Multiple sequence alignment - TraesCS5A01G528000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G528000 chr5A 100.000 4650 0 0 1 4650 688291625 688296274 0.000000e+00 8588
1 TraesCS5A01G528000 chr4D 95.684 3916 95 33 5 3889 503785558 503789430 0.000000e+00 6228
2 TraesCS5A01G528000 chr4D 96.466 481 13 2 4174 4650 503789427 503789907 0.000000e+00 791
3 TraesCS5A01G528000 chr4B 95.154 3900 112 33 60 3889 649577471 649581363 0.000000e+00 6083
4 TraesCS5A01G528000 chr4B 94.077 287 17 0 3888 4174 44680595 44680881 1.990000e-118 436
5 TraesCS5A01G528000 chr4B 93.220 295 20 0 3884 4178 396519946 396520240 7.150000e-118 435
6 TraesCS5A01G528000 chr4B 98.157 217 4 0 4196 4412 649581390 649581606 3.400000e-101 379
7 TraesCS5A01G528000 chr1B 74.783 2185 458 83 1009 3154 677527526 677529656 0.000000e+00 896
8 TraesCS5A01G528000 chr6B 95.122 287 14 0 3888 4174 239358718 239359004 1.970000e-123 453
9 TraesCS5A01G528000 chr2A 94.425 287 16 0 3888 4174 14433897 14434183 4.270000e-120 442
10 TraesCS5A01G528000 chr7D 93.493 292 19 0 3886 4177 267928737 267928446 7.150000e-118 435
11 TraesCS5A01G528000 chr7D 91.525 295 25 0 3885 4179 285468861 285469155 1.560000e-109 407
12 TraesCS5A01G528000 chr2D 93.127 291 20 0 3886 4176 479311070 479311360 1.200000e-115 427
13 TraesCS5A01G528000 chr3B 92.833 293 20 1 3884 4176 749130670 749130961 1.550000e-114 424
14 TraesCS5A01G528000 chr5D 93.056 288 19 1 3888 4174 208616594 208616307 2.000000e-113 420


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G528000 chr5A 688291625 688296274 4649 False 8588.0 8588 100.0000 1 4650 1 chr5A.!!$F1 4649
1 TraesCS5A01G528000 chr4D 503785558 503789907 4349 False 3509.5 6228 96.0750 5 4650 2 chr4D.!!$F1 4645
2 TraesCS5A01G528000 chr4B 649577471 649581606 4135 False 3231.0 6083 96.6555 60 4412 2 chr4B.!!$F3 4352
3 TraesCS5A01G528000 chr1B 677527526 677529656 2130 False 896.0 896 74.7830 1009 3154 1 chr1B.!!$F1 2145

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 798 0.103937 CAGGGAGCTTGACCTCGATC 59.896 60.000 2.88 0.00 34.05 3.69 F
712 799 1.066587 GGGAGCTTGACCTCGATCG 59.933 63.158 9.36 9.36 32.57 3.69 F
1431 1522 1.329256 TCCCGAATCTCTTCCGGATC 58.671 55.000 4.15 0.00 34.92 3.36 F
2728 2820 0.884704 GCCGAAGAGTTTCACTGCCA 60.885 55.000 0.00 0.00 32.67 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2029 2121 2.084610 TTGTTCGACTCTGCATGGAG 57.915 50.000 8.12 8.12 39.09 3.86 R
2682 2774 7.114388 GCCTTTGGAGTTTGAAGTTTTAATACG 59.886 37.037 0.00 0.00 0.00 3.06 R
2979 3071 0.874390 CGCAATGTACAACAGGTGCT 59.126 50.000 0.00 0.00 39.53 4.40 R
4099 4192 0.036765 TACAGCCAACCTTGTAGCCG 60.037 55.000 0.00 0.00 0.00 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 86 3.074390 TGTCATCAGAAACCACCTTCCAT 59.926 43.478 0.00 0.00 0.00 3.41
80 93 1.131303 AACCACCTTCCATCGGGACA 61.131 55.000 0.00 0.00 44.89 4.02
146 170 1.201429 ACCAGCTAGGGTCCCACAAG 61.201 60.000 11.55 5.63 43.89 3.16
153 177 2.283101 GGTCCCACAAGCATGGCA 60.283 61.111 0.00 0.00 38.55 4.92
172 206 3.013327 AGATGCAGGCAGGCTGGA 61.013 61.111 24.60 22.81 34.04 3.86
261 323 1.165270 GACCAATGACCAAAGACCGG 58.835 55.000 0.00 0.00 0.00 5.28
262 324 0.893727 ACCAATGACCAAAGACCGGC 60.894 55.000 0.00 0.00 0.00 6.13
263 325 0.893270 CCAATGACCAAAGACCGGCA 60.893 55.000 0.00 0.00 0.00 5.69
264 326 0.958091 CAATGACCAAAGACCGGCAA 59.042 50.000 0.00 0.00 0.00 4.52
285 347 1.961277 AAGACGACTTGCTTGCCGG 60.961 57.895 0.00 0.00 34.80 6.13
289 351 1.358759 CGACTTGCTTGCCGGTTTT 59.641 52.632 1.90 0.00 0.00 2.43
290 352 0.589223 CGACTTGCTTGCCGGTTTTA 59.411 50.000 1.90 0.00 0.00 1.52
291 353 1.399727 CGACTTGCTTGCCGGTTTTAG 60.400 52.381 1.90 0.00 0.00 1.85
292 354 1.877443 GACTTGCTTGCCGGTTTTAGA 59.123 47.619 1.90 0.00 0.00 2.10
293 355 1.880027 ACTTGCTTGCCGGTTTTAGAG 59.120 47.619 1.90 0.00 0.00 2.43
294 356 2.151202 CTTGCTTGCCGGTTTTAGAGA 58.849 47.619 1.90 0.00 0.00 3.10
295 357 1.519408 TGCTTGCCGGTTTTAGAGAC 58.481 50.000 1.90 0.00 0.00 3.36
331 402 6.531021 TCCAGCTATATAAACCCTTTAGTGC 58.469 40.000 0.00 0.00 0.00 4.40
369 446 0.680921 ACGTAACCGCCACCTAGCTA 60.681 55.000 0.00 0.00 37.70 3.32
395 472 2.944129 CTAGCTAGCAGTCCTCTCCTT 58.056 52.381 18.83 0.00 0.00 3.36
414 491 4.164030 TCCTTATAGCAGGAGCAATGACAA 59.836 41.667 0.00 0.00 45.49 3.18
432 509 4.002316 GACAATGCTCAGCTTCTTCTTCT 58.998 43.478 0.00 0.00 0.00 2.85
435 512 3.758755 TGCTCAGCTTCTTCTTCTTCA 57.241 42.857 0.00 0.00 0.00 3.02
436 513 3.397482 TGCTCAGCTTCTTCTTCTTCAC 58.603 45.455 0.00 0.00 0.00 3.18
437 514 2.741517 GCTCAGCTTCTTCTTCTTCACC 59.258 50.000 0.00 0.00 0.00 4.02
459 539 1.323271 CCTCTGCTCCCACGCTCTTA 61.323 60.000 0.00 0.00 0.00 2.10
519 602 0.174617 GCTCCTCTCCTTCAAGTCCG 59.825 60.000 0.00 0.00 0.00 4.79
587 670 4.340246 CACTGCAGCTGGCCAGGA 62.340 66.667 33.46 9.86 43.89 3.86
658 745 0.761323 TCCTTCAACCTGTCGGGACA 60.761 55.000 4.16 1.05 39.32 4.02
709 796 0.967887 CTCAGGGAGCTTGACCTCGA 60.968 60.000 2.88 4.57 34.05 4.04
710 797 0.324738 TCAGGGAGCTTGACCTCGAT 60.325 55.000 2.88 0.00 34.05 3.59
711 798 0.103937 CAGGGAGCTTGACCTCGATC 59.896 60.000 2.88 0.00 34.05 3.69
712 799 1.066587 GGGAGCTTGACCTCGATCG 59.933 63.158 9.36 9.36 32.57 3.69
715 802 2.184322 GCTTGACCTCGATCGGCA 59.816 61.111 16.41 6.06 0.00 5.69
729 816 4.025401 GGCAACAACCACCTCGCG 62.025 66.667 0.00 0.00 0.00 5.87
875 966 6.023603 ACCTAAGTAGAAACCATCTCCAAGA 58.976 40.000 0.00 0.00 39.71 3.02
951 1042 5.337009 CCTTTCCAGAAATGATTTGTCAGGG 60.337 44.000 0.00 0.00 0.00 4.45
1235 1326 7.391148 TTTCTGTCCAGGAAAATATGCTTAC 57.609 36.000 0.00 0.00 30.94 2.34
1431 1522 1.329256 TCCCGAATCTCTTCCGGATC 58.671 55.000 4.15 0.00 34.92 3.36
1443 1534 2.988010 TCCGGATCAATCTCCAACAG 57.012 50.000 0.00 0.00 34.78 3.16
1698 1790 7.618137 TCTATACTAACTCTTTCACCCAAACC 58.382 38.462 0.00 0.00 0.00 3.27
1751 1843 4.038883 CCTTTCCCTACTCCAAGTATACGG 59.961 50.000 0.00 0.00 29.08 4.02
1896 1988 6.203723 ACTTGTTGACACTAGATCTTTCAAGC 59.796 38.462 0.00 2.30 34.06 4.01
2728 2820 0.884704 GCCGAAGAGTTTCACTGCCA 60.885 55.000 0.00 0.00 32.67 4.92
2979 3071 0.994247 ATCTTCACTGCCATGGTCCA 59.006 50.000 14.67 2.41 0.00 4.02
3182 3275 6.183360 CCCACCTCTTCTATGTTTACTCTACC 60.183 46.154 0.00 0.00 0.00 3.18
3466 3559 0.251634 TTGTGGACATGCGGCTATCA 59.748 50.000 0.00 0.00 0.00 2.15
3487 3580 3.845781 TTGGATCTTGAGTATGGGCTC 57.154 47.619 0.00 0.00 36.12 4.70
3737 3830 7.040132 TGCATCGATATTGTTGGGCATATTTTA 60.040 33.333 0.00 0.00 0.00 1.52
3887 3980 3.038788 TCGCAACAGCTGAGTTCATAA 57.961 42.857 23.35 0.00 0.00 1.90
3888 3981 2.995939 TCGCAACAGCTGAGTTCATAAG 59.004 45.455 23.35 1.75 0.00 1.73
3889 3982 2.995939 CGCAACAGCTGAGTTCATAAGA 59.004 45.455 23.35 0.00 0.00 2.10
3890 3983 3.061831 CGCAACAGCTGAGTTCATAAGAG 59.938 47.826 23.35 0.00 0.00 2.85
3891 3984 3.181512 GCAACAGCTGAGTTCATAAGAGC 60.182 47.826 23.35 0.00 0.00 4.09
3892 3985 3.969287 ACAGCTGAGTTCATAAGAGCA 57.031 42.857 23.35 0.00 0.00 4.26
3893 3986 4.277515 ACAGCTGAGTTCATAAGAGCAA 57.722 40.909 23.35 0.00 0.00 3.91
3894 3987 4.252073 ACAGCTGAGTTCATAAGAGCAAG 58.748 43.478 23.35 0.00 0.00 4.01
3895 3988 4.252073 CAGCTGAGTTCATAAGAGCAAGT 58.748 43.478 8.42 0.00 0.00 3.16
3896 3989 5.047021 ACAGCTGAGTTCATAAGAGCAAGTA 60.047 40.000 23.35 0.00 0.00 2.24
3897 3990 5.290643 CAGCTGAGTTCATAAGAGCAAGTAC 59.709 44.000 8.42 0.00 0.00 2.73
3898 3991 5.047021 AGCTGAGTTCATAAGAGCAAGTACA 60.047 40.000 0.00 0.00 0.00 2.90
3899 3992 5.639506 GCTGAGTTCATAAGAGCAAGTACAA 59.360 40.000 0.00 0.00 0.00 2.41
3900 3993 6.314896 GCTGAGTTCATAAGAGCAAGTACAAT 59.685 38.462 0.00 0.00 0.00 2.71
3901 3994 7.492669 GCTGAGTTCATAAGAGCAAGTACAATA 59.507 37.037 0.00 0.00 0.00 1.90
3902 3995 9.371136 CTGAGTTCATAAGAGCAAGTACAATAA 57.629 33.333 0.00 0.00 0.00 1.40
3903 3996 9.371136 TGAGTTCATAAGAGCAAGTACAATAAG 57.629 33.333 0.00 0.00 0.00 1.73
3904 3997 8.723942 AGTTCATAAGAGCAAGTACAATAAGG 57.276 34.615 0.00 0.00 0.00 2.69
3905 3998 8.322091 AGTTCATAAGAGCAAGTACAATAAGGT 58.678 33.333 0.00 0.00 0.00 3.50
3906 3999 8.391106 GTTCATAAGAGCAAGTACAATAAGGTG 58.609 37.037 0.00 0.00 0.00 4.00
3907 4000 7.847096 TCATAAGAGCAAGTACAATAAGGTGA 58.153 34.615 0.00 0.00 0.00 4.02
3908 4001 7.764443 TCATAAGAGCAAGTACAATAAGGTGAC 59.236 37.037 0.00 0.00 0.00 3.67
3909 4002 5.483685 AGAGCAAGTACAATAAGGTGACA 57.516 39.130 0.00 0.00 0.00 3.58
3910 4003 6.054860 AGAGCAAGTACAATAAGGTGACAT 57.945 37.500 0.00 0.00 0.00 3.06
3911 4004 7.182817 AGAGCAAGTACAATAAGGTGACATA 57.817 36.000 0.00 0.00 0.00 2.29
3912 4005 7.620880 AGAGCAAGTACAATAAGGTGACATAA 58.379 34.615 0.00 0.00 0.00 1.90
3913 4006 7.766278 AGAGCAAGTACAATAAGGTGACATAAG 59.234 37.037 0.00 0.00 0.00 1.73
3914 4007 6.316390 AGCAAGTACAATAAGGTGACATAAGC 59.684 38.462 0.00 0.00 0.00 3.09
3915 4008 6.093495 GCAAGTACAATAAGGTGACATAAGCA 59.907 38.462 0.00 0.00 0.00 3.91
3916 4009 7.677276 GCAAGTACAATAAGGTGACATAAGCAG 60.677 40.741 0.00 0.00 0.00 4.24
3917 4010 6.349300 AGTACAATAAGGTGACATAAGCAGG 58.651 40.000 0.00 0.00 0.00 4.85
3918 4011 3.947834 ACAATAAGGTGACATAAGCAGGC 59.052 43.478 0.00 0.00 0.00 4.85
3919 4012 4.202441 CAATAAGGTGACATAAGCAGGCT 58.798 43.478 0.00 0.00 0.00 4.58
3920 4013 5.104527 ACAATAAGGTGACATAAGCAGGCTA 60.105 40.000 0.00 0.00 0.00 3.93
3921 4014 5.832539 ATAAGGTGACATAAGCAGGCTAT 57.167 39.130 0.00 0.00 0.00 2.97
3922 4015 6.935240 ATAAGGTGACATAAGCAGGCTATA 57.065 37.500 0.00 0.00 0.00 1.31
3923 4016 5.630415 AAGGTGACATAAGCAGGCTATAA 57.370 39.130 0.00 0.00 0.00 0.98
3924 4017 5.220710 AGGTGACATAAGCAGGCTATAAG 57.779 43.478 0.00 0.00 0.00 1.73
3925 4018 4.040952 AGGTGACATAAGCAGGCTATAAGG 59.959 45.833 0.00 0.00 0.00 2.69
3926 4019 4.040461 GGTGACATAAGCAGGCTATAAGGA 59.960 45.833 0.00 0.00 0.00 3.36
3927 4020 4.991687 GTGACATAAGCAGGCTATAAGGAC 59.008 45.833 0.00 0.00 0.00 3.85
3928 4021 4.901849 TGACATAAGCAGGCTATAAGGACT 59.098 41.667 0.00 0.00 0.00 3.85
3929 4022 6.015350 GTGACATAAGCAGGCTATAAGGACTA 60.015 42.308 0.00 0.00 0.00 2.59
3930 4023 6.209589 TGACATAAGCAGGCTATAAGGACTAG 59.790 42.308 0.00 0.00 0.00 2.57
3931 4024 6.315714 ACATAAGCAGGCTATAAGGACTAGA 58.684 40.000 0.00 0.00 0.00 2.43
3932 4025 6.782988 ACATAAGCAGGCTATAAGGACTAGAA 59.217 38.462 0.00 0.00 0.00 2.10
3933 4026 7.456269 ACATAAGCAGGCTATAAGGACTAGAAT 59.544 37.037 0.00 0.00 0.00 2.40
3934 4027 8.972127 CATAAGCAGGCTATAAGGACTAGAATA 58.028 37.037 0.00 0.00 0.00 1.75
3935 4028 9.722317 ATAAGCAGGCTATAAGGACTAGAATAT 57.278 33.333 0.00 0.00 0.00 1.28
3936 4029 8.442660 AAGCAGGCTATAAGGACTAGAATATT 57.557 34.615 0.00 0.00 0.00 1.28
3937 4030 9.548631 AAGCAGGCTATAAGGACTAGAATATTA 57.451 33.333 0.00 0.00 0.00 0.98
3938 4031 9.722317 AGCAGGCTATAAGGACTAGAATATTAT 57.278 33.333 0.00 0.00 0.00 1.28
3961 4054 9.823647 TTATATCTTTGCTTAGTTGAAGGAGAG 57.176 33.333 0.00 0.00 38.60 3.20
3962 4055 5.808366 TCTTTGCTTAGTTGAAGGAGAGA 57.192 39.130 0.00 0.00 42.27 3.10
3963 4056 5.788450 TCTTTGCTTAGTTGAAGGAGAGAG 58.212 41.667 0.00 0.00 40.45 3.20
3964 4057 5.540337 TCTTTGCTTAGTTGAAGGAGAGAGA 59.460 40.000 0.00 0.00 40.45 3.10
3965 4058 5.808366 TTGCTTAGTTGAAGGAGAGAGAA 57.192 39.130 0.00 0.00 36.76 2.87
3966 4059 5.398603 TGCTTAGTTGAAGGAGAGAGAAG 57.601 43.478 0.00 0.00 35.49 2.85
3967 4060 5.080337 TGCTTAGTTGAAGGAGAGAGAAGA 58.920 41.667 0.00 0.00 35.49 2.87
3968 4061 5.184864 TGCTTAGTTGAAGGAGAGAGAAGAG 59.815 44.000 0.00 0.00 35.49 2.85
3969 4062 5.394115 GCTTAGTTGAAGGAGAGAGAAGAGG 60.394 48.000 0.00 0.00 35.49 3.69
3970 4063 4.396357 AGTTGAAGGAGAGAGAAGAGGA 57.604 45.455 0.00 0.00 0.00 3.71
3971 4064 4.344104 AGTTGAAGGAGAGAGAAGAGGAG 58.656 47.826 0.00 0.00 0.00 3.69
3972 4065 4.044065 AGTTGAAGGAGAGAGAAGAGGAGA 59.956 45.833 0.00 0.00 0.00 3.71
3973 4066 4.235079 TGAAGGAGAGAGAAGAGGAGAG 57.765 50.000 0.00 0.00 0.00 3.20
3974 4067 3.849574 TGAAGGAGAGAGAAGAGGAGAGA 59.150 47.826 0.00 0.00 0.00 3.10
3975 4068 4.080356 TGAAGGAGAGAGAAGAGGAGAGAG 60.080 50.000 0.00 0.00 0.00 3.20
3976 4069 2.780010 AGGAGAGAGAAGAGGAGAGAGG 59.220 54.545 0.00 0.00 0.00 3.69
3977 4070 2.777692 GGAGAGAGAAGAGGAGAGAGGA 59.222 54.545 0.00 0.00 0.00 3.71
3978 4071 3.181450 GGAGAGAGAAGAGGAGAGAGGAG 60.181 56.522 0.00 0.00 0.00 3.69
3979 4072 3.711704 GAGAGAGAAGAGGAGAGAGGAGA 59.288 52.174 0.00 0.00 0.00 3.71
3980 4073 3.713764 AGAGAGAAGAGGAGAGAGGAGAG 59.286 52.174 0.00 0.00 0.00 3.20
3981 4074 3.711704 GAGAGAAGAGGAGAGAGGAGAGA 59.288 52.174 0.00 0.00 0.00 3.10
3982 4075 4.111577 AGAGAAGAGGAGAGAGGAGAGAA 58.888 47.826 0.00 0.00 0.00 2.87
3983 4076 4.164988 AGAGAAGAGGAGAGAGGAGAGAAG 59.835 50.000 0.00 0.00 0.00 2.85
3984 4077 2.736670 AGAGGAGAGAGGAGAGAAGC 57.263 55.000 0.00 0.00 0.00 3.86
3985 4078 1.134098 AGAGGAGAGAGGAGAGAAGCG 60.134 57.143 0.00 0.00 0.00 4.68
3986 4079 0.106719 AGGAGAGAGGAGAGAAGCGG 60.107 60.000 0.00 0.00 0.00 5.52
3987 4080 0.106918 GGAGAGAGGAGAGAAGCGGA 60.107 60.000 0.00 0.00 0.00 5.54
3988 4081 1.021968 GAGAGAGGAGAGAAGCGGAC 58.978 60.000 0.00 0.00 0.00 4.79
3989 4082 0.623723 AGAGAGGAGAGAAGCGGACT 59.376 55.000 0.00 0.00 0.00 3.85
3990 4083 1.021968 GAGAGGAGAGAAGCGGACTC 58.978 60.000 0.00 0.00 34.95 3.36
3991 4084 0.623723 AGAGGAGAGAAGCGGACTCT 59.376 55.000 9.39 9.39 45.74 3.24
3992 4085 1.005450 AGAGGAGAGAAGCGGACTCTT 59.995 52.381 10.57 0.00 43.55 2.85
3993 4086 1.134175 GAGGAGAGAAGCGGACTCTTG 59.866 57.143 10.57 0.00 43.55 3.02
3994 4087 0.174617 GGAGAGAAGCGGACTCTTGG 59.825 60.000 10.57 0.00 43.55 3.61
3995 4088 0.892063 GAGAGAAGCGGACTCTTGGT 59.108 55.000 10.57 0.00 43.55 3.67
3996 4089 1.273886 GAGAGAAGCGGACTCTTGGTT 59.726 52.381 10.57 0.00 43.55 3.67
3997 4090 2.492484 GAGAGAAGCGGACTCTTGGTTA 59.508 50.000 10.57 0.00 43.55 2.85
3998 4091 2.494073 AGAGAAGCGGACTCTTGGTTAG 59.506 50.000 4.93 0.00 41.20 2.34
3999 4092 2.231721 GAGAAGCGGACTCTTGGTTAGT 59.768 50.000 0.00 0.00 0.00 2.24
4000 4093 3.428532 AGAAGCGGACTCTTGGTTAGTA 58.571 45.455 0.00 0.00 0.00 1.82
4001 4094 3.444388 AGAAGCGGACTCTTGGTTAGTAG 59.556 47.826 0.00 0.00 0.00 2.57
4002 4095 1.477295 AGCGGACTCTTGGTTAGTAGC 59.523 52.381 0.00 0.00 33.45 3.58
4003 4096 1.471153 GCGGACTCTTGGTTAGTAGCC 60.471 57.143 0.00 0.00 0.00 3.93
4004 4097 1.202268 CGGACTCTTGGTTAGTAGCCG 60.202 57.143 0.00 0.00 0.00 5.52
4005 4098 1.136500 GGACTCTTGGTTAGTAGCCGG 59.864 57.143 0.00 0.00 0.00 6.13
4006 4099 0.535797 ACTCTTGGTTAGTAGCCGGC 59.464 55.000 21.89 21.89 0.00 6.13
4007 4100 0.824759 CTCTTGGTTAGTAGCCGGCT 59.175 55.000 34.85 34.85 0.00 5.52
4008 4101 0.822164 TCTTGGTTAGTAGCCGGCTC 59.178 55.000 36.73 24.10 0.00 4.70
4009 4102 0.824759 CTTGGTTAGTAGCCGGCTCT 59.175 55.000 36.73 29.37 0.00 4.09
4010 4103 2.029623 CTTGGTTAGTAGCCGGCTCTA 58.970 52.381 36.73 28.29 0.00 2.43
4011 4104 1.688772 TGGTTAGTAGCCGGCTCTAG 58.311 55.000 36.73 0.00 0.00 2.43
4012 4105 0.314618 GGTTAGTAGCCGGCTCTAGC 59.685 60.000 36.73 29.93 41.14 3.42
4013 4106 1.030457 GTTAGTAGCCGGCTCTAGCA 58.970 55.000 36.73 13.19 44.36 3.49
4014 4107 1.030457 TTAGTAGCCGGCTCTAGCAC 58.970 55.000 36.73 25.44 44.36 4.40
4015 4108 1.164662 TAGTAGCCGGCTCTAGCACG 61.165 60.000 36.73 5.23 44.36 5.34
4016 4109 2.124445 TAGCCGGCTCTAGCACGA 60.124 61.111 36.73 10.36 44.36 4.35
4017 4110 2.187493 TAGCCGGCTCTAGCACGAG 61.187 63.158 36.73 0.00 44.36 4.18
4018 4111 2.604299 TAGCCGGCTCTAGCACGAGA 62.604 60.000 36.73 8.49 44.36 4.04
4019 4112 2.409651 CCGGCTCTAGCACGAGAC 59.590 66.667 12.44 2.52 44.36 3.36
4020 4113 2.409651 CGGCTCTAGCACGAGACC 59.590 66.667 4.07 6.19 44.36 3.85
4021 4114 2.809010 GGCTCTAGCACGAGACCC 59.191 66.667 4.07 0.00 44.36 4.46
4022 4115 2.052690 GGCTCTAGCACGAGACCCA 61.053 63.158 4.07 0.00 44.36 4.51
4023 4116 1.605058 GGCTCTAGCACGAGACCCAA 61.605 60.000 4.07 0.00 44.36 4.12
4024 4117 0.179124 GCTCTAGCACGAGACCCAAG 60.179 60.000 6.47 0.00 41.59 3.61
4025 4118 1.464734 CTCTAGCACGAGACCCAAGA 58.535 55.000 0.00 0.00 32.74 3.02
4026 4119 1.133407 CTCTAGCACGAGACCCAAGAC 59.867 57.143 0.00 0.00 32.74 3.01
4027 4120 0.179161 CTAGCACGAGACCCAAGACG 60.179 60.000 0.00 0.00 0.00 4.18
4028 4121 2.209064 TAGCACGAGACCCAAGACGC 62.209 60.000 0.00 0.00 0.00 5.19
4029 4122 2.651361 CACGAGACCCAAGACGCT 59.349 61.111 0.00 0.00 0.00 5.07
4030 4123 1.006102 CACGAGACCCAAGACGCTT 60.006 57.895 0.00 0.00 0.00 4.68
4031 4124 0.600255 CACGAGACCCAAGACGCTTT 60.600 55.000 0.00 0.00 0.00 3.51
4032 4125 0.600255 ACGAGACCCAAGACGCTTTG 60.600 55.000 0.00 0.00 0.00 2.77
4033 4126 0.600255 CGAGACCCAAGACGCTTTGT 60.600 55.000 0.00 0.00 0.00 2.83
4034 4127 0.868406 GAGACCCAAGACGCTTTGTG 59.132 55.000 0.00 0.00 0.00 3.33
4035 4128 0.468226 AGACCCAAGACGCTTTGTGA 59.532 50.000 0.00 0.00 0.00 3.58
4036 4129 0.868406 GACCCAAGACGCTTTGTGAG 59.132 55.000 0.00 0.00 0.00 3.51
4037 4130 0.535102 ACCCAAGACGCTTTGTGAGG 60.535 55.000 0.00 0.00 0.00 3.86
4038 4131 0.535102 CCCAAGACGCTTTGTGAGGT 60.535 55.000 0.00 0.00 0.00 3.85
4039 4132 1.308998 CCAAGACGCTTTGTGAGGTT 58.691 50.000 0.00 0.00 0.00 3.50
4040 4133 1.002468 CCAAGACGCTTTGTGAGGTTG 60.002 52.381 0.00 0.00 0.00 3.77
4041 4134 1.670811 CAAGACGCTTTGTGAGGTTGT 59.329 47.619 0.00 0.00 0.00 3.32
4042 4135 2.869801 CAAGACGCTTTGTGAGGTTGTA 59.130 45.455 0.00 0.00 0.00 2.41
4043 4136 3.188159 AGACGCTTTGTGAGGTTGTAA 57.812 42.857 0.00 0.00 0.00 2.41
4044 4137 3.131396 AGACGCTTTGTGAGGTTGTAAG 58.869 45.455 0.00 0.00 0.00 2.34
4045 4138 2.218603 ACGCTTTGTGAGGTTGTAAGG 58.781 47.619 0.00 0.00 0.00 2.69
4046 4139 2.218603 CGCTTTGTGAGGTTGTAAGGT 58.781 47.619 0.00 0.00 0.00 3.50
4047 4140 2.032030 CGCTTTGTGAGGTTGTAAGGTG 60.032 50.000 0.00 0.00 0.00 4.00
4048 4141 2.293399 GCTTTGTGAGGTTGTAAGGTGG 59.707 50.000 0.00 0.00 0.00 4.61
4049 4142 2.649531 TTGTGAGGTTGTAAGGTGGG 57.350 50.000 0.00 0.00 0.00 4.61
4050 4143 1.513858 TGTGAGGTTGTAAGGTGGGT 58.486 50.000 0.00 0.00 0.00 4.51
4051 4144 1.418637 TGTGAGGTTGTAAGGTGGGTC 59.581 52.381 0.00 0.00 0.00 4.46
4052 4145 1.418637 GTGAGGTTGTAAGGTGGGTCA 59.581 52.381 0.00 0.00 0.00 4.02
4053 4146 2.128535 TGAGGTTGTAAGGTGGGTCAA 58.871 47.619 0.00 0.00 0.00 3.18
4054 4147 2.158726 TGAGGTTGTAAGGTGGGTCAAC 60.159 50.000 0.00 0.00 39.24 3.18
4055 4148 2.105993 GAGGTTGTAAGGTGGGTCAACT 59.894 50.000 0.00 0.00 39.69 3.16
4056 4149 3.320129 AGGTTGTAAGGTGGGTCAACTA 58.680 45.455 0.00 0.00 39.69 2.24
4057 4150 3.072038 AGGTTGTAAGGTGGGTCAACTAC 59.928 47.826 0.00 0.00 39.69 2.73
4058 4151 3.072038 GGTTGTAAGGTGGGTCAACTACT 59.928 47.826 0.00 0.00 39.69 2.57
4059 4152 4.284234 GGTTGTAAGGTGGGTCAACTACTA 59.716 45.833 0.00 0.00 39.69 1.82
4060 4153 5.221702 GGTTGTAAGGTGGGTCAACTACTAA 60.222 44.000 0.00 0.00 39.69 2.24
4061 4154 6.470278 GTTGTAAGGTGGGTCAACTACTAAT 58.530 40.000 0.00 0.00 37.67 1.73
4062 4155 6.045072 TGTAAGGTGGGTCAACTACTAATG 57.955 41.667 0.00 0.00 27.88 1.90
4063 4156 5.781306 TGTAAGGTGGGTCAACTACTAATGA 59.219 40.000 0.00 0.00 27.88 2.57
4064 4157 5.836024 AAGGTGGGTCAACTACTAATGAA 57.164 39.130 0.00 0.00 27.88 2.57
4065 4158 5.422214 AGGTGGGTCAACTACTAATGAAG 57.578 43.478 0.00 0.00 24.99 3.02
4066 4159 4.844655 AGGTGGGTCAACTACTAATGAAGT 59.155 41.667 0.00 0.00 42.62 3.01
4067 4160 6.021030 AGGTGGGTCAACTACTAATGAAGTA 58.979 40.000 0.00 0.00 39.80 2.24
4101 4194 8.997621 ATATAACTTACTATTGTACATGCCGG 57.002 34.615 0.00 0.00 0.00 6.13
4102 4195 3.463944 ACTTACTATTGTACATGCCGGC 58.536 45.455 22.73 22.73 0.00 6.13
4103 4196 3.134081 ACTTACTATTGTACATGCCGGCT 59.866 43.478 29.70 10.43 0.00 5.52
4104 4197 4.342951 ACTTACTATTGTACATGCCGGCTA 59.657 41.667 29.70 14.84 0.00 3.93
4105 4198 3.107642 ACTATTGTACATGCCGGCTAC 57.892 47.619 29.70 21.65 0.00 3.58
4106 4199 2.432874 ACTATTGTACATGCCGGCTACA 59.567 45.455 29.70 24.05 0.00 2.74
4107 4200 2.411628 ATTGTACATGCCGGCTACAA 57.588 45.000 30.46 30.46 35.42 2.41
4108 4201 1.732941 TTGTACATGCCGGCTACAAG 58.267 50.000 26.94 16.08 0.00 3.16
4109 4202 0.107897 TGTACATGCCGGCTACAAGG 60.108 55.000 29.70 11.73 0.00 3.61
4110 4203 0.107848 GTACATGCCGGCTACAAGGT 60.108 55.000 29.70 17.55 0.00 3.50
4111 4204 0.616371 TACATGCCGGCTACAAGGTT 59.384 50.000 29.70 5.57 0.00 3.50
4112 4205 0.960364 ACATGCCGGCTACAAGGTTG 60.960 55.000 29.70 13.61 0.00 3.77
4113 4206 1.378514 ATGCCGGCTACAAGGTTGG 60.379 57.895 29.70 0.00 0.00 3.77
4114 4207 3.440415 GCCGGCTACAAGGTTGGC 61.440 66.667 22.15 0.00 35.04 4.52
4115 4208 2.351276 CCGGCTACAAGGTTGGCT 59.649 61.111 0.00 0.00 32.60 4.75
4116 4209 2.040544 CCGGCTACAAGGTTGGCTG 61.041 63.158 0.00 0.00 32.60 4.85
4117 4210 1.302511 CGGCTACAAGGTTGGCTGT 60.303 57.895 3.36 0.00 32.60 4.40
4118 4211 0.036765 CGGCTACAAGGTTGGCTGTA 60.037 55.000 3.36 0.00 32.60 2.74
4119 4212 1.739067 GGCTACAAGGTTGGCTGTAG 58.261 55.000 6.51 6.51 45.18 2.74
4120 4213 1.278127 GGCTACAAGGTTGGCTGTAGA 59.722 52.381 13.27 0.00 45.21 2.59
4121 4214 2.092914 GGCTACAAGGTTGGCTGTAGAT 60.093 50.000 13.27 0.00 45.21 1.98
4122 4215 2.939103 GCTACAAGGTTGGCTGTAGATG 59.061 50.000 13.27 0.00 45.21 2.90
4123 4216 3.369471 GCTACAAGGTTGGCTGTAGATGA 60.369 47.826 13.27 0.00 45.21 2.92
4124 4217 3.059352 ACAAGGTTGGCTGTAGATGAC 57.941 47.619 0.00 0.00 0.00 3.06
4125 4218 2.371841 ACAAGGTTGGCTGTAGATGACA 59.628 45.455 0.00 0.00 36.35 3.58
4126 4219 3.009473 ACAAGGTTGGCTGTAGATGACAT 59.991 43.478 0.00 0.00 37.45 3.06
4127 4220 3.272574 AGGTTGGCTGTAGATGACATG 57.727 47.619 0.00 0.00 37.45 3.21
4128 4221 1.672881 GGTTGGCTGTAGATGACATGC 59.327 52.381 0.00 0.00 37.45 4.06
4129 4222 1.672881 GTTGGCTGTAGATGACATGCC 59.327 52.381 6.76 6.76 45.37 4.40
4130 4223 3.786656 GGCTGTAGATGACATGCCA 57.213 52.632 8.48 0.00 44.91 4.92
4131 4224 2.042686 GGCTGTAGATGACATGCCAA 57.957 50.000 8.48 0.00 44.91 4.52
4132 4225 1.672881 GGCTGTAGATGACATGCCAAC 59.327 52.381 8.48 0.00 44.91 3.77
4133 4226 2.636830 GCTGTAGATGACATGCCAACT 58.363 47.619 0.00 0.00 37.45 3.16
4134 4227 2.611292 GCTGTAGATGACATGCCAACTC 59.389 50.000 0.00 0.00 37.45 3.01
4135 4228 3.201290 CTGTAGATGACATGCCAACTCC 58.799 50.000 0.00 0.00 37.45 3.85
4136 4229 2.840038 TGTAGATGACATGCCAACTCCT 59.160 45.455 0.00 0.00 31.20 3.69
4137 4230 3.264193 TGTAGATGACATGCCAACTCCTT 59.736 43.478 0.00 0.00 31.20 3.36
4138 4231 4.469586 TGTAGATGACATGCCAACTCCTTA 59.530 41.667 0.00 0.00 31.20 2.69
4139 4232 4.785346 AGATGACATGCCAACTCCTTAT 57.215 40.909 0.00 0.00 0.00 1.73
4140 4233 5.894298 AGATGACATGCCAACTCCTTATA 57.106 39.130 0.00 0.00 0.00 0.98
4141 4234 5.862845 AGATGACATGCCAACTCCTTATAG 58.137 41.667 0.00 0.00 0.00 1.31
4142 4235 3.808728 TGACATGCCAACTCCTTATAGC 58.191 45.455 0.00 0.00 0.00 2.97
4143 4236 3.142174 GACATGCCAACTCCTTATAGCC 58.858 50.000 0.00 0.00 0.00 3.93
4144 4237 2.146342 CATGCCAACTCCTTATAGCCG 58.854 52.381 0.00 0.00 0.00 5.52
4145 4238 1.491668 TGCCAACTCCTTATAGCCGA 58.508 50.000 0.00 0.00 0.00 5.54
4146 4239 2.047061 TGCCAACTCCTTATAGCCGAT 58.953 47.619 0.00 0.00 0.00 4.18
4147 4240 2.438021 TGCCAACTCCTTATAGCCGATT 59.562 45.455 0.00 0.00 0.00 3.34
4148 4241 2.808543 GCCAACTCCTTATAGCCGATTG 59.191 50.000 0.00 0.00 0.00 2.67
4149 4242 2.808543 CCAACTCCTTATAGCCGATTGC 59.191 50.000 0.00 0.00 41.71 3.56
4166 4259 7.016361 CCGATTGCTGGCTATATTATTAACC 57.984 40.000 0.00 0.00 0.00 2.85
4167 4260 6.597672 CCGATTGCTGGCTATATTATTAACCA 59.402 38.462 0.00 0.00 0.00 3.67
4168 4261 7.283127 CCGATTGCTGGCTATATTATTAACCAT 59.717 37.037 0.00 0.00 0.00 3.55
4169 4262 8.124823 CGATTGCTGGCTATATTATTAACCATG 58.875 37.037 0.00 0.00 0.00 3.66
4170 4263 6.757897 TGCTGGCTATATTATTAACCATGC 57.242 37.500 0.00 0.00 0.00 4.06
4171 4264 6.484288 TGCTGGCTATATTATTAACCATGCT 58.516 36.000 0.00 0.00 0.00 3.79
4172 4265 6.599244 TGCTGGCTATATTATTAACCATGCTC 59.401 38.462 0.00 0.00 0.00 4.26
4173 4266 6.825721 GCTGGCTATATTATTAACCATGCTCT 59.174 38.462 0.00 0.00 0.00 4.09
4174 4267 7.987458 GCTGGCTATATTATTAACCATGCTCTA 59.013 37.037 0.00 0.00 0.00 2.43
4215 4316 5.625568 AGTGATGGGTATGGGTTTAGTAC 57.374 43.478 0.00 0.00 0.00 2.73
4483 4585 4.764823 TGGTAATTTGCAGGTTAGTCCAAG 59.235 41.667 0.00 0.00 39.02 3.61
4493 4595 5.741011 CAGGTTAGTCCAAGGTTTATGCTA 58.259 41.667 0.00 0.00 39.02 3.49
4498 4600 3.118738 AGTCCAAGGTTTATGCTAGTCCG 60.119 47.826 0.00 0.00 0.00 4.79
4517 4619 1.818674 CGCCCATCTTAAACCAAAGCT 59.181 47.619 0.00 0.00 0.00 3.74
4577 4682 5.532779 GGAATACTAAGGCCTCCAAATTCAG 59.467 44.000 22.34 8.63 0.00 3.02
4610 4715 7.986889 AGCAAACTTTGTTCCAATTTACAAGAT 59.013 29.630 3.48 0.00 35.83 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.594592 GGCGTTTCTGGTGCTGGT 60.595 61.111 0.00 0.00 0.00 4.00
1 2 2.281761 AGGCGTTTCTGGTGCTGG 60.282 61.111 0.00 0.00 0.00 4.85
2 3 2.328099 GGAGGCGTTTCTGGTGCTG 61.328 63.158 0.00 0.00 0.00 4.41
3 4 2.032681 GGAGGCGTTTCTGGTGCT 59.967 61.111 0.00 0.00 0.00 4.40
43 44 2.076863 GTTTCTGATGACAACTCCGGG 58.923 52.381 0.00 0.00 0.00 5.73
51 52 2.441375 TGGAAGGTGGTTTCTGATGACA 59.559 45.455 0.00 0.00 0.00 3.58
52 53 3.140325 TGGAAGGTGGTTTCTGATGAC 57.860 47.619 0.00 0.00 0.00 3.06
73 86 2.750637 GCTCGTCTCCTGTCCCGA 60.751 66.667 0.00 0.00 0.00 5.14
80 93 2.441164 ATCTGCGGCTCGTCTCCT 60.441 61.111 0.00 0.00 0.00 3.69
153 177 2.045242 CAGCCTGCCTGCATCTGT 60.045 61.111 11.21 0.00 34.21 3.41
158 192 2.282674 CTTTCCAGCCTGCCTGCA 60.283 61.111 0.00 0.00 40.36 4.41
218 258 0.460987 GTGCTGTCTCCATCTTCCCG 60.461 60.000 0.00 0.00 0.00 5.14
283 345 1.347320 GTGCCTCGTCTCTAAAACCG 58.653 55.000 0.00 0.00 0.00 4.44
285 347 2.338500 CTGGTGCCTCGTCTCTAAAAC 58.662 52.381 0.00 0.00 0.00 2.43
289 351 1.000771 AGCTGGTGCCTCGTCTCTA 60.001 57.895 0.00 0.00 40.80 2.43
290 352 2.283532 AGCTGGTGCCTCGTCTCT 60.284 61.111 0.00 0.00 40.80 3.10
291 353 2.183046 GAGCTGGTGCCTCGTCTC 59.817 66.667 0.00 0.00 40.80 3.36
292 354 3.386237 GGAGCTGGTGCCTCGTCT 61.386 66.667 0.00 0.00 40.80 4.18
293 355 3.655810 CTGGAGCTGGTGCCTCGTC 62.656 68.421 0.00 0.00 40.80 4.20
294 356 3.699894 CTGGAGCTGGTGCCTCGT 61.700 66.667 0.00 0.00 40.80 4.18
331 402 1.015607 TGTGTGCACTAGCTCGCATG 61.016 55.000 19.41 0.00 46.20 4.06
355 432 0.824182 CTAGCTAGCTAGGTGGCGGT 60.824 60.000 34.95 10.45 41.58 5.68
356 433 1.960612 CTAGCTAGCTAGGTGGCGG 59.039 63.158 34.95 15.44 41.58 6.13
395 472 3.817084 GCATTGTCATTGCTCCTGCTATA 59.183 43.478 11.58 0.00 40.48 1.31
414 491 4.002316 GTGAAGAAGAAGAAGCTGAGCAT 58.998 43.478 7.39 0.00 0.00 3.79
432 509 0.547471 TGGGAGCAGAGGATGGTGAA 60.547 55.000 0.00 0.00 40.53 3.18
435 512 2.362369 CGTGGGAGCAGAGGATGGT 61.362 63.158 0.00 0.00 44.02 3.55
436 513 2.503061 CGTGGGAGCAGAGGATGG 59.497 66.667 0.00 0.00 0.00 3.51
437 514 2.202987 GCGTGGGAGCAGAGGATG 60.203 66.667 0.00 0.00 37.05 3.51
478 558 0.459078 GAGTTGGTCGCTACCCCTAC 59.541 60.000 4.73 1.00 46.16 3.18
479 559 1.033746 CGAGTTGGTCGCTACCCCTA 61.034 60.000 4.73 0.00 46.16 3.53
658 745 0.749454 GCCCAAGAATGGCGAGATGT 60.749 55.000 0.00 0.00 46.09 3.06
709 796 1.671054 CGAGGTGGTTGTTGCCGAT 60.671 57.895 0.00 0.00 0.00 4.18
710 797 2.280524 CGAGGTGGTTGTTGCCGA 60.281 61.111 0.00 0.00 0.00 5.54
711 798 4.025401 GCGAGGTGGTTGTTGCCG 62.025 66.667 0.00 0.00 0.00 5.69
712 799 4.025401 CGCGAGGTGGTTGTTGCC 62.025 66.667 0.00 0.00 0.00 4.52
875 966 0.039764 TATCTCGCCCGGGATCTCAT 59.960 55.000 29.31 11.19 36.60 2.90
951 1042 1.670406 CAGCGAGCCAGGGATATGC 60.670 63.158 0.00 0.00 0.00 3.14
1122 1213 1.482593 CTGAGCCGAGATAGTTTGGGT 59.517 52.381 0.00 0.00 35.04 4.51
1194 1285 4.021544 ACAGAAAGCAGTGTTAGAGAGGAG 60.022 45.833 0.00 0.00 0.00 3.69
1235 1326 2.161609 GCGTTTGGAGGTATTGTTCCAG 59.838 50.000 0.00 0.00 43.89 3.86
1413 1504 1.040646 TGATCCGGAAGAGATTCGGG 58.959 55.000 9.01 7.96 43.54 5.14
1431 1522 4.855388 CGAAGCAAATTCTGTTGGAGATTG 59.145 41.667 0.00 0.00 35.61 2.67
1479 1570 6.418226 TGCAATTTGTTAACGTGGTTATGAAC 59.582 34.615 0.26 0.00 0.00 3.18
1698 1790 2.393646 CTACTCAAGGAAGAGGGGAGG 58.606 57.143 0.00 0.00 39.97 4.30
1797 1889 5.390991 GCTGAGGTCCAAAGAAATTAGTTCG 60.391 44.000 0.00 0.00 41.52 3.95
1896 1988 6.887545 TGGGTATTGGTCCTGTAAAGTTATTG 59.112 38.462 0.00 0.00 0.00 1.90
2029 2121 2.084610 TTGTTCGACTCTGCATGGAG 57.915 50.000 8.12 8.12 39.09 3.86
2682 2774 7.114388 GCCTTTGGAGTTTGAAGTTTTAATACG 59.886 37.037 0.00 0.00 0.00 3.06
2979 3071 0.874390 CGCAATGTACAACAGGTGCT 59.126 50.000 0.00 0.00 39.53 4.40
3466 3559 3.073650 GGAGCCCATACTCAAGATCCAAT 59.926 47.826 0.00 0.00 38.50 3.16
3887 3980 5.483685 TGTCACCTTATTGTACTTGCTCT 57.516 39.130 0.00 0.00 0.00 4.09
3888 3981 7.466050 GCTTATGTCACCTTATTGTACTTGCTC 60.466 40.741 0.00 0.00 0.00 4.26
3889 3982 6.316390 GCTTATGTCACCTTATTGTACTTGCT 59.684 38.462 0.00 0.00 0.00 3.91
3890 3983 6.093495 TGCTTATGTCACCTTATTGTACTTGC 59.907 38.462 0.00 0.00 0.00 4.01
3891 3984 7.201644 CCTGCTTATGTCACCTTATTGTACTTG 60.202 40.741 0.00 0.00 0.00 3.16
3892 3985 6.823689 CCTGCTTATGTCACCTTATTGTACTT 59.176 38.462 0.00 0.00 0.00 2.24
3893 3986 6.349300 CCTGCTTATGTCACCTTATTGTACT 58.651 40.000 0.00 0.00 0.00 2.73
3894 3987 5.007724 GCCTGCTTATGTCACCTTATTGTAC 59.992 44.000 0.00 0.00 0.00 2.90
3895 3988 5.104527 AGCCTGCTTATGTCACCTTATTGTA 60.105 40.000 0.00 0.00 0.00 2.41
3896 3989 3.947834 GCCTGCTTATGTCACCTTATTGT 59.052 43.478 0.00 0.00 0.00 2.71
3897 3990 4.202441 AGCCTGCTTATGTCACCTTATTG 58.798 43.478 0.00 0.00 0.00 1.90
3898 3991 4.510167 AGCCTGCTTATGTCACCTTATT 57.490 40.909 0.00 0.00 0.00 1.40
3899 3992 5.832539 ATAGCCTGCTTATGTCACCTTAT 57.167 39.130 0.00 0.00 0.00 1.73
3900 3993 6.239600 CCTTATAGCCTGCTTATGTCACCTTA 60.240 42.308 0.00 0.00 0.00 2.69
3901 3994 5.455326 CCTTATAGCCTGCTTATGTCACCTT 60.455 44.000 0.00 0.00 0.00 3.50
3902 3995 4.040952 CCTTATAGCCTGCTTATGTCACCT 59.959 45.833 0.00 0.00 0.00 4.00
3903 3996 4.040461 TCCTTATAGCCTGCTTATGTCACC 59.960 45.833 0.00 0.00 0.00 4.02
3904 3997 4.991687 GTCCTTATAGCCTGCTTATGTCAC 59.008 45.833 0.00 0.00 0.00 3.67
3905 3998 4.901849 AGTCCTTATAGCCTGCTTATGTCA 59.098 41.667 0.00 0.00 0.00 3.58
3906 3999 5.476091 AGTCCTTATAGCCTGCTTATGTC 57.524 43.478 0.00 0.00 0.00 3.06
3907 4000 6.315714 TCTAGTCCTTATAGCCTGCTTATGT 58.684 40.000 0.00 0.00 0.00 2.29
3908 4001 6.842437 TCTAGTCCTTATAGCCTGCTTATG 57.158 41.667 0.00 0.00 0.00 1.90
3909 4002 9.722317 ATATTCTAGTCCTTATAGCCTGCTTAT 57.278 33.333 0.00 0.00 0.00 1.73
3910 4003 9.548631 AATATTCTAGTCCTTATAGCCTGCTTA 57.451 33.333 0.00 0.00 0.00 3.09
3911 4004 8.442660 AATATTCTAGTCCTTATAGCCTGCTT 57.557 34.615 0.00 0.00 0.00 3.91
3912 4005 9.722317 ATAATATTCTAGTCCTTATAGCCTGCT 57.278 33.333 0.00 0.00 0.00 4.24
3935 4028 9.823647 CTCTCCTTCAACTAAGCAAAGATATAA 57.176 33.333 0.00 0.00 33.49 0.98
3936 4029 9.201989 TCTCTCCTTCAACTAAGCAAAGATATA 57.798 33.333 0.00 0.00 33.49 0.86
3937 4030 8.083828 TCTCTCCTTCAACTAAGCAAAGATAT 57.916 34.615 0.00 0.00 33.49 1.63
3938 4031 7.397476 TCTCTCTCCTTCAACTAAGCAAAGATA 59.603 37.037 0.00 0.00 33.49 1.98
3939 4032 6.212388 TCTCTCTCCTTCAACTAAGCAAAGAT 59.788 38.462 0.00 0.00 33.49 2.40
3940 4033 5.540337 TCTCTCTCCTTCAACTAAGCAAAGA 59.460 40.000 0.00 0.00 33.49 2.52
3941 4034 5.788450 TCTCTCTCCTTCAACTAAGCAAAG 58.212 41.667 0.00 0.00 33.49 2.77
3942 4035 5.808366 TCTCTCTCCTTCAACTAAGCAAA 57.192 39.130 0.00 0.00 33.49 3.68
3943 4036 5.540337 TCTTCTCTCTCCTTCAACTAAGCAA 59.460 40.000 0.00 0.00 33.49 3.91
3944 4037 5.080337 TCTTCTCTCTCCTTCAACTAAGCA 58.920 41.667 0.00 0.00 33.49 3.91
3945 4038 5.394115 CCTCTTCTCTCTCCTTCAACTAAGC 60.394 48.000 0.00 0.00 33.49 3.09
3946 4039 5.949354 TCCTCTTCTCTCTCCTTCAACTAAG 59.051 44.000 0.00 0.00 34.73 2.18
3947 4040 5.893500 TCCTCTTCTCTCTCCTTCAACTAA 58.106 41.667 0.00 0.00 0.00 2.24
3948 4041 5.251932 TCTCCTCTTCTCTCTCCTTCAACTA 59.748 44.000 0.00 0.00 0.00 2.24
3949 4042 4.044065 TCTCCTCTTCTCTCTCCTTCAACT 59.956 45.833 0.00 0.00 0.00 3.16
3950 4043 4.340617 TCTCCTCTTCTCTCTCCTTCAAC 58.659 47.826 0.00 0.00 0.00 3.18
3951 4044 4.290985 TCTCTCCTCTTCTCTCTCCTTCAA 59.709 45.833 0.00 0.00 0.00 2.69
3952 4045 3.849574 TCTCTCCTCTTCTCTCTCCTTCA 59.150 47.826 0.00 0.00 0.00 3.02
3953 4046 4.455606 CTCTCTCCTCTTCTCTCTCCTTC 58.544 52.174 0.00 0.00 0.00 3.46
3954 4047 3.203040 CCTCTCTCCTCTTCTCTCTCCTT 59.797 52.174 0.00 0.00 0.00 3.36
3955 4048 2.780010 CCTCTCTCCTCTTCTCTCTCCT 59.220 54.545 0.00 0.00 0.00 3.69
3956 4049 2.777692 TCCTCTCTCCTCTTCTCTCTCC 59.222 54.545 0.00 0.00 0.00 3.71
3957 4050 3.711704 TCTCCTCTCTCCTCTTCTCTCTC 59.288 52.174 0.00 0.00 0.00 3.20
3958 4051 3.713764 CTCTCCTCTCTCCTCTTCTCTCT 59.286 52.174 0.00 0.00 0.00 3.10
3959 4052 3.711704 TCTCTCCTCTCTCCTCTTCTCTC 59.288 52.174 0.00 0.00 0.00 3.20
3960 4053 3.736094 TCTCTCCTCTCTCCTCTTCTCT 58.264 50.000 0.00 0.00 0.00 3.10
3961 4054 4.455606 CTTCTCTCCTCTCTCCTCTTCTC 58.544 52.174 0.00 0.00 0.00 2.87
3962 4055 3.372025 GCTTCTCTCCTCTCTCCTCTTCT 60.372 52.174 0.00 0.00 0.00 2.85
3963 4056 2.952310 GCTTCTCTCCTCTCTCCTCTTC 59.048 54.545 0.00 0.00 0.00 2.87
3964 4057 2.683742 CGCTTCTCTCCTCTCTCCTCTT 60.684 54.545 0.00 0.00 0.00 2.85
3965 4058 1.134098 CGCTTCTCTCCTCTCTCCTCT 60.134 57.143 0.00 0.00 0.00 3.69
3966 4059 1.308998 CGCTTCTCTCCTCTCTCCTC 58.691 60.000 0.00 0.00 0.00 3.71
3967 4060 0.106719 CCGCTTCTCTCCTCTCTCCT 60.107 60.000 0.00 0.00 0.00 3.69
3968 4061 0.106918 TCCGCTTCTCTCCTCTCTCC 60.107 60.000 0.00 0.00 0.00 3.71
3969 4062 1.021968 GTCCGCTTCTCTCCTCTCTC 58.978 60.000 0.00 0.00 0.00 3.20
3970 4063 0.623723 AGTCCGCTTCTCTCCTCTCT 59.376 55.000 0.00 0.00 0.00 3.10
3971 4064 1.021968 GAGTCCGCTTCTCTCCTCTC 58.978 60.000 0.00 0.00 0.00 3.20
3972 4065 0.623723 AGAGTCCGCTTCTCTCCTCT 59.376 55.000 0.00 0.00 37.70 3.69
3973 4066 1.134175 CAAGAGTCCGCTTCTCTCCTC 59.866 57.143 0.00 0.00 40.79 3.71
3974 4067 1.181786 CAAGAGTCCGCTTCTCTCCT 58.818 55.000 0.00 0.00 40.79 3.69
3975 4068 0.174617 CCAAGAGTCCGCTTCTCTCC 59.825 60.000 0.00 0.00 40.79 3.71
3976 4069 0.892063 ACCAAGAGTCCGCTTCTCTC 59.108 55.000 0.00 0.00 40.79 3.20
3977 4070 1.343069 AACCAAGAGTCCGCTTCTCT 58.657 50.000 0.00 0.00 43.09 3.10
3978 4071 2.231721 ACTAACCAAGAGTCCGCTTCTC 59.768 50.000 0.00 0.00 0.00 2.87
3979 4072 2.249139 ACTAACCAAGAGTCCGCTTCT 58.751 47.619 0.00 0.00 0.00 2.85
3980 4073 2.745515 ACTAACCAAGAGTCCGCTTC 57.254 50.000 0.00 0.00 0.00 3.86
3981 4074 2.094130 GCTACTAACCAAGAGTCCGCTT 60.094 50.000 0.00 0.00 0.00 4.68
3982 4075 1.477295 GCTACTAACCAAGAGTCCGCT 59.523 52.381 0.00 0.00 0.00 5.52
3983 4076 1.471153 GGCTACTAACCAAGAGTCCGC 60.471 57.143 0.00 0.00 0.00 5.54
3984 4077 1.202268 CGGCTACTAACCAAGAGTCCG 60.202 57.143 0.00 0.00 0.00 4.79
3985 4078 1.136500 CCGGCTACTAACCAAGAGTCC 59.864 57.143 0.00 0.00 0.00 3.85
3986 4079 1.471153 GCCGGCTACTAACCAAGAGTC 60.471 57.143 22.15 0.00 0.00 3.36
3987 4080 0.535797 GCCGGCTACTAACCAAGAGT 59.464 55.000 22.15 0.00 0.00 3.24
3988 4081 0.824759 AGCCGGCTACTAACCAAGAG 59.175 55.000 31.86 0.00 0.00 2.85
3989 4082 0.822164 GAGCCGGCTACTAACCAAGA 59.178 55.000 32.97 0.00 0.00 3.02
3990 4083 0.824759 AGAGCCGGCTACTAACCAAG 59.175 55.000 32.97 0.00 0.00 3.61
3991 4084 2.029623 CTAGAGCCGGCTACTAACCAA 58.970 52.381 32.97 11.48 0.00 3.67
3992 4085 1.688772 CTAGAGCCGGCTACTAACCA 58.311 55.000 32.97 11.84 0.00 3.67
3993 4086 0.314618 GCTAGAGCCGGCTACTAACC 59.685 60.000 32.97 16.49 34.31 2.85
3994 4087 1.030457 TGCTAGAGCCGGCTACTAAC 58.970 55.000 32.97 24.64 41.18 2.34
3995 4088 1.030457 GTGCTAGAGCCGGCTACTAA 58.970 55.000 32.97 14.86 41.18 2.24
3996 4089 1.164662 CGTGCTAGAGCCGGCTACTA 61.165 60.000 32.97 27.61 41.18 1.82
3997 4090 2.482333 CGTGCTAGAGCCGGCTACT 61.482 63.158 32.97 27.98 41.18 2.57
3998 4091 2.026301 CGTGCTAGAGCCGGCTAC 59.974 66.667 32.97 22.68 41.18 3.58
3999 4092 2.124445 TCGTGCTAGAGCCGGCTA 60.124 61.111 32.97 14.96 41.18 3.93
4000 4093 3.522731 CTCGTGCTAGAGCCGGCT 61.523 66.667 33.48 33.48 41.18 5.52
4001 4094 3.518998 TCTCGTGCTAGAGCCGGC 61.519 66.667 21.89 21.89 41.18 6.13
4002 4095 2.409651 GTCTCGTGCTAGAGCCGG 59.590 66.667 0.00 0.00 41.18 6.13
4003 4096 2.409651 GGTCTCGTGCTAGAGCCG 59.590 66.667 0.00 2.80 41.18 5.52
4005 4098 0.179124 CTTGGGTCTCGTGCTAGAGC 60.179 60.000 0.00 0.00 42.10 4.09
4006 4099 1.133407 GTCTTGGGTCTCGTGCTAGAG 59.867 57.143 0.00 3.13 39.52 2.43
4007 4100 1.174783 GTCTTGGGTCTCGTGCTAGA 58.825 55.000 0.00 0.00 0.00 2.43
4008 4101 0.179161 CGTCTTGGGTCTCGTGCTAG 60.179 60.000 0.00 0.00 0.00 3.42
4009 4102 1.880894 CGTCTTGGGTCTCGTGCTA 59.119 57.895 0.00 0.00 0.00 3.49
4010 4103 2.651361 CGTCTTGGGTCTCGTGCT 59.349 61.111 0.00 0.00 0.00 4.40
4011 4104 3.112709 GCGTCTTGGGTCTCGTGC 61.113 66.667 0.00 0.00 0.00 5.34
4012 4105 0.600255 AAAGCGTCTTGGGTCTCGTG 60.600 55.000 0.00 0.00 0.00 4.35
4013 4106 0.600255 CAAAGCGTCTTGGGTCTCGT 60.600 55.000 0.00 0.00 0.00 4.18
4014 4107 0.600255 ACAAAGCGTCTTGGGTCTCG 60.600 55.000 4.08 0.00 0.00 4.04
4015 4108 0.868406 CACAAAGCGTCTTGGGTCTC 59.132 55.000 4.08 0.00 0.00 3.36
4016 4109 0.468226 TCACAAAGCGTCTTGGGTCT 59.532 50.000 1.58 0.00 31.30 3.85
4017 4110 0.868406 CTCACAAAGCGTCTTGGGTC 59.132 55.000 1.58 0.00 31.30 4.46
4018 4111 0.535102 CCTCACAAAGCGTCTTGGGT 60.535 55.000 1.58 0.00 31.30 4.51
4019 4112 0.535102 ACCTCACAAAGCGTCTTGGG 60.535 55.000 4.08 0.00 0.00 4.12
4020 4113 1.002468 CAACCTCACAAAGCGTCTTGG 60.002 52.381 4.08 0.00 0.00 3.61
4021 4114 1.670811 ACAACCTCACAAAGCGTCTTG 59.329 47.619 0.00 0.00 0.00 3.02
4022 4115 2.038387 ACAACCTCACAAAGCGTCTT 57.962 45.000 0.00 0.00 0.00 3.01
4023 4116 2.902705 TACAACCTCACAAAGCGTCT 57.097 45.000 0.00 0.00 0.00 4.18
4024 4117 2.223377 CCTTACAACCTCACAAAGCGTC 59.777 50.000 0.00 0.00 0.00 5.19
4025 4118 2.218603 CCTTACAACCTCACAAAGCGT 58.781 47.619 0.00 0.00 0.00 5.07
4026 4119 2.032030 CACCTTACAACCTCACAAAGCG 60.032 50.000 0.00 0.00 0.00 4.68
4027 4120 2.293399 CCACCTTACAACCTCACAAAGC 59.707 50.000 0.00 0.00 0.00 3.51
4028 4121 2.884639 CCCACCTTACAACCTCACAAAG 59.115 50.000 0.00 0.00 0.00 2.77
4029 4122 2.242708 ACCCACCTTACAACCTCACAAA 59.757 45.455 0.00 0.00 0.00 2.83
4030 4123 1.847737 ACCCACCTTACAACCTCACAA 59.152 47.619 0.00 0.00 0.00 3.33
4031 4124 1.418637 GACCCACCTTACAACCTCACA 59.581 52.381 0.00 0.00 0.00 3.58
4032 4125 1.418637 TGACCCACCTTACAACCTCAC 59.581 52.381 0.00 0.00 0.00 3.51
4033 4126 1.809133 TGACCCACCTTACAACCTCA 58.191 50.000 0.00 0.00 0.00 3.86
4034 4127 2.105993 AGTTGACCCACCTTACAACCTC 59.894 50.000 0.00 0.00 42.05 3.85
4035 4128 2.132686 AGTTGACCCACCTTACAACCT 58.867 47.619 0.00 0.00 42.05 3.50
4036 4129 2.651382 AGTTGACCCACCTTACAACC 57.349 50.000 0.00 0.00 42.05 3.77
4037 4130 4.347360 AGTAGTTGACCCACCTTACAAC 57.653 45.455 0.00 0.00 41.61 3.32
4038 4131 6.270463 TCATTAGTAGTTGACCCACCTTACAA 59.730 38.462 0.00 0.00 0.00 2.41
4039 4132 5.781306 TCATTAGTAGTTGACCCACCTTACA 59.219 40.000 0.00 0.00 0.00 2.41
4040 4133 6.290294 TCATTAGTAGTTGACCCACCTTAC 57.710 41.667 0.00 0.00 0.00 2.34
4041 4134 6.499350 ACTTCATTAGTAGTTGACCCACCTTA 59.501 38.462 0.00 0.00 34.56 2.69
4042 4135 5.309806 ACTTCATTAGTAGTTGACCCACCTT 59.690 40.000 0.00 0.00 34.56 3.50
4043 4136 4.844655 ACTTCATTAGTAGTTGACCCACCT 59.155 41.667 0.00 0.00 34.56 4.00
4044 4137 5.161943 ACTTCATTAGTAGTTGACCCACC 57.838 43.478 0.00 0.00 34.56 4.61
4076 4169 7.548075 GCCGGCATGTACAATAGTAAGTTATAT 59.452 37.037 24.80 0.00 30.67 0.86
4077 4170 6.869913 GCCGGCATGTACAATAGTAAGTTATA 59.130 38.462 24.80 0.00 30.67 0.98
4078 4171 5.699458 GCCGGCATGTACAATAGTAAGTTAT 59.301 40.000 24.80 0.00 30.67 1.89
4079 4172 5.051816 GCCGGCATGTACAATAGTAAGTTA 58.948 41.667 24.80 0.00 30.67 2.24
4080 4173 3.875134 GCCGGCATGTACAATAGTAAGTT 59.125 43.478 24.80 0.00 30.67 2.66
4081 4174 3.134081 AGCCGGCATGTACAATAGTAAGT 59.866 43.478 31.54 0.00 30.67 2.24
4082 4175 3.728845 AGCCGGCATGTACAATAGTAAG 58.271 45.455 31.54 0.00 30.67 2.34
4083 4176 3.830744 AGCCGGCATGTACAATAGTAA 57.169 42.857 31.54 0.00 30.67 2.24
4084 4177 3.637694 TGTAGCCGGCATGTACAATAGTA 59.362 43.478 31.54 4.10 0.00 1.82
4085 4178 2.432874 TGTAGCCGGCATGTACAATAGT 59.567 45.455 31.54 5.27 0.00 2.12
4086 4179 3.106242 TGTAGCCGGCATGTACAATAG 57.894 47.619 31.54 0.00 0.00 1.73
4087 4180 3.462982 CTTGTAGCCGGCATGTACAATA 58.537 45.455 29.29 15.75 36.37 1.90
4088 4181 2.288666 CTTGTAGCCGGCATGTACAAT 58.711 47.619 29.29 12.10 36.37 2.71
4089 4182 1.677518 CCTTGTAGCCGGCATGTACAA 60.678 52.381 31.54 29.34 35.77 2.41
4090 4183 0.107897 CCTTGTAGCCGGCATGTACA 60.108 55.000 31.54 24.78 0.00 2.90
4091 4184 0.107848 ACCTTGTAGCCGGCATGTAC 60.108 55.000 31.54 22.36 0.00 2.90
4092 4185 0.616371 AACCTTGTAGCCGGCATGTA 59.384 50.000 31.54 9.92 0.00 2.29
4093 4186 0.960364 CAACCTTGTAGCCGGCATGT 60.960 55.000 31.54 11.17 0.00 3.21
4094 4187 1.656818 CCAACCTTGTAGCCGGCATG 61.657 60.000 31.54 12.93 0.00 4.06
4095 4188 1.378514 CCAACCTTGTAGCCGGCAT 60.379 57.895 31.54 16.46 0.00 4.40
4096 4189 2.033448 CCAACCTTGTAGCCGGCA 59.967 61.111 31.54 12.31 0.00 5.69
4097 4190 3.440415 GCCAACCTTGTAGCCGGC 61.440 66.667 21.89 21.89 0.00 6.13
4098 4191 2.040544 CAGCCAACCTTGTAGCCGG 61.041 63.158 0.00 0.00 0.00 6.13
4099 4192 0.036765 TACAGCCAACCTTGTAGCCG 60.037 55.000 0.00 0.00 0.00 5.52
4100 4193 1.278127 TCTACAGCCAACCTTGTAGCC 59.722 52.381 6.75 0.00 35.51 3.93
4101 4194 2.762535 TCTACAGCCAACCTTGTAGC 57.237 50.000 6.75 0.00 35.51 3.58
4102 4195 4.184629 GTCATCTACAGCCAACCTTGTAG 58.815 47.826 5.52 5.52 36.51 2.74
4103 4196 3.580895 TGTCATCTACAGCCAACCTTGTA 59.419 43.478 0.00 0.00 33.01 2.41
4104 4197 2.371841 TGTCATCTACAGCCAACCTTGT 59.628 45.455 0.00 0.00 33.01 3.16
4105 4198 3.057969 TGTCATCTACAGCCAACCTTG 57.942 47.619 0.00 0.00 33.01 3.61
4106 4199 3.614092 CATGTCATCTACAGCCAACCTT 58.386 45.455 0.00 0.00 42.70 3.50
4107 4200 2.681976 GCATGTCATCTACAGCCAACCT 60.682 50.000 0.00 0.00 42.70 3.50
4108 4201 1.672881 GCATGTCATCTACAGCCAACC 59.327 52.381 0.00 0.00 42.70 3.77
4109 4202 1.672881 GGCATGTCATCTACAGCCAAC 59.327 52.381 6.30 0.00 44.86 3.77
4110 4203 2.042686 GGCATGTCATCTACAGCCAA 57.957 50.000 6.30 0.00 44.86 4.52
4111 4204 3.786656 GGCATGTCATCTACAGCCA 57.213 52.632 6.30 0.00 44.86 4.75
4112 4205 1.672881 GTTGGCATGTCATCTACAGCC 59.327 52.381 0.00 4.52 45.31 4.85
4113 4206 2.611292 GAGTTGGCATGTCATCTACAGC 59.389 50.000 10.80 0.00 42.70 4.40
4114 4207 3.118482 AGGAGTTGGCATGTCATCTACAG 60.118 47.826 20.20 0.00 42.70 2.74
4115 4208 2.840038 AGGAGTTGGCATGTCATCTACA 59.160 45.455 20.20 0.00 43.86 2.74
4116 4209 3.550437 AGGAGTTGGCATGTCATCTAC 57.450 47.619 11.99 11.99 0.00 2.59
4117 4210 5.894298 ATAAGGAGTTGGCATGTCATCTA 57.106 39.130 10.80 0.00 0.00 1.98
4118 4211 4.785346 ATAAGGAGTTGGCATGTCATCT 57.215 40.909 10.63 10.63 0.00 2.90
4119 4212 4.453819 GCTATAAGGAGTTGGCATGTCATC 59.546 45.833 0.00 0.00 0.00 2.92
4120 4213 4.392940 GCTATAAGGAGTTGGCATGTCAT 58.607 43.478 0.00 0.00 0.00 3.06
4121 4214 3.433598 GGCTATAAGGAGTTGGCATGTCA 60.434 47.826 0.00 0.00 0.00 3.58
4122 4215 3.142174 GGCTATAAGGAGTTGGCATGTC 58.858 50.000 0.00 0.00 0.00 3.06
4123 4216 2.485479 CGGCTATAAGGAGTTGGCATGT 60.485 50.000 0.00 0.00 0.00 3.21
4124 4217 2.146342 CGGCTATAAGGAGTTGGCATG 58.854 52.381 0.00 0.00 0.00 4.06
4125 4218 2.047061 TCGGCTATAAGGAGTTGGCAT 58.953 47.619 0.00 0.00 0.00 4.40
4126 4219 1.491668 TCGGCTATAAGGAGTTGGCA 58.508 50.000 0.00 0.00 0.00 4.92
4127 4220 2.808543 CAATCGGCTATAAGGAGTTGGC 59.191 50.000 0.00 0.00 0.00 4.52
4128 4221 2.808543 GCAATCGGCTATAAGGAGTTGG 59.191 50.000 0.00 0.00 40.25 3.77
4142 4235 6.597672 TGGTTAATAATATAGCCAGCAATCGG 59.402 38.462 0.00 0.00 32.02 4.18
4143 4236 7.609760 TGGTTAATAATATAGCCAGCAATCG 57.390 36.000 0.00 0.00 32.02 3.34
4144 4237 7.917505 GCATGGTTAATAATATAGCCAGCAATC 59.082 37.037 0.00 0.00 39.18 2.67
4145 4238 7.616935 AGCATGGTTAATAATATAGCCAGCAAT 59.383 33.333 0.00 0.00 39.18 3.56
4146 4239 6.947733 AGCATGGTTAATAATATAGCCAGCAA 59.052 34.615 0.00 0.00 39.18 3.91
4147 4240 6.484288 AGCATGGTTAATAATATAGCCAGCA 58.516 36.000 0.00 0.00 39.18 4.41
4148 4241 6.825721 AGAGCATGGTTAATAATATAGCCAGC 59.174 38.462 0.00 0.00 39.18 4.85
4149 4242 9.890629 TTAGAGCATGGTTAATAATATAGCCAG 57.109 33.333 0.00 0.00 39.18 4.85
4150 4243 9.890629 CTTAGAGCATGGTTAATAATATAGCCA 57.109 33.333 0.00 0.00 39.96 4.75
4151 4244 9.892130 ACTTAGAGCATGGTTAATAATATAGCC 57.108 33.333 0.00 0.00 0.00 3.93
4155 4248 8.329502 GGGGACTTAGAGCATGGTTAATAATAT 58.670 37.037 0.00 0.00 0.00 1.28
4156 4249 7.293771 TGGGGACTTAGAGCATGGTTAATAATA 59.706 37.037 0.00 0.00 0.00 0.98
4157 4250 6.102615 TGGGGACTTAGAGCATGGTTAATAAT 59.897 38.462 0.00 0.00 0.00 1.28
4158 4251 5.430417 TGGGGACTTAGAGCATGGTTAATAA 59.570 40.000 0.00 0.00 0.00 1.40
4159 4252 4.972568 TGGGGACTTAGAGCATGGTTAATA 59.027 41.667 0.00 0.00 0.00 0.98
4160 4253 3.785887 TGGGGACTTAGAGCATGGTTAAT 59.214 43.478 0.00 0.00 0.00 1.40
4161 4254 3.186283 TGGGGACTTAGAGCATGGTTAA 58.814 45.455 0.00 0.00 0.00 2.01
4162 4255 2.840511 TGGGGACTTAGAGCATGGTTA 58.159 47.619 0.00 0.00 0.00 2.85
4163 4256 1.668826 TGGGGACTTAGAGCATGGTT 58.331 50.000 0.00 0.00 0.00 3.67
4164 4257 1.898863 ATGGGGACTTAGAGCATGGT 58.101 50.000 0.00 0.00 0.00 3.55
4165 4258 2.579873 CAATGGGGACTTAGAGCATGG 58.420 52.381 0.00 0.00 0.00 3.66
4166 4259 1.952296 GCAATGGGGACTTAGAGCATG 59.048 52.381 0.00 0.00 0.00 4.06
4167 4260 1.565759 TGCAATGGGGACTTAGAGCAT 59.434 47.619 0.00 0.00 0.00 3.79
4168 4261 0.991146 TGCAATGGGGACTTAGAGCA 59.009 50.000 0.00 0.00 0.00 4.26
4169 4262 1.952296 CATGCAATGGGGACTTAGAGC 59.048 52.381 0.00 0.00 41.79 4.09
4170 4263 3.565764 TCATGCAATGGGGACTTAGAG 57.434 47.619 0.00 0.00 46.73 2.43
4171 4264 4.524802 AATCATGCAATGGGGACTTAGA 57.475 40.909 0.00 0.00 46.73 2.10
4172 4265 5.240183 CACTAATCATGCAATGGGGACTTAG 59.760 44.000 0.00 0.00 46.73 2.18
4173 4266 5.104151 TCACTAATCATGCAATGGGGACTTA 60.104 40.000 0.00 0.00 46.73 2.24
4174 4267 3.956199 CACTAATCATGCAATGGGGACTT 59.044 43.478 0.00 0.00 46.73 3.01
4452 4554 5.129368 ACCTGCAAATTACCATGGATAGT 57.871 39.130 21.47 1.38 0.00 2.12
4483 4585 0.179468 TGGGCGGACTAGCATAAACC 59.821 55.000 0.00 0.00 39.27 3.27
4493 4595 0.988832 TGGTTTAAGATGGGCGGACT 59.011 50.000 0.00 0.00 0.00 3.85
4498 4600 2.562738 ACAGCTTTGGTTTAAGATGGGC 59.437 45.455 6.58 0.00 43.83 5.36
4555 4660 6.079712 ACTGAATTTGGAGGCCTTAGTATT 57.920 37.500 6.77 5.22 0.00 1.89
4577 4682 1.001706 GAACAAAGTTTGCTCCCCGAC 60.002 52.381 15.59 0.00 0.00 4.79
4603 4708 9.787435 AAAGTGTCAAGTGGTAAATATCTTGTA 57.213 29.630 0.00 0.00 38.53 2.41
4610 4715 9.653287 CTCTGATAAAGTGTCAAGTGGTAAATA 57.347 33.333 0.00 0.00 0.00 1.40
4620 4725 4.383118 GGGCTAGCTCTGATAAAGTGTCAA 60.383 45.833 15.72 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.