5511 6.043938 TCCTGTAGAACCAAATGTAGAAGGTT 59.956 38.462 0.00 0.00 46.39 3.50
2408 5513 7.308589 CCTGTAGAACCAAATGTAGAAGGTTTG 60.309 40.741 0.00 0.00 43.94 2.93
2411 5516 5.539955 AGAACCAAATGTAGAAGGTTTGCAT 59.460 36.000 0.00 0.00 43.94 3.96
2422 5527 3.354948 AGGTTTGCATGCTCTGACATA 57.645 42.857 20.33 0.00 0.00 2.29
2423 5528 3.689347 AGGTTTGCATGCTCTGACATAA 58.311 40.909 20.33 0.00 0.00 1.90
2425 5530 4.523943 AGGTTTGCATGCTCTGACATAAAA 59.476 37.500 20.33 4.58 0.00 1.52
2426 5531 5.186409 AGGTTTGCATGCTCTGACATAAAAT 59.814 36.000 20.33 0.00 0.00 1.82
2427 5532 5.290158 GGTTTGCATGCTCTGACATAAAATG 59.710 40.000 20.33 0.00 0.00 2.32
2428 5533 4.642445 TGCATGCTCTGACATAAAATGG 57.358 40.909 20.33 0.00 33.60 3.16
2452 5557 3.041946 ACTGGACTGAAGTTCTGAACCT 58.958 45.455 16.48 3.96 0.00 3.50
2455 5560 3.454447 TGGACTGAAGTTCTGAACCTGAA 59.546 43.478 16.48 0.49 0.00 3.02
2481 5586 0.976641 TGCTGTACCAGAGTCCCTTG 59.023 55.000 0.00 0.00 32.44 3.61
2491 5596 0.957888 GAGTCCCTTGCACTTCCAGC 60.958 60.000 0.00 0.00 0.00 4.85
2497 5602 1.667724 CCTTGCACTTCCAGCTATTCG 59.332 52.381 0.00 0.00 0.00 3.34
2505 5611 4.690748 CACTTCCAGCTATTCGAAGTTTCA 59.309 41.667 3.35 0.00 42.71 2.69
2510 5616 4.260538 CCAGCTATTCGAAGTTTCATCTGC 60.261 45.833 3.35 0.00 0.00 4.26
2521 5627 3.706086 AGTTTCATCTGCCTGGTTTTGTT 59.294 39.130 0.00 0.00 0.00 2.83
2533 5639 2.896685 TGGTTTTGTTATCCAGGCCAAG 59.103 45.455 5.01 0.00 0.00 3.61
2709 5842 5.766174 TGGTTGTTAGTCCAAGTGTATTTCC 59.234 40.000 0.00 0.00 0.00 3.13
2850 5986 2.841881 TCACCCCCTACAATGTAAGGAC 59.158 50.000 9.53 0.00 34.58 3.85
2956 6105 6.039605 TCAACATTCTTCTTCTTGTCATGCAA 59.960 34.615 0.00 3.18 35.50 4.08
3118 6303 7.499895 AGTTTCTTGCAAACCAATGAAATCAAT 59.500 29.630 11.12 0.00 35.30 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.597637 CGTGTGTGGAGGTGTGTCTC 60.598 60.000 0.00 0.00 0.00 3.36
5 6 1.441729 CGTGTGTGGAGGTGTGTCT 59.558 57.895 0.00 0.00 0.00 3.41
6 7 2.244651 GCGTGTGTGGAGGTGTGTC 61.245 63.158 0.00 0.00 0.00 3.67
7 8 1.396607 TAGCGTGTGTGGAGGTGTGT 61.397 55.000 0.00 0.00 0.00 3.72
8 9 0.249699 TTAGCGTGTGTGGAGGTGTG 60.250 55.000 0.00 0.00 0.00 3.82
9 10 0.466543 TTTAGCGTGTGTGGAGGTGT 59.533 50.000 0.00 0.00 0.00 4.16
10 11 0.865769 GTTTAGCGTGTGTGGAGGTG 59.134 55.000 0.00 0.00 0.00 4.00
11 12 0.466543 TGTTTAGCGTGTGTGGAGGT 59.533 50.000 0.00 0.00 0.00 3.85
12 13 0.865769 GTGTTTAGCGTGTGTGGAGG 59.134 55.000 0.00 0.00 0.00 4.30
13 14 1.260561 GTGTGTTTAGCGTGTGTGGAG 59.739 52.381 0.00 0.00 0.00 3.86
14 15 1.292061 GTGTGTTTAGCGTGTGTGGA 58.708 50.000 0.00 0.00 0.00 4.02
15 16 0.306533 GGTGTGTTTAGCGTGTGTGG 59.693 55.000 0.00 0.00 0.00 4.17
16 17 1.010580 TGGTGTGTTTAGCGTGTGTG 58.989 50.000 0.00 0.00 0.00 3.82
17 18 1.961793 ATGGTGTGTTTAGCGTGTGT 58.038 45.000 0.00 0.00 0.00 3.72
18 19 2.604373 CCAATGGTGTGTTTAGCGTGTG 60.604 50.000 0.00 0.00 0.00 3.82
19 20 1.606668 CCAATGGTGTGTTTAGCGTGT 59.393 47.619 0.00 0.00 0.00 4.49
20 21 1.068610 CCCAATGGTGTGTTTAGCGTG 60.069 52.381 0.00 0.00 0.00 5.34
21 22 1.202830 TCCCAATGGTGTGTTTAGCGT 60.203 47.619 0.00 0.00 0.00 5.07
22 23 1.199097 GTCCCAATGGTGTGTTTAGCG 59.801 52.381 0.00 0.00 0.00 4.26
23 24 1.199097 CGTCCCAATGGTGTGTTTAGC 59.801 52.381 0.00 0.00 0.00 3.09
24 25 2.742053 CTCGTCCCAATGGTGTGTTTAG 59.258 50.000 0.00 0.00 0.00 1.85
25 26 2.551287 CCTCGTCCCAATGGTGTGTTTA 60.551 50.000 0.00 0.00 0.00 2.01
26 27 1.604604 CTCGTCCCAATGGTGTGTTT 58.395 50.000 0.00 0.00 0.00 2.83
27 28 0.250727 CCTCGTCCCAATGGTGTGTT 60.251 55.000 0.00 0.00 0.00 3.32
28 29 1.125093 TCCTCGTCCCAATGGTGTGT 61.125 55.000 0.00 0.00 0.00 3.72
29 30 0.253044 ATCCTCGTCCCAATGGTGTG 59.747 55.000 0.00 0.00 0.00 3.82
30 31 1.762957 CTATCCTCGTCCCAATGGTGT 59.237 52.381 0.00 0.00 0.00 4.16
31 32 2.039418 TCTATCCTCGTCCCAATGGTG 58.961 52.381 0.00 0.00 0.00 4.17
32 33 2.471815 TCTATCCTCGTCCCAATGGT 57.528 50.000 0.00 0.00 0.00 3.55
33 34 3.071602 ACATTCTATCCTCGTCCCAATGG 59.928 47.826 0.00 0.00 0.00 3.16
34 35 4.060900 CACATTCTATCCTCGTCCCAATG 58.939 47.826 0.00 0.00 0.00 2.82
35 36 3.071602 CCACATTCTATCCTCGTCCCAAT 59.928 47.826 0.00 0.00 0.00 3.16
36 37 2.434336 CCACATTCTATCCTCGTCCCAA 59.566 50.000 0.00 0.00 0.00 4.12
37 38 2.039418 CCACATTCTATCCTCGTCCCA 58.961 52.381 0.00 0.00 0.00 4.37
38 39 1.344763 CCCACATTCTATCCTCGTCCC 59.655 57.143 0.00 0.00 0.00 4.46
39 40 2.297597 CTCCCACATTCTATCCTCGTCC 59.702 54.545 0.00 0.00 0.00 4.79
40 41 2.288518 GCTCCCACATTCTATCCTCGTC 60.289 54.545 0.00 0.00 0.00 4.20
41 42 1.689273 GCTCCCACATTCTATCCTCGT 59.311 52.381 0.00 0.00 0.00 4.18
42 43 1.001406 GGCTCCCACATTCTATCCTCG 59.999 57.143 0.00 0.00 0.00 4.63
43 44 2.334023 AGGCTCCCACATTCTATCCTC 58.666 52.381 0.00 0.00 0.00 3.71
44 45 2.503869 AGGCTCCCACATTCTATCCT 57.496 50.000 0.00 0.00 0.00 3.24
45 46 3.243724 ACTAGGCTCCCACATTCTATCC 58.756 50.000 0.00 0.00 0.00 2.59
46 47 5.046950 CCTTACTAGGCTCCCACATTCTATC 60.047 48.000 0.00 0.00 33.99 2.08
47 48 4.841246 CCTTACTAGGCTCCCACATTCTAT 59.159 45.833 0.00 0.00 33.99 1.98
48 49 4.223953 CCTTACTAGGCTCCCACATTCTA 58.776 47.826 0.00 0.00 33.99 2.10
49 50 3.041946 CCTTACTAGGCTCCCACATTCT 58.958 50.000 0.00 0.00 33.99 2.40
50 51 2.104963 CCCTTACTAGGCTCCCACATTC 59.895 54.545 0.00 0.00 40.50 2.67
51 52 2.127708 CCCTTACTAGGCTCCCACATT 58.872 52.381 0.00 0.00 40.50 2.71
52 53 1.294068 TCCCTTACTAGGCTCCCACAT 59.706 52.381 0.00 0.00 40.50 3.21
53 54 0.714180 TCCCTTACTAGGCTCCCACA 59.286 55.000 0.00 0.00 40.50 4.17
54 55 1.121378 GTCCCTTACTAGGCTCCCAC 58.879 60.000 0.00 0.00 40.50 4.61
55 56 0.714180 TGTCCCTTACTAGGCTCCCA 59.286 55.000 0.00 0.00 40.50 4.37
56 57 1.972075 GATGTCCCTTACTAGGCTCCC 59.028 57.143 0.00 0.00 40.50 4.30
57 58 1.614413 CGATGTCCCTTACTAGGCTCC 59.386 57.143 0.00 0.00 40.50 4.70
58 59 1.000052 GCGATGTCCCTTACTAGGCTC 60.000 57.143 0.00 0.00 40.50 4.70
59 60 1.041437 GCGATGTCCCTTACTAGGCT 58.959 55.000 0.00 0.00 40.50 4.58
60 61 0.318784 CGCGATGTCCCTTACTAGGC 60.319 60.000 0.00 0.00 40.50 3.93
61 62 0.314302 CCGCGATGTCCCTTACTAGG 59.686 60.000 8.23 0.00 41.60 3.02
62 63 0.318784 GCCGCGATGTCCCTTACTAG 60.319 60.000 8.23 0.00 0.00 2.57
63 64 1.737816 GCCGCGATGTCCCTTACTA 59.262 57.895 8.23 0.00 0.00 1.82
64 65 2.499685 GCCGCGATGTCCCTTACT 59.500 61.111 8.23 0.00 0.00 2.24
65 66 2.588034 GGCCGCGATGTCCCTTAC 60.588 66.667 8.23 0.00 0.00 2.34
66 67 4.215742 CGGCCGCGATGTCCCTTA 62.216 66.667 14.67 0.00 0.00 2.69
82 83 3.443045 GATTGGGGCTGTGTGGCG 61.443 66.667 0.00 0.00 42.84 5.69
83 84 1.470996 TTTGATTGGGGCTGTGTGGC 61.471 55.000 0.00 0.00 40.96 5.01
84 85 0.604578 CTTTGATTGGGGCTGTGTGG 59.395 55.000 0.00 0.00 0.00 4.17
85 86 1.270550 GTCTTTGATTGGGGCTGTGTG 59.729 52.381 0.00 0.00 0.00 3.82
86 87 1.133513 TGTCTTTGATTGGGGCTGTGT 60.134 47.619 0.00 0.00 0.00 3.72
87 88 1.619654 TGTCTTTGATTGGGGCTGTG 58.380 50.000 0.00 0.00 0.00 3.66
88 89 2.564062 CAATGTCTTTGATTGGGGCTGT 59.436 45.455 0.00 0.00 37.53 4.40
89 90 2.827322 TCAATGTCTTTGATTGGGGCTG 59.173 45.455 0.00 0.00 39.44 4.85
90 91 3.173953 TCAATGTCTTTGATTGGGGCT 57.826 42.857 0.00 0.00 39.44 5.19
91 92 3.588955 GTTCAATGTCTTTGATTGGGGC 58.411 45.455 2.27 0.00 43.73 5.80
92 93 3.834231 AGGTTCAATGTCTTTGATTGGGG 59.166 43.478 2.27 0.00 43.73 4.96
93 94 6.015519 TGTTAGGTTCAATGTCTTTGATTGGG 60.016 38.462 2.27 0.00 43.73 4.12
94 95 6.980593 TGTTAGGTTCAATGTCTTTGATTGG 58.019 36.000 2.27 0.00 43.73 3.16
95 96 8.352201 TCTTGTTAGGTTCAATGTCTTTGATTG 58.648 33.333 2.27 0.00 43.73 2.67
96 97 8.463930 TCTTGTTAGGTTCAATGTCTTTGATT 57.536 30.769 2.27 0.00 43.73 2.57
97 98 8.352942 GTTCTTGTTAGGTTCAATGTCTTTGAT 58.647 33.333 2.27 0.00 43.73 2.57
98 99 7.466725 CGTTCTTGTTAGGTTCAATGTCTTTGA 60.467 37.037 0.00 0.00 42.62 2.69
99 100 6.632834 CGTTCTTGTTAGGTTCAATGTCTTTG 59.367 38.462 0.00 0.00 36.61 2.77
100 101 6.540914 TCGTTCTTGTTAGGTTCAATGTCTTT 59.459 34.615 0.00 0.00 0.00 2.52
101 102 6.053005 TCGTTCTTGTTAGGTTCAATGTCTT 58.947 36.000 0.00 0.00 0.00 3.01
102 103 5.607477 TCGTTCTTGTTAGGTTCAATGTCT 58.393 37.500 0.00 0.00 0.00 3.41
103 104 5.694910 TCTCGTTCTTGTTAGGTTCAATGTC 59.305 40.000 0.00 0.00 0.00 3.06
104 105 5.607477 TCTCGTTCTTGTTAGGTTCAATGT 58.393 37.500 0.00 0.00 0.00 2.71
105 106 6.363473 GTTCTCGTTCTTGTTAGGTTCAATG 58.637 40.000 0.00 0.00 0.00 2.82
106 107 5.176958 CGTTCTCGTTCTTGTTAGGTTCAAT 59.823 40.000 0.00 0.00 0.00 2.57
107 108 4.505191 CGTTCTCGTTCTTGTTAGGTTCAA 59.495 41.667 0.00 0.00 0.00 2.69
108 109 4.046462 CGTTCTCGTTCTTGTTAGGTTCA 58.954 43.478 0.00 0.00 0.00 3.18
109 110 3.427863 CCGTTCTCGTTCTTGTTAGGTTC 59.572 47.826 0.00 0.00 35.01 3.62
110 111 3.387397 CCGTTCTCGTTCTTGTTAGGTT 58.613 45.455 0.00 0.00 35.01 3.50
111 112 2.288640 CCCGTTCTCGTTCTTGTTAGGT 60.289 50.000 0.00 0.00 35.01 3.08
112 113 2.334838 CCCGTTCTCGTTCTTGTTAGG 58.665 52.381 0.00 0.00 35.01 2.69
113 114 1.725164 GCCCGTTCTCGTTCTTGTTAG 59.275 52.381 0.00 0.00 35.01 2.34
114 115 1.606224 GGCCCGTTCTCGTTCTTGTTA 60.606 52.381 0.00 0.00 35.01 2.41
115 116 0.883370 GGCCCGTTCTCGTTCTTGTT 60.883 55.000 0.00 0.00 35.01 2.83
116 117 1.301479 GGCCCGTTCTCGTTCTTGT 60.301 57.895 0.00 0.00 35.01 3.16
117 118 2.033194 GGGCCCGTTCTCGTTCTTG 61.033 63.158 5.69 0.00 35.01 3.02
118 119 2.346365 GGGCCCGTTCTCGTTCTT 59.654 61.111 5.69 0.00 35.01 2.52
119 120 3.703127 GGGGCCCGTTCTCGTTCT 61.703 66.667 17.79 0.00 35.01 3.01
120 121 3.660732 GAGGGGCCCGTTCTCGTTC 62.661 68.421 20.17 2.10 35.01 3.95
121 122 3.703127 GAGGGGCCCGTTCTCGTT 61.703 66.667 20.17 0.00 35.01 3.85
142 143 2.365635 ATCTCAGTCCCCCACCGG 60.366 66.667 0.00 0.00 0.00 5.28
143 144 2.435693 GGATCTCAGTCCCCCACCG 61.436 68.421 0.00 0.00 31.82 4.94
144 145 1.003573 AGGATCTCAGTCCCCCACC 59.996 63.158 0.00 0.00 39.17 4.61
145 146 1.051556 GGAGGATCTCAGTCCCCCAC 61.052 65.000 0.00 0.00 36.25 4.61
146 147 1.314867 GGAGGATCTCAGTCCCCCA 59.685 63.158 0.00 0.00 36.25 4.96
147 148 1.834822 CGGAGGATCTCAGTCCCCC 60.835 68.421 0.00 0.00 39.17 5.40
148 149 2.503382 GCGGAGGATCTCAGTCCCC 61.503 68.421 0.00 0.00 39.17 4.81
149 150 1.758514 TGCGGAGGATCTCAGTCCC 60.759 63.158 0.00 0.00 39.17 4.46
150 151 1.439644 GTGCGGAGGATCTCAGTCC 59.560 63.158 0.00 0.00 38.62 3.85
151 152 1.040339 AGGTGCGGAGGATCTCAGTC 61.040 60.000 0.00 0.00 28.04 3.51
152 153 1.000993 AGGTGCGGAGGATCTCAGT 59.999 57.895 0.00 0.00 28.04 3.41
153 154 3.947173 AGGTGCGGAGGATCTCAG 58.053 61.111 0.00 0.00 28.04 3.35
157 158 1.070445 CATGGAGGTGCGGAGGATC 59.930 63.158 0.00 0.00 0.00 3.36
158 159 2.446848 CCATGGAGGTGCGGAGGAT 61.447 63.158 5.56 0.00 0.00 3.24
159 160 3.083349 CCATGGAGGTGCGGAGGA 61.083 66.667 5.56 0.00 0.00 3.71
160 161 4.864334 GCCATGGAGGTGCGGAGG 62.864 72.222 18.40 0.00 40.61 4.30
161 162 4.864334 GGCCATGGAGGTGCGGAG 62.864 72.222 18.40 0.00 40.61 4.63
162 163 3.993865 TAGGCCATGGAGGTGCGGA 62.994 63.158 18.40 0.00 40.61 5.54
163 164 3.466791 CTAGGCCATGGAGGTGCGG 62.467 68.421 18.40 0.00 40.61 5.69
164 165 2.109799 CTAGGCCATGGAGGTGCG 59.890 66.667 18.40 0.00 40.61 5.34
165 166 1.449353 CTCTAGGCCATGGAGGTGC 59.551 63.158 18.40 0.00 40.61 5.01
177 178 1.274728 CCATCTTCGATGGCCTCTAGG 59.725 57.143 3.32 0.00 38.53 3.02
178 179 1.274728 CCCATCTTCGATGGCCTCTAG 59.725 57.143 15.70 0.19 37.85 2.43
179 180 1.342074 CCCATCTTCGATGGCCTCTA 58.658 55.000 15.70 0.00 37.85 2.43
180 181 1.414061 CCCCATCTTCGATGGCCTCT 61.414 60.000 15.70 0.00 37.85 3.69
181 182 1.072159 CCCCATCTTCGATGGCCTC 59.928 63.158 15.70 0.00 37.85 4.70
182 183 3.125376 GCCCCATCTTCGATGGCCT 62.125 63.158 15.70 0.00 37.85 5.19
183 184 2.595754 GCCCCATCTTCGATGGCC 60.596 66.667 15.70 0.00 37.85 5.36
184 185 2.974698 CGCCCCATCTTCGATGGC 60.975 66.667 15.70 6.31 37.85 4.40
185 186 2.281070 CCGCCCCATCTTCGATGG 60.281 66.667 14.48 14.48 38.88 3.51
186 187 1.595382 GTCCGCCCCATCTTCGATG 60.595 63.158 0.00 0.00 0.00 3.84
187 188 2.808206 GGTCCGCCCCATCTTCGAT 61.808 63.158 0.00 0.00 0.00 3.59
188 189 3.467226 GGTCCGCCCCATCTTCGA 61.467 66.667 0.00 0.00 0.00 3.71
198 199 4.966787 TTGCCAAGTGGGTCCGCC 62.967 66.667 0.00 0.00 39.65 6.13
199 200 2.676471 ATTGCCAAGTGGGTCCGC 60.676 61.111 0.00 0.00 39.65 5.54
200 201 0.680921 ATGATTGCCAAGTGGGTCCG 60.681 55.000 0.00 0.00 39.65 4.79
201 202 2.435372 TATGATTGCCAAGTGGGTCC 57.565 50.000 0.00 0.00 39.65 4.46
202 203 3.290710 ACATATGATTGCCAAGTGGGTC 58.709 45.455 10.38 0.00 39.65 4.46
203 204 3.290710 GACATATGATTGCCAAGTGGGT 58.709 45.455 10.38 0.00 39.65 4.51
204 205 2.291465 CGACATATGATTGCCAAGTGGG 59.709 50.000 10.38 0.00 40.85 4.61
205 206 2.945008 ACGACATATGATTGCCAAGTGG 59.055 45.455 10.38 0.00 38.53 4.00
206 207 4.142622 ACAACGACATATGATTGCCAAGTG 60.143 41.667 10.38 0.00 0.00 3.16
218 219 3.184379 GCATGTGCGATACAACGACATAT 59.816 43.478 0.00 0.00 43.77 1.78
220 221 1.327460 GCATGTGCGATACAACGACAT 59.673 47.619 0.00 0.00 43.77 3.06
221 222 0.718904 GCATGTGCGATACAACGACA 59.281 50.000 0.00 0.00 43.77 4.35
222 223 0.026285 GGCATGTGCGATACAACGAC 59.974 55.000 0.00 0.00 43.77 4.34
223 224 0.390472 TGGCATGTGCGATACAACGA 60.390 50.000 0.00 0.00 43.77 3.85
224 225 0.445829 TTGGCATGTGCGATACAACG 59.554 50.000 0.00 0.00 43.77 4.10
225 226 2.097304 TGATTGGCATGTGCGATACAAC 59.903 45.455 0.00 0.00 43.77 3.32
264 265 8.183536 TGTTCATGATTGTGCTATGTGTTTATC 58.816 33.333 0.00 0.00 0.00 1.75
274 275 7.446001 TGTTATTGTGTTCATGATTGTGCTA 57.554 32.000 0.00 0.00 0.00 3.49
303 304 9.280456 AGTTTCTCTCCCTATATCTGGTTTTAA 57.720 33.333 0.00 0.00 0.00 1.52
305 306 7.403231 TGAGTTTCTCTCCCTATATCTGGTTTT 59.597 37.037 0.00 0.00 42.12 2.43
310 311 6.074648 ACCTGAGTTTCTCTCCCTATATCTG 58.925 44.000 0.00 0.00 42.12 2.90
314 315 8.855804 AAAATACCTGAGTTTCTCTCCCTATA 57.144 34.615 0.00 0.00 42.12 1.31
336 337 8.974060 ACGCCAAGATTATAAGGAAGATAAAA 57.026 30.769 0.00 0.00 0.00 1.52
359 652 6.842163 AGGCAATGAGTTTTAATCTTGTACG 58.158 36.000 0.00 0.00 0.00 3.67
394 687 1.593006 CGCGTCGCTCTTTGGAAATAT 59.407 47.619 16.36 0.00 0.00 1.28
395 688 0.996462 CGCGTCGCTCTTTGGAAATA 59.004 50.000 16.36 0.00 0.00 1.40
399 692 4.735132 CCCGCGTCGCTCTTTGGA 62.735 66.667 16.36 0.00 0.00 3.53
401 694 3.479269 GACCCGCGTCGCTCTTTG 61.479 66.667 16.36 0.00 0.00 2.77
402 695 3.916392 CTGACCCGCGTCGCTCTTT 62.916 63.158 16.36 0.00 42.37 2.52
405 698 4.194720 ATCTGACCCGCGTCGCTC 62.195 66.667 16.36 6.84 42.37 5.03
408 701 3.518998 AGGATCTGACCCGCGTCG 61.519 66.667 4.92 0.00 42.37 5.12
409 702 1.945354 TTCAGGATCTGACCCGCGTC 61.945 60.000 4.92 0.00 40.46 5.19
410 703 1.949847 CTTCAGGATCTGACCCGCGT 61.950 60.000 4.92 0.00 40.46 6.01
412 705 1.144936 CCTTCAGGATCTGACCCGC 59.855 63.158 0.00 0.00 40.46 6.13
429 1207 3.447944 AGGAATTCAGTCGGAAGTAGTCC 59.552 47.826 7.93 0.00 43.90 3.85
430 1208 4.158025 TGAGGAATTCAGTCGGAAGTAGTC 59.842 45.833 7.93 0.00 39.30 2.59
435 1213 5.239525 AGTTTTTGAGGAATTCAGTCGGAAG 59.760 40.000 7.93 0.00 39.30 3.46
444 1222 7.750903 CAGTCGGAAATAGTTTTTGAGGAATTC 59.249 37.037 0.00 0.00 0.00 2.17
445 1223 7.447238 TCAGTCGGAAATAGTTTTTGAGGAATT 59.553 33.333 0.00 0.00 0.00 2.17
446 1224 6.940298 TCAGTCGGAAATAGTTTTTGAGGAAT 59.060 34.615 0.00 0.00 0.00 3.01
447 1225 6.292923 TCAGTCGGAAATAGTTTTTGAGGAA 58.707 36.000 0.00 0.00 0.00 3.36
448 1226 5.860611 TCAGTCGGAAATAGTTTTTGAGGA 58.139 37.500 0.00 0.00 0.00 3.71
449 1227 6.554334 TTCAGTCGGAAATAGTTTTTGAGG 57.446 37.500 0.00 0.00 30.98 3.86
452 1230 7.593825 AGGAATTCAGTCGGAAATAGTTTTTG 58.406 34.615 7.93 0.00 39.39 2.44
453 1231 7.447238 TGAGGAATTCAGTCGGAAATAGTTTTT 59.553 33.333 7.93 0.00 39.39 1.94
454 1232 6.940298 TGAGGAATTCAGTCGGAAATAGTTTT 59.060 34.615 7.93 0.00 39.39 2.43
457 1235 5.677319 TGAGGAATTCAGTCGGAAATAGT 57.323 39.130 7.93 0.00 39.39 2.12
458 1236 6.985188 TTTGAGGAATTCAGTCGGAAATAG 57.015 37.500 7.93 0.00 39.39 1.73
459 1237 7.229707 TGTTTTTGAGGAATTCAGTCGGAAATA 59.770 33.333 7.93 4.64 39.39 1.40
461 1239 5.358442 TGTTTTTGAGGAATTCAGTCGGAAA 59.642 36.000 7.93 6.16 39.39 3.13
462 1240 4.884744 TGTTTTTGAGGAATTCAGTCGGAA 59.115 37.500 7.93 0.66 40.46 4.30
463 1241 4.456535 TGTTTTTGAGGAATTCAGTCGGA 58.543 39.130 7.93 0.00 37.07 4.55
464 1242 4.829064 TGTTTTTGAGGAATTCAGTCGG 57.171 40.909 7.93 0.00 37.07 4.79
465 1243 4.618489 GCATGTTTTTGAGGAATTCAGTCG 59.382 41.667 7.93 0.00 37.07 4.18
467 1245 5.563475 CGAGCATGTTTTTGAGGAATTCAGT 60.563 40.000 7.93 0.00 37.07 3.41
468 1246 4.855388 CGAGCATGTTTTTGAGGAATTCAG 59.145 41.667 7.93 0.00 37.07 3.02
470 1248 4.798574 ACGAGCATGTTTTTGAGGAATTC 58.201 39.130 0.00 0.00 0.00 2.17
471 1249 4.853924 ACGAGCATGTTTTTGAGGAATT 57.146 36.364 0.00 0.00 0.00 2.17
472 1250 4.549458 CAACGAGCATGTTTTTGAGGAAT 58.451 39.130 0.00 0.00 0.00 3.01
473 1251 3.795150 GCAACGAGCATGTTTTTGAGGAA 60.795 43.478 8.46 0.00 44.79 3.36
474 1252 2.287547 GCAACGAGCATGTTTTTGAGGA 60.288 45.455 8.46 0.00 44.79 3.71
475 1253 2.053627 GCAACGAGCATGTTTTTGAGG 58.946 47.619 8.46 0.00 44.79 3.86
487 1265 0.591170 TTGCTAGGTTTGCAACGAGC 59.409 50.000 13.10 13.10 44.24 5.03
488 1266 1.400242 GCTTGCTAGGTTTGCAACGAG 60.400 52.381 0.00 0.00 44.24 4.18
489 1267 0.591170 GCTTGCTAGGTTTGCAACGA 59.409 50.000 0.00 0.00 44.24 3.85
491 1269 1.068264 GGAGCTTGCTAGGTTTGCAAC 60.068 52.381 0.00 0.00 44.24 4.17
493 1271 0.110295 TGGAGCTTGCTAGGTTTGCA 59.890 50.000 0.48 0.00 38.80 4.08
495 1273 3.507233 TGATTTGGAGCTTGCTAGGTTTG 59.493 43.478 0.48 0.00 30.79 2.93
496 1274 3.766545 TGATTTGGAGCTTGCTAGGTTT 58.233 40.909 0.48 0.00 30.79 3.27
497 1275 3.439857 TGATTTGGAGCTTGCTAGGTT 57.560 42.857 0.48 0.00 30.79 3.50
498 1276 3.054139 TGATGATTTGGAGCTTGCTAGGT 60.054 43.478 0.00 0.00 34.07 3.08
499 1277 3.548770 TGATGATTTGGAGCTTGCTAGG 58.451 45.455 0.00 0.00 0.00 3.02
500 1278 4.579340 ACATGATGATTTGGAGCTTGCTAG 59.421 41.667 0.00 0.00 0.00 3.42
503 1281 3.795623 ACATGATGATTTGGAGCTTGC 57.204 42.857 0.00 0.00 0.00 4.01
504 1282 5.575606 GTCAAACATGATGATTTGGAGCTTG 59.424 40.000 15.36 0.00 36.62 4.01
505 1283 5.620654 CGTCAAACATGATGATTTGGAGCTT 60.621 40.000 15.36 0.00 36.62 3.74
506 1284 4.142534 CGTCAAACATGATGATTTGGAGCT 60.143 41.667 15.36 0.00 36.62 4.09
615 1435 3.181513 CCTGACGATCAAAATCAGCACTG 60.182 47.826 0.00 0.00 38.84 3.66
654 1477 6.096695 TGTTTCAGCAGTTTAAAACTCAACC 58.903 36.000 0.00 0.00 40.46 3.77
665 1490 7.271511 TGTTAATTCCAATGTTTCAGCAGTTT 58.728 30.769 0.00 0.00 0.00 2.66
668 1493 5.346822 GCTGTTAATTCCAATGTTTCAGCAG 59.653 40.000 0.00 0.00 43.15 4.24
672 1497 5.689514 CGTTGCTGTTAATTCCAATGTTTCA 59.310 36.000 0.00 0.00 0.00 2.69
694 1519 5.451520 CCTTGTATTTATCGGGAAGAGACGT 60.452 44.000 0.00 0.00 0.00 4.34
699 1524 4.703897 CTGCCTTGTATTTATCGGGAAGA 58.296 43.478 0.00 0.00 0.00 2.87
706 1531 4.843220 ATGCTGCTGCCTTGTATTTATC 57.157 40.909 13.47 0.00 38.71 1.75
720 1545 4.339872 TGTTTCAAATTCCAATGCTGCT 57.660 36.364 0.00 0.00 0.00 4.24
741 1569 2.480853 TAGACGACGGTGCATGCGTT 62.481 55.000 14.09 0.00 37.07 4.84
767 1595 1.335872 CGTTGAACAAGTTCCCATGCC 60.336 52.381 10.19 0.00 38.77 4.40
840 1668 6.038825 CAGTACTACTACATGACTCAGGAAGG 59.961 46.154 0.00 0.00 0.00 3.46
859 1687 8.295288 GGTACGTGCATATATAAACTCAGTACT 58.705 37.037 5.86 0.00 32.67 2.73
860 1688 7.540055 GGGTACGTGCATATATAAACTCAGTAC 59.460 40.741 5.86 0.00 0.00 2.73
861 1689 7.309377 GGGGTACGTGCATATATAAACTCAGTA 60.309 40.741 5.86 0.00 0.00 2.74
862 1690 6.453092 GGGTACGTGCATATATAAACTCAGT 58.547 40.000 5.86 0.00 0.00 3.41
901 1729 2.562912 CATGGCGTGGAGTGCAAC 59.437 61.111 0.00 0.00 0.00 4.17
936 1764 1.558756 CCTGGAGGAGTGCTTCAGAAT 59.441 52.381 20.99 0.00 37.39 2.40
938 1766 0.178921 ACCTGGAGGAGTGCTTCAGA 60.179 55.000 20.99 0.00 38.94 3.27
945 1773 0.250513 GGCTGTAACCTGGAGGAGTG 59.749 60.000 0.00 0.00 38.94 3.51
969 1815 0.526211 GAATGAAACGGAGGTTGGGC 59.474 55.000 0.00 0.00 36.25 5.36
996 1842 2.677524 GAGCTGTTGGCCATGGCA 60.678 61.111 36.56 20.63 44.11 4.92
1020 1866 3.308053 CGGATATGTGCTTGTTGACAGAG 59.692 47.826 0.00 0.00 0.00 3.35
1075 1921 3.670377 GAAGTTGTGGGCGGTGGC 61.670 66.667 0.00 0.00 38.90 5.01
1212 2058 3.073062 ACATGTAGGCACCTTTGTCTTCT 59.927 43.478 0.00 0.00 39.02 2.85
1215 2061 2.639839 AGACATGTAGGCACCTTTGTCT 59.360 45.455 17.29 17.29 41.87 3.41
1223 2069 3.601443 AGAAGACAGACATGTAGGCAC 57.399 47.619 0.00 0.00 40.68 5.01
1238 2084 0.321034 ACTGCAGATGCGCAAGAAGA 60.321 50.000 23.35 0.00 45.83 2.87
1246 2092 0.097674 GTTGGCTTACTGCAGATGCG 59.902 55.000 23.35 6.71 45.83 4.73
1290 2136 6.423182 TCCATCTTTCTCCAATAAACCGAAT 58.577 36.000 0.00 0.00 0.00 3.34
1294 2140 7.896811 ACTTTTCCATCTTTCTCCAATAAACC 58.103 34.615 0.00 0.00 0.00 3.27
1338 2184 3.836562 AGTTTACGGAGGGAGTATGTGTT 59.163 43.478 0.00 0.00 0.00 3.32
1344 2190 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
1345 2191 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
1346 2192 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
1347 2193 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
1348 2194 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
1349 2195 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
1399 2245 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
1400 2246 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
1401 2247 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1407 2253 9.503369 AAAGGTACTCCCTCTGTAAACTAATAT 57.497 33.333 0.00 0.00 45.47 1.28
1408 2254 8.906238 AAAGGTACTCCCTCTGTAAACTAATA 57.094 34.615 0.00 0.00 45.47 0.98
1409 2255 7.456902 TGAAAGGTACTCCCTCTGTAAACTAAT 59.543 37.037 0.00 0.00 45.47 1.73
1410 2256 6.783977 TGAAAGGTACTCCCTCTGTAAACTAA 59.216 38.462 0.00 0.00 45.47 2.24
1411 2257 6.317312 TGAAAGGTACTCCCTCTGTAAACTA 58.683 40.000 0.00 0.00 45.47 2.24
1412 2258 5.152934 TGAAAGGTACTCCCTCTGTAAACT 58.847 41.667 0.00 0.00 45.47 2.66
1413 2259 5.011840 ACTGAAAGGTACTCCCTCTGTAAAC 59.988 44.000 0.00 0.00 45.47 2.01
1414 2260 5.152934 ACTGAAAGGTACTCCCTCTGTAAA 58.847 41.667 0.00 0.00 45.47 2.01
1415 2261 4.748701 ACTGAAAGGTACTCCCTCTGTAA 58.251 43.478 0.00 0.00 45.47 2.41
1416 2262 4.342359 GACTGAAAGGTACTCCCTCTGTA 58.658 47.826 0.00 0.00 45.47 2.74
1417 2263 3.166679 GACTGAAAGGTACTCCCTCTGT 58.833 50.000 0.00 0.00 45.47 3.41
1418 2264 2.498078 GGACTGAAAGGTACTCCCTCTG 59.502 54.545 0.00 0.00 45.47 3.35
1419 2265 2.822697 GGACTGAAAGGTACTCCCTCT 58.177 52.381 0.00 0.00 45.47 3.69
1420 2266 1.477295 CGGACTGAAAGGTACTCCCTC 59.523 57.143 0.00 0.00 45.47 4.30
1422 2268 0.535797 CCGGACTGAAAGGTACTCCC 59.464 60.000 0.00 0.00 38.49 4.30
1423 2269 1.264295 ACCGGACTGAAAGGTACTCC 58.736 55.000 9.46 0.00 38.49 3.85
1424 2270 3.397849 AAACCGGACTGAAAGGTACTC 57.602 47.619 9.46 0.00 38.49 2.59
1454 2300 4.662278 TGGACTTCTCAATAAACTTGGGG 58.338 43.478 0.00 0.00 0.00 4.96
1518 4212 1.157870 ACGGTCAAAACGCACCTGAG 61.158 55.000 0.00 0.00 34.00 3.35
1596 4290 1.544724 ACAAAGTGTGTGTGCAGGTT 58.455 45.000 0.00 0.00 39.72 3.50
1625 4319 0.745845 CCATGCCTTCTCCGTCCTTG 60.746 60.000 0.00 0.00 0.00 3.61
1752 4840 3.374988 TCGATCTTGATGTGTTTCATGGC 59.625 43.478 0.00 0.00 36.83 4.40
1784 4872 2.457598 AGTGCCTCGAATACAGAAGGA 58.542 47.619 0.00 0.00 0.00 3.36
1808 4896 6.073873 GCAGAGAATCAGTGTATATGAAGTGC 60.074 42.308 0.00 0.00 37.82 4.40
1823 4911 0.610174 AGTCGCTTGGCAGAGAATCA 59.390 50.000 0.00 0.00 37.82 2.57
1843 4931 1.606480 CCACATTCCGATCCAGATCCG 60.606 57.143 2.11 0.00 34.40 4.18
1855 4943 1.547372 AGTGCTGCAATTCCACATTCC 59.453 47.619 2.77 0.00 32.09 3.01
1898 4986 1.079543 CTTCAGCTGGTCCAGTCCG 60.080 63.158 20.24 9.07 33.43 4.79
1913 5001 3.274288 CTTCCCTTCACACATAGCCTTC 58.726 50.000 0.00 0.00 0.00 3.46
2028 5116 2.938956 ACCTCCTGTGAAGAAAGGTG 57.061 50.000 0.00 0.00 38.88 4.00
2063 5151 3.370315 GGTGCTTGAATCCATCAGTCTCT 60.370 47.826 0.00 0.00 39.77 3.10
2108 5196 6.018425 CGACCTTCTCTAAAATGTCCATCATG 60.018 42.308 0.00 0.00 36.81 3.07
2176 5271 6.428159 ACACTACTGCAGATCCAAACTTTAAG 59.572 38.462 23.35 0.00 0.00 1.85
2179 5274 4.718961 ACACTACTGCAGATCCAAACTTT 58.281 39.130 23.35 0.00 0.00 2.66
2197 5294 8.421249 TGATAAGAAAATCAAAATGGGACACT 57.579 30.769 0.00 0.00 35.09 3.55
2201 5298 8.814931 ACACATGATAAGAAAATCAAAATGGGA 58.185 29.630 0.00 0.00 39.25 4.37
2202 5299 9.090692 GACACATGATAAGAAAATCAAAATGGG 57.909 33.333 0.00 0.00 39.25 4.00
2207 5304 9.681692 CACAAGACACATGATAAGAAAATCAAA 57.318 29.630 0.00 0.00 39.25 2.69
2228 5325 1.013596 TTCTGCAACCGACACACAAG 58.986 50.000 0.00 0.00 0.00 3.16
2262 5361 2.027745 AGAGCACAGGGTACACATTCTG 60.028 50.000 0.00 0.00 0.00 3.02
2274 5373 3.567164 AGTTCAAATGTCAAGAGCACAGG 59.433 43.478 0.00 0.00 0.00 4.00
2275 5374 4.825546 AGTTCAAATGTCAAGAGCACAG 57.174 40.909 0.00 0.00 0.00 3.66
2310 5410 7.992180 ATGAAAGAAATAACCATGCGAAATC 57.008 32.000 0.00 0.00 0.00 2.17
2312 5412 8.087750 AGAAATGAAAGAAATAACCATGCGAAA 58.912 29.630 0.00 0.00 0.00 3.46
2324 5424 6.042143 ACAACGCAACAGAAATGAAAGAAAT 58.958 32.000 0.00 0.00 0.00 2.17
2343 5446 6.373186 AACTAAGGGAGAAAGAAAACAACG 57.627 37.500 0.00 0.00 0.00 4.10
2396 5500 3.076621 CAGAGCATGCAAACCTTCTACA 58.923 45.455 21.98 0.00 0.00 2.74
2398 5502 3.244526 TGTCAGAGCATGCAAACCTTCTA 60.245 43.478 21.98 0.00 0.00 2.10
2399 5503 2.157738 GTCAGAGCATGCAAACCTTCT 58.842 47.619 21.98 9.86 0.00 2.85
2400 5504 1.881973 TGTCAGAGCATGCAAACCTTC 59.118 47.619 21.98 7.40 0.00 3.46
2406 5511 4.705991 TCCATTTTATGTCAGAGCATGCAA 59.294 37.500 21.98 0.90 0.00 4.08
2408 5513 4.906065 TCCATTTTATGTCAGAGCATGC 57.094 40.909 10.51 10.51 0.00 4.06
2411 5516 6.057533 CCAGTATCCATTTTATGTCAGAGCA 58.942 40.000 0.00 0.00 0.00 4.26
2422 5527 6.656693 CAGAACTTCAGTCCAGTATCCATTTT 59.343 38.462 0.00 0.00 0.00 1.82
2423 5528 6.013379 TCAGAACTTCAGTCCAGTATCCATTT 60.013 38.462 0.00 0.00 0.00 2.32
2425 5530 5.026121 TCAGAACTTCAGTCCAGTATCCAT 58.974 41.667 0.00 0.00 0.00 3.41
2426 5531 4.416516 TCAGAACTTCAGTCCAGTATCCA 58.583 43.478 0.00 0.00 0.00 3.41
2427 5532 5.172205 GTTCAGAACTTCAGTCCAGTATCC 58.828 45.833 6.00 0.00 0.00 2.59
2428 5533 5.046950 AGGTTCAGAACTTCAGTCCAGTATC 60.047 44.000 13.13 0.00 0.00 2.24
2481 5586 2.622436 ACTTCGAATAGCTGGAAGTGC 58.378 47.619 17.76 0.00 46.20 4.40
2491 5596 4.272018 CCAGGCAGATGAAACTTCGAATAG 59.728 45.833 0.00 0.00 0.00 1.73
2497 5602 4.202151 ACAAAACCAGGCAGATGAAACTTC 60.202 41.667 0.00 0.00 0.00 3.01
2505 5611 4.019174 CTGGATAACAAAACCAGGCAGAT 58.981 43.478 0.00 0.00 44.96 2.90
2521 5627 2.039216 TCGTTTCAACTTGGCCTGGATA 59.961 45.455 3.32 0.00 0.00 2.59
2578 5707 3.181510 GGTTCGGGAAATTTCAGATCACG 60.182 47.826 19.49 6.46 41.19 4.35
2709 5842 8.763601 CCTTAGAGAAATCTATATTAGTGGGGG 58.236 40.741 0.00 0.00 0.00 5.40
2834 5970 6.516718 CATGACTAGTCCTTACATTGTAGGG 58.483 44.000 20.11 16.77 32.20 3.53
2956 6105 8.107095 TGAGGAAATATGTTTTACAGCTAACCT 58.893 33.333 0.00 0.00 0.00 3.50
3118 6303 5.189539 TCAGACATGATTAGTGACCATTCCA 59.810 40.000 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.