Multiple sequence alignment - TraesCS5A01G527600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G527600 chr5A 100.000 5715 0 0 454 6168 688137952 688143666 0.000000e+00 10554.0
1 TraesCS5A01G527600 chr5A 100.000 239 0 0 1 239 688137499 688137737 5.670000e-120 442.0
2 TraesCS5A01G527600 chr4B 91.283 5059 265 75 814 5802 649470868 649475820 0.000000e+00 6737.0
3 TraesCS5A01G527600 chr4B 88.664 247 14 8 1 239 649470405 649470645 7.820000e-74 289.0
4 TraesCS5A01G527600 chr4D 92.547 2093 94 21 4015 6097 503620679 503622719 0.000000e+00 2944.0
5 TraesCS5A01G527600 chr4D 93.740 1214 49 15 2730 3926 503619111 503620314 0.000000e+00 1796.0
6 TraesCS5A01G527600 chr4D 91.294 1321 68 22 814 2094 503617116 503618429 0.000000e+00 1759.0
7 TraesCS5A01G527600 chr4D 96.341 574 20 1 2044 2617 503618440 503619012 0.000000e+00 942.0
8 TraesCS5A01G527600 chr4D 91.011 178 13 2 5994 6168 503622760 503622937 2.870000e-58 237.0
9 TraesCS5A01G527600 chr4D 84.184 196 13 10 54 239 503616699 503616886 2.290000e-39 174.0
10 TraesCS5A01G527600 chr4D 96.875 32 0 1 460 491 27753306 27753276 1.100000e-02 52.8
11 TraesCS5A01G527600 chr4D 96.875 32 0 1 460 491 508076219 508076249 1.100000e-02 52.8
12 TraesCS5A01G527600 chr3A 87.699 943 88 18 4118 5057 212113608 212112691 0.000000e+00 1074.0
13 TraesCS5A01G527600 chr3A 86.579 760 73 20 2726 3478 212114737 212114000 0.000000e+00 811.0
14 TraesCS5A01G527600 chr3A 88.312 462 54 0 2161 2622 212130545 212130084 6.990000e-154 555.0
15 TraesCS5A01G527600 chr3A 98.221 281 5 0 532 812 740325725 740325445 5.560000e-135 492.0
16 TraesCS5A01G527600 chr3A 87.931 406 38 7 3506 3908 212114012 212113615 9.360000e-128 468.0
17 TraesCS5A01G527600 chr3A 82.910 433 58 10 1268 1695 212131687 212131266 5.840000e-100 375.0
18 TraesCS5A01G527600 chr3A 88.435 147 15 2 1887 2032 265374136 265373991 6.350000e-40 176.0
19 TraesCS5A01G527600 chr3A 97.143 35 1 0 2664 2698 212114811 212114777 6.680000e-05 60.2
20 TraesCS5A01G527600 chr3A 96.875 32 0 1 460 491 75808232 75808262 1.100000e-02 52.8
21 TraesCS5A01G527600 chr3A 100.000 28 0 0 2079 2106 744438516 744438489 1.100000e-02 52.8
22 TraesCS5A01G527600 chr3D 87.807 935 89 16 4123 5057 173709143 173708234 0.000000e+00 1072.0
23 TraesCS5A01G527600 chr3D 86.693 759 74 20 2726 3478 173710276 173709539 0.000000e+00 817.0
24 TraesCS5A01G527600 chr3D 88.745 462 52 0 2161 2622 173714120 173713659 3.230000e-157 566.0
25 TraesCS5A01G527600 chr3D 79.648 796 98 29 1273 2037 501271450 501270688 1.190000e-141 514.0
26 TraesCS5A01G527600 chr3D 87.901 405 39 6 3506 3908 173709551 173709155 9.360000e-128 468.0
27 TraesCS5A01G527600 chr3D 83.566 286 25 9 1757 2032 173714444 173714171 1.330000e-61 248.0
28 TraesCS5A01G527600 chr3D 100.000 28 0 0 2079 2106 547429672 547429645 1.100000e-02 52.8
29 TraesCS5A01G527600 chr3B 87.633 938 88 18 4123 5057 252589550 252588638 0.000000e+00 1064.0
30 TraesCS5A01G527600 chr3B 86.447 760 74 22 2726 3478 252590683 252589946 0.000000e+00 806.0
31 TraesCS5A01G527600 chr3B 88.528 462 53 0 2161 2622 252594630 252594169 1.500000e-155 560.0
32 TraesCS5A01G527600 chr3B 87.901 405 39 6 3506 3908 252589958 252589562 9.360000e-128 468.0
33 TraesCS5A01G527600 chr3B 83.217 286 26 8 1757 2032 252594954 252594681 6.180000e-60 243.0
34 TraesCS5A01G527600 chr6B 79.806 1030 127 35 1045 2032 535442494 535443484 0.000000e+00 675.0
35 TraesCS5A01G527600 chr6B 81.122 731 94 22 1045 1746 661072737 661072022 4.200000e-151 545.0
36 TraesCS5A01G527600 chr6B 85.521 518 39 18 4822 5337 704524588 704524105 5.520000e-140 508.0
37 TraesCS5A01G527600 chr6B 98.921 278 3 0 535 812 558600657 558600380 1.190000e-136 497.0
38 TraesCS5A01G527600 chr6B 90.196 153 13 2 1887 2037 661066724 661066572 1.360000e-46 198.0
39 TraesCS5A01G527600 chr6A 86.422 626 68 11 5541 6151 609056737 609057360 0.000000e+00 669.0
40 TraesCS5A01G527600 chr6A 89.608 510 41 5 4618 5127 609055864 609056361 6.740000e-179 638.0
41 TraesCS5A01G527600 chr6A 98.925 279 3 0 534 812 270463008 270462730 3.320000e-137 499.0
42 TraesCS5A01G527600 chr6A 96.875 32 0 1 460 491 299162858 299162828 1.100000e-02 52.8
43 TraesCS5A01G527600 chr6D 78.732 1025 131 36 1045 2024 410108755 410107773 6.840000e-169 604.0
44 TraesCS5A01G527600 chrUn 86.981 530 56 7 917 1444 236412599 236413117 8.910000e-163 584.0
45 TraesCS5A01G527600 chrUn 86.226 530 60 7 917 1444 35309340 35309858 4.170000e-156 562.0
46 TraesCS5A01G527600 chrUn 96.875 32 0 1 460 491 99457169 99457199 1.100000e-02 52.8
47 TraesCS5A01G527600 chr5B 98.925 279 3 0 534 812 523366855 523367133 3.320000e-137 499.0
48 TraesCS5A01G527600 chr5B 98.221 281 5 0 532 812 185509473 185509753 5.560000e-135 492.0
49 TraesCS5A01G527600 chr5B 98.208 279 5 0 534 812 58628878 58628600 7.190000e-134 488.0
50 TraesCS5A01G527600 chr5B 96.886 289 7 2 525 812 532347725 532348012 3.340000e-132 483.0
51 TraesCS5A01G527600 chr1A 97.872 282 5 1 532 812 586359416 586359697 2.580000e-133 486.0
52 TraesCS5A01G527600 chr1A 97.535 284 6 1 529 812 50926168 50925886 9.300000e-133 484.0
53 TraesCS5A01G527600 chr5D 96.875 32 0 1 460 491 508096799 508096769 1.100000e-02 52.8
54 TraesCS5A01G527600 chr2D 100.000 28 0 0 2079 2106 340258554 340258527 1.100000e-02 52.8
55 TraesCS5A01G527600 chr2D 96.875 32 0 1 460 491 487442483 487442453 1.100000e-02 52.8
56 TraesCS5A01G527600 chr1D 96.875 32 0 1 460 491 258934896 258934866 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G527600 chr5A 688137499 688143666 6167 False 5498.000000 10554 100.0000 1 6168 2 chr5A.!!$F1 6167
1 TraesCS5A01G527600 chr4B 649470405 649475820 5415 False 3513.000000 6737 89.9735 1 5802 2 chr4B.!!$F1 5801
2 TraesCS5A01G527600 chr4D 503616699 503622937 6238 False 1308.666667 2944 91.5195 54 6168 6 chr4D.!!$F2 6114
3 TraesCS5A01G527600 chr3A 212112691 212114811 2120 True 603.300000 1074 89.8380 2664 5057 4 chr3A.!!$R4 2393
4 TraesCS5A01G527600 chr3A 212130084 212131687 1603 True 465.000000 555 85.6110 1268 2622 2 chr3A.!!$R5 1354
5 TraesCS5A01G527600 chr3D 173708234 173714444 6210 True 634.200000 1072 86.9424 1757 5057 5 chr3D.!!$R3 3300
6 TraesCS5A01G527600 chr3D 501270688 501271450 762 True 514.000000 514 79.6480 1273 2037 1 chr3D.!!$R1 764
7 TraesCS5A01G527600 chr3B 252588638 252594954 6316 True 628.200000 1064 86.7452 1757 5057 5 chr3B.!!$R1 3300
8 TraesCS5A01G527600 chr6B 535442494 535443484 990 False 675.000000 675 79.8060 1045 2032 1 chr6B.!!$F1 987
9 TraesCS5A01G527600 chr6B 661072022 661072737 715 True 545.000000 545 81.1220 1045 1746 1 chr6B.!!$R3 701
10 TraesCS5A01G527600 chr6A 609055864 609057360 1496 False 653.500000 669 88.0150 4618 6151 2 chr6A.!!$F1 1533
11 TraesCS5A01G527600 chr6D 410107773 410108755 982 True 604.000000 604 78.7320 1045 2024 1 chr6D.!!$R1 979
12 TraesCS5A01G527600 chrUn 236412599 236413117 518 False 584.000000 584 86.9810 917 1444 1 chrUn.!!$F3 527
13 TraesCS5A01G527600 chrUn 35309340 35309858 518 False 562.000000 562 86.2260 917 1444 1 chrUn.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
810 853 0.037882 CTGGTCTGACGCACTCACAT 60.038 55.000 1.07 0.00 0.00 3.21 F
812 855 0.038251 GGTCTGACGCACTCACATGA 60.038 55.000 0.00 0.00 0.00 3.07 F
2426 2950 1.066430 TGGAAGTTCATCCAGTACCGC 60.066 52.381 5.01 0.00 44.52 5.68 F
2781 6717 0.602562 TAGTTTTGCATGCAGGTGCC 59.397 50.000 21.50 8.47 44.43 5.01 F
4418 8676 0.462581 TGCTCATCGGACTTGGCATC 60.463 55.000 0.00 0.00 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2119 2643 1.091771 AACCATGCCGCGAATCTCTG 61.092 55.000 8.23 0.0 0.0 3.35 R
2723 6646 2.033801 GCTGCTATTACCTGCACAATGG 59.966 50.000 0.00 0.0 35.2 3.16 R
4418 8676 1.452108 GATCAAAGGGGTGGCTCCG 60.452 63.158 0.00 0.0 37.0 4.63 R
4616 8877 0.179000 CCCCATCCTTGTCCTTCTCG 59.821 60.000 0.00 0.0 0.0 4.04 R
5995 10414 0.184933 ATGAGGAGGACGAGGAGGAG 59.815 60.000 0.00 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.573337 TGTCTCTCTCATGTAGTGATGTG 57.427 43.478 0.00 0.00 35.97 3.21
25 26 6.180472 TGTCTCTCTCATGTAGTGATGTGTA 58.820 40.000 0.00 0.00 35.97 2.90
26 27 6.830838 TGTCTCTCTCATGTAGTGATGTGTAT 59.169 38.462 0.00 0.00 35.97 2.29
27 28 7.340487 TGTCTCTCTCATGTAGTGATGTGTATT 59.660 37.037 0.00 0.00 35.97 1.89
28 29 8.194104 GTCTCTCTCATGTAGTGATGTGTATTT 58.806 37.037 0.00 0.00 35.97 1.40
29 30 9.408648 TCTCTCTCATGTAGTGATGTGTATTTA 57.591 33.333 0.00 0.00 35.97 1.40
62 63 5.429957 TTCTCTTTGCTCTTTGCTCTTTC 57.570 39.130 0.00 0.00 43.37 2.62
67 68 2.146342 TGCTCTTTGCTCTTTCCTTCG 58.854 47.619 0.00 0.00 43.37 3.79
78 79 2.628178 TCTTTCCTTCGTCTGCTGAGAA 59.372 45.455 0.00 0.06 0.00 2.87
138 148 5.281727 CCCCTTCGAGTTTTCAAAAAGAAG 58.718 41.667 13.16 13.16 37.57 2.85
142 152 4.528920 TCGAGTTTTCAAAAAGAAGGGGA 58.471 39.130 0.00 0.00 37.57 4.81
487 504 1.205417 TCCGTCCGGAATTACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
488 505 1.066716 CCGTCCGGAATTACTTGTCCA 60.067 52.381 5.23 0.00 37.50 4.02
499 542 6.039829 GGAATTACTTGTCCATCCATTTCTCC 59.960 42.308 0.00 0.00 33.79 3.71
501 544 2.292267 CTTGTCCATCCATTTCTCCGG 58.708 52.381 0.00 0.00 0.00 5.14
508 551 2.691409 TCCATTTCTCCGGCAAGTAG 57.309 50.000 0.00 0.00 0.00 2.57
531 574 2.732844 CGGAAGGAGGGAGTACTAGT 57.267 55.000 0.00 0.00 0.00 2.57
532 575 3.015675 CGGAAGGAGGGAGTACTAGTT 57.984 52.381 0.00 0.00 0.00 2.24
533 576 3.363627 CGGAAGGAGGGAGTACTAGTTT 58.636 50.000 0.00 0.00 0.00 2.66
534 577 3.768215 CGGAAGGAGGGAGTACTAGTTTT 59.232 47.826 0.00 0.00 0.00 2.43
535 578 4.222366 CGGAAGGAGGGAGTACTAGTTTTT 59.778 45.833 0.00 0.00 0.00 1.94
560 603 4.586306 TTTAGAAAAGGAGGATGACCCC 57.414 45.455 0.00 0.00 36.73 4.95
561 604 1.299939 AGAAAAGGAGGATGACCCCC 58.700 55.000 0.00 0.00 36.73 5.40
562 605 0.107165 GAAAAGGAGGATGACCCCCG 60.107 60.000 0.00 0.00 36.73 5.73
563 606 1.571773 AAAAGGAGGATGACCCCCGG 61.572 60.000 0.00 0.00 36.73 5.73
569 612 3.866582 GATGACCCCCGGCCTCTG 61.867 72.222 0.00 0.00 0.00 3.35
575 618 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
576 619 4.559063 CCCGGCCTCTGCATCTGG 62.559 72.222 0.00 0.00 40.13 3.86
577 620 4.559063 CCGGCCTCTGCATCTGGG 62.559 72.222 0.00 0.00 40.13 4.45
578 621 3.473647 CGGCCTCTGCATCTGGGA 61.474 66.667 0.00 0.00 40.13 4.37
579 622 2.509916 GGCCTCTGCATCTGGGAG 59.490 66.667 0.00 0.00 40.13 4.30
580 623 2.068821 GGCCTCTGCATCTGGGAGA 61.069 63.158 0.00 0.00 42.24 3.71
581 624 1.417288 GGCCTCTGCATCTGGGAGAT 61.417 60.000 0.00 0.00 43.58 2.75
590 633 3.238108 CATCTGGGAGATGTATACGGC 57.762 52.381 5.55 0.00 45.33 5.68
591 634 1.629043 TCTGGGAGATGTATACGGCC 58.371 55.000 0.00 0.00 0.00 6.13
592 635 1.133294 TCTGGGAGATGTATACGGCCA 60.133 52.381 2.24 0.00 0.00 5.36
593 636 1.000955 CTGGGAGATGTATACGGCCAC 59.999 57.143 2.24 0.00 0.00 5.01
594 637 1.339097 GGGAGATGTATACGGCCACT 58.661 55.000 2.24 0.00 0.00 4.00
595 638 1.692519 GGGAGATGTATACGGCCACTT 59.307 52.381 2.24 0.00 0.00 3.16
596 639 2.104281 GGGAGATGTATACGGCCACTTT 59.896 50.000 2.24 0.00 0.00 2.66
597 640 3.322828 GGGAGATGTATACGGCCACTTTA 59.677 47.826 2.24 0.00 0.00 1.85
598 641 4.020485 GGGAGATGTATACGGCCACTTTAT 60.020 45.833 2.24 0.00 0.00 1.40
599 642 5.512576 GGGAGATGTATACGGCCACTTTATT 60.513 44.000 2.24 0.00 0.00 1.40
600 643 5.408604 GGAGATGTATACGGCCACTTTATTG 59.591 44.000 2.24 0.00 0.00 1.90
601 644 6.169557 AGATGTATACGGCCACTTTATTGA 57.830 37.500 2.24 0.00 0.00 2.57
602 645 6.769512 AGATGTATACGGCCACTTTATTGAT 58.230 36.000 2.24 0.00 0.00 2.57
603 646 7.224297 AGATGTATACGGCCACTTTATTGATT 58.776 34.615 2.24 0.00 0.00 2.57
604 647 8.372459 AGATGTATACGGCCACTTTATTGATTA 58.628 33.333 2.24 0.00 0.00 1.75
605 648 9.162764 GATGTATACGGCCACTTTATTGATTAT 57.837 33.333 2.24 0.00 0.00 1.28
606 649 8.911918 TGTATACGGCCACTTTATTGATTATT 57.088 30.769 2.24 0.00 0.00 1.40
607 650 8.995220 TGTATACGGCCACTTTATTGATTATTC 58.005 33.333 2.24 0.00 0.00 1.75
608 651 9.216117 GTATACGGCCACTTTATTGATTATTCT 57.784 33.333 2.24 0.00 0.00 2.40
609 652 6.619801 ACGGCCACTTTATTGATTATTCTC 57.380 37.500 2.24 0.00 0.00 2.87
610 653 5.236478 ACGGCCACTTTATTGATTATTCTCG 59.764 40.000 2.24 0.00 0.00 4.04
611 654 5.465390 CGGCCACTTTATTGATTATTCTCGA 59.535 40.000 2.24 0.00 0.00 4.04
612 655 6.346919 CGGCCACTTTATTGATTATTCTCGAG 60.347 42.308 5.93 5.93 0.00 4.04
613 656 6.073003 GGCCACTTTATTGATTATTCTCGAGG 60.073 42.308 13.56 0.00 0.00 4.63
614 657 6.706270 GCCACTTTATTGATTATTCTCGAGGA 59.294 38.462 13.56 3.44 0.00 3.71
615 658 7.307455 GCCACTTTATTGATTATTCTCGAGGAC 60.307 40.741 13.56 0.00 0.00 3.85
616 659 7.171678 CCACTTTATTGATTATTCTCGAGGACC 59.828 40.741 13.56 0.00 0.00 4.46
617 660 7.928706 CACTTTATTGATTATTCTCGAGGACCT 59.071 37.037 13.56 0.00 0.00 3.85
618 661 8.487028 ACTTTATTGATTATTCTCGAGGACCTT 58.513 33.333 13.56 0.00 0.00 3.50
619 662 9.982651 CTTTATTGATTATTCTCGAGGACCTTA 57.017 33.333 13.56 0.00 0.00 2.69
620 663 9.760077 TTTATTGATTATTCTCGAGGACCTTAC 57.240 33.333 13.56 0.40 0.00 2.34
621 664 6.785337 TTGATTATTCTCGAGGACCTTACA 57.215 37.500 13.56 3.04 0.00 2.41
622 665 6.785337 TGATTATTCTCGAGGACCTTACAA 57.215 37.500 13.56 0.00 0.00 2.41
623 666 7.177832 TGATTATTCTCGAGGACCTTACAAA 57.822 36.000 13.56 0.00 0.00 2.83
624 667 7.265673 TGATTATTCTCGAGGACCTTACAAAG 58.734 38.462 13.56 0.00 0.00 2.77
625 668 6.600882 TTATTCTCGAGGACCTTACAAAGT 57.399 37.500 13.56 0.00 0.00 2.66
626 669 7.707624 TTATTCTCGAGGACCTTACAAAGTA 57.292 36.000 13.56 0.00 0.00 2.24
627 670 6.793505 ATTCTCGAGGACCTTACAAAGTAT 57.206 37.500 13.56 0.00 0.00 2.12
628 671 6.600882 TTCTCGAGGACCTTACAAAGTATT 57.399 37.500 13.56 0.00 0.00 1.89
629 672 7.707624 TTCTCGAGGACCTTACAAAGTATTA 57.292 36.000 13.56 0.00 0.00 0.98
630 673 7.093322 TCTCGAGGACCTTACAAAGTATTAC 57.907 40.000 13.56 0.00 0.00 1.89
631 674 6.660521 TCTCGAGGACCTTACAAAGTATTACA 59.339 38.462 13.56 0.00 0.00 2.41
632 675 7.177216 TCTCGAGGACCTTACAAAGTATTACAA 59.823 37.037 13.56 0.00 0.00 2.41
633 676 7.092716 TCGAGGACCTTACAAAGTATTACAAC 58.907 38.462 0.00 0.00 0.00 3.32
634 677 6.869913 CGAGGACCTTACAAAGTATTACAACA 59.130 38.462 0.00 0.00 0.00 3.33
635 678 7.385752 CGAGGACCTTACAAAGTATTACAACAA 59.614 37.037 0.00 0.00 0.00 2.83
636 679 9.227777 GAGGACCTTACAAAGTATTACAACAAT 57.772 33.333 0.00 0.00 0.00 2.71
641 684 9.730420 CCTTACAAAGTATTACAACAATATGCC 57.270 33.333 0.00 0.00 0.00 4.40
644 687 8.574251 ACAAAGTATTACAACAATATGCCTGA 57.426 30.769 0.00 0.00 0.00 3.86
645 688 9.019656 ACAAAGTATTACAACAATATGCCTGAA 57.980 29.630 0.00 0.00 0.00 3.02
648 691 8.396272 AGTATTACAACAATATGCCTGAATCC 57.604 34.615 0.00 0.00 0.00 3.01
649 692 5.749596 TTACAACAATATGCCTGAATCCG 57.250 39.130 0.00 0.00 0.00 4.18
650 693 2.358898 ACAACAATATGCCTGAATCCGC 59.641 45.455 0.00 0.00 0.00 5.54
651 694 1.609208 ACAATATGCCTGAATCCGCC 58.391 50.000 0.00 0.00 0.00 6.13
652 695 1.133823 ACAATATGCCTGAATCCGCCA 60.134 47.619 0.00 0.00 0.00 5.69
653 696 2.165167 CAATATGCCTGAATCCGCCAT 58.835 47.619 0.00 0.00 0.00 4.40
654 697 2.119801 ATATGCCTGAATCCGCCATC 57.880 50.000 0.00 0.00 0.00 3.51
655 698 1.059098 TATGCCTGAATCCGCCATCT 58.941 50.000 0.00 0.00 0.00 2.90
656 699 0.184451 ATGCCTGAATCCGCCATCTT 59.816 50.000 0.00 0.00 0.00 2.40
657 700 0.749091 TGCCTGAATCCGCCATCTTG 60.749 55.000 0.00 0.00 0.00 3.02
658 701 1.450531 GCCTGAATCCGCCATCTTGG 61.451 60.000 0.00 0.00 41.55 3.61
682 725 5.482908 CAACATATGCCACTACTCCTATCC 58.517 45.833 1.58 0.00 0.00 2.59
683 726 4.752063 ACATATGCCACTACTCCTATCCA 58.248 43.478 1.58 0.00 0.00 3.41
684 727 5.345418 ACATATGCCACTACTCCTATCCAT 58.655 41.667 1.58 0.00 0.00 3.41
685 728 6.503041 ACATATGCCACTACTCCTATCCATA 58.497 40.000 1.58 0.00 0.00 2.74
686 729 7.135522 ACATATGCCACTACTCCTATCCATAT 58.864 38.462 1.58 0.00 0.00 1.78
687 730 5.946942 ATGCCACTACTCCTATCCATATG 57.053 43.478 0.00 0.00 0.00 1.78
688 731 5.010708 TGCCACTACTCCTATCCATATGA 57.989 43.478 3.65 0.00 0.00 2.15
689 732 5.593786 TGCCACTACTCCTATCCATATGAT 58.406 41.667 3.65 0.00 37.49 2.45
690 733 5.423290 TGCCACTACTCCTATCCATATGATG 59.577 44.000 3.65 0.00 34.76 3.07
691 734 5.658634 GCCACTACTCCTATCCATATGATGA 59.341 44.000 3.65 0.00 34.76 2.92
692 735 6.155221 GCCACTACTCCTATCCATATGATGAA 59.845 42.308 3.65 0.00 34.76 2.57
693 736 7.632462 GCCACTACTCCTATCCATATGATGAAG 60.632 44.444 3.65 0.00 34.76 3.02
694 737 7.147759 CCACTACTCCTATCCATATGATGAAGG 60.148 44.444 3.65 5.74 34.76 3.46
695 738 6.900186 ACTACTCCTATCCATATGATGAAGGG 59.100 42.308 3.65 1.54 34.76 3.95
696 739 5.035556 ACTCCTATCCATATGATGAAGGGG 58.964 45.833 3.65 7.84 34.76 4.79
697 740 5.035556 CTCCTATCCATATGATGAAGGGGT 58.964 45.833 3.65 0.00 34.76 4.95
698 741 4.784838 TCCTATCCATATGATGAAGGGGTG 59.215 45.833 3.65 0.00 34.76 4.61
699 742 2.957402 TCCATATGATGAAGGGGTGC 57.043 50.000 3.65 0.00 0.00 5.01
700 743 2.421725 TCCATATGATGAAGGGGTGCT 58.578 47.619 3.65 0.00 0.00 4.40
701 744 3.597182 TCCATATGATGAAGGGGTGCTA 58.403 45.455 3.65 0.00 0.00 3.49
702 745 3.327757 TCCATATGATGAAGGGGTGCTAC 59.672 47.826 3.65 0.00 0.00 3.58
703 746 3.560025 CCATATGATGAAGGGGTGCTACC 60.560 52.174 3.65 0.00 37.60 3.18
704 747 1.898863 ATGATGAAGGGGTGCTACCT 58.101 50.000 5.48 0.00 38.64 3.08
705 748 0.911769 TGATGAAGGGGTGCTACCTG 59.088 55.000 5.48 0.00 38.63 4.00
706 749 0.181350 GATGAAGGGGTGCTACCTGG 59.819 60.000 5.48 0.00 38.63 4.45
707 750 1.281925 ATGAAGGGGTGCTACCTGGG 61.282 60.000 0.00 0.00 38.63 4.45
708 751 3.339093 AAGGGGTGCTACCTGGGC 61.339 66.667 0.00 0.00 38.63 5.36
711 754 4.426313 GGGTGCTACCTGGGCCAC 62.426 72.222 0.00 1.90 38.64 5.01
712 755 3.646715 GGTGCTACCTGGGCCACA 61.647 66.667 0.00 0.00 34.73 4.17
713 756 2.677228 GTGCTACCTGGGCCACAT 59.323 61.111 0.00 0.00 0.00 3.21
714 757 1.632018 GGTGCTACCTGGGCCACATA 61.632 60.000 0.00 0.00 34.73 2.29
715 758 0.463833 GTGCTACCTGGGCCACATAC 60.464 60.000 0.00 0.00 0.00 2.39
716 759 1.148498 GCTACCTGGGCCACATACC 59.852 63.158 0.00 0.00 0.00 2.73
722 765 3.087906 GGGCCACATACCCGGTCT 61.088 66.667 4.39 0.00 37.67 3.85
723 766 1.763256 GGGCCACATACCCGGTCTA 60.763 63.158 4.39 0.00 37.67 2.59
724 767 1.444672 GGCCACATACCCGGTCTAC 59.555 63.158 0.00 0.00 0.00 2.59
725 768 1.047034 GGCCACATACCCGGTCTACT 61.047 60.000 0.00 0.00 0.00 2.57
726 769 0.388294 GCCACATACCCGGTCTACTC 59.612 60.000 0.00 0.00 0.00 2.59
727 770 1.771565 CCACATACCCGGTCTACTCA 58.228 55.000 0.00 0.00 0.00 3.41
728 771 1.407979 CCACATACCCGGTCTACTCAC 59.592 57.143 0.00 0.00 0.00 3.51
729 772 1.407979 CACATACCCGGTCTACTCACC 59.592 57.143 0.00 0.00 0.00 4.02
730 773 1.287146 ACATACCCGGTCTACTCACCT 59.713 52.381 0.00 0.00 33.77 4.00
731 774 2.511218 ACATACCCGGTCTACTCACCTA 59.489 50.000 0.00 0.00 33.77 3.08
732 775 3.053395 ACATACCCGGTCTACTCACCTAA 60.053 47.826 0.00 0.00 33.77 2.69
733 776 2.140839 ACCCGGTCTACTCACCTAAG 57.859 55.000 0.00 0.00 33.77 2.18
734 777 0.745468 CCCGGTCTACTCACCTAAGC 59.255 60.000 0.00 0.00 33.77 3.09
735 778 0.745468 CCGGTCTACTCACCTAAGCC 59.255 60.000 0.00 0.00 33.77 4.35
736 779 1.685491 CCGGTCTACTCACCTAAGCCT 60.685 57.143 0.00 0.00 33.77 4.58
737 780 2.422519 CCGGTCTACTCACCTAAGCCTA 60.423 54.545 0.00 0.00 33.77 3.93
738 781 3.488363 CGGTCTACTCACCTAAGCCTAT 58.512 50.000 0.00 0.00 33.77 2.57
739 782 3.502979 CGGTCTACTCACCTAAGCCTATC 59.497 52.174 0.00 0.00 33.77 2.08
740 783 4.471548 GGTCTACTCACCTAAGCCTATCA 58.528 47.826 0.00 0.00 33.08 2.15
741 784 5.081032 GGTCTACTCACCTAAGCCTATCAT 58.919 45.833 0.00 0.00 33.08 2.45
742 785 5.184287 GGTCTACTCACCTAAGCCTATCATC 59.816 48.000 0.00 0.00 33.08 2.92
743 786 5.770663 GTCTACTCACCTAAGCCTATCATCA 59.229 44.000 0.00 0.00 0.00 3.07
744 787 6.265649 GTCTACTCACCTAAGCCTATCATCAA 59.734 42.308 0.00 0.00 0.00 2.57
745 788 5.957771 ACTCACCTAAGCCTATCATCAAA 57.042 39.130 0.00 0.00 0.00 2.69
746 789 6.313519 ACTCACCTAAGCCTATCATCAAAA 57.686 37.500 0.00 0.00 0.00 2.44
747 790 6.352516 ACTCACCTAAGCCTATCATCAAAAG 58.647 40.000 0.00 0.00 0.00 2.27
748 791 5.126067 TCACCTAAGCCTATCATCAAAAGC 58.874 41.667 0.00 0.00 0.00 3.51
749 792 4.276926 CACCTAAGCCTATCATCAAAAGCC 59.723 45.833 0.00 0.00 0.00 4.35
750 793 4.079787 ACCTAAGCCTATCATCAAAAGCCA 60.080 41.667 0.00 0.00 0.00 4.75
751 794 4.518211 CCTAAGCCTATCATCAAAAGCCAG 59.482 45.833 0.00 0.00 0.00 4.85
752 795 3.939740 AGCCTATCATCAAAAGCCAGA 57.060 42.857 0.00 0.00 0.00 3.86
753 796 4.240881 AGCCTATCATCAAAAGCCAGAA 57.759 40.909 0.00 0.00 0.00 3.02
754 797 4.205587 AGCCTATCATCAAAAGCCAGAAG 58.794 43.478 0.00 0.00 0.00 2.85
755 798 3.243334 GCCTATCATCAAAAGCCAGAAGC 60.243 47.826 0.00 0.00 44.25 3.86
756 799 3.317430 CCTATCATCAAAAGCCAGAAGCC 59.683 47.826 0.00 0.00 45.47 4.35
757 800 1.549203 TCATCAAAAGCCAGAAGCCC 58.451 50.000 0.00 0.00 45.47 5.19
758 801 0.533951 CATCAAAAGCCAGAAGCCCC 59.466 55.000 0.00 0.00 45.47 5.80
759 802 0.114954 ATCAAAAGCCAGAAGCCCCA 59.885 50.000 0.00 0.00 45.47 4.96
760 803 0.540365 TCAAAAGCCAGAAGCCCCAG 60.540 55.000 0.00 0.00 45.47 4.45
761 804 1.910276 AAAAGCCAGAAGCCCCAGC 60.910 57.895 0.00 0.00 45.47 4.85
762 805 3.893961 AAAGCCAGAAGCCCCAGCC 62.894 63.158 0.00 0.00 45.47 4.85
765 808 4.479993 CCAGAAGCCCCAGCCGAG 62.480 72.222 0.00 0.00 41.25 4.63
766 809 3.710722 CAGAAGCCCCAGCCGAGT 61.711 66.667 0.00 0.00 41.25 4.18
767 810 3.394836 AGAAGCCCCAGCCGAGTC 61.395 66.667 0.00 0.00 41.25 3.36
768 811 3.706373 GAAGCCCCAGCCGAGTCA 61.706 66.667 0.00 0.00 41.25 3.41
769 812 3.959991 GAAGCCCCAGCCGAGTCAC 62.960 68.421 0.00 0.00 41.25 3.67
771 814 4.101448 GCCCCAGCCGAGTCACAT 62.101 66.667 0.00 0.00 0.00 3.21
772 815 2.731571 GCCCCAGCCGAGTCACATA 61.732 63.158 0.00 0.00 0.00 2.29
773 816 1.144057 CCCCAGCCGAGTCACATAC 59.856 63.158 0.00 0.00 0.00 2.39
774 817 1.144057 CCCAGCCGAGTCACATACC 59.856 63.158 0.00 0.00 0.00 2.73
775 818 1.226974 CCAGCCGAGTCACATACCG 60.227 63.158 0.00 0.00 0.00 4.02
776 819 1.226974 CAGCCGAGTCACATACCGG 60.227 63.158 0.00 0.00 41.88 5.28
777 820 2.106332 GCCGAGTCACATACCGGG 59.894 66.667 6.32 0.00 40.33 5.73
778 821 2.718073 GCCGAGTCACATACCGGGT 61.718 63.158 6.32 4.46 40.33 5.28
779 822 1.436336 CCGAGTCACATACCGGGTC 59.564 63.158 6.32 0.00 37.91 4.46
780 823 1.035932 CCGAGTCACATACCGGGTCT 61.036 60.000 6.32 0.00 37.91 3.85
781 824 0.100682 CGAGTCACATACCGGGTCTG 59.899 60.000 6.32 7.03 0.00 3.51
782 825 0.460311 GAGTCACATACCGGGTCTGG 59.540 60.000 15.92 6.20 0.00 3.86
783 826 0.976073 AGTCACATACCGGGTCTGGG 60.976 60.000 15.92 12.43 0.00 4.45
784 827 1.687840 TCACATACCGGGTCTGGGG 60.688 63.158 14.10 7.39 0.00 4.96
785 828 3.087906 ACATACCGGGTCTGGGGC 61.088 66.667 15.92 0.00 0.00 5.80
786 829 3.087253 CATACCGGGTCTGGGGCA 61.087 66.667 6.32 0.00 0.00 5.36
787 830 2.039831 ATACCGGGTCTGGGGCAT 60.040 61.111 6.32 0.00 0.00 4.40
788 831 1.125093 CATACCGGGTCTGGGGCATA 61.125 60.000 6.32 0.00 0.00 3.14
789 832 0.400815 ATACCGGGTCTGGGGCATAA 60.401 55.000 6.32 0.00 0.00 1.90
790 833 0.620990 TACCGGGTCTGGGGCATAAA 60.621 55.000 6.32 0.00 0.00 1.40
791 834 1.453197 CCGGGTCTGGGGCATAAAC 60.453 63.158 0.00 0.00 0.00 2.01
792 835 1.607612 CGGGTCTGGGGCATAAACT 59.392 57.895 0.00 0.00 0.00 2.66
793 836 0.748005 CGGGTCTGGGGCATAAACTG 60.748 60.000 0.00 0.00 0.00 3.16
794 837 0.395724 GGGTCTGGGGCATAAACTGG 60.396 60.000 0.00 0.00 0.00 4.00
795 838 0.331616 GGTCTGGGGCATAAACTGGT 59.668 55.000 0.00 0.00 0.00 4.00
796 839 1.682087 GGTCTGGGGCATAAACTGGTC 60.682 57.143 0.00 0.00 0.00 4.02
797 840 1.282157 GTCTGGGGCATAAACTGGTCT 59.718 52.381 0.00 0.00 0.00 3.85
798 841 1.281867 TCTGGGGCATAAACTGGTCTG 59.718 52.381 0.00 0.00 0.00 3.51
799 842 1.281867 CTGGGGCATAAACTGGTCTGA 59.718 52.381 0.00 0.00 0.00 3.27
800 843 1.004277 TGGGGCATAAACTGGTCTGAC 59.996 52.381 0.00 0.00 0.00 3.51
801 844 1.369625 GGGCATAAACTGGTCTGACG 58.630 55.000 1.07 0.00 0.00 4.35
802 845 0.727398 GGCATAAACTGGTCTGACGC 59.273 55.000 1.07 0.00 0.00 5.19
803 846 1.438651 GCATAAACTGGTCTGACGCA 58.561 50.000 1.07 0.62 0.00 5.24
804 847 1.128692 GCATAAACTGGTCTGACGCAC 59.871 52.381 1.07 0.00 0.00 5.34
805 848 2.688507 CATAAACTGGTCTGACGCACT 58.311 47.619 1.07 0.00 0.00 4.40
806 849 2.433868 TAAACTGGTCTGACGCACTC 57.566 50.000 1.07 0.00 0.00 3.51
807 850 0.464036 AAACTGGTCTGACGCACTCA 59.536 50.000 1.07 0.00 0.00 3.41
808 851 0.249489 AACTGGTCTGACGCACTCAC 60.249 55.000 1.07 0.00 0.00 3.51
809 852 1.363807 CTGGTCTGACGCACTCACA 59.636 57.895 1.07 0.00 0.00 3.58
810 853 0.037882 CTGGTCTGACGCACTCACAT 60.038 55.000 1.07 0.00 0.00 3.21
811 854 0.319813 TGGTCTGACGCACTCACATG 60.320 55.000 1.07 0.00 0.00 3.21
812 855 0.038251 GGTCTGACGCACTCACATGA 60.038 55.000 0.00 0.00 0.00 3.07
834 877 9.219603 CATGAACTAGTTTCTATTCCTGTTTCA 57.780 33.333 10.02 0.00 34.97 2.69
853 900 8.462143 TGTTTCATAAGTTAGTAAGCTCTTCG 57.538 34.615 0.00 0.00 0.00 3.79
901 948 5.780282 TCTGTTTGTGGATAGAAGAGGAGAA 59.220 40.000 0.00 0.00 0.00 2.87
938 988 6.036577 AGTTTGTTTTGCTTCTGAAAAGGA 57.963 33.333 0.00 0.00 0.00 3.36
946 996 4.269183 TGCTTCTGAAAAGGAACAGTCAA 58.731 39.130 0.00 0.00 35.84 3.18
1040 1090 5.342361 AATTGTCCTGGGGTTAGGTAAAA 57.658 39.130 0.00 0.00 38.99 1.52
1041 1091 4.810584 TTGTCCTGGGGTTAGGTAAAAA 57.189 40.909 0.00 0.00 38.99 1.94
1208 1270 2.115595 GAGATCACGCTCGATGTTCAG 58.884 52.381 0.00 0.00 0.00 3.02
1450 1512 6.826741 GGGAAATGCATTGGTAACTACTTCTA 59.173 38.462 13.82 0.00 37.61 2.10
1458 1520 7.275999 GCATTGGTAACTACTTCTAGAACAGTC 59.724 40.741 13.03 4.82 37.61 3.51
1491 1582 8.759641 GTGAATGCAGACAAGTATATAGTTCAG 58.240 37.037 0.00 0.00 0.00 3.02
1719 1822 4.701651 TCTTCTGCTAAATGTTGTCATGGG 59.298 41.667 0.00 0.00 34.19 4.00
1735 1838 2.951229 TGGGTTCCTTCCTTCTGAAC 57.049 50.000 0.00 0.00 38.08 3.18
1791 2228 2.336667 GTTGACAAAAATGCCGATGGG 58.663 47.619 0.00 0.00 0.00 4.00
1829 2266 3.314693 AGGTCAAGGAGGTTAGTCACAA 58.685 45.455 0.00 0.00 0.00 3.33
1832 2269 4.308265 GTCAAGGAGGTTAGTCACAACTC 58.692 47.826 0.00 0.00 36.92 3.01
1834 2271 4.058817 CAAGGAGGTTAGTCACAACTCAC 58.941 47.826 0.00 0.00 36.92 3.51
1868 2313 9.698309 CAAACTGAAAAGATCTAGTCTTAGTGA 57.302 33.333 0.00 0.00 46.39 3.41
2009 2475 3.587061 TCATGGAAGAGCTTGACCCTAAA 59.413 43.478 0.00 0.00 0.00 1.85
2165 2689 8.411683 TCTTCCTAATTAACCACTCGATCTAAC 58.588 37.037 0.00 0.00 0.00 2.34
2170 2694 3.672767 AACCACTCGATCTAACCGTTT 57.327 42.857 0.00 0.00 0.00 3.60
2319 2843 1.671742 CCACTTCGCCACTACTGGT 59.328 57.895 0.00 0.00 40.17 4.00
2393 2917 4.087907 CTCTCTGGATCTCCATCTGCATA 58.912 47.826 0.00 0.00 46.46 3.14
2403 2927 1.605710 CCATCTGCATAGCCCTTTTCG 59.394 52.381 0.00 0.00 0.00 3.46
2426 2950 1.066430 TGGAAGTTCATCCAGTACCGC 60.066 52.381 5.01 0.00 44.52 5.68
2624 3148 9.582648 AACTTCCACAAGGTAATGTAAATAAGT 57.417 29.630 0.00 0.00 33.37 2.24
2646 6397 7.865706 AGTGGTATTTCTGCATTAAGTAAGG 57.134 36.000 0.00 0.00 0.00 2.69
2648 6399 8.275040 AGTGGTATTTCTGCATTAAGTAAGGAT 58.725 33.333 0.00 0.00 0.00 3.24
2713 6636 4.744795 AGCACTTAACATAGCTAGCACT 57.255 40.909 18.83 0.00 35.19 4.40
2714 6637 5.091261 AGCACTTAACATAGCTAGCACTT 57.909 39.130 18.83 4.56 35.19 3.16
2715 6638 4.872691 AGCACTTAACATAGCTAGCACTTG 59.127 41.667 18.83 13.20 35.19 3.16
2717 6640 5.810587 GCACTTAACATAGCTAGCACTTGTA 59.189 40.000 18.83 0.00 0.00 2.41
2721 6644 8.041323 ACTTAACATAGCTAGCACTTGTATGTT 58.959 33.333 28.08 28.08 43.41 2.71
2722 6645 9.529325 CTTAACATAGCTAGCACTTGTATGTTA 57.471 33.333 26.69 26.69 41.94 2.41
2723 6646 7.772332 AACATAGCTAGCACTTGTATGTTAC 57.228 36.000 25.88 0.00 40.72 2.50
2781 6717 0.602562 TAGTTTTGCATGCAGGTGCC 59.397 50.000 21.50 8.47 44.43 5.01
3027 6963 3.760684 AGATGACTGGTTTCAATGCCTTC 59.239 43.478 0.00 0.00 0.00 3.46
3075 7011 2.165437 TGTGTATGCACTGCTCATCGTA 59.835 45.455 15.25 0.00 45.44 3.43
3142 7078 6.073314 ACGGTAAAAGTCTATCTATGCCCTA 58.927 40.000 0.00 0.00 0.00 3.53
3149 7085 9.454859 AAAAGTCTATCTATGCCCTAATAATGC 57.545 33.333 0.00 0.00 0.00 3.56
3150 7086 7.130681 AGTCTATCTATGCCCTAATAATGCC 57.869 40.000 0.00 0.00 0.00 4.40
3157 7102 7.568349 TCTATGCCCTAATAATGCCAATAGAG 58.432 38.462 0.00 0.00 0.00 2.43
3234 7191 6.268825 TGTATATCGCTTATCCTGTCTTCC 57.731 41.667 0.00 0.00 0.00 3.46
3310 7267 1.548719 TCAGAAGGTACCACCATGACG 59.451 52.381 15.94 0.00 41.95 4.35
3314 7271 3.263425 AGAAGGTACCACCATGACGAAAT 59.737 43.478 15.94 0.00 41.95 2.17
3511 7475 9.520515 TGAATTCACTCTTTCTTAGCCTTTAAT 57.479 29.630 3.38 0.00 0.00 1.40
3592 7560 3.237268 AGCCACCTGGTTTCAAATACA 57.763 42.857 0.00 0.00 37.57 2.29
3858 7828 4.081420 TGTCTTCTCTGAGGTAAATCAGCC 60.081 45.833 4.59 0.00 45.25 4.85
3868 7838 3.832490 AGGTAAATCAGCCTTTTTGGGTC 59.168 43.478 0.00 0.00 46.24 4.46
3927 7897 3.181464 TGTGTAACCGGAGAAACATGTCA 60.181 43.478 9.46 0.00 34.36 3.58
3932 7902 2.105821 ACCGGAGAAACATGTCAAAGGA 59.894 45.455 9.46 0.00 0.00 3.36
3933 7903 3.244911 ACCGGAGAAACATGTCAAAGGAT 60.245 43.478 9.46 0.00 0.00 3.24
3935 7905 3.753272 CGGAGAAACATGTCAAAGGATGT 59.247 43.478 0.00 0.00 34.16 3.06
3936 7906 4.216257 CGGAGAAACATGTCAAAGGATGTT 59.784 41.667 0.00 0.00 35.71 2.71
3937 7907 5.278463 CGGAGAAACATGTCAAAGGATGTTT 60.278 40.000 9.29 9.29 35.71 2.83
3938 7908 6.515832 GGAGAAACATGTCAAAGGATGTTTT 58.484 36.000 0.00 3.10 35.71 2.43
3939 7909 6.421801 GGAGAAACATGTCAAAGGATGTTTTG 59.578 38.462 0.00 0.00 38.97 2.44
3940 7910 6.282930 AGAAACATGTCAAAGGATGTTTTGG 58.717 36.000 0.00 0.00 38.33 3.28
3941 7911 5.867903 AACATGTCAAAGGATGTTTTGGA 57.132 34.783 0.00 0.00 38.33 3.53
3942 7912 5.458041 ACATGTCAAAGGATGTTTTGGAG 57.542 39.130 0.00 0.00 38.33 3.86
3943 7913 5.139727 ACATGTCAAAGGATGTTTTGGAGA 58.860 37.500 0.00 0.00 38.33 3.71
3944 7914 5.598005 ACATGTCAAAGGATGTTTTGGAGAA 59.402 36.000 0.00 0.00 38.33 2.87
3945 7915 5.514274 TGTCAAAGGATGTTTTGGAGAAC 57.486 39.130 0.00 0.00 38.33 3.01
3946 7916 4.036262 TGTCAAAGGATGTTTTGGAGAACG 59.964 41.667 0.00 0.00 38.33 3.95
3947 7917 4.274950 GTCAAAGGATGTTTTGGAGAACGA 59.725 41.667 0.00 0.00 38.33 3.85
3948 7918 4.884744 TCAAAGGATGTTTTGGAGAACGAA 59.115 37.500 0.00 0.00 38.33 3.85
3949 7919 5.534654 TCAAAGGATGTTTTGGAGAACGAAT 59.465 36.000 0.00 0.00 38.33 3.34
3950 7920 6.712998 TCAAAGGATGTTTTGGAGAACGAATA 59.287 34.615 0.00 0.00 38.33 1.75
3951 7921 6.743575 AAGGATGTTTTGGAGAACGAATAG 57.256 37.500 0.00 0.00 32.18 1.73
3952 7922 6.049955 AGGATGTTTTGGAGAACGAATAGA 57.950 37.500 0.00 0.00 32.18 1.98
3953 7923 6.109359 AGGATGTTTTGGAGAACGAATAGAG 58.891 40.000 0.00 0.00 32.18 2.43
3954 7924 6.070767 AGGATGTTTTGGAGAACGAATAGAGA 60.071 38.462 0.00 0.00 32.18 3.10
3955 7925 6.763610 GGATGTTTTGGAGAACGAATAGAGAT 59.236 38.462 0.00 0.00 32.18 2.75
3956 7926 7.926555 GGATGTTTTGGAGAACGAATAGAGATA 59.073 37.037 0.00 0.00 32.18 1.98
3957 7927 9.482627 GATGTTTTGGAGAACGAATAGAGATAT 57.517 33.333 0.00 0.00 32.18 1.63
3958 7928 8.648557 TGTTTTGGAGAACGAATAGAGATATG 57.351 34.615 0.00 0.00 32.18 1.78
3959 7929 7.224753 TGTTTTGGAGAACGAATAGAGATATGC 59.775 37.037 0.00 0.00 32.18 3.14
3960 7930 5.392767 TGGAGAACGAATAGAGATATGCC 57.607 43.478 0.00 0.00 0.00 4.40
3961 7931 4.832823 TGGAGAACGAATAGAGATATGCCA 59.167 41.667 0.00 0.00 0.00 4.92
3962 7932 5.304357 TGGAGAACGAATAGAGATATGCCAA 59.696 40.000 0.00 0.00 0.00 4.52
3963 7933 6.014242 TGGAGAACGAATAGAGATATGCCAAT 60.014 38.462 0.00 0.00 0.00 3.16
3969 7939 8.311650 ACGAATAGAGATATGCCAATAACAAC 57.688 34.615 0.00 0.00 0.00 3.32
3978 7948 2.289274 TGCCAATAACAACGTGTGACAG 59.711 45.455 0.00 0.00 0.00 3.51
3985 7955 4.806342 AACAACGTGTGACAGAATTACC 57.194 40.909 0.00 0.00 0.00 2.85
4001 7971 3.424724 TTACCTATAGGGGGTGCTTCA 57.575 47.619 22.91 0.00 40.27 3.02
4003 7973 2.568979 ACCTATAGGGGGTGCTTCAAA 58.431 47.619 22.91 0.00 40.27 2.69
4004 7974 3.131252 ACCTATAGGGGGTGCTTCAAAT 58.869 45.455 22.91 0.00 40.27 2.32
4005 7975 4.312487 ACCTATAGGGGGTGCTTCAAATA 58.688 43.478 22.91 0.00 40.27 1.40
4009 7979 2.807676 AGGGGGTGCTTCAAATACTTG 58.192 47.619 0.00 0.00 0.00 3.16
4011 7981 2.897326 GGGGGTGCTTCAAATACTTGTT 59.103 45.455 0.00 0.00 33.94 2.83
4012 7982 3.306019 GGGGGTGCTTCAAATACTTGTTG 60.306 47.826 0.00 0.00 33.94 3.33
4013 7983 3.320826 GGGGTGCTTCAAATACTTGTTGT 59.679 43.478 0.00 0.00 33.94 3.32
4015 7985 4.546570 GGTGCTTCAAATACTTGTTGTCC 58.453 43.478 0.00 0.00 33.94 4.02
4016 7986 4.546570 GTGCTTCAAATACTTGTTGTCCC 58.453 43.478 0.00 0.00 33.94 4.46
4024 8271 7.881142 TCAAATACTTGTTGTCCCAAATGTAG 58.119 34.615 0.00 0.00 33.94 2.74
4026 8273 2.552315 ACTTGTTGTCCCAAATGTAGCG 59.448 45.455 0.00 0.00 0.00 4.26
4042 8289 9.289303 CAAATGTAGCGTAATCTTGCTTAAAAT 57.711 29.630 0.00 0.00 42.48 1.82
4101 8348 8.177013 GGTTTTGATTTTTCATATCAATGCCAC 58.823 33.333 0.00 0.00 40.57 5.01
4166 8420 2.284625 TGTCGGCCTCCCACTGAT 60.285 61.111 0.00 0.00 0.00 2.90
4304 8558 6.405278 TTTCAAACTCCTTTTTCTGATCCC 57.595 37.500 0.00 0.00 0.00 3.85
4307 8564 5.536161 TCAAACTCCTTTTTCTGATCCCAAG 59.464 40.000 0.00 0.00 0.00 3.61
4418 8676 0.462581 TGCTCATCGGACTTGGCATC 60.463 55.000 0.00 0.00 0.00 3.91
4516 8777 2.592308 GGAGGGCAGTAGCAAGGG 59.408 66.667 0.00 0.00 44.61 3.95
4568 8829 2.696526 ACTCCTACTGGGTCACAAGA 57.303 50.000 0.00 0.00 36.25 3.02
4574 8835 2.103153 ACTGGGTCACAAGAGAGGAA 57.897 50.000 0.00 0.00 0.00 3.36
4616 8877 1.745489 GGTGATGAACGAGGTGGCC 60.745 63.158 0.00 0.00 0.00 5.36
4634 8895 0.179000 CCGAGAAGGACAAGGATGGG 59.821 60.000 0.00 0.00 45.00 4.00
4736 8997 0.251742 TCAACCATGCCAAGAAGGGG 60.252 55.000 0.00 0.00 38.09 4.79
4754 9015 1.202770 GGGGTTGATATTCTGTCCGGG 60.203 57.143 0.00 0.00 0.00 5.73
4838 9099 0.534203 ACCATGAGAACCAACGCGTT 60.534 50.000 20.79 20.79 0.00 4.84
4855 9119 1.337821 GTTGGTACGTCTTCTCGCTG 58.662 55.000 0.00 0.00 0.00 5.18
4856 9120 0.388134 TTGGTACGTCTTCTCGCTGC 60.388 55.000 0.00 0.00 0.00 5.25
4857 9121 1.241990 TGGTACGTCTTCTCGCTGCT 61.242 55.000 0.00 0.00 0.00 4.24
4904 9168 6.164176 ACTACAAATGTTGGTGACTAGCTAC 58.836 40.000 0.00 0.00 34.12 3.58
4923 9187 1.749063 ACCATCGATCGTCTGCTAACA 59.251 47.619 15.94 0.00 0.00 2.41
4933 9197 5.648178 TCGTCTGCTAACACACCTTAATA 57.352 39.130 0.00 0.00 0.00 0.98
5059 9323 9.354673 TGACTTTCACAAGGAGAATTTCTAATT 57.645 29.630 0.00 0.00 33.82 1.40
5095 9359 3.191078 AGCTGATGTAAGAGCATGTCC 57.809 47.619 0.00 0.00 37.70 4.02
5128 9392 4.689071 TGCACCATAATAAGGTACAGACG 58.311 43.478 0.00 0.00 37.23 4.18
5129 9393 3.493503 GCACCATAATAAGGTACAGACGC 59.506 47.826 0.00 0.00 37.23 5.19
5130 9394 4.739735 GCACCATAATAAGGTACAGACGCT 60.740 45.833 0.00 0.00 37.23 5.07
5131 9395 5.357257 CACCATAATAAGGTACAGACGCTT 58.643 41.667 0.00 0.00 37.23 4.68
5132 9396 5.815740 CACCATAATAAGGTACAGACGCTTT 59.184 40.000 0.00 0.00 37.23 3.51
5133 9397 6.982141 CACCATAATAAGGTACAGACGCTTTA 59.018 38.462 0.00 0.00 37.23 1.85
5134 9398 7.656137 CACCATAATAAGGTACAGACGCTTTAT 59.344 37.037 0.00 0.00 37.23 1.40
5135 9399 7.871463 ACCATAATAAGGTACAGACGCTTTATC 59.129 37.037 0.00 0.00 37.67 1.75
5136 9400 7.870954 CCATAATAAGGTACAGACGCTTTATCA 59.129 37.037 0.00 0.00 0.00 2.15
5137 9401 8.700644 CATAATAAGGTACAGACGCTTTATCAC 58.299 37.037 0.00 0.00 0.00 3.06
5138 9402 3.146618 AGGTACAGACGCTTTATCACG 57.853 47.619 0.00 0.00 0.00 4.35
5139 9403 2.751259 AGGTACAGACGCTTTATCACGA 59.249 45.455 0.00 0.00 0.00 4.35
5140 9404 3.106672 GGTACAGACGCTTTATCACGAG 58.893 50.000 0.00 0.00 0.00 4.18
5141 9405 3.181503 GGTACAGACGCTTTATCACGAGA 60.182 47.826 0.00 0.00 0.00 4.04
5145 9409 4.327357 ACAGACGCTTTATCACGAGAAATG 59.673 41.667 0.00 0.00 0.00 2.32
5232 9629 1.594518 CGCGAAACTGGTGACACTTTG 60.595 52.381 0.00 0.00 35.60 2.77
5274 9671 6.936900 GGCTCTAGCTCCAAAAATATCACATA 59.063 38.462 1.39 0.00 41.70 2.29
5326 9723 6.149973 TCACATCTAAAAATCACCTTGAGCTG 59.850 38.462 0.00 0.00 0.00 4.24
5350 9747 2.301505 GTCGATCGGACAAGCATGG 58.698 57.895 16.41 0.00 45.36 3.66
5369 9766 3.067684 GGGATTCCCAGAAGAACGAAA 57.932 47.619 17.36 0.00 44.65 3.46
5399 9796 5.479724 TCCATTTGGATTAGTGACAATGCAA 59.520 36.000 9.32 9.32 42.31 4.08
5414 9811 0.897863 TGCAAATGCCACCTGTACCC 60.898 55.000 2.46 0.00 41.18 3.69
5417 9814 2.882229 GCAAATGCCACCTGTACCCTAA 60.882 50.000 0.00 0.00 34.31 2.69
5459 9856 6.815089 TCACAAGTGGTTTGCTAATCAAAAT 58.185 32.000 0.00 0.00 45.35 1.82
5460 9857 7.946207 TCACAAGTGGTTTGCTAATCAAAATA 58.054 30.769 0.00 0.00 45.35 1.40
5461 9858 7.865385 TCACAAGTGGTTTGCTAATCAAAATAC 59.135 33.333 0.00 0.00 45.35 1.89
5462 9859 6.861055 ACAAGTGGTTTGCTAATCAAAATACG 59.139 34.615 0.00 0.00 45.35 3.06
5467 9864 7.804129 GTGGTTTGCTAATCAAAATACGTAACA 59.196 33.333 0.00 0.00 45.35 2.41
5525 9922 7.596749 AAGTACATTTGGATTAGTGACTTCG 57.403 36.000 0.00 0.00 0.00 3.79
5546 9962 3.065371 CGCCCACAATAAGTTCATTCTCC 59.935 47.826 0.00 0.00 0.00 3.71
5547 9963 4.016444 GCCCACAATAAGTTCATTCTCCA 58.984 43.478 0.00 0.00 0.00 3.86
5548 9964 4.646492 GCCCACAATAAGTTCATTCTCCAT 59.354 41.667 0.00 0.00 0.00 3.41
5549 9965 5.450965 GCCCACAATAAGTTCATTCTCCATG 60.451 44.000 0.00 0.00 0.00 3.66
5550 9966 5.887598 CCCACAATAAGTTCATTCTCCATGA 59.112 40.000 0.00 0.00 40.43 3.07
5551 9967 6.183360 CCCACAATAAGTTCATTCTCCATGAC 60.183 42.308 0.00 0.00 41.98 3.06
5552 9968 6.375174 CCACAATAAGTTCATTCTCCATGACA 59.625 38.462 0.00 0.00 41.98 3.58
5553 9969 7.414873 CCACAATAAGTTCATTCTCCATGACAG 60.415 40.741 0.00 0.00 41.98 3.51
5554 9970 6.094603 ACAATAAGTTCATTCTCCATGACAGC 59.905 38.462 0.00 0.00 41.98 4.40
5555 9971 3.996921 AGTTCATTCTCCATGACAGCT 57.003 42.857 0.00 0.00 41.98 4.24
5556 9972 3.607741 AGTTCATTCTCCATGACAGCTG 58.392 45.455 13.48 13.48 41.98 4.24
5557 9973 3.008813 AGTTCATTCTCCATGACAGCTGT 59.991 43.478 21.88 21.88 41.98 4.40
5558 9974 4.223700 AGTTCATTCTCCATGACAGCTGTA 59.776 41.667 21.73 8.91 41.98 2.74
5559 9975 5.104610 AGTTCATTCTCCATGACAGCTGTAT 60.105 40.000 21.73 10.91 41.98 2.29
5560 9976 5.363562 TCATTCTCCATGACAGCTGTATT 57.636 39.130 21.73 7.33 36.94 1.89
5561 9977 5.748402 TCATTCTCCATGACAGCTGTATTT 58.252 37.500 21.73 4.44 36.94 1.40
5562 9978 5.819379 TCATTCTCCATGACAGCTGTATTTC 59.181 40.000 21.73 7.93 36.94 2.17
5563 9979 5.426689 TTCTCCATGACAGCTGTATTTCT 57.573 39.130 21.73 0.00 0.00 2.52
5564 9980 5.426689 TCTCCATGACAGCTGTATTTCTT 57.573 39.130 21.73 2.41 0.00 2.52
5565 9981 5.423015 TCTCCATGACAGCTGTATTTCTTC 58.577 41.667 21.73 5.88 0.00 2.87
5595 10011 7.122055 GGGAATTACATAACCACAAGAATGTCA 59.878 37.037 0.00 0.00 37.82 3.58
5601 10017 8.498054 ACATAACCACAAGAATGTCATAAGAG 57.502 34.615 0.00 0.00 37.82 2.85
5764 10183 4.552166 AACTTGTTGGTGATGTTTCTCG 57.448 40.909 0.00 0.00 0.00 4.04
5771 10190 4.071961 TGGTGATGTTTCTCGGGATATG 57.928 45.455 0.00 0.00 0.00 1.78
5905 10324 1.725169 CCCACCCCCAAAGGTCTTCA 61.725 60.000 0.00 0.00 38.39 3.02
5990 10409 3.447944 GGAACCGTCTCTACTCTCCAATT 59.552 47.826 0.00 0.00 0.00 2.32
5991 10410 4.425520 GAACCGTCTCTACTCTCCAATTG 58.574 47.826 0.00 0.00 0.00 2.32
5992 10411 2.166664 ACCGTCTCTACTCTCCAATTGC 59.833 50.000 0.00 0.00 0.00 3.56
5993 10412 2.428890 CCGTCTCTACTCTCCAATTGCT 59.571 50.000 0.00 0.00 0.00 3.91
5994 10413 3.490078 CCGTCTCTACTCTCCAATTGCTC 60.490 52.174 0.00 0.00 0.00 4.26
5995 10414 3.490078 CGTCTCTACTCTCCAATTGCTCC 60.490 52.174 0.00 0.00 0.00 4.70
6004 10423 0.179062 CCAATTGCTCCTCCTCCTCG 60.179 60.000 0.00 0.00 0.00 4.63
6043 10603 1.697284 CATCCTCGTCCTCATCCTCA 58.303 55.000 0.00 0.00 0.00 3.86
6139 10732 3.312828 CTTCTCTTCACCTTGTGTCTCG 58.687 50.000 0.00 0.00 34.79 4.04
6147 10740 2.669924 CACCTTGTGTCTCGTCATCATG 59.330 50.000 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.686683 AGAGCAAAGAGAAGCCTTAATAATAAA 57.313 29.630 0.00 0.00 0.00 1.40
27 28 9.686683 AAGAGCAAAGAGAAGCCTTAATAATAA 57.313 29.630 0.00 0.00 0.00 1.40
28 29 9.686683 AAAGAGCAAAGAGAAGCCTTAATAATA 57.313 29.630 0.00 0.00 0.00 0.98
29 30 8.465201 CAAAGAGCAAAGAGAAGCCTTAATAAT 58.535 33.333 0.00 0.00 0.00 1.28
62 63 1.396301 GCATTTCTCAGCAGACGAAGG 59.604 52.381 0.00 0.00 0.00 3.46
67 68 1.005340 CGGAGCATTTCTCAGCAGAC 58.995 55.000 0.00 0.00 43.70 3.51
78 79 2.306512 TGTACCTTAAACCCGGAGCATT 59.693 45.455 0.73 0.00 0.00 3.56
463 480 1.047034 AGTAATTCCGGACGGAGGGG 61.047 60.000 13.64 0.00 46.06 4.79
469 486 2.373540 TGGACAAGTAATTCCGGACG 57.626 50.000 1.83 0.00 34.24 4.79
487 504 1.755179 ACTTGCCGGAGAAATGGATG 58.245 50.000 5.05 0.00 0.00 3.51
488 505 2.505819 ACTACTTGCCGGAGAAATGGAT 59.494 45.455 5.05 0.00 0.00 3.41
499 542 0.739813 CCTTCCGGAACTACTTGCCG 60.740 60.000 14.35 0.00 44.42 5.69
501 544 1.405661 CCTCCTTCCGGAACTACTTGC 60.406 57.143 14.35 0.00 39.29 4.01
508 551 0.822811 GTACTCCCTCCTTCCGGAAC 59.177 60.000 14.35 0.00 39.29 3.62
537 580 5.330233 GGGGTCATCCTCCTTTTCTAAAAA 58.670 41.667 0.00 0.00 35.33 1.94
538 581 4.930696 GGGGTCATCCTCCTTTTCTAAAA 58.069 43.478 0.00 0.00 35.33 1.52
539 582 4.586306 GGGGTCATCCTCCTTTTCTAAA 57.414 45.455 0.00 0.00 35.33 1.85
552 595 3.866582 CAGAGGCCGGGGGTCATC 61.867 72.222 2.18 0.00 0.00 2.92
558 601 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
559 602 4.559063 CCAGATGCAGAGGCCGGG 62.559 72.222 2.18 0.00 40.13 5.73
560 603 4.559063 CCCAGATGCAGAGGCCGG 62.559 72.222 0.00 0.00 40.13 6.13
561 604 3.457625 CTCCCAGATGCAGAGGCCG 62.458 68.421 0.00 0.00 40.13 6.13
562 605 1.417288 ATCTCCCAGATGCAGAGGCC 61.417 60.000 0.00 0.00 40.13 5.19
563 606 0.250381 CATCTCCCAGATGCAGAGGC 60.250 60.000 0.61 0.00 44.69 4.70
571 614 2.180276 GGCCGTATACATCTCCCAGAT 58.820 52.381 3.32 0.00 34.74 2.90
572 615 1.133294 TGGCCGTATACATCTCCCAGA 60.133 52.381 3.32 0.00 0.00 3.86
573 616 1.000955 GTGGCCGTATACATCTCCCAG 59.999 57.143 3.32 0.00 0.00 4.45
574 617 1.045407 GTGGCCGTATACATCTCCCA 58.955 55.000 3.32 0.00 0.00 4.37
575 618 1.339097 AGTGGCCGTATACATCTCCC 58.661 55.000 3.32 0.00 0.00 4.30
576 619 3.470645 AAAGTGGCCGTATACATCTCC 57.529 47.619 3.32 0.00 0.00 3.71
577 620 6.220930 TCAATAAAGTGGCCGTATACATCTC 58.779 40.000 3.32 0.00 0.00 2.75
578 621 6.169557 TCAATAAAGTGGCCGTATACATCT 57.830 37.500 3.32 0.00 0.00 2.90
579 622 7.435068 AATCAATAAAGTGGCCGTATACATC 57.565 36.000 3.32 0.00 0.00 3.06
580 623 9.515226 AATAATCAATAAAGTGGCCGTATACAT 57.485 29.630 3.32 0.00 0.00 2.29
581 624 8.911918 AATAATCAATAAAGTGGCCGTATACA 57.088 30.769 3.32 0.00 0.00 2.29
582 625 9.216117 AGAATAATCAATAAAGTGGCCGTATAC 57.784 33.333 0.00 0.00 0.00 1.47
583 626 9.431887 GAGAATAATCAATAAAGTGGCCGTATA 57.568 33.333 0.00 0.00 0.00 1.47
584 627 7.117812 CGAGAATAATCAATAAAGTGGCCGTAT 59.882 37.037 0.00 0.00 0.00 3.06
585 628 6.422701 CGAGAATAATCAATAAAGTGGCCGTA 59.577 38.462 0.00 0.00 0.00 4.02
586 629 5.236478 CGAGAATAATCAATAAAGTGGCCGT 59.764 40.000 0.00 0.00 0.00 5.68
587 630 5.465390 TCGAGAATAATCAATAAAGTGGCCG 59.535 40.000 0.00 0.00 0.00 6.13
588 631 6.073003 CCTCGAGAATAATCAATAAAGTGGCC 60.073 42.308 15.71 0.00 0.00 5.36
589 632 6.706270 TCCTCGAGAATAATCAATAAAGTGGC 59.294 38.462 15.71 0.00 0.00 5.01
590 633 7.171678 GGTCCTCGAGAATAATCAATAAAGTGG 59.828 40.741 15.71 0.00 0.00 4.00
591 634 7.928706 AGGTCCTCGAGAATAATCAATAAAGTG 59.071 37.037 15.71 0.00 0.00 3.16
592 635 8.024145 AGGTCCTCGAGAATAATCAATAAAGT 57.976 34.615 15.71 0.00 0.00 2.66
593 636 8.894768 AAGGTCCTCGAGAATAATCAATAAAG 57.105 34.615 15.71 0.00 0.00 1.85
594 637 9.760077 GTAAGGTCCTCGAGAATAATCAATAAA 57.240 33.333 15.71 0.00 0.00 1.40
595 638 8.920174 TGTAAGGTCCTCGAGAATAATCAATAA 58.080 33.333 15.71 0.00 0.00 1.40
596 639 8.473358 TGTAAGGTCCTCGAGAATAATCAATA 57.527 34.615 15.71 0.00 0.00 1.90
597 640 7.361457 TGTAAGGTCCTCGAGAATAATCAAT 57.639 36.000 15.71 0.00 0.00 2.57
598 641 6.785337 TGTAAGGTCCTCGAGAATAATCAA 57.215 37.500 15.71 0.00 0.00 2.57
599 642 6.785337 TTGTAAGGTCCTCGAGAATAATCA 57.215 37.500 15.71 2.16 0.00 2.57
600 643 7.266400 ACTTTGTAAGGTCCTCGAGAATAATC 58.734 38.462 15.71 0.00 0.00 1.75
601 644 7.184067 ACTTTGTAAGGTCCTCGAGAATAAT 57.816 36.000 15.71 0.00 0.00 1.28
602 645 6.600882 ACTTTGTAAGGTCCTCGAGAATAA 57.399 37.500 15.71 0.00 0.00 1.40
603 646 7.893124 ATACTTTGTAAGGTCCTCGAGAATA 57.107 36.000 15.71 0.00 0.00 1.75
604 647 6.793505 ATACTTTGTAAGGTCCTCGAGAAT 57.206 37.500 15.71 0.00 0.00 2.40
605 648 6.600882 AATACTTTGTAAGGTCCTCGAGAA 57.399 37.500 15.71 0.00 0.00 2.87
606 649 6.660521 TGTAATACTTTGTAAGGTCCTCGAGA 59.339 38.462 15.71 0.00 0.00 4.04
607 650 6.860080 TGTAATACTTTGTAAGGTCCTCGAG 58.140 40.000 5.13 5.13 0.00 4.04
608 651 6.839124 TGTAATACTTTGTAAGGTCCTCGA 57.161 37.500 0.00 0.00 0.00 4.04
609 652 6.869913 TGTTGTAATACTTTGTAAGGTCCTCG 59.130 38.462 0.00 0.00 0.00 4.63
610 653 8.611654 TTGTTGTAATACTTTGTAAGGTCCTC 57.388 34.615 0.00 0.00 0.00 3.71
615 658 9.730420 GGCATATTGTTGTAATACTTTGTAAGG 57.270 33.333 0.00 0.00 0.00 2.69
618 661 9.674068 TCAGGCATATTGTTGTAATACTTTGTA 57.326 29.630 0.00 0.00 0.00 2.41
619 662 8.574251 TCAGGCATATTGTTGTAATACTTTGT 57.426 30.769 0.00 0.00 0.00 2.83
622 665 8.850156 GGATTCAGGCATATTGTTGTAATACTT 58.150 33.333 0.00 0.00 0.00 2.24
623 666 7.173218 CGGATTCAGGCATATTGTTGTAATACT 59.827 37.037 0.00 0.00 0.00 2.12
624 667 7.298122 CGGATTCAGGCATATTGTTGTAATAC 58.702 38.462 0.00 0.00 0.00 1.89
625 668 6.072728 GCGGATTCAGGCATATTGTTGTAATA 60.073 38.462 0.00 0.00 0.00 0.98
626 669 5.278463 GCGGATTCAGGCATATTGTTGTAAT 60.278 40.000 0.00 0.00 0.00 1.89
627 670 4.036262 GCGGATTCAGGCATATTGTTGTAA 59.964 41.667 0.00 0.00 0.00 2.41
628 671 3.563808 GCGGATTCAGGCATATTGTTGTA 59.436 43.478 0.00 0.00 0.00 2.41
629 672 2.358898 GCGGATTCAGGCATATTGTTGT 59.641 45.455 0.00 0.00 0.00 3.32
630 673 2.287788 GGCGGATTCAGGCATATTGTTG 60.288 50.000 5.51 0.00 0.00 3.33
631 674 1.956477 GGCGGATTCAGGCATATTGTT 59.044 47.619 5.51 0.00 0.00 2.83
632 675 1.133823 TGGCGGATTCAGGCATATTGT 60.134 47.619 8.92 0.00 39.30 2.71
633 676 1.608055 TGGCGGATTCAGGCATATTG 58.392 50.000 8.92 0.00 39.30 1.90
639 682 1.450531 CCAAGATGGCGGATTCAGGC 61.451 60.000 3.39 3.39 0.00 4.85
640 683 2.711711 CCAAGATGGCGGATTCAGG 58.288 57.895 0.00 0.00 0.00 3.86
659 702 5.012046 TGGATAGGAGTAGTGGCATATGTTG 59.988 44.000 4.29 0.00 0.00 3.33
660 703 5.155161 TGGATAGGAGTAGTGGCATATGTT 58.845 41.667 4.29 0.00 0.00 2.71
661 704 4.752063 TGGATAGGAGTAGTGGCATATGT 58.248 43.478 4.29 0.00 0.00 2.29
662 705 5.946942 ATGGATAGGAGTAGTGGCATATG 57.053 43.478 0.00 0.00 0.00 1.78
663 706 7.365426 TCATATGGATAGGAGTAGTGGCATAT 58.635 38.462 2.13 0.00 0.00 1.78
664 707 6.741724 TCATATGGATAGGAGTAGTGGCATA 58.258 40.000 2.13 0.00 0.00 3.14
665 708 5.593786 TCATATGGATAGGAGTAGTGGCAT 58.406 41.667 2.13 0.00 0.00 4.40
666 709 5.010708 TCATATGGATAGGAGTAGTGGCA 57.989 43.478 2.13 0.00 0.00 4.92
667 710 5.658634 TCATCATATGGATAGGAGTAGTGGC 59.341 44.000 2.13 0.00 33.95 5.01
668 711 7.147759 CCTTCATCATATGGATAGGAGTAGTGG 60.148 44.444 2.13 0.00 33.95 4.00
669 712 7.147759 CCCTTCATCATATGGATAGGAGTAGTG 60.148 44.444 2.13 0.00 33.95 2.74
670 713 6.900186 CCCTTCATCATATGGATAGGAGTAGT 59.100 42.308 2.13 0.00 33.95 2.73
671 714 6.326064 CCCCTTCATCATATGGATAGGAGTAG 59.674 46.154 2.13 0.00 33.95 2.57
672 715 6.205298 CCCCTTCATCATATGGATAGGAGTA 58.795 44.000 2.13 0.00 33.95 2.59
673 716 5.035556 CCCCTTCATCATATGGATAGGAGT 58.964 45.833 2.13 0.00 33.95 3.85
674 717 5.035556 ACCCCTTCATCATATGGATAGGAG 58.964 45.833 2.13 0.00 33.95 3.69
675 718 4.784838 CACCCCTTCATCATATGGATAGGA 59.215 45.833 2.13 0.00 33.95 2.94
676 719 4.627255 GCACCCCTTCATCATATGGATAGG 60.627 50.000 2.13 5.20 33.95 2.57
677 720 4.226846 AGCACCCCTTCATCATATGGATAG 59.773 45.833 2.13 0.00 33.95 2.08
678 721 4.178339 AGCACCCCTTCATCATATGGATA 58.822 43.478 2.13 0.00 33.95 2.59
679 722 2.991713 AGCACCCCTTCATCATATGGAT 59.008 45.455 2.13 0.00 36.39 3.41
680 723 2.421725 AGCACCCCTTCATCATATGGA 58.578 47.619 2.13 0.00 0.00 3.41
681 724 2.965671 AGCACCCCTTCATCATATGG 57.034 50.000 2.13 0.00 0.00 2.74
682 725 3.328931 AGGTAGCACCCCTTCATCATATG 59.671 47.826 0.00 0.00 39.75 1.78
683 726 3.328931 CAGGTAGCACCCCTTCATCATAT 59.671 47.826 0.00 0.00 39.75 1.78
684 727 2.705658 CAGGTAGCACCCCTTCATCATA 59.294 50.000 0.00 0.00 39.75 2.15
685 728 1.492176 CAGGTAGCACCCCTTCATCAT 59.508 52.381 0.00 0.00 39.75 2.45
686 729 0.911769 CAGGTAGCACCCCTTCATCA 59.088 55.000 0.00 0.00 39.75 3.07
687 730 0.181350 CCAGGTAGCACCCCTTCATC 59.819 60.000 0.00 0.00 39.75 2.92
688 731 1.281925 CCCAGGTAGCACCCCTTCAT 61.282 60.000 0.00 0.00 39.75 2.57
689 732 1.923395 CCCAGGTAGCACCCCTTCA 60.923 63.158 0.00 0.00 39.75 3.02
690 733 2.998949 CCCAGGTAGCACCCCTTC 59.001 66.667 0.00 0.00 39.75 3.46
691 734 3.339093 GCCCAGGTAGCACCCCTT 61.339 66.667 0.00 0.00 39.75 3.95
694 737 4.426313 GTGGCCCAGGTAGCACCC 62.426 72.222 0.00 0.00 39.75 4.61
695 738 1.632018 TATGTGGCCCAGGTAGCACC 61.632 60.000 0.00 0.00 38.99 5.01
696 739 0.463833 GTATGTGGCCCAGGTAGCAC 60.464 60.000 0.00 0.00 0.00 4.40
697 740 1.632018 GGTATGTGGCCCAGGTAGCA 61.632 60.000 0.00 0.00 0.00 3.49
698 741 1.148498 GGTATGTGGCCCAGGTAGC 59.852 63.158 0.00 0.00 0.00 3.58
699 742 1.837090 GGGTATGTGGCCCAGGTAG 59.163 63.158 0.00 0.00 45.40 3.18
700 743 2.067605 CGGGTATGTGGCCCAGGTA 61.068 63.158 0.00 0.00 46.40 3.08
701 744 3.407967 CGGGTATGTGGCCCAGGT 61.408 66.667 0.00 0.00 46.40 4.00
702 745 4.189580 CCGGGTATGTGGCCCAGG 62.190 72.222 0.00 0.00 46.40 4.45
703 746 3.400599 GACCGGGTATGTGGCCCAG 62.401 68.421 6.32 0.00 46.40 4.45
704 747 2.533037 TAGACCGGGTATGTGGCCCA 62.533 60.000 6.32 0.00 46.40 5.36
705 748 1.763256 TAGACCGGGTATGTGGCCC 60.763 63.158 6.32 0.00 42.68 5.80
706 749 1.047034 AGTAGACCGGGTATGTGGCC 61.047 60.000 6.32 0.00 0.00 5.36
707 750 0.388294 GAGTAGACCGGGTATGTGGC 59.612 60.000 6.32 0.00 0.00 5.01
708 751 1.407979 GTGAGTAGACCGGGTATGTGG 59.592 57.143 6.32 0.00 0.00 4.17
709 752 1.407979 GGTGAGTAGACCGGGTATGTG 59.592 57.143 6.32 0.00 0.00 3.21
710 753 1.287146 AGGTGAGTAGACCGGGTATGT 59.713 52.381 6.32 0.00 41.35 2.29
711 754 2.068834 AGGTGAGTAGACCGGGTATG 57.931 55.000 6.32 0.00 41.35 2.39
712 755 3.830121 CTTAGGTGAGTAGACCGGGTAT 58.170 50.000 6.32 0.00 41.35 2.73
713 756 2.684927 GCTTAGGTGAGTAGACCGGGTA 60.685 54.545 6.32 0.00 41.35 3.69
714 757 1.959028 GCTTAGGTGAGTAGACCGGGT 60.959 57.143 6.32 0.00 41.35 5.28
715 758 0.745468 GCTTAGGTGAGTAGACCGGG 59.255 60.000 6.32 0.00 41.35 5.73
716 759 0.745468 GGCTTAGGTGAGTAGACCGG 59.255 60.000 0.00 0.00 41.35 5.28
717 760 1.765230 AGGCTTAGGTGAGTAGACCG 58.235 55.000 0.00 0.00 41.35 4.79
718 761 4.471548 TGATAGGCTTAGGTGAGTAGACC 58.528 47.826 0.00 0.00 36.09 3.85
719 762 5.770663 TGATGATAGGCTTAGGTGAGTAGAC 59.229 44.000 0.00 0.00 0.00 2.59
720 763 5.953571 TGATGATAGGCTTAGGTGAGTAGA 58.046 41.667 0.00 0.00 0.00 2.59
721 764 6.656632 TTGATGATAGGCTTAGGTGAGTAG 57.343 41.667 0.00 0.00 0.00 2.57
722 765 7.432148 TTTTGATGATAGGCTTAGGTGAGTA 57.568 36.000 0.00 0.00 0.00 2.59
723 766 5.957771 TTTGATGATAGGCTTAGGTGAGT 57.042 39.130 0.00 0.00 0.00 3.41
724 767 5.238214 GCTTTTGATGATAGGCTTAGGTGAG 59.762 44.000 0.00 0.00 0.00 3.51
725 768 5.126067 GCTTTTGATGATAGGCTTAGGTGA 58.874 41.667 0.00 0.00 0.00 4.02
726 769 4.276926 GGCTTTTGATGATAGGCTTAGGTG 59.723 45.833 0.00 0.00 0.00 4.00
727 770 4.079787 TGGCTTTTGATGATAGGCTTAGGT 60.080 41.667 0.00 0.00 35.66 3.08
728 771 4.464008 TGGCTTTTGATGATAGGCTTAGG 58.536 43.478 0.00 0.00 35.66 2.69
729 772 5.371526 TCTGGCTTTTGATGATAGGCTTAG 58.628 41.667 0.00 0.00 35.66 2.18
730 773 5.372343 TCTGGCTTTTGATGATAGGCTTA 57.628 39.130 0.00 0.00 35.66 3.09
731 774 4.240881 TCTGGCTTTTGATGATAGGCTT 57.759 40.909 0.00 0.00 35.66 4.35
732 775 3.939740 TCTGGCTTTTGATGATAGGCT 57.060 42.857 0.00 0.00 35.66 4.58
733 776 3.243334 GCTTCTGGCTTTTGATGATAGGC 60.243 47.826 0.00 0.00 38.06 3.93
734 777 3.317430 GGCTTCTGGCTTTTGATGATAGG 59.683 47.826 0.00 0.00 41.46 2.57
735 778 3.317430 GGGCTTCTGGCTTTTGATGATAG 59.683 47.826 0.00 0.00 41.46 2.08
736 779 3.290710 GGGCTTCTGGCTTTTGATGATA 58.709 45.455 0.00 0.00 41.46 2.15
737 780 2.105766 GGGCTTCTGGCTTTTGATGAT 58.894 47.619 0.00 0.00 41.46 2.45
738 781 1.549203 GGGCTTCTGGCTTTTGATGA 58.451 50.000 0.00 0.00 41.46 2.92
739 782 0.533951 GGGGCTTCTGGCTTTTGATG 59.466 55.000 0.00 0.00 41.46 3.07
740 783 0.114954 TGGGGCTTCTGGCTTTTGAT 59.885 50.000 0.00 0.00 41.46 2.57
741 784 0.540365 CTGGGGCTTCTGGCTTTTGA 60.540 55.000 0.00 0.00 41.46 2.69
742 785 1.969862 CTGGGGCTTCTGGCTTTTG 59.030 57.895 0.00 0.00 41.46 2.44
743 786 1.910276 GCTGGGGCTTCTGGCTTTT 60.910 57.895 0.00 0.00 41.46 2.27
744 787 2.283460 GCTGGGGCTTCTGGCTTT 60.283 61.111 0.00 0.00 41.46 3.51
745 788 4.372999 GGCTGGGGCTTCTGGCTT 62.373 66.667 0.00 0.00 41.46 4.35
748 791 4.479993 CTCGGCTGGGGCTTCTGG 62.480 72.222 0.00 0.00 38.73 3.86
749 792 3.672295 GACTCGGCTGGGGCTTCTG 62.672 68.421 0.00 0.00 38.73 3.02
750 793 3.394836 GACTCGGCTGGGGCTTCT 61.395 66.667 0.00 0.00 38.73 2.85
751 794 3.706373 TGACTCGGCTGGGGCTTC 61.706 66.667 0.00 0.00 38.73 3.86
752 795 4.021925 GTGACTCGGCTGGGGCTT 62.022 66.667 0.00 0.00 38.73 4.35
754 797 2.731571 TATGTGACTCGGCTGGGGC 61.732 63.158 0.00 0.00 37.82 5.80
755 798 1.144057 GTATGTGACTCGGCTGGGG 59.856 63.158 0.00 0.00 0.00 4.96
756 799 1.144057 GGTATGTGACTCGGCTGGG 59.856 63.158 0.00 0.00 0.00 4.45
757 800 1.226974 CGGTATGTGACTCGGCTGG 60.227 63.158 0.00 0.00 0.00 4.85
758 801 1.226974 CCGGTATGTGACTCGGCTG 60.227 63.158 0.00 0.00 35.84 4.85
759 802 2.423898 CCCGGTATGTGACTCGGCT 61.424 63.158 0.00 0.00 39.32 5.52
760 803 2.106332 CCCGGTATGTGACTCGGC 59.894 66.667 0.00 0.00 39.32 5.54
761 804 1.035932 AGACCCGGTATGTGACTCGG 61.036 60.000 0.00 0.00 39.95 4.63
762 805 0.100682 CAGACCCGGTATGTGACTCG 59.899 60.000 3.86 0.00 0.00 4.18
763 806 0.460311 CCAGACCCGGTATGTGACTC 59.540 60.000 11.23 0.00 0.00 3.36
764 807 0.976073 CCCAGACCCGGTATGTGACT 60.976 60.000 11.23 0.00 0.00 3.41
765 808 1.520666 CCCAGACCCGGTATGTGAC 59.479 63.158 11.23 0.00 0.00 3.67
766 809 1.687840 CCCCAGACCCGGTATGTGA 60.688 63.158 11.23 0.00 0.00 3.58
767 810 2.908015 CCCCAGACCCGGTATGTG 59.092 66.667 11.23 0.00 0.00 3.21
768 811 3.087906 GCCCCAGACCCGGTATGT 61.088 66.667 11.23 0.00 0.00 2.29
769 812 1.125093 TATGCCCCAGACCCGGTATG 61.125 60.000 5.11 5.11 0.00 2.39
770 813 0.400815 TTATGCCCCAGACCCGGTAT 60.401 55.000 0.00 0.00 0.00 2.73
771 814 0.620990 TTTATGCCCCAGACCCGGTA 60.621 55.000 0.00 0.00 0.00 4.02
772 815 1.926489 TTTATGCCCCAGACCCGGT 60.926 57.895 0.00 0.00 0.00 5.28
773 816 1.453197 GTTTATGCCCCAGACCCGG 60.453 63.158 0.00 0.00 0.00 5.73
774 817 0.748005 CAGTTTATGCCCCAGACCCG 60.748 60.000 0.00 0.00 0.00 5.28
775 818 0.395724 CCAGTTTATGCCCCAGACCC 60.396 60.000 0.00 0.00 0.00 4.46
776 819 0.331616 ACCAGTTTATGCCCCAGACC 59.668 55.000 0.00 0.00 0.00 3.85
777 820 1.282157 AGACCAGTTTATGCCCCAGAC 59.718 52.381 0.00 0.00 0.00 3.51
778 821 1.281867 CAGACCAGTTTATGCCCCAGA 59.718 52.381 0.00 0.00 0.00 3.86
779 822 1.281867 TCAGACCAGTTTATGCCCCAG 59.718 52.381 0.00 0.00 0.00 4.45
780 823 1.004277 GTCAGACCAGTTTATGCCCCA 59.996 52.381 0.00 0.00 0.00 4.96
781 824 1.751437 GTCAGACCAGTTTATGCCCC 58.249 55.000 0.00 0.00 0.00 5.80
782 825 1.369625 CGTCAGACCAGTTTATGCCC 58.630 55.000 0.00 0.00 0.00 5.36
783 826 0.727398 GCGTCAGACCAGTTTATGCC 59.273 55.000 0.00 0.00 0.00 4.40
784 827 1.128692 GTGCGTCAGACCAGTTTATGC 59.871 52.381 0.00 0.00 0.00 3.14
785 828 2.668457 GAGTGCGTCAGACCAGTTTATG 59.332 50.000 0.00 0.00 0.00 1.90
786 829 2.299013 TGAGTGCGTCAGACCAGTTTAT 59.701 45.455 0.00 0.00 0.00 1.40
787 830 1.684450 TGAGTGCGTCAGACCAGTTTA 59.316 47.619 0.00 0.00 0.00 2.01
788 831 0.464036 TGAGTGCGTCAGACCAGTTT 59.536 50.000 0.00 0.00 0.00 2.66
789 832 0.249489 GTGAGTGCGTCAGACCAGTT 60.249 55.000 0.00 0.00 35.13 3.16
790 833 1.364171 GTGAGTGCGTCAGACCAGT 59.636 57.895 0.00 0.00 35.13 4.00
791 834 0.037882 ATGTGAGTGCGTCAGACCAG 60.038 55.000 0.00 0.00 35.13 4.00
792 835 0.319813 CATGTGAGTGCGTCAGACCA 60.320 55.000 0.00 0.00 35.13 4.02
793 836 0.038251 TCATGTGAGTGCGTCAGACC 60.038 55.000 0.00 0.00 35.13 3.85
794 837 1.457303 GTTCATGTGAGTGCGTCAGAC 59.543 52.381 0.00 0.00 35.13 3.51
795 838 1.341209 AGTTCATGTGAGTGCGTCAGA 59.659 47.619 0.00 0.00 35.13 3.27
796 839 1.788258 AGTTCATGTGAGTGCGTCAG 58.212 50.000 0.00 0.00 35.13 3.51
797 840 2.296190 ACTAGTTCATGTGAGTGCGTCA 59.704 45.455 0.00 0.00 0.00 4.35
798 841 2.947852 ACTAGTTCATGTGAGTGCGTC 58.052 47.619 0.00 0.00 0.00 5.19
799 842 3.386768 AACTAGTTCATGTGAGTGCGT 57.613 42.857 1.12 0.00 0.00 5.24
800 843 3.990469 AGAAACTAGTTCATGTGAGTGCG 59.010 43.478 8.95 0.00 38.86 5.34
801 844 7.201565 GGAATAGAAACTAGTTCATGTGAGTGC 60.202 40.741 8.95 0.00 38.86 4.40
802 845 8.037758 AGGAATAGAAACTAGTTCATGTGAGTG 58.962 37.037 8.95 0.00 38.86 3.51
803 846 8.037758 CAGGAATAGAAACTAGTTCATGTGAGT 58.962 37.037 8.95 0.00 38.86 3.41
804 847 8.037758 ACAGGAATAGAAACTAGTTCATGTGAG 58.962 37.037 8.95 0.00 41.99 3.51
805 848 7.907389 ACAGGAATAGAAACTAGTTCATGTGA 58.093 34.615 8.95 0.00 41.99 3.58
806 849 8.553459 AACAGGAATAGAAACTAGTTCATGTG 57.447 34.615 8.95 2.05 42.52 3.21
807 850 9.220767 GAAACAGGAATAGAAACTAGTTCATGT 57.779 33.333 8.95 6.53 44.40 3.21
808 851 9.219603 TGAAACAGGAATAGAAACTAGTTCATG 57.780 33.333 8.95 5.86 38.86 3.07
809 852 9.965902 ATGAAACAGGAATAGAAACTAGTTCAT 57.034 29.630 8.95 3.19 38.86 2.57
880 927 6.231211 TGTTTCTCCTCTTCTATCCACAAAC 58.769 40.000 0.00 0.00 0.00 2.93
901 948 8.470002 AGCAAAACAAACTTTAGAGAAGATGTT 58.530 29.630 0.00 8.04 34.74 2.71
909 956 8.687824 TTTCAGAAGCAAAACAAACTTTAGAG 57.312 30.769 0.00 0.00 0.00 2.43
910 957 9.139174 CTTTTCAGAAGCAAAACAAACTTTAGA 57.861 29.630 0.00 0.00 0.00 2.10
911 958 8.382875 CCTTTTCAGAAGCAAAACAAACTTTAG 58.617 33.333 0.00 0.00 0.00 1.85
913 960 6.934083 TCCTTTTCAGAAGCAAAACAAACTTT 59.066 30.769 0.00 0.00 0.00 2.66
946 996 5.491982 CAAGAGGGCAAGTCAAGTTACTAT 58.508 41.667 0.00 0.00 0.00 2.12
1009 1059 2.302733 CCCCAGGACAATTTTCCCTTTG 59.697 50.000 7.03 0.00 36.12 2.77
1040 1090 3.181440 TGTCAGCCATGTCCTTCTTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
1041 1091 2.373169 TGTCAGCCATGTCCTTCTTCTT 59.627 45.455 0.00 0.00 0.00 2.52
1128 1184 2.087646 GGCCTTGCTTGAACCTTCTAG 58.912 52.381 0.00 0.00 33.97 2.43
1458 1520 3.562973 ACTTGTCTGCATTCACTGAACAG 59.437 43.478 0.00 0.00 0.00 3.16
1491 1582 5.623673 CACACAACGAAAAGCAATTACTACC 59.376 40.000 0.00 0.00 0.00 3.18
1507 1598 1.062365 CCTGCACACACACACAACG 59.938 57.895 0.00 0.00 0.00 4.10
1719 1822 4.938226 CACCTATGTTCAGAAGGAAGGAAC 59.062 45.833 10.35 0.00 40.91 3.62
1791 2228 4.274147 TGACCTCCTCTACTGTGATTCTC 58.726 47.826 0.00 0.00 0.00 2.87
1829 2266 1.843851 TCAGTTTGGGGTCTTGTGAGT 59.156 47.619 0.00 0.00 0.00 3.41
1832 2269 3.699038 TCTTTTCAGTTTGGGGTCTTGTG 59.301 43.478 0.00 0.00 0.00 3.33
1834 2271 4.829492 AGATCTTTTCAGTTTGGGGTCTTG 59.171 41.667 0.00 0.00 0.00 3.02
2009 2475 6.576778 AATACCTCTATGTAGCCCAAGTTT 57.423 37.500 0.00 0.00 0.00 2.66
2119 2643 1.091771 AACCATGCCGCGAATCTCTG 61.092 55.000 8.23 0.00 0.00 3.35
2319 2843 5.763204 CCTCTACAAAGAAGGTAAACTGCAA 59.237 40.000 0.00 0.00 0.00 4.08
2393 2917 2.067365 ACTTCCAAACGAAAAGGGCT 57.933 45.000 0.00 0.00 0.00 5.19
2403 2927 3.435671 CGGTACTGGATGAACTTCCAAAC 59.564 47.826 9.96 10.31 45.03 2.93
2426 2950 5.794687 TGATGTTAAATACAGCTCGGTTG 57.205 39.130 0.00 0.00 43.54 3.77
2623 3147 7.859325 TCCTTACTTAATGCAGAAATACCAC 57.141 36.000 0.00 0.00 0.00 4.16
2646 6397 7.978975 GTCAGCAGGTTATTCTCAGGATATATC 59.021 40.741 3.96 3.96 0.00 1.63
2648 6399 6.071896 CGTCAGCAGGTTATTCTCAGGATATA 60.072 42.308 0.00 0.00 0.00 0.86
2721 6644 4.450976 CTGCTATTACCTGCACAATGGTA 58.549 43.478 0.00 0.00 37.74 3.25
2722 6645 3.282021 CTGCTATTACCTGCACAATGGT 58.718 45.455 0.57 0.57 40.12 3.55
2723 6646 2.033801 GCTGCTATTACCTGCACAATGG 59.966 50.000 0.00 0.00 35.20 3.16
2781 6717 5.191426 AGAGGAAAATCACATGTCAGATGG 58.809 41.667 0.00 0.00 0.00 3.51
3075 7011 3.572682 TCAGATACAGACTTGTTCCGTGT 59.427 43.478 0.00 0.00 38.76 4.49
3146 7082 9.451002 CTGATCATTAGAATTCTCTATTGGCAT 57.549 33.333 12.24 0.00 36.67 4.40
3147 7083 8.654094 TCTGATCATTAGAATTCTCTATTGGCA 58.346 33.333 12.24 3.26 36.67 4.92
3148 7084 9.499479 TTCTGATCATTAGAATTCTCTATTGGC 57.501 33.333 12.24 0.00 36.67 4.52
3199 7156 5.728637 AGCGATATACATCCATGTCTGAA 57.271 39.130 0.00 0.00 41.97 3.02
3215 7172 8.824756 AATATAGGAAGACAGGATAAGCGATA 57.175 34.615 0.00 0.00 0.00 2.92
3310 7267 6.877236 TGAAAAGCCATATGAAAGGGATTTC 58.123 36.000 3.65 5.88 39.19 2.17
3314 7271 5.721000 ACAATGAAAAGCCATATGAAAGGGA 59.279 36.000 3.65 0.00 0.00 4.20
3369 7327 8.926715 AAAGAAAAGACAGTAAATTTGTGTCC 57.073 30.769 22.44 12.83 41.33 4.02
3416 7374 2.028294 CCATGTTAAATGGCTTGGCACA 60.028 45.455 0.00 0.00 31.75 4.57
3518 7482 7.658538 AGGATATACCGCAACCTGTTTAGGAT 61.659 42.308 0.00 0.00 44.74 3.24
3592 7560 1.834263 GAAGATGTACTGCCCACTCCT 59.166 52.381 0.00 0.00 0.00 3.69
3654 7623 6.644592 TGTTTTCTTTTTCTCAAAGTGTGTGG 59.355 34.615 0.00 0.00 0.00 4.17
3858 7828 5.084818 AGACAAACCAAAGACCCAAAAAG 57.915 39.130 0.00 0.00 0.00 2.27
3867 7837 4.080807 TGTGGTCACTAGACAAACCAAAGA 60.081 41.667 0.00 0.00 46.80 2.52
3868 7838 4.196193 TGTGGTCACTAGACAAACCAAAG 58.804 43.478 0.00 0.00 46.80 2.77
3927 7897 6.940298 TCTATTCGTTCTCCAAAACATCCTTT 59.060 34.615 0.00 0.00 0.00 3.11
3932 7902 9.265901 CATATCTCTATTCGTTCTCCAAAACAT 57.734 33.333 0.00 0.00 0.00 2.71
3933 7903 7.224753 GCATATCTCTATTCGTTCTCCAAAACA 59.775 37.037 0.00 0.00 0.00 2.83
3935 7905 6.706270 GGCATATCTCTATTCGTTCTCCAAAA 59.294 38.462 0.00 0.00 0.00 2.44
3936 7906 6.183360 TGGCATATCTCTATTCGTTCTCCAAA 60.183 38.462 0.00 0.00 0.00 3.28
3937 7907 5.304357 TGGCATATCTCTATTCGTTCTCCAA 59.696 40.000 0.00 0.00 0.00 3.53
3938 7908 4.832823 TGGCATATCTCTATTCGTTCTCCA 59.167 41.667 0.00 0.00 0.00 3.86
3939 7909 5.392767 TGGCATATCTCTATTCGTTCTCC 57.607 43.478 0.00 0.00 0.00 3.71
3940 7910 8.865001 GTTATTGGCATATCTCTATTCGTTCTC 58.135 37.037 0.00 0.00 0.00 2.87
3941 7911 8.367911 TGTTATTGGCATATCTCTATTCGTTCT 58.632 33.333 0.00 0.00 0.00 3.01
3942 7912 8.534333 TGTTATTGGCATATCTCTATTCGTTC 57.466 34.615 0.00 0.00 0.00 3.95
3943 7913 8.774586 GTTGTTATTGGCATATCTCTATTCGTT 58.225 33.333 0.00 0.00 0.00 3.85
3944 7914 7.116376 CGTTGTTATTGGCATATCTCTATTCGT 59.884 37.037 0.00 0.00 0.00 3.85
3945 7915 7.116376 ACGTTGTTATTGGCATATCTCTATTCG 59.884 37.037 0.00 0.00 0.00 3.34
3946 7916 8.223769 CACGTTGTTATTGGCATATCTCTATTC 58.776 37.037 0.00 0.00 0.00 1.75
3947 7917 7.715249 ACACGTTGTTATTGGCATATCTCTATT 59.285 33.333 0.00 0.00 0.00 1.73
3948 7918 7.171508 CACACGTTGTTATTGGCATATCTCTAT 59.828 37.037 0.00 0.00 0.00 1.98
3949 7919 6.478673 CACACGTTGTTATTGGCATATCTCTA 59.521 38.462 0.00 0.00 0.00 2.43
3950 7920 5.294306 CACACGTTGTTATTGGCATATCTCT 59.706 40.000 0.00 0.00 0.00 3.10
3951 7921 5.293324 TCACACGTTGTTATTGGCATATCTC 59.707 40.000 0.00 0.00 0.00 2.75
3952 7922 5.064707 GTCACACGTTGTTATTGGCATATCT 59.935 40.000 0.00 0.00 0.00 1.98
3953 7923 5.163804 TGTCACACGTTGTTATTGGCATATC 60.164 40.000 0.00 0.00 0.00 1.63
3954 7924 4.697828 TGTCACACGTTGTTATTGGCATAT 59.302 37.500 0.00 0.00 0.00 1.78
3955 7925 4.065789 TGTCACACGTTGTTATTGGCATA 58.934 39.130 0.00 0.00 0.00 3.14
3956 7926 2.881513 TGTCACACGTTGTTATTGGCAT 59.118 40.909 0.00 0.00 0.00 4.40
3957 7927 2.289274 CTGTCACACGTTGTTATTGGCA 59.711 45.455 0.00 0.00 0.00 4.92
3958 7928 2.546368 TCTGTCACACGTTGTTATTGGC 59.454 45.455 0.00 0.00 0.00 4.52
3959 7929 4.804608 TTCTGTCACACGTTGTTATTGG 57.195 40.909 0.00 0.00 0.00 3.16
3960 7930 6.795114 GGTAATTCTGTCACACGTTGTTATTG 59.205 38.462 0.00 0.00 0.00 1.90
3961 7931 6.708949 AGGTAATTCTGTCACACGTTGTTATT 59.291 34.615 0.00 0.00 0.00 1.40
3962 7932 6.228258 AGGTAATTCTGTCACACGTTGTTAT 58.772 36.000 0.00 0.00 0.00 1.89
3963 7933 5.603596 AGGTAATTCTGTCACACGTTGTTA 58.396 37.500 0.00 0.00 0.00 2.41
3969 7939 5.509163 CCCCTATAGGTAATTCTGTCACACG 60.509 48.000 17.72 0.00 0.00 4.49
3978 7948 4.349930 TGAAGCACCCCCTATAGGTAATTC 59.650 45.833 17.72 12.05 35.24 2.17
3985 7955 5.568620 AGTATTTGAAGCACCCCCTATAG 57.431 43.478 0.00 0.00 0.00 1.31
4011 7981 4.481368 AGATTACGCTACATTTGGGACA 57.519 40.909 0.00 0.00 0.00 4.02
4012 7982 4.495844 GCAAGATTACGCTACATTTGGGAC 60.496 45.833 0.00 0.00 0.00 4.46
4013 7983 3.625764 GCAAGATTACGCTACATTTGGGA 59.374 43.478 0.00 0.00 0.00 4.37
4015 7985 4.882671 AGCAAGATTACGCTACATTTGG 57.117 40.909 0.00 0.00 36.50 3.28
4016 7986 8.667987 TTTTAAGCAAGATTACGCTACATTTG 57.332 30.769 0.00 0.00 37.54 2.32
4042 8289 6.935167 TCACAATGCTTCAGACATCTAAGTA 58.065 36.000 0.00 0.00 0.00 2.24
4048 8295 5.706916 ACAATTCACAATGCTTCAGACATC 58.293 37.500 0.00 0.00 0.00 3.06
4101 8348 4.462508 TCAGTTCCATCAAGTAGAGCAG 57.537 45.455 0.00 0.00 0.00 4.24
4280 8534 6.554605 TGGGATCAGAAAAAGGAGTTTGAAAT 59.445 34.615 0.00 0.00 0.00 2.17
4283 8537 5.060427 TGGGATCAGAAAAAGGAGTTTGA 57.940 39.130 0.00 0.00 0.00 2.69
4284 8538 5.776744 CTTGGGATCAGAAAAAGGAGTTTG 58.223 41.667 0.00 0.00 0.00 2.93
4286 8540 3.829026 GCTTGGGATCAGAAAAAGGAGTT 59.171 43.478 0.00 0.00 0.00 3.01
4287 8541 3.075134 AGCTTGGGATCAGAAAAAGGAGT 59.925 43.478 0.00 0.00 0.00 3.85
4288 8542 3.694926 AGCTTGGGATCAGAAAAAGGAG 58.305 45.455 0.00 0.00 0.00 3.69
4289 8543 3.814504 AGCTTGGGATCAGAAAAAGGA 57.185 42.857 0.00 0.00 0.00 3.36
4290 8544 4.039609 ACAAAGCTTGGGATCAGAAAAAGG 59.960 41.667 5.66 0.00 34.12 3.11
4294 8548 4.648762 TCAAACAAAGCTTGGGATCAGAAA 59.351 37.500 5.66 0.00 34.12 2.52
4304 8558 7.189693 TCTAGTACATGTCAAACAAAGCTTG 57.810 36.000 0.00 0.00 0.00 4.01
4307 8564 7.244192 GGAATCTAGTACATGTCAAACAAAGC 58.756 38.462 0.00 0.00 0.00 3.51
4418 8676 1.452108 GATCAAAGGGGTGGCTCCG 60.452 63.158 0.00 0.00 37.00 4.63
4509 8770 3.312736 TGGTTTCTTCTTTCCCTTGCT 57.687 42.857 0.00 0.00 0.00 3.91
4516 8777 6.331369 TGGTCATGAATGGTTTCTTCTTTC 57.669 37.500 0.00 0.00 32.78 2.62
4574 8835 2.376518 TCTGAACCATTCAAAGGAGCCT 59.623 45.455 0.00 0.00 39.58 4.58
4616 8877 0.179000 CCCCATCCTTGTCCTTCTCG 59.821 60.000 0.00 0.00 0.00 4.04
4634 8895 1.168714 GGTTGTGGAGCTCAATCACC 58.831 55.000 17.19 10.81 0.00 4.02
4736 8997 2.484947 GGTCCCGGACAGAATATCAACC 60.485 54.545 19.43 0.00 33.68 3.77
4754 9015 1.668151 GTGGGTCTTGACGCTGGTC 60.668 63.158 16.63 4.19 43.71 4.02
4838 9099 1.211969 GCAGCGAGAAGACGTACCA 59.788 57.895 0.00 0.00 35.59 3.25
4855 9119 2.950309 AGATCAATGTGAGAATGGCAGC 59.050 45.455 0.00 0.00 0.00 5.25
4856 9120 3.315470 CCAGATCAATGTGAGAATGGCAG 59.685 47.826 0.00 0.00 0.00 4.85
4857 9121 3.284617 CCAGATCAATGTGAGAATGGCA 58.715 45.455 0.00 0.00 0.00 4.92
4904 9168 2.120232 GTGTTAGCAGACGATCGATGG 58.880 52.381 24.34 3.61 0.00 3.51
4923 9187 7.721399 CCCTGAAGCAGAATTATATTAAGGTGT 59.279 37.037 0.00 0.00 32.44 4.16
4933 9197 5.583932 AGAAAACCCCTGAAGCAGAATTAT 58.416 37.500 0.00 0.00 32.44 1.28
5127 9391 5.712217 TTACCATTTCTCGTGATAAAGCG 57.288 39.130 0.00 0.00 0.00 4.68
5128 9392 8.138365 TGTATTACCATTTCTCGTGATAAAGC 57.862 34.615 0.00 0.00 0.00 3.51
5129 9393 8.765219 CCTGTATTACCATTTCTCGTGATAAAG 58.235 37.037 0.00 0.00 0.00 1.85
5130 9394 8.262227 ACCTGTATTACCATTTCTCGTGATAAA 58.738 33.333 0.00 0.00 0.00 1.40
5131 9395 7.788026 ACCTGTATTACCATTTCTCGTGATAA 58.212 34.615 0.00 0.00 0.00 1.75
5132 9396 7.356089 ACCTGTATTACCATTTCTCGTGATA 57.644 36.000 0.00 0.00 0.00 2.15
5133 9397 6.235231 ACCTGTATTACCATTTCTCGTGAT 57.765 37.500 0.00 0.00 0.00 3.06
5134 9398 5.670792 ACCTGTATTACCATTTCTCGTGA 57.329 39.130 0.00 0.00 0.00 4.35
5135 9399 6.737254 AAACCTGTATTACCATTTCTCGTG 57.263 37.500 0.00 0.00 0.00 4.35
5136 9400 7.754851 AAAAACCTGTATTACCATTTCTCGT 57.245 32.000 0.00 0.00 0.00 4.18
5145 9409 8.248253 CCAGTCCAAATAAAAACCTGTATTACC 58.752 37.037 0.00 0.00 0.00 2.85
5198 9594 4.607235 CAGTTTCGCGATTTGTTCAGTAAC 59.393 41.667 10.88 7.29 36.07 2.50
5232 9629 1.145819 CCTAGAGCAGAGCAAGCCC 59.854 63.158 0.00 0.00 0.00 5.19
5274 9671 5.766150 TTGTTGTCGGAGTTGATTTTCAT 57.234 34.783 0.00 0.00 0.00 2.57
5326 9723 2.017559 CTTGTCCGATCGACCTCCCC 62.018 65.000 18.66 0.00 41.18 4.81
5350 9747 5.220873 GCTATTTTCGTTCTTCTGGGAATCC 60.221 44.000 0.00 0.00 0.00 3.01
5399 9796 3.783642 TGTATTAGGGTACAGGTGGCATT 59.216 43.478 0.00 0.00 31.33 3.56
5417 9814 9.897744 CACTTGTGAAATGAACTTATTGTGTAT 57.102 29.630 0.00 0.00 0.00 2.29
5459 9856 5.835257 ACTGCTCTGTACTTTTGTTACGTA 58.165 37.500 0.00 0.00 0.00 3.57
5460 9857 4.690122 ACTGCTCTGTACTTTTGTTACGT 58.310 39.130 0.00 0.00 0.00 3.57
5461 9858 6.946229 ATACTGCTCTGTACTTTTGTTACG 57.054 37.500 0.00 0.00 0.00 3.18
5462 9859 8.983307 AGTATACTGCTCTGTACTTTTGTTAC 57.017 34.615 4.10 0.00 0.00 2.50
5525 9922 4.016444 TGGAGAATGAACTTATTGTGGGC 58.984 43.478 0.00 0.00 0.00 5.36
5546 9962 5.163683 CCTTGGAAGAAATACAGCTGTCATG 60.164 44.000 25.56 13.68 0.00 3.07
5547 9963 4.946157 CCTTGGAAGAAATACAGCTGTCAT 59.054 41.667 25.56 10.83 0.00 3.06
5548 9964 4.326826 CCTTGGAAGAAATACAGCTGTCA 58.673 43.478 25.56 9.73 0.00 3.58
5549 9965 3.691609 CCCTTGGAAGAAATACAGCTGTC 59.308 47.826 25.56 9.12 0.00 3.51
5550 9966 3.330701 TCCCTTGGAAGAAATACAGCTGT 59.669 43.478 25.12 25.12 0.00 4.40
5551 9967 3.955471 TCCCTTGGAAGAAATACAGCTG 58.045 45.455 13.48 13.48 0.00 4.24
5552 9968 4.657814 TTCCCTTGGAAGAAATACAGCT 57.342 40.909 0.00 0.00 36.71 4.24
5553 9969 5.921962 AATTCCCTTGGAAGAAATACAGC 57.078 39.130 1.64 0.00 45.48 4.40
5554 9970 7.938140 TGTAATTCCCTTGGAAGAAATACAG 57.062 36.000 1.64 0.00 45.48 2.74
5555 9971 9.983024 TTATGTAATTCCCTTGGAAGAAATACA 57.017 29.630 1.64 8.30 45.48 2.29
5557 9973 9.416284 GGTTATGTAATTCCCTTGGAAGAAATA 57.584 33.333 1.64 0.00 45.48 1.40
5558 9974 7.898636 TGGTTATGTAATTCCCTTGGAAGAAAT 59.101 33.333 1.64 0.00 45.48 2.17
5559 9975 7.177744 GTGGTTATGTAATTCCCTTGGAAGAAA 59.822 37.037 1.64 0.00 45.48 2.52
5560 9976 6.661805 GTGGTTATGTAATTCCCTTGGAAGAA 59.338 38.462 1.64 0.00 45.48 2.52
5561 9977 6.184789 GTGGTTATGTAATTCCCTTGGAAGA 58.815 40.000 1.64 0.00 45.48 2.87
5562 9978 5.949354 TGTGGTTATGTAATTCCCTTGGAAG 59.051 40.000 1.64 0.00 45.48 3.46
5563 9979 5.893500 TGTGGTTATGTAATTCCCTTGGAA 58.106 37.500 0.00 0.00 46.39 3.53
5564 9980 5.522315 TGTGGTTATGTAATTCCCTTGGA 57.478 39.130 0.00 0.00 0.00 3.53
5565 9981 5.949354 TCTTGTGGTTATGTAATTCCCTTGG 59.051 40.000 0.00 0.00 0.00 3.61
5601 10017 5.340667 CACCGTACGTTCTTTAGTGAGTTAC 59.659 44.000 15.21 0.00 0.00 2.50
5764 10183 4.048970 TCTAGGAGGCTACACATATCCC 57.951 50.000 0.00 0.00 0.00 3.85
5771 10190 3.223435 TGCAGTATCTAGGAGGCTACAC 58.777 50.000 0.00 0.00 0.00 2.90
5931 10350 5.547465 ACTCGGATGAACACAACTTCATTA 58.453 37.500 0.00 0.00 40.33 1.90
5947 10366 2.619177 CGACTACTCATGGAACTCGGAT 59.381 50.000 0.00 0.00 0.00 4.18
5990 10409 2.043852 GGACGAGGAGGAGGAGCA 60.044 66.667 0.00 0.00 0.00 4.26
5991 10410 1.826487 GAGGACGAGGAGGAGGAGC 60.826 68.421 0.00 0.00 0.00 4.70
5992 10411 1.152839 GGAGGACGAGGAGGAGGAG 60.153 68.421 0.00 0.00 0.00 3.69
5993 10412 1.619975 AGGAGGACGAGGAGGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
5994 10413 1.152839 GAGGAGGACGAGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
5995 10414 0.184933 ATGAGGAGGACGAGGAGGAG 59.815 60.000 0.00 0.00 0.00 3.69
6004 10423 2.702478 TGGTGATGATGATGAGGAGGAC 59.298 50.000 0.00 0.00 0.00 3.85
6043 10603 2.605580 CGATGACGATGATGGTGACGAT 60.606 50.000 0.00 0.00 42.66 3.73
6139 10732 7.034397 ACGATGACTATGATGATCATGATGAC 58.966 38.462 17.74 6.96 37.70 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.