Multiple sequence alignment - TraesCS5A01G527300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G527300 chr5A 100.000 3629 0 0 1 3629 687872463 687876091 0.000000e+00 6702.0
1 TraesCS5A01G527300 chr5A 94.761 649 34 0 1080 1728 687937388 687936740 0.000000e+00 1011.0
2 TraesCS5A01G527300 chr5A 84.115 384 38 11 2126 2503 687936255 687935889 2.070000e-92 350.0
3 TraesCS5A01G527300 chr5A 90.000 150 10 2 1792 1936 687936731 687936582 4.780000e-44 189.0
4 TraesCS5A01G527300 chr4D 87.973 2486 142 68 720 3132 503450426 503452827 0.000000e+00 2789.0
5 TraesCS5A01G527300 chr4D 93.890 671 34 4 1043 1706 503507564 503506894 0.000000e+00 1005.0
6 TraesCS5A01G527300 chr4D 88.623 668 58 12 1008 1668 503498391 503499047 0.000000e+00 797.0
7 TraesCS5A01G527300 chr4D 89.840 374 32 5 3 371 503448228 503448600 3.280000e-130 475.0
8 TraesCS5A01G527300 chr4D 93.333 270 18 0 1812 2081 503506842 503506573 2.030000e-107 399.0
9 TraesCS5A01G527300 chr4D 84.406 404 49 10 2241 2642 503499824 503500215 5.680000e-103 385.0
10 TraesCS5A01G527300 chr4D 92.720 261 19 0 1812 2072 503499448 503499708 9.510000e-101 377.0
11 TraesCS5A01G527300 chr4D 85.714 350 30 12 2243 2586 503506400 503506065 5.770000e-93 351.0
12 TraesCS5A01G527300 chr4D 80.220 182 18 9 112 275 503482506 503482687 1.770000e-23 121.0
13 TraesCS5A01G527300 chr4D 92.063 63 4 1 1662 1724 503499350 503499411 1.800000e-13 87.9
14 TraesCS5A01G527300 chr4D 85.938 64 4 2 3069 3132 503500597 503500655 3.030000e-06 63.9
15 TraesCS5A01G527300 chr4B 90.348 1409 73 21 690 2072 648914277 648912906 0.000000e+00 1790.0
16 TraesCS5A01G527300 chr4B 93.003 686 40 4 1043 1727 649223001 649222323 0.000000e+00 994.0
17 TraesCS5A01G527300 chr4B 92.996 671 40 4 1043 1706 648572520 648573190 0.000000e+00 972.0
18 TraesCS5A01G527300 chr4B 91.222 581 42 7 1060 1632 648695671 648695092 0.000000e+00 782.0
19 TraesCS5A01G527300 chr4B 91.968 498 19 7 2149 2646 648912875 648912399 0.000000e+00 678.0
20 TraesCS5A01G527300 chr4B 92.088 455 32 4 2 454 648915944 648915492 3.950000e-179 638.0
21 TraesCS5A01G527300 chr4B 96.198 263 10 0 1812 2074 649222282 649222020 7.200000e-117 431.0
22 TraesCS5A01G527300 chr4B 93.284 268 18 0 1814 2081 648573243 648573510 2.630000e-106 396.0
23 TraesCS5A01G527300 chr4B 82.556 493 32 27 2128 2586 649221921 649221449 5.680000e-103 385.0
24 TraesCS5A01G527300 chr4B 90.592 287 21 5 1791 2074 648695044 648694761 3.420000e-100 375.0
25 TraesCS5A01G527300 chr4B 86.087 345 29 6 690 1034 648572147 648572472 1.600000e-93 353.0
26 TraesCS5A01G527300 chr4B 83.733 375 28 16 1933 2292 18702062 18702418 1.260000e-84 324.0
27 TraesCS5A01G527300 chr4B 82.469 405 26 19 2126 2516 648573597 648573970 2.720000e-81 313.0
28 TraesCS5A01G527300 chr4B 90.141 213 17 4 105 315 648567340 648567550 1.280000e-69 274.0
29 TraesCS5A01G527300 chr4B 78.400 375 47 21 2754 3117 648694167 648693816 2.840000e-51 213.0
30 TraesCS5A01G527300 chr4B 79.439 321 24 17 2735 3036 648912089 648911792 4.780000e-44 189.0
31 TraesCS5A01G527300 chr4B 89.655 145 11 3 313 454 648567813 648567956 8.000000e-42 182.0
32 TraesCS5A01G527300 chr4B 77.183 355 40 27 2297 2645 648694612 648694293 6.230000e-38 169.0
33 TraesCS5A01G527300 chr4B 83.799 179 22 5 101 274 649126591 649126767 2.900000e-36 163.0
34 TraesCS5A01G527300 chr4B 76.449 276 27 21 2862 3132 649180801 649181043 8.230000e-22 115.0
35 TraesCS5A01G527300 chr4B 90.625 64 6 0 1664 1727 648695104 648695041 6.460000e-13 86.1
36 TraesCS5A01G527300 chr4B 90.476 63 3 2 485 544 648567966 648568028 3.000000e-11 80.5
37 TraesCS5A01G527300 chr4B 97.619 42 1 0 3082 3123 648911786 648911745 5.030000e-09 73.1
38 TraesCS5A01G527300 chr4B 86.486 74 1 4 2659 2732 648912318 648912254 5.030000e-09 73.1
39 TraesCS5A01G527300 chr7D 88.962 607 32 14 1846 2443 569233163 569232583 0.000000e+00 717.0
40 TraesCS5A01G527300 chr7D 80.374 107 17 4 2 105 246807915 246808020 1.080000e-10 78.7
41 TraesCS5A01G527300 chr6D 88.595 605 38 14 1846 2443 17447939 17447359 0.000000e+00 706.0
42 TraesCS5A01G527300 chr3A 96.585 410 13 1 3138 3546 727290293 727289884 0.000000e+00 678.0
43 TraesCS5A01G527300 chr3A 95.771 402 17 0 3138 3539 676815385 676814984 0.000000e+00 649.0
44 TraesCS5A01G527300 chr1A 96.526 403 14 0 3138 3540 406172565 406172967 0.000000e+00 667.0
45 TraesCS5A01G527300 chr1A 95.739 399 16 1 3139 3537 471968522 471968919 3.050000e-180 641.0
46 TraesCS5A01G527300 chr2A 96.078 408 13 3 3138 3544 638304420 638304015 0.000000e+00 662.0
47 TraesCS5A01G527300 chr2A 84.524 84 11 2 19 101 494960312 494960230 8.350000e-12 82.4
48 TraesCS5A01G527300 chr6A 94.776 402 17 2 3138 3539 562250025 562250422 1.110000e-174 623.0
49 TraesCS5A01G527300 chr6A 94.045 403 18 3 3138 3540 176999801 177000197 1.110000e-169 606.0
50 TraesCS5A01G527300 chr4A 95.619 388 17 0 3153 3540 552811015 552810628 1.110000e-174 623.0
51 TraesCS5A01G527300 chr3D 93.596 406 23 2 3140 3545 184141164 184141566 1.440000e-168 603.0
52 TraesCS5A01G527300 chr1B 89.000 300 31 2 1045 1343 280756387 280756089 1.590000e-98 370.0
53 TraesCS5A01G527300 chr2D 86.139 101 12 2 2 101 366095085 366094986 1.380000e-19 108.0
54 TraesCS5A01G527300 chr7B 92.453 53 3 1 26 77 217306948 217306896 1.400000e-09 75.0
55 TraesCS5A01G527300 chr7B 78.505 107 19 3 2 105 223174028 223174133 2.340000e-07 67.6
56 TraesCS5A01G527300 chr7B 95.000 40 2 0 50 89 158187708 158187747 3.030000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G527300 chr5A 687872463 687876091 3628 False 6702.000000 6702 100.000000 1 3629 1 chr5A.!!$F1 3628
1 TraesCS5A01G527300 chr5A 687935889 687937388 1499 True 516.666667 1011 89.625333 1080 2503 3 chr5A.!!$R1 1423
2 TraesCS5A01G527300 chr4D 503448228 503452827 4599 False 1632.000000 2789 88.906500 3 3132 2 chr4D.!!$F2 3129
3 TraesCS5A01G527300 chr4D 503506065 503507564 1499 True 585.000000 1005 90.979000 1043 2586 3 chr4D.!!$R1 1543
4 TraesCS5A01G527300 chr4D 503498391 503500655 2264 False 342.160000 797 88.750000 1008 3132 5 chr4D.!!$F3 2124
5 TraesCS5A01G527300 chr4B 649221449 649223001 1552 True 603.333333 994 90.585667 1043 2586 3 chr4B.!!$R3 1543
6 TraesCS5A01G527300 chr4B 648911745 648915944 4199 True 573.533333 1790 89.658000 2 3123 6 chr4B.!!$R2 3121
7 TraesCS5A01G527300 chr4B 648572147 648573970 1823 False 508.500000 972 88.709000 690 2516 4 chr4B.!!$F5 1826
8 TraesCS5A01G527300 chr4B 648693816 648695671 1855 True 325.020000 782 85.604400 1060 3117 5 chr4B.!!$R1 2057
9 TraesCS5A01G527300 chr7D 569232583 569233163 580 True 717.000000 717 88.962000 1846 2443 1 chr7D.!!$R1 597
10 TraesCS5A01G527300 chr6D 17447359 17447939 580 True 706.000000 706 88.595000 1846 2443 1 chr6D.!!$R1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
826 2526 0.172127 GTCCTTCCGACCGAGGTAAC 59.828 60.0 0.0 0.0 35.23 2.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2811 5461 0.251354 TGGCATGCCTCACTTCTCTC 59.749 55.0 35.53 6.75 36.94 3.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.067295 AACTCCACTTGCCATCCTCA 58.933 50.000 0.00 0.00 0.00 3.86
42 43 9.621629 TCCTCAACGAACATAATTTACCATAAT 57.378 29.630 0.00 0.00 0.00 1.28
43 44 9.663904 CCTCAACGAACATAATTTACCATAATG 57.336 33.333 0.00 0.00 0.00 1.90
96 97 3.564225 CGTTTGCTGGATATTAGGGTTCC 59.436 47.826 0.00 0.00 0.00 3.62
194 195 1.167851 AACCATCTTCCACATGCACG 58.832 50.000 0.00 0.00 0.00 5.34
204 206 3.422303 CATGCACGTCCACCCACG 61.422 66.667 0.00 0.00 45.65 4.94
226 228 5.172934 CGTATTTGTAGTAGGTCTTGCCAA 58.827 41.667 0.00 0.00 40.61 4.52
238 242 2.485814 GTCTTGCCAATTGACCTGACTC 59.514 50.000 7.12 0.00 0.00 3.36
253 258 1.412710 TGACTCTGTGTTGTGTCTCCC 59.587 52.381 0.00 0.00 33.27 4.30
277 282 1.597742 GGACCCGACATGGATCAATG 58.402 55.000 8.65 8.65 42.00 2.82
324 329 3.658079 CGTACGTAGATATGCAACGACAG 59.342 47.826 14.34 1.84 30.84 3.51
361 366 1.139520 GCTCGCGGCCAAATTTCAT 59.860 52.632 6.13 0.00 34.27 2.57
401 406 2.305928 CAAACACACACCCTTCCATCA 58.694 47.619 0.00 0.00 0.00 3.07
434 439 5.711976 CAGATAAACCCATACCCATTGATCC 59.288 44.000 0.00 0.00 0.00 3.36
449 454 5.278808 CCATTGATCCACATCTAAATGCCAG 60.279 44.000 0.00 0.00 36.26 4.85
454 459 2.372264 CACATCTAAATGCCAGGTGCT 58.628 47.619 0.00 0.00 42.00 4.40
455 460 2.756760 CACATCTAAATGCCAGGTGCTT 59.243 45.455 0.00 0.00 42.00 3.91
456 461 3.019564 ACATCTAAATGCCAGGTGCTTC 58.980 45.455 0.00 0.00 42.00 3.86
457 462 3.285484 CATCTAAATGCCAGGTGCTTCT 58.715 45.455 0.00 0.00 42.00 2.85
458 463 3.439857 TCTAAATGCCAGGTGCTTCTT 57.560 42.857 0.00 0.00 42.00 2.52
460 465 3.758554 TCTAAATGCCAGGTGCTTCTTTC 59.241 43.478 0.00 0.00 42.00 2.62
461 466 1.999648 AATGCCAGGTGCTTCTTTCA 58.000 45.000 0.00 0.00 42.00 2.69
463 468 1.250328 TGCCAGGTGCTTCTTTCATG 58.750 50.000 0.00 0.00 42.00 3.07
464 469 1.202915 TGCCAGGTGCTTCTTTCATGA 60.203 47.619 0.00 0.00 42.00 3.07
465 470 1.471684 GCCAGGTGCTTCTTTCATGAG 59.528 52.381 0.00 0.00 36.87 2.90
466 471 2.877300 GCCAGGTGCTTCTTTCATGAGA 60.877 50.000 0.00 0.00 36.87 3.27
467 472 3.415212 CCAGGTGCTTCTTTCATGAGAA 58.585 45.455 0.00 0.00 34.63 2.87
468 473 3.822735 CCAGGTGCTTCTTTCATGAGAAA 59.177 43.478 0.00 0.00 41.26 2.52
469 474 4.320788 CCAGGTGCTTCTTTCATGAGAAAC 60.321 45.833 0.00 0.00 38.76 2.78
470 475 4.518211 CAGGTGCTTCTTTCATGAGAAACT 59.482 41.667 0.00 0.00 38.76 2.66
471 476 4.518211 AGGTGCTTCTTTCATGAGAAACTG 59.482 41.667 0.00 0.00 38.76 3.16
472 477 4.320788 GGTGCTTCTTTCATGAGAAACTGG 60.321 45.833 0.00 0.00 38.76 4.00
473 478 4.276926 GTGCTTCTTTCATGAGAAACTGGT 59.723 41.667 0.00 0.00 38.76 4.00
474 479 4.276678 TGCTTCTTTCATGAGAAACTGGTG 59.723 41.667 0.00 0.00 38.76 4.17
475 480 4.791974 CTTCTTTCATGAGAAACTGGTGC 58.208 43.478 0.00 0.00 38.76 5.01
476 481 3.819368 TCTTTCATGAGAAACTGGTGCA 58.181 40.909 0.00 0.00 38.76 4.57
477 482 4.206375 TCTTTCATGAGAAACTGGTGCAA 58.794 39.130 0.00 0.00 38.76 4.08
478 483 4.828939 TCTTTCATGAGAAACTGGTGCAAT 59.171 37.500 0.00 0.00 38.76 3.56
479 484 4.508461 TTCATGAGAAACTGGTGCAATG 57.492 40.909 0.00 0.00 0.00 2.82
480 485 2.821378 TCATGAGAAACTGGTGCAATGG 59.179 45.455 0.00 0.00 0.00 3.16
481 486 1.619654 TGAGAAACTGGTGCAATGGG 58.380 50.000 0.00 0.00 0.00 4.00
482 487 0.244721 GAGAAACTGGTGCAATGGGC 59.755 55.000 0.00 0.00 45.13 5.36
483 488 1.187567 AGAAACTGGTGCAATGGGCC 61.188 55.000 0.00 0.00 43.89 5.80
521 526 0.534877 TTTCGGCCGATGGATCCATG 60.535 55.000 32.05 21.45 36.70 3.66
524 538 2.674380 GCCGATGGATCCATGCCC 60.674 66.667 32.05 16.23 36.70 5.36
525 539 2.838360 CCGATGGATCCATGCCCA 59.162 61.111 32.05 0.54 36.70 5.36
526 540 1.303074 CCGATGGATCCATGCCCAG 60.303 63.158 32.05 15.89 36.70 4.45
528 542 1.605738 GATGGATCCATGCCCAGCC 60.606 63.158 32.05 11.64 36.70 4.85
529 543 2.077842 GATGGATCCATGCCCAGCCT 62.078 60.000 32.05 5.02 36.70 4.58
530 544 2.203451 GGATCCATGCCCAGCCTG 60.203 66.667 6.95 0.00 0.00 4.85
531 545 2.910994 GATCCATGCCCAGCCTGC 60.911 66.667 0.00 0.00 0.00 4.85
535 610 3.766691 CATGCCCAGCCTGCAACC 61.767 66.667 0.00 0.00 42.92 3.77
542 617 0.249573 CCAGCCTGCAACCAACAAAG 60.250 55.000 0.00 0.00 0.00 2.77
547 622 4.158394 CAGCCTGCAACCAACAAAGTATAT 59.842 41.667 0.00 0.00 0.00 0.86
549 624 5.949354 AGCCTGCAACCAACAAAGTATATTA 59.051 36.000 0.00 0.00 0.00 0.98
589 664 8.017373 CGATACAAAGTATATTGCTGGATTTGG 58.983 37.037 0.00 0.00 33.52 3.28
608 683 5.903198 TTGGATTTGAAAAGGTTTCCCAT 57.097 34.783 0.00 0.00 0.00 4.00
609 684 7.380423 TTTGGATTTGAAAAGGTTTCCCATA 57.620 32.000 0.00 0.00 0.00 2.74
648 723 9.515020 TTTTGACACATAGTTGACATTTTCTTC 57.485 29.630 0.00 0.00 0.00 2.87
725 2425 0.883833 TACCTGGACGGAGAAACGAC 59.116 55.000 0.00 0.00 37.61 4.34
737 2437 1.390123 AGAAACGACGCGATGAATGTG 59.610 47.619 15.93 0.00 0.00 3.21
779 2479 2.047655 CGGAAAGTAGCGGCACCA 60.048 61.111 1.45 0.00 0.00 4.17
780 2480 2.388232 CGGAAAGTAGCGGCACCAC 61.388 63.158 1.45 0.00 0.00 4.16
781 2481 2.038837 GGAAAGTAGCGGCACCACC 61.039 63.158 1.45 0.00 0.00 4.61
826 2526 0.172127 GTCCTTCCGACCGAGGTAAC 59.828 60.000 0.00 0.00 35.23 2.50
883 2584 7.751768 ATCATCGGGGAGAAGAATTAAATTC 57.248 36.000 0.00 0.00 39.56 2.17
884 2585 6.658849 TCATCGGGGAGAAGAATTAAATTCA 58.341 36.000 0.00 0.00 41.71 2.57
885 2586 7.116075 TCATCGGGGAGAAGAATTAAATTCAA 58.884 34.615 0.00 0.00 41.71 2.69
886 2587 7.779798 TCATCGGGGAGAAGAATTAAATTCAAT 59.220 33.333 0.00 0.00 41.71 2.57
887 2588 7.954666 TCGGGGAGAAGAATTAAATTCAATT 57.045 32.000 0.00 0.00 41.71 2.32
888 2589 8.361169 TCGGGGAGAAGAATTAAATTCAATTT 57.639 30.769 0.02 0.02 41.71 1.82
889 2590 9.469097 TCGGGGAGAAGAATTAAATTCAATTTA 57.531 29.630 0.00 0.00 41.71 1.40
890 2591 9.736023 CGGGGAGAAGAATTAAATTCAATTTAG 57.264 33.333 2.84 0.00 41.71 1.85
891 2592 9.534565 GGGGAGAAGAATTAAATTCAATTTAGC 57.465 33.333 2.84 0.00 41.71 3.09
967 2668 3.305813 CGAGCTTTATATAACTCGGCCCA 60.306 47.826 20.04 0.00 46.20 5.36
988 2690 1.379527 CGCCATTAACTTCCTCACCC 58.620 55.000 0.00 0.00 0.00 4.61
992 2694 0.255033 ATTAACTTCCTCACCCCCGC 59.745 55.000 0.00 0.00 0.00 6.13
1529 3296 1.066143 ACCTTCGCCACCAACTATCTG 60.066 52.381 0.00 0.00 0.00 2.90
1749 3847 1.281899 GACTGACAGTAAGCGCCATC 58.718 55.000 8.41 0.00 0.00 3.51
1750 3848 0.108138 ACTGACAGTAAGCGCCATCC 60.108 55.000 6.24 0.00 0.00 3.51
1751 3849 1.148157 CTGACAGTAAGCGCCATCCG 61.148 60.000 2.29 0.00 40.75 4.18
1765 3863 2.949644 GCCATCCGCCATTAGTTAGTTT 59.050 45.455 0.00 0.00 0.00 2.66
1766 3864 3.380320 GCCATCCGCCATTAGTTAGTTTT 59.620 43.478 0.00 0.00 0.00 2.43
1767 3865 4.577283 GCCATCCGCCATTAGTTAGTTTTA 59.423 41.667 0.00 0.00 0.00 1.52
1902 4012 2.972505 CCAAGCTCGCCAACGTGT 60.973 61.111 0.00 0.00 41.18 4.49
2062 4266 0.250467 TCCAAGCTGCTCAAGACCAC 60.250 55.000 1.00 0.00 0.00 4.16
2066 4270 2.352805 CTGCTCAAGACCACCCCC 59.647 66.667 0.00 0.00 0.00 5.40
2083 4295 1.496429 CCCCCAGGTGATTAATCTGCT 59.504 52.381 16.24 0.00 0.00 4.24
2086 4298 2.422519 CCCAGGTGATTAATCTGCTGCT 60.423 50.000 16.24 1.56 0.00 4.24
2091 4303 4.102838 AGGTGATTAATCTGCTGCTCTCAT 59.897 41.667 16.24 0.00 0.00 2.90
2095 4343 4.750021 TTAATCTGCTGCTCTCATCTGT 57.250 40.909 0.00 0.00 0.00 3.41
2112 4370 7.015001 TCTCATCTGTGTTATCATATGCAGACT 59.985 37.037 9.69 0.39 36.07 3.24
2113 4371 6.927381 TCATCTGTGTTATCATATGCAGACTG 59.073 38.462 9.69 0.00 36.07 3.51
2114 4372 5.052481 TCTGTGTTATCATATGCAGACTGC 58.948 41.667 20.86 20.86 45.29 4.40
2245 4558 4.135153 TGCCCTCTCTTCTCGCGC 62.135 66.667 0.00 0.00 0.00 6.86
2411 4757 1.596477 GGACATGATCAGCGGCTCC 60.596 63.158 0.00 0.00 0.00 4.70
2431 4800 2.417719 CAGTAGTCAACAGGGAAGCAC 58.582 52.381 0.00 0.00 0.00 4.40
2432 4801 1.000955 AGTAGTCAACAGGGAAGCACG 59.999 52.381 0.00 0.00 0.00 5.34
2438 4809 0.035458 AACAGGGAAGCACGAAGGAG 59.965 55.000 0.00 0.00 0.00 3.69
2464 4862 2.621055 ACATCTGAGCATCCGACTAGTC 59.379 50.000 13.18 13.18 28.86 2.59
2539 4940 3.631686 GCCAGGATGTAACATGCACATAA 59.368 43.478 12.23 0.00 36.76 1.90
2600 5006 2.285220 CGTGTTTGTCACAGAGTGAAGG 59.715 50.000 0.82 0.00 44.49 3.46
2646 5052 5.265191 ACTGTGAGATCCATGTGTACTACT 58.735 41.667 0.00 0.00 0.00 2.57
2648 5054 6.211584 ACTGTGAGATCCATGTGTACTACTTT 59.788 38.462 0.00 0.00 0.00 2.66
2650 5056 6.043411 GTGAGATCCATGTGTACTACTTTCC 58.957 44.000 0.00 0.00 0.00 3.13
2699 5173 6.055588 GGTTGGTGACATGTAAGCATATACT 58.944 40.000 15.81 0.00 42.32 2.12
2700 5174 6.202954 GGTTGGTGACATGTAAGCATATACTC 59.797 42.308 15.81 3.03 42.32 2.59
2701 5175 5.853936 TGGTGACATGTAAGCATATACTCC 58.146 41.667 11.19 0.79 33.30 3.85
2702 5176 5.602561 TGGTGACATGTAAGCATATACTCCT 59.397 40.000 11.19 0.00 33.30 3.69
2703 5177 6.780522 TGGTGACATGTAAGCATATACTCCTA 59.219 38.462 11.19 0.00 33.30 2.94
2704 5178 7.091443 GGTGACATGTAAGCATATACTCCTAC 58.909 42.308 7.56 0.00 33.30 3.18
2705 5179 7.255836 GGTGACATGTAAGCATATACTCCTACA 60.256 40.741 7.56 0.00 33.30 2.74
2706 5180 8.307483 GTGACATGTAAGCATATACTCCTACAT 58.693 37.037 0.00 0.00 33.30 2.29
2707 5181 9.528489 TGACATGTAAGCATATACTCCTACATA 57.472 33.333 0.00 0.00 33.30 2.29
2708 5182 9.790389 GACATGTAAGCATATACTCCTACATAC 57.210 37.037 0.00 0.00 33.30 2.39
2764 5403 4.027674 TGCAAGCCAAACTCCTGTATTA 57.972 40.909 0.00 0.00 0.00 0.98
2784 5434 8.194769 TGTATTATGTCAGTACACACATACAGG 58.805 37.037 13.69 0.00 38.78 4.00
2810 5460 1.394917 CGTAGCTTGGTCTGTTCATGC 59.605 52.381 0.00 0.00 36.10 4.06
2811 5461 1.394917 GTAGCTTGGTCTGTTCATGCG 59.605 52.381 0.00 0.00 39.36 4.73
2823 5473 2.266554 GTTCATGCGAGAGAAGTGAGG 58.733 52.381 0.00 0.00 0.00 3.86
2880 5541 8.454894 TGCAACATCTTCTATCTATCGTATCTC 58.545 37.037 0.00 0.00 0.00 2.75
2914 5575 1.743394 GCTGGTACAATACAAGGTGGC 59.257 52.381 0.00 0.00 38.70 5.01
2989 5666 1.135774 TCTCGTTCGATTGGACTCGTG 60.136 52.381 0.00 0.00 39.62 4.35
2993 5670 0.109458 TTCGATTGGACTCGTGGACG 60.109 55.000 0.00 0.00 39.62 4.79
2999 5676 4.047059 GACTCGTGGACGGGCGAA 62.047 66.667 0.00 0.00 45.27 4.70
3001 5678 2.125673 CTCGTGGACGGGCGAATT 60.126 61.111 0.00 0.00 40.29 2.17
3045 5722 3.257561 GCACGCGACGCATCATCT 61.258 61.111 21.35 0.00 0.00 2.90
3049 5726 1.654440 CGCGACGCATCATCTACGT 60.654 57.895 21.35 0.00 43.83 3.57
3135 5820 2.936032 AGGGGTGTCCTTGGGAGC 60.936 66.667 0.00 0.00 45.47 4.70
3136 5821 3.256960 GGGGTGTCCTTGGGAGCA 61.257 66.667 0.00 0.00 29.39 4.26
3137 5822 2.034221 GGGTGTCCTTGGGAGCAC 59.966 66.667 9.26 9.26 35.00 4.40
3138 5823 2.829384 GGGTGTCCTTGGGAGCACA 61.829 63.158 15.46 0.00 36.33 4.57
3139 5824 1.302832 GGTGTCCTTGGGAGCACAG 60.303 63.158 15.46 0.00 36.33 3.66
3140 5825 1.968540 GTGTCCTTGGGAGCACAGC 60.969 63.158 11.47 0.00 35.45 4.40
3141 5826 2.743928 GTCCTTGGGAGCACAGCG 60.744 66.667 0.00 0.00 29.39 5.18
3142 5827 3.241530 TCCTTGGGAGCACAGCGT 61.242 61.111 0.00 0.00 0.00 5.07
3143 5828 2.281761 CCTTGGGAGCACAGCGTT 60.282 61.111 0.00 0.00 0.00 4.84
3144 5829 2.620112 CCTTGGGAGCACAGCGTTG 61.620 63.158 0.00 0.00 0.00 4.10
3145 5830 3.259425 CTTGGGAGCACAGCGTTGC 62.259 63.158 0.00 4.53 43.34 4.17
3146 5831 4.560743 TGGGAGCACAGCGTTGCA 62.561 61.111 14.10 0.00 45.62 4.08
3147 5832 3.730761 GGGAGCACAGCGTTGCAG 61.731 66.667 14.10 0.00 45.62 4.41
3148 5833 2.974698 GGAGCACAGCGTTGCAGT 60.975 61.111 14.10 0.00 45.62 4.40
3149 5834 2.250485 GAGCACAGCGTTGCAGTG 59.750 61.111 14.10 9.60 46.31 3.66
3152 5837 4.332637 CACAGCGTTGCAGTGCCC 62.333 66.667 13.72 1.90 39.00 5.36
3179 5864 6.992063 CACCAGTGCTCTTTATATTTGACT 57.008 37.500 0.00 0.00 0.00 3.41
3180 5865 7.383102 CACCAGTGCTCTTTATATTTGACTT 57.617 36.000 0.00 0.00 0.00 3.01
3181 5866 7.820648 CACCAGTGCTCTTTATATTTGACTTT 58.179 34.615 0.00 0.00 0.00 2.66
3182 5867 8.299570 CACCAGTGCTCTTTATATTTGACTTTT 58.700 33.333 0.00 0.00 0.00 2.27
3183 5868 8.860088 ACCAGTGCTCTTTATATTTGACTTTTT 58.140 29.630 0.00 0.00 0.00 1.94
3235 5920 9.452287 AAAAATGTGAAATTATTTCCCAGGATG 57.548 29.630 14.22 0.00 38.90 3.51
3236 5921 5.596836 TGTGAAATTATTTCCCAGGATGC 57.403 39.130 14.22 0.00 38.90 3.91
3237 5922 5.022122 TGTGAAATTATTTCCCAGGATGCA 58.978 37.500 14.22 0.00 38.90 3.96
3238 5923 5.662208 TGTGAAATTATTTCCCAGGATGCAT 59.338 36.000 14.22 0.00 38.90 3.96
3239 5924 6.838090 TGTGAAATTATTTCCCAGGATGCATA 59.162 34.615 14.22 0.00 38.90 3.14
3240 5925 7.510001 TGTGAAATTATTTCCCAGGATGCATAT 59.490 33.333 14.22 0.00 38.90 1.78
3241 5926 9.023962 GTGAAATTATTTCCCAGGATGCATATA 57.976 33.333 14.22 0.00 38.90 0.86
3242 5927 9.772605 TGAAATTATTTCCCAGGATGCATATAT 57.227 29.630 14.22 0.00 38.90 0.86
3248 5933 8.757982 ATTTCCCAGGATGCATATATACATTC 57.242 34.615 0.00 0.00 31.97 2.67
3249 5934 7.515004 TTCCCAGGATGCATATATACATTCT 57.485 36.000 0.00 1.26 32.05 2.40
3250 5935 6.892485 TCCCAGGATGCATATATACATTCTG 58.108 40.000 21.06 21.06 45.70 3.02
3257 5942 9.277783 GGATGCATATATACATTCTGAATACCC 57.722 37.037 0.00 0.00 0.00 3.69
3258 5943 8.893219 ATGCATATATACATTCTGAATACCCG 57.107 34.615 0.00 0.00 0.00 5.28
3259 5944 7.847096 TGCATATATACATTCTGAATACCCGT 58.153 34.615 1.98 0.00 0.00 5.28
3260 5945 8.318412 TGCATATATACATTCTGAATACCCGTT 58.682 33.333 1.98 0.00 0.00 4.44
3261 5946 8.604035 GCATATATACATTCTGAATACCCGTTG 58.396 37.037 1.98 0.00 0.00 4.10
3262 5947 8.604035 CATATATACATTCTGAATACCCGTTGC 58.396 37.037 1.98 0.00 0.00 4.17
3263 5948 3.066291 ACATTCTGAATACCCGTTGCA 57.934 42.857 1.98 0.00 0.00 4.08
3264 5949 3.417101 ACATTCTGAATACCCGTTGCAA 58.583 40.909 1.98 0.00 0.00 4.08
3265 5950 3.440173 ACATTCTGAATACCCGTTGCAAG 59.560 43.478 0.00 0.00 0.00 4.01
3266 5951 2.851263 TCTGAATACCCGTTGCAAGT 57.149 45.000 0.00 0.00 0.00 3.16
3267 5952 3.134574 TCTGAATACCCGTTGCAAGTT 57.865 42.857 0.00 0.00 0.00 2.66
3268 5953 3.482436 TCTGAATACCCGTTGCAAGTTT 58.518 40.909 0.00 0.00 0.00 2.66
3269 5954 3.500680 TCTGAATACCCGTTGCAAGTTTC 59.499 43.478 0.00 2.96 0.00 2.78
3270 5955 2.224549 TGAATACCCGTTGCAAGTTTCG 59.775 45.455 0.00 0.00 0.00 3.46
3271 5956 1.161843 ATACCCGTTGCAAGTTTCGG 58.838 50.000 16.90 16.90 42.22 4.30
3272 5957 0.179051 TACCCGTTGCAAGTTTCGGT 60.179 50.000 20.70 14.10 41.17 4.69
3273 5958 0.179051 ACCCGTTGCAAGTTTCGGTA 60.179 50.000 20.70 0.00 41.17 4.02
3274 5959 0.236449 CCCGTTGCAAGTTTCGGTAC 59.764 55.000 20.70 0.00 41.17 3.34
3275 5960 0.938713 CCGTTGCAAGTTTCGGTACA 59.061 50.000 15.90 0.00 38.45 2.90
3276 5961 1.331138 CCGTTGCAAGTTTCGGTACAA 59.669 47.619 15.90 0.00 38.45 2.41
3277 5962 2.223294 CCGTTGCAAGTTTCGGTACAAA 60.223 45.455 15.90 0.00 38.45 2.83
3278 5963 3.549221 CCGTTGCAAGTTTCGGTACAAAT 60.549 43.478 15.90 0.00 38.45 2.32
3279 5964 3.662186 CGTTGCAAGTTTCGGTACAAATC 59.338 43.478 0.00 0.00 0.00 2.17
3280 5965 4.553938 CGTTGCAAGTTTCGGTACAAATCT 60.554 41.667 0.00 0.00 0.00 2.40
3281 5966 4.742438 TGCAAGTTTCGGTACAAATCTC 57.258 40.909 0.00 0.00 0.00 2.75
3282 5967 3.185594 TGCAAGTTTCGGTACAAATCTCG 59.814 43.478 0.00 0.00 0.00 4.04
3283 5968 3.185797 GCAAGTTTCGGTACAAATCTCGT 59.814 43.478 0.00 0.00 0.00 4.18
3284 5969 4.319261 GCAAGTTTCGGTACAAATCTCGTT 60.319 41.667 0.00 0.00 0.00 3.85
3285 5970 5.744490 CAAGTTTCGGTACAAATCTCGTTT 58.256 37.500 0.00 0.00 0.00 3.60
3286 5971 5.996669 AGTTTCGGTACAAATCTCGTTTT 57.003 34.783 0.00 0.00 0.00 2.43
3287 5972 5.744490 AGTTTCGGTACAAATCTCGTTTTG 58.256 37.500 0.00 6.67 41.37 2.44
3289 5974 5.738118 TTCGGTACAAATCTCGTTTTGTT 57.262 34.783 15.27 4.85 45.14 2.83
3290 5975 5.738118 TCGGTACAAATCTCGTTTTGTTT 57.262 34.783 15.27 0.45 45.14 2.83
3291 5976 6.121613 TCGGTACAAATCTCGTTTTGTTTT 57.878 33.333 15.27 0.00 45.14 2.43
3292 5977 5.966503 TCGGTACAAATCTCGTTTTGTTTTG 59.033 36.000 15.27 9.33 45.14 2.44
3293 5978 5.172411 CGGTACAAATCTCGTTTTGTTTTGG 59.828 40.000 15.27 4.41 45.14 3.28
3294 5979 6.267070 GGTACAAATCTCGTTTTGTTTTGGA 58.733 36.000 15.27 3.42 45.14 3.53
3295 5980 6.197655 GGTACAAATCTCGTTTTGTTTTGGAC 59.802 38.462 15.27 11.82 45.14 4.02
3296 5981 5.961272 ACAAATCTCGTTTTGTTTTGGACT 58.039 33.333 7.67 0.00 45.14 3.85
3297 5982 7.090953 ACAAATCTCGTTTTGTTTTGGACTA 57.909 32.000 7.67 0.00 45.14 2.59
3298 5983 7.712797 ACAAATCTCGTTTTGTTTTGGACTAT 58.287 30.769 7.67 0.00 45.14 2.12
3299 5984 8.842280 ACAAATCTCGTTTTGTTTTGGACTATA 58.158 29.630 7.67 0.00 45.14 1.31
3300 5985 9.329913 CAAATCTCGTTTTGTTTTGGACTATAG 57.670 33.333 0.00 0.00 32.99 1.31
3301 5986 8.842358 AATCTCGTTTTGTTTTGGACTATAGA 57.158 30.769 6.78 0.00 0.00 1.98
3302 5987 8.842358 ATCTCGTTTTGTTTTGGACTATAGAA 57.158 30.769 6.78 0.00 0.00 2.10
3303 5988 8.665643 TCTCGTTTTGTTTTGGACTATAGAAA 57.334 30.769 6.78 0.00 0.00 2.52
3304 5989 9.111613 TCTCGTTTTGTTTTGGACTATAGAAAA 57.888 29.630 6.78 0.26 0.00 2.29
3305 5990 9.724839 CTCGTTTTGTTTTGGACTATAGAAAAA 57.275 29.630 6.78 7.55 0.00 1.94
3357 6042 6.409524 AAAAAGATGCCATTTCTGTCAGAA 57.590 33.333 11.36 11.36 31.28 3.02
3358 6043 6.409524 AAAAGATGCCATTTCTGTCAGAAA 57.590 33.333 26.17 26.17 46.89 2.52
3402 6087 9.807921 TCCCAAAATACAAAGTATTTCTTCTCT 57.192 29.630 13.64 0.00 35.03 3.10
3418 6103 7.648039 TTCTTCTCTAGATTTCTACCAGTCC 57.352 40.000 0.00 0.00 31.54 3.85
3419 6104 6.975949 TCTTCTCTAGATTTCTACCAGTCCT 58.024 40.000 0.00 0.00 0.00 3.85
3420 6105 7.415086 TCTTCTCTAGATTTCTACCAGTCCTT 58.585 38.462 0.00 0.00 0.00 3.36
3421 6106 8.558312 TCTTCTCTAGATTTCTACCAGTCCTTA 58.442 37.037 0.00 0.00 0.00 2.69
3422 6107 8.754991 TTCTCTAGATTTCTACCAGTCCTTAG 57.245 38.462 0.00 0.00 0.00 2.18
3423 6108 7.291566 TCTCTAGATTTCTACCAGTCCTTAGG 58.708 42.308 0.00 0.00 0.00 2.69
3424 6109 7.129038 TCTCTAGATTTCTACCAGTCCTTAGGA 59.871 40.741 0.00 0.00 0.00 2.94
3425 6110 7.649715 TCTAGATTTCTACCAGTCCTTAGGAA 58.350 38.462 0.98 0.00 31.38 3.36
3426 6111 8.290277 TCTAGATTTCTACCAGTCCTTAGGAAT 58.710 37.037 0.98 0.00 31.38 3.01
3427 6112 9.589461 CTAGATTTCTACCAGTCCTTAGGAATA 57.411 37.037 0.98 0.00 31.38 1.75
3429 6114 8.875168 AGATTTCTACCAGTCCTTAGGAATATG 58.125 37.037 0.98 2.43 31.38 1.78
3430 6115 7.989947 TTTCTACCAGTCCTTAGGAATATGT 57.010 36.000 0.98 5.44 31.38 2.29
3431 6116 6.978674 TCTACCAGTCCTTAGGAATATGTG 57.021 41.667 0.98 0.00 31.38 3.21
3432 6117 6.441222 TCTACCAGTCCTTAGGAATATGTGT 58.559 40.000 0.98 5.82 31.38 3.72
3433 6118 7.589081 TCTACCAGTCCTTAGGAATATGTGTA 58.411 38.462 0.98 6.56 31.38 2.90
3434 6119 6.481434 ACCAGTCCTTAGGAATATGTGTAC 57.519 41.667 0.98 0.00 31.38 2.90
3435 6120 5.068723 ACCAGTCCTTAGGAATATGTGTACG 59.931 44.000 0.98 0.00 31.38 3.67
3436 6121 5.068723 CCAGTCCTTAGGAATATGTGTACGT 59.931 44.000 0.98 0.00 31.38 3.57
3437 6122 6.263842 CCAGTCCTTAGGAATATGTGTACGTA 59.736 42.308 0.98 0.00 31.38 3.57
3438 6123 7.039923 CCAGTCCTTAGGAATATGTGTACGTAT 60.040 40.741 0.98 0.00 31.38 3.06
3439 6124 8.358148 CAGTCCTTAGGAATATGTGTACGTATT 58.642 37.037 0.98 8.75 39.88 1.89
3440 6125 8.574737 AGTCCTTAGGAATATGTGTACGTATTC 58.425 37.037 20.84 20.84 46.49 1.75
3454 6139 9.814507 TGTGTACGTATTCACATATTTGTTTTC 57.185 29.630 13.33 0.00 39.23 2.29
3455 6140 9.814507 GTGTACGTATTCACATATTTGTTTTCA 57.185 29.630 10.52 0.00 32.34 2.69
3482 6167 4.630894 TTTTGAGCATCGAAAGTGTGTT 57.369 36.364 0.00 0.00 43.30 3.32
3483 6168 4.630894 TTTGAGCATCGAAAGTGTGTTT 57.369 36.364 0.00 0.00 35.03 2.83
3484 6169 4.630894 TTGAGCATCGAAAGTGTGTTTT 57.369 36.364 0.00 0.00 38.61 2.43
3485 6170 4.630894 TGAGCATCGAAAGTGTGTTTTT 57.369 36.364 0.00 0.00 38.61 1.94
3486 6171 4.597079 TGAGCATCGAAAGTGTGTTTTTC 58.403 39.130 0.00 0.00 38.61 2.29
3487 6172 4.095632 TGAGCATCGAAAGTGTGTTTTTCA 59.904 37.500 0.00 0.00 38.61 2.69
3488 6173 4.992688 AGCATCGAAAGTGTGTTTTTCAA 58.007 34.783 0.00 0.00 34.90 2.69
3489 6174 5.406649 AGCATCGAAAGTGTGTTTTTCAAA 58.593 33.333 0.00 0.00 34.90 2.69
3490 6175 5.866633 AGCATCGAAAGTGTGTTTTTCAAAA 59.133 32.000 0.00 0.00 34.90 2.44
3491 6176 6.367422 AGCATCGAAAGTGTGTTTTTCAAAAA 59.633 30.769 0.00 0.00 34.90 1.94
3514 6199 9.558396 AAAAATTCAAATATCAAAAGCAGTGGA 57.442 25.926 0.00 0.00 0.00 4.02
3515 6200 8.767478 AAATTCAAATATCAAAAGCAGTGGAG 57.233 30.769 0.00 0.00 0.00 3.86
3516 6201 5.314923 TCAAATATCAAAAGCAGTGGAGC 57.685 39.130 0.00 0.00 0.00 4.70
3518 6203 5.124457 TCAAATATCAAAAGCAGTGGAGCTC 59.876 40.000 4.71 4.71 45.89 4.09
3519 6204 1.446907 ATCAAAAGCAGTGGAGCTCG 58.553 50.000 7.83 0.00 45.89 5.03
3520 6205 0.603707 TCAAAAGCAGTGGAGCTCGG 60.604 55.000 7.83 0.00 45.89 4.63
3521 6206 1.968540 AAAAGCAGTGGAGCTCGGC 60.969 57.895 7.83 8.80 45.89 5.54
3522 6207 3.909086 AAAGCAGTGGAGCTCGGCC 62.909 63.158 7.83 0.00 45.89 6.13
3524 6209 4.828925 GCAGTGGAGCTCGGCCTC 62.829 72.222 7.83 0.00 0.00 4.70
3525 6210 3.073735 CAGTGGAGCTCGGCCTCT 61.074 66.667 7.83 0.00 32.43 3.69
3526 6211 3.073735 AGTGGAGCTCGGCCTCTG 61.074 66.667 7.83 0.00 32.43 3.35
3527 6212 4.828925 GTGGAGCTCGGCCTCTGC 62.829 72.222 7.83 1.79 32.43 4.26
3529 6214 4.527583 GGAGCTCGGCCTCTGCAG 62.528 72.222 7.63 7.63 40.13 4.41
3537 6222 3.769201 GCCTCTGCAGCCACTTTT 58.231 55.556 9.47 0.00 37.47 2.27
3538 6223 1.583477 GCCTCTGCAGCCACTTTTC 59.417 57.895 9.47 0.00 37.47 2.29
3539 6224 1.871772 CCTCTGCAGCCACTTTTCG 59.128 57.895 9.47 0.00 0.00 3.46
3540 6225 0.886490 CCTCTGCAGCCACTTTTCGT 60.886 55.000 9.47 0.00 0.00 3.85
3541 6226 0.236711 CTCTGCAGCCACTTTTCGTG 59.763 55.000 9.47 0.00 43.41 4.35
3542 6227 0.463654 TCTGCAGCCACTTTTCGTGT 60.464 50.000 9.47 0.00 42.20 4.49
3543 6228 0.040958 CTGCAGCCACTTTTCGTGTC 60.041 55.000 0.00 0.00 42.20 3.67
3544 6229 1.282875 GCAGCCACTTTTCGTGTCC 59.717 57.895 0.00 0.00 42.20 4.02
3545 6230 1.166531 GCAGCCACTTTTCGTGTCCT 61.167 55.000 0.00 0.00 42.20 3.85
3546 6231 1.308998 CAGCCACTTTTCGTGTCCTT 58.691 50.000 0.00 0.00 42.20 3.36
3547 6232 1.002468 CAGCCACTTTTCGTGTCCTTG 60.002 52.381 0.00 0.00 42.20 3.61
3548 6233 0.310854 GCCACTTTTCGTGTCCTTGG 59.689 55.000 0.00 0.00 42.20 3.61
3549 6234 0.310854 CCACTTTTCGTGTCCTTGGC 59.689 55.000 0.00 0.00 42.20 4.52
3550 6235 0.310854 CACTTTTCGTGTCCTTGGCC 59.689 55.000 0.00 0.00 38.84 5.36
3551 6236 1.164041 ACTTTTCGTGTCCTTGGCCG 61.164 55.000 0.00 0.00 0.00 6.13
3552 6237 1.153127 TTTTCGTGTCCTTGGCCGT 60.153 52.632 0.00 0.00 0.00 5.68
3553 6238 0.748729 TTTTCGTGTCCTTGGCCGTT 60.749 50.000 0.00 0.00 0.00 4.44
3554 6239 0.748729 TTTCGTGTCCTTGGCCGTTT 60.749 50.000 0.00 0.00 0.00 3.60
3555 6240 0.748729 TTCGTGTCCTTGGCCGTTTT 60.749 50.000 0.00 0.00 0.00 2.43
3556 6241 1.161563 TCGTGTCCTTGGCCGTTTTC 61.162 55.000 0.00 0.00 0.00 2.29
3557 6242 1.658114 GTGTCCTTGGCCGTTTTCC 59.342 57.895 0.00 0.00 0.00 3.13
3558 6243 1.529713 TGTCCTTGGCCGTTTTCCC 60.530 57.895 0.00 0.00 0.00 3.97
3559 6244 1.228459 GTCCTTGGCCGTTTTCCCT 60.228 57.895 0.00 0.00 0.00 4.20
3560 6245 0.826256 GTCCTTGGCCGTTTTCCCTT 60.826 55.000 0.00 0.00 0.00 3.95
3561 6246 0.825840 TCCTTGGCCGTTTTCCCTTG 60.826 55.000 0.00 0.00 0.00 3.61
3562 6247 0.825840 CCTTGGCCGTTTTCCCTTGA 60.826 55.000 0.00 0.00 0.00 3.02
3563 6248 1.036707 CTTGGCCGTTTTCCCTTGAA 58.963 50.000 0.00 0.00 0.00 2.69
3564 6249 0.747852 TTGGCCGTTTTCCCTTGAAC 59.252 50.000 0.00 0.00 0.00 3.18
3565 6250 0.395862 TGGCCGTTTTCCCTTGAACA 60.396 50.000 0.00 0.00 0.00 3.18
3566 6251 0.313987 GGCCGTTTTCCCTTGAACAG 59.686 55.000 0.00 0.00 0.00 3.16
3567 6252 0.313987 GCCGTTTTCCCTTGAACAGG 59.686 55.000 0.00 0.00 43.49 4.00
3574 6259 2.437897 CCTTGAACAGGGCTGGCT 59.562 61.111 0.00 0.00 39.39 4.75
3575 6260 1.228675 CCTTGAACAGGGCTGGCTT 60.229 57.895 0.00 0.00 39.39 4.35
3576 6261 1.530013 CCTTGAACAGGGCTGGCTTG 61.530 60.000 11.81 11.81 39.39 4.01
3577 6262 1.530013 CTTGAACAGGGCTGGCTTGG 61.530 60.000 17.31 2.42 34.19 3.61
3578 6263 2.005606 TTGAACAGGGCTGGCTTGGA 62.006 55.000 17.31 0.00 34.19 3.53
3579 6264 1.676967 GAACAGGGCTGGCTTGGAG 60.677 63.158 17.31 0.00 34.19 3.86
3580 6265 3.215587 AACAGGGCTGGCTTGGAGG 62.216 63.158 17.31 0.00 34.19 4.30
3581 6266 4.437587 CAGGGCTGGCTTGGAGGG 62.438 72.222 5.37 0.00 0.00 4.30
3583 6268 4.432741 GGGCTGGCTTGGAGGGTC 62.433 72.222 0.00 0.00 0.00 4.46
3584 6269 4.432741 GGCTGGCTTGGAGGGTCC 62.433 72.222 0.00 0.00 36.96 4.46
3585 6270 4.432741 GCTGGCTTGGAGGGTCCC 62.433 72.222 0.00 0.00 35.03 4.46
3586 6271 2.612115 CTGGCTTGGAGGGTCCCT 60.612 66.667 11.38 11.38 35.03 4.20
3587 6272 2.121506 TGGCTTGGAGGGTCCCTT 60.122 61.111 13.13 0.00 35.03 3.95
3588 6273 2.203549 CTGGCTTGGAGGGTCCCTTC 62.204 65.000 13.13 11.35 35.03 3.46
3589 6274 2.677848 GCTTGGAGGGTCCCTTCC 59.322 66.667 14.33 15.29 35.03 3.46
3590 6275 1.925972 GCTTGGAGGGTCCCTTCCT 60.926 63.158 14.33 0.00 35.03 3.36
3591 6276 1.501654 GCTTGGAGGGTCCCTTCCTT 61.502 60.000 14.33 0.00 35.03 3.36
3592 6277 1.076438 CTTGGAGGGTCCCTTCCTTT 58.924 55.000 14.33 0.00 35.03 3.11
3593 6278 1.429299 CTTGGAGGGTCCCTTCCTTTT 59.571 52.381 14.33 0.00 35.03 2.27
3594 6279 1.541275 TGGAGGGTCCCTTCCTTTTT 58.459 50.000 14.33 0.00 35.03 1.94
3612 6297 4.771590 TTTTTCTGTGACATGAGATGGC 57.228 40.909 0.00 0.00 39.32 4.40
3613 6298 3.708403 TTTCTGTGACATGAGATGGCT 57.292 42.857 0.00 0.00 39.69 4.75
3614 6299 2.685850 TCTGTGACATGAGATGGCTG 57.314 50.000 0.00 0.00 39.69 4.85
3615 6300 1.015109 CTGTGACATGAGATGGCTGC 58.985 55.000 0.00 0.00 39.69 5.25
3616 6301 0.616891 TGTGACATGAGATGGCTGCT 59.383 50.000 0.00 0.00 39.69 4.24
3617 6302 1.003928 TGTGACATGAGATGGCTGCTT 59.996 47.619 0.00 0.00 39.69 3.91
3618 6303 1.669779 GTGACATGAGATGGCTGCTTC 59.330 52.381 0.00 0.00 39.69 3.86
3619 6304 1.307097 GACATGAGATGGCTGCTTCC 58.693 55.000 0.00 0.00 34.69 3.46
3620 6305 0.917533 ACATGAGATGGCTGCTTCCT 59.082 50.000 0.00 0.00 33.60 3.36
3621 6306 1.309950 CATGAGATGGCTGCTTCCTG 58.690 55.000 0.00 0.00 0.00 3.86
3622 6307 0.917533 ATGAGATGGCTGCTTCCTGT 59.082 50.000 0.00 0.00 0.00 4.00
3623 6308 0.251354 TGAGATGGCTGCTTCCTGTC 59.749 55.000 0.00 0.00 0.00 3.51
3624 6309 0.540923 GAGATGGCTGCTTCCTGTCT 59.459 55.000 0.00 0.00 0.00 3.41
3625 6310 0.540923 AGATGGCTGCTTCCTGTCTC 59.459 55.000 0.00 0.00 0.00 3.36
3626 6311 0.540923 GATGGCTGCTTCCTGTCTCT 59.459 55.000 0.00 0.00 0.00 3.10
3627 6312 0.540923 ATGGCTGCTTCCTGTCTCTC 59.459 55.000 0.00 0.00 0.00 3.20
3628 6313 1.153667 GGCTGCTTCCTGTCTCTCG 60.154 63.158 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.321564 TCGTTGAGGATGGCAAGTGG 60.322 55.000 0.00 0.00 0.00 4.00
7 8 1.197721 GTTCGTTGAGGATGGCAAGTG 59.802 52.381 0.00 0.00 0.00 3.16
96 97 2.421424 GTGGCCAGTCTGCTTAATTGAG 59.579 50.000 5.11 0.00 0.00 3.02
194 195 3.323751 ACTACAAATACGTGGGTGGAC 57.676 47.619 0.00 0.00 0.00 4.02
204 206 7.335924 TCAATTGGCAAGACCTACTACAAATAC 59.664 37.037 5.96 0.00 40.22 1.89
226 228 3.118261 ACACAACACAGAGTCAGGTCAAT 60.118 43.478 0.00 0.00 0.00 2.57
232 234 2.546795 GGGAGACACAACACAGAGTCAG 60.547 54.545 0.00 0.00 32.48 3.51
238 242 1.301716 CCCGGGAGACACAACACAG 60.302 63.158 18.48 0.00 0.00 3.66
277 282 2.750237 GGTTGCCCGGACATGACC 60.750 66.667 0.73 0.00 0.00 4.02
295 300 0.890542 ATATCTACGTACGCCGGCCA 60.891 55.000 23.46 5.97 42.24 5.36
324 329 2.744202 AGCTGTGCATAGCAAACAGTAC 59.256 45.455 33.12 4.67 46.07 2.73
385 390 3.009723 GTGTATGATGGAAGGGTGTGTG 58.990 50.000 0.00 0.00 0.00 3.82
401 406 6.240176 GGGTATGGGTTTATCTGGATGTGTAT 60.240 42.308 0.00 0.00 0.00 2.29
434 439 2.857592 GCACCTGGCATTTAGATGTG 57.142 50.000 0.00 0.00 43.97 3.21
449 454 4.320788 CCAGTTTCTCATGAAAGAAGCACC 60.321 45.833 12.12 0.00 42.15 5.01
454 459 4.206375 TGCACCAGTTTCTCATGAAAGAA 58.794 39.130 0.00 0.00 42.15 2.52
455 460 3.819368 TGCACCAGTTTCTCATGAAAGA 58.181 40.909 0.00 0.00 42.15 2.52
456 461 4.572985 TTGCACCAGTTTCTCATGAAAG 57.427 40.909 0.00 0.00 42.15 2.62
457 462 4.262121 CCATTGCACCAGTTTCTCATGAAA 60.262 41.667 0.00 0.00 39.59 2.69
458 463 3.256383 CCATTGCACCAGTTTCTCATGAA 59.744 43.478 0.00 0.00 0.00 2.57
460 465 2.094390 CCCATTGCACCAGTTTCTCATG 60.094 50.000 0.00 0.00 0.00 3.07
461 466 2.173519 CCCATTGCACCAGTTTCTCAT 58.826 47.619 0.00 0.00 0.00 2.90
463 468 0.244721 GCCCATTGCACCAGTTTCTC 59.755 55.000 0.00 0.00 40.77 2.87
464 469 1.187567 GGCCCATTGCACCAGTTTCT 61.188 55.000 0.00 0.00 43.89 2.52
465 470 1.293179 GGCCCATTGCACCAGTTTC 59.707 57.895 0.00 0.00 43.89 2.78
466 471 1.053264 TTGGCCCATTGCACCAGTTT 61.053 50.000 0.00 0.00 43.89 2.66
467 472 0.837260 ATTGGCCCATTGCACCAGTT 60.837 50.000 0.00 0.00 43.89 3.16
468 473 1.229272 ATTGGCCCATTGCACCAGT 60.229 52.632 0.00 0.00 43.89 4.00
469 474 1.219664 CATTGGCCCATTGCACCAG 59.780 57.895 0.00 0.00 43.89 4.00
470 475 2.291801 CCATTGGCCCATTGCACCA 61.292 57.895 0.00 0.00 43.89 4.17
471 476 2.585698 CCATTGGCCCATTGCACC 59.414 61.111 0.00 0.00 43.89 5.01
472 477 2.125024 GCCATTGGCCCATTGCAC 60.125 61.111 17.28 0.00 44.06 4.57
521 526 3.994853 GTTGGTTGCAGGCTGGGC 61.995 66.667 17.64 2.80 0.00 5.36
524 538 0.461135 ACTTTGTTGGTTGCAGGCTG 59.539 50.000 10.94 10.94 0.00 4.85
525 539 2.065899 TACTTTGTTGGTTGCAGGCT 57.934 45.000 0.00 0.00 0.00 4.58
526 540 4.718940 ATATACTTTGTTGGTTGCAGGC 57.281 40.909 0.00 0.00 0.00 4.85
528 542 6.837992 ACGTAATATACTTTGTTGGTTGCAG 58.162 36.000 0.00 0.00 0.00 4.41
529 543 6.804770 ACGTAATATACTTTGTTGGTTGCA 57.195 33.333 0.00 0.00 0.00 4.08
558 633 8.364894 TCCAGCAATATACTTTGTATCGTATGT 58.635 33.333 0.00 0.00 0.00 2.29
559 634 8.757164 TCCAGCAATATACTTTGTATCGTATG 57.243 34.615 0.00 0.00 0.00 2.39
560 635 9.944376 AATCCAGCAATATACTTTGTATCGTAT 57.056 29.630 0.00 0.00 0.00 3.06
561 636 9.772973 AAATCCAGCAATATACTTTGTATCGTA 57.227 29.630 0.00 0.00 0.00 3.43
562 637 8.559536 CAAATCCAGCAATATACTTTGTATCGT 58.440 33.333 0.00 0.00 0.00 3.73
563 638 8.017373 CCAAATCCAGCAATATACTTTGTATCG 58.983 37.037 0.00 0.00 0.00 2.92
564 639 9.066892 TCCAAATCCAGCAATATACTTTGTATC 57.933 33.333 0.00 0.00 0.00 2.24
565 640 8.995027 TCCAAATCCAGCAATATACTTTGTAT 57.005 30.769 0.00 0.00 0.00 2.29
566 641 8.995027 ATCCAAATCCAGCAATATACTTTGTA 57.005 30.769 0.00 0.00 0.00 2.41
567 642 7.902920 ATCCAAATCCAGCAATATACTTTGT 57.097 32.000 0.00 0.00 0.00 2.83
568 643 9.037737 CAAATCCAAATCCAGCAATATACTTTG 57.962 33.333 0.00 0.00 0.00 2.77
580 655 6.427853 GGAAACCTTTTCAAATCCAAATCCAG 59.572 38.462 1.34 0.00 0.00 3.86
624 699 8.219546 TGAAGAAAATGTCAACTATGTGTCAA 57.780 30.769 0.00 0.00 0.00 3.18
683 759 9.838339 GGTAAATCAGATCCTCTTCATTTTAGA 57.162 33.333 0.00 0.00 0.00 2.10
684 760 9.844257 AGGTAAATCAGATCCTCTTCATTTTAG 57.156 33.333 0.00 0.00 0.00 1.85
685 761 9.618890 CAGGTAAATCAGATCCTCTTCATTTTA 57.381 33.333 0.00 0.00 0.00 1.52
686 762 7.559170 CCAGGTAAATCAGATCCTCTTCATTTT 59.441 37.037 0.00 0.00 0.00 1.82
688 764 6.388100 TCCAGGTAAATCAGATCCTCTTCATT 59.612 38.462 0.00 0.00 0.00 2.57
698 1935 3.643237 TCTCCGTCCAGGTAAATCAGAT 58.357 45.455 0.00 0.00 41.99 2.90
699 1936 3.095912 TCTCCGTCCAGGTAAATCAGA 57.904 47.619 0.00 0.00 41.99 3.27
705 1942 1.270550 GTCGTTTCTCCGTCCAGGTAA 59.729 52.381 0.00 0.00 41.99 2.85
707 1944 1.664306 GTCGTTTCTCCGTCCAGGT 59.336 57.895 0.00 0.00 41.99 4.00
710 1947 2.049802 GCGTCGTTTCTCCGTCCA 60.050 61.111 0.00 0.00 0.00 4.02
725 2425 0.371301 CACTGGTCACATTCATCGCG 59.629 55.000 0.00 0.00 0.00 5.87
780 2480 4.530857 GTCTCCGTGGCCCATCGG 62.531 72.222 20.29 20.29 46.93 4.18
781 2481 4.873129 CGTCTCCGTGGCCCATCG 62.873 72.222 0.00 2.28 0.00 3.84
883 2584 1.287425 GGACGGACGGAGCTAAATTG 58.713 55.000 0.00 0.00 0.00 2.32
884 2585 0.179119 CGGACGGACGGAGCTAAATT 60.179 55.000 0.00 0.00 0.00 1.82
885 2586 1.318158 ACGGACGGACGGAGCTAAAT 61.318 55.000 6.00 0.00 38.39 1.40
886 2587 1.926511 GACGGACGGACGGAGCTAAA 61.927 60.000 6.00 0.00 38.39 1.85
887 2588 2.360350 ACGGACGGACGGAGCTAA 60.360 61.111 6.00 0.00 38.39 3.09
888 2589 2.821366 GACGGACGGACGGAGCTA 60.821 66.667 6.00 0.00 38.39 3.32
964 2665 0.394352 AGGAAGTTAATGGCGCTGGG 60.394 55.000 7.64 0.00 0.00 4.45
967 2668 1.679032 GGTGAGGAAGTTAATGGCGCT 60.679 52.381 7.64 0.00 0.00 5.92
975 2677 2.295602 GGCGGGGGTGAGGAAGTTA 61.296 63.158 0.00 0.00 0.00 2.24
1084 2851 2.437180 CCTGCAGCATCTTCGGCA 60.437 61.111 8.66 0.00 35.91 5.69
1529 3296 2.409870 CGTCAGCAGGAAATGGCCC 61.410 63.158 0.00 0.00 0.00 5.80
1601 3369 2.093983 GACACGTTCACGATGCGC 59.906 61.111 6.30 0.00 43.02 6.09
1765 3863 8.406297 CGATCGATCAGGTGAGGATAATAATAA 58.594 37.037 24.40 0.00 0.00 1.40
1766 3864 7.468768 GCGATCGATCAGGTGAGGATAATAATA 60.469 40.741 24.40 0.00 0.00 0.98
1767 3865 6.681616 GCGATCGATCAGGTGAGGATAATAAT 60.682 42.308 24.40 0.00 0.00 1.28
1902 4012 1.597854 CGAGCTCCTTGGTGTGCAA 60.598 57.895 8.47 0.00 0.00 4.08
2066 4270 2.877168 GAGCAGCAGATTAATCACCTGG 59.123 50.000 24.62 13.79 31.82 4.45
2081 4293 3.790091 TGATAACACAGATGAGAGCAGC 58.210 45.455 0.00 0.00 0.00 5.25
2083 4295 5.930569 GCATATGATAACACAGATGAGAGCA 59.069 40.000 6.97 0.00 40.51 4.26
2086 4298 7.015001 AGTCTGCATATGATAACACAGATGAGA 59.985 37.037 6.97 0.00 40.51 3.27
2091 4303 5.052481 GCAGTCTGCATATGATAACACAGA 58.948 41.667 20.16 5.66 44.26 3.41
2114 4372 1.128136 CAGAACAGAGTGCAGCGATTG 59.872 52.381 0.00 0.00 0.00 2.67
2115 4373 1.436600 CAGAACAGAGTGCAGCGATT 58.563 50.000 0.00 0.00 0.00 3.34
2200 4513 3.393970 CAGCAAGGAGGGGCGAGA 61.394 66.667 0.00 0.00 34.54 4.04
2411 4757 2.417719 GTGCTTCCCTGTTGACTACTG 58.582 52.381 0.00 0.00 0.00 2.74
2431 4800 2.481104 GCTCAGATGTTCCTCTCCTTCG 60.481 54.545 0.00 0.00 0.00 3.79
2432 4801 2.499289 TGCTCAGATGTTCCTCTCCTTC 59.501 50.000 0.00 0.00 0.00 3.46
2438 4809 1.410517 TCGGATGCTCAGATGTTCCTC 59.589 52.381 0.00 0.00 0.00 3.71
2464 4862 2.448926 TACACGGTTGATGGACACAG 57.551 50.000 0.00 0.00 0.00 3.66
2568 4974 5.839262 GTGACAAACACGATCACTGATTA 57.161 39.130 0.00 0.00 39.72 1.75
2600 5006 4.109050 CCGAGCTCTTTCTTACAGATGAC 58.891 47.826 12.85 0.00 0.00 3.06
2650 5056 4.798882 AGTCAATGACCCTCTAGTCTAGG 58.201 47.826 10.12 0.00 37.66 3.02
2732 5206 6.183360 GGAGTTTGGCTTGCAAATAGTACTAG 60.183 42.308 8.85 0.00 0.00 2.57
2733 5207 5.646360 GGAGTTTGGCTTGCAAATAGTACTA 59.354 40.000 4.77 4.77 0.00 1.82
2764 5403 5.664457 CATCCTGTATGTGTGTACTGACAT 58.336 41.667 12.92 12.92 38.04 3.06
2784 5434 1.134965 ACAGACCAAGCTACGAGCATC 60.135 52.381 9.09 2.52 45.56 3.91
2810 5460 0.809241 GGCATGCCTCACTTCTCTCG 60.809 60.000 29.98 0.00 0.00 4.04
2811 5461 0.251354 TGGCATGCCTCACTTCTCTC 59.749 55.000 35.53 6.75 36.94 3.20
2823 5473 1.871772 GTGAGACACTGTGGCATGC 59.128 57.895 17.28 9.90 0.00 4.06
2880 5541 3.626217 TGTACCAGCACGTACTGAGATAG 59.374 47.826 17.55 2.53 40.25 2.08
2882 5543 2.443416 TGTACCAGCACGTACTGAGAT 58.557 47.619 17.55 5.04 40.25 2.75
2885 5546 3.506844 TGTATTGTACCAGCACGTACTGA 59.493 43.478 17.55 0.00 40.25 3.41
2886 5547 3.840468 TGTATTGTACCAGCACGTACTG 58.160 45.455 8.93 8.93 39.51 2.74
2887 5548 4.491676 CTTGTATTGTACCAGCACGTACT 58.508 43.478 12.79 0.00 39.51 2.73
2888 5549 3.615496 CCTTGTATTGTACCAGCACGTAC 59.385 47.826 6.44 6.44 39.28 3.67
2889 5550 3.258872 ACCTTGTATTGTACCAGCACGTA 59.741 43.478 0.00 0.00 0.00 3.57
2890 5551 2.038033 ACCTTGTATTGTACCAGCACGT 59.962 45.455 0.00 0.00 0.00 4.49
2914 5575 2.221552 ACGCACGCACGTATCATCG 61.222 57.895 0.96 0.00 46.19 3.84
2989 5666 0.517316 GCATATGAATTCGCCCGTCC 59.483 55.000 6.97 0.00 0.00 4.79
2993 5670 1.210155 GCCGCATATGAATTCGCCC 59.790 57.895 6.97 0.00 0.00 6.13
2997 5674 1.466360 GCATCGGCCGCATATGAATTC 60.466 52.381 24.86 7.09 0.00 2.17
2999 5676 2.174334 GCATCGGCCGCATATGAAT 58.826 52.632 24.86 8.36 0.00 2.57
3045 5722 1.149361 GGCGCAATCATTCGGACGTA 61.149 55.000 10.83 0.00 0.00 3.57
3049 5726 2.894879 CGGGCGCAATCATTCGGA 60.895 61.111 10.83 0.00 0.00 4.55
3156 5841 6.992063 AGTCAAATATAAAGAGCACTGGTG 57.008 37.500 0.00 0.00 0.00 4.17
3157 5842 8.409358 AAAAGTCAAATATAAAGAGCACTGGT 57.591 30.769 0.00 0.00 0.00 4.00
3215 5900 5.596836 TGCATCCTGGGAAATAATTTCAC 57.403 39.130 0.00 0.00 43.38 3.18
3216 5901 9.772605 ATATATGCATCCTGGGAAATAATTTCA 57.227 29.630 0.19 0.00 41.43 2.69
3222 5907 9.851686 GAATGTATATATGCATCCTGGGAAATA 57.148 33.333 15.57 0.00 31.76 1.40
3223 5908 8.563502 AGAATGTATATATGCATCCTGGGAAAT 58.436 33.333 15.57 0.00 31.76 2.17
3224 5909 7.830697 CAGAATGTATATATGCATCCTGGGAAA 59.169 37.037 18.35 0.00 33.03 3.13
3225 5910 7.182568 TCAGAATGTATATATGCATCCTGGGAA 59.817 37.037 23.28 7.67 36.28 3.97
3226 5911 6.673537 TCAGAATGTATATATGCATCCTGGGA 59.326 38.462 23.28 8.26 36.28 4.37
3227 5912 6.892485 TCAGAATGTATATATGCATCCTGGG 58.108 40.000 23.28 5.83 36.28 4.45
3228 5913 8.975663 ATTCAGAATGTATATATGCATCCTGG 57.024 34.615 23.28 10.17 36.28 4.45
3231 5916 9.277783 GGGTATTCAGAATGTATATATGCATCC 57.722 37.037 15.57 4.41 37.40 3.51
3232 5917 8.982685 CGGGTATTCAGAATGTATATATGCATC 58.017 37.037 15.57 9.88 37.40 3.91
3233 5918 8.486210 ACGGGTATTCAGAATGTATATATGCAT 58.514 33.333 10.21 10.21 37.40 3.96
3234 5919 7.847096 ACGGGTATTCAGAATGTATATATGCA 58.153 34.615 5.94 5.94 37.40 3.96
3235 5920 8.604035 CAACGGGTATTCAGAATGTATATATGC 58.396 37.037 5.85 0.00 37.40 3.14
3236 5921 8.604035 GCAACGGGTATTCAGAATGTATATATG 58.396 37.037 5.85 0.00 37.40 1.78
3237 5922 8.318412 TGCAACGGGTATTCAGAATGTATATAT 58.682 33.333 5.85 0.00 37.40 0.86
3238 5923 7.672240 TGCAACGGGTATTCAGAATGTATATA 58.328 34.615 5.85 0.00 37.40 0.86
3239 5924 6.530120 TGCAACGGGTATTCAGAATGTATAT 58.470 36.000 5.85 0.00 37.40 0.86
3240 5925 5.919755 TGCAACGGGTATTCAGAATGTATA 58.080 37.500 5.85 0.00 37.40 1.47
3241 5926 4.776349 TGCAACGGGTATTCAGAATGTAT 58.224 39.130 5.85 0.00 37.40 2.29
3242 5927 4.209307 TGCAACGGGTATTCAGAATGTA 57.791 40.909 5.85 0.00 37.40 2.29
3243 5928 3.066291 TGCAACGGGTATTCAGAATGT 57.934 42.857 5.85 0.00 37.40 2.71
3244 5929 3.440173 ACTTGCAACGGGTATTCAGAATG 59.560 43.478 5.85 0.00 37.54 2.67
3245 5930 3.686016 ACTTGCAACGGGTATTCAGAAT 58.314 40.909 0.00 0.20 0.00 2.40
3246 5931 3.134574 ACTTGCAACGGGTATTCAGAA 57.865 42.857 0.00 0.00 0.00 3.02
3247 5932 2.851263 ACTTGCAACGGGTATTCAGA 57.149 45.000 0.00 0.00 0.00 3.27
3248 5933 3.666902 CGAAACTTGCAACGGGTATTCAG 60.667 47.826 0.00 0.00 0.00 3.02
3249 5934 2.224549 CGAAACTTGCAACGGGTATTCA 59.775 45.455 0.00 0.00 0.00 2.57
3250 5935 2.413634 CCGAAACTTGCAACGGGTATTC 60.414 50.000 16.25 9.11 41.41 1.75
3251 5936 1.538075 CCGAAACTTGCAACGGGTATT 59.462 47.619 16.25 2.54 41.41 1.89
3252 5937 1.161843 CCGAAACTTGCAACGGGTAT 58.838 50.000 16.25 0.00 41.41 2.73
3253 5938 2.619362 CCGAAACTTGCAACGGGTA 58.381 52.632 16.25 0.00 41.41 3.69
3254 5939 3.427670 CCGAAACTTGCAACGGGT 58.572 55.556 16.25 1.31 41.41 5.28
3257 5942 2.741122 TTGTACCGAAACTTGCAACG 57.259 45.000 0.00 0.00 0.00 4.10
3258 5943 4.855531 AGATTTGTACCGAAACTTGCAAC 58.144 39.130 0.00 0.00 0.00 4.17
3259 5944 4.319190 CGAGATTTGTACCGAAACTTGCAA 60.319 41.667 0.00 0.00 0.00 4.08
3260 5945 3.185594 CGAGATTTGTACCGAAACTTGCA 59.814 43.478 0.00 0.00 0.00 4.08
3261 5946 3.185797 ACGAGATTTGTACCGAAACTTGC 59.814 43.478 0.00 0.00 0.00 4.01
3262 5947 4.985044 ACGAGATTTGTACCGAAACTTG 57.015 40.909 0.00 0.00 0.00 3.16
3263 5948 5.996669 AAACGAGATTTGTACCGAAACTT 57.003 34.783 0.00 0.00 0.00 2.66
3264 5949 5.744490 CAAAACGAGATTTGTACCGAAACT 58.256 37.500 0.00 0.00 35.93 2.66
3274 5959 9.329913 CTATAGTCCAAAACAAAACGAGATTTG 57.670 33.333 10.13 10.13 44.11 2.32
3275 5960 9.280174 TCTATAGTCCAAAACAAAACGAGATTT 57.720 29.630 0.00 0.00 0.00 2.17
3276 5961 8.842358 TCTATAGTCCAAAACAAAACGAGATT 57.158 30.769 0.00 0.00 0.00 2.40
3277 5962 8.842358 TTCTATAGTCCAAAACAAAACGAGAT 57.158 30.769 0.00 0.00 0.00 2.75
3278 5963 8.665643 TTTCTATAGTCCAAAACAAAACGAGA 57.334 30.769 0.00 0.00 0.00 4.04
3279 5964 9.724839 TTTTTCTATAGTCCAAAACAAAACGAG 57.275 29.630 0.00 0.00 0.00 4.18
3334 6019 6.409524 TTCTGACAGAAATGGCATCTTTTT 57.590 33.333 15.58 0.00 29.99 1.94
3335 6020 6.409524 TTTCTGACAGAAATGGCATCTTTT 57.590 33.333 23.67 0.00 39.13 2.27
3376 6061 9.807921 AGAGAAGAAATACTTTGTATTTTGGGA 57.192 29.630 14.38 0.00 39.13 4.37
3392 6077 8.700973 GGACTGGTAGAAATCTAGAGAAGAAAT 58.299 37.037 0.00 0.00 37.89 2.17
3393 6078 7.896496 AGGACTGGTAGAAATCTAGAGAAGAAA 59.104 37.037 0.00 0.00 37.89 2.52
3394 6079 7.415086 AGGACTGGTAGAAATCTAGAGAAGAA 58.585 38.462 0.00 0.00 37.89 2.52
3395 6080 6.975949 AGGACTGGTAGAAATCTAGAGAAGA 58.024 40.000 0.00 0.00 39.02 2.87
3396 6081 7.654022 AAGGACTGGTAGAAATCTAGAGAAG 57.346 40.000 0.00 0.00 0.00 2.85
3397 6082 7.780745 CCTAAGGACTGGTAGAAATCTAGAGAA 59.219 40.741 0.00 0.00 0.00 2.87
3398 6083 7.129038 TCCTAAGGACTGGTAGAAATCTAGAGA 59.871 40.741 0.00 0.00 0.00 3.10
3399 6084 7.291566 TCCTAAGGACTGGTAGAAATCTAGAG 58.708 42.308 0.00 0.00 0.00 2.43
3400 6085 7.222180 TCCTAAGGACTGGTAGAAATCTAGA 57.778 40.000 0.00 0.00 0.00 2.43
3401 6086 7.899648 TTCCTAAGGACTGGTAGAAATCTAG 57.100 40.000 0.00 0.00 0.00 2.43
3403 6088 8.875168 CATATTCCTAAGGACTGGTAGAAATCT 58.125 37.037 0.00 0.00 0.00 2.40
3404 6089 8.652290 ACATATTCCTAAGGACTGGTAGAAATC 58.348 37.037 0.00 0.00 0.00 2.17
3405 6090 8.432805 CACATATTCCTAAGGACTGGTAGAAAT 58.567 37.037 0.00 0.00 0.00 2.17
3406 6091 7.402071 ACACATATTCCTAAGGACTGGTAGAAA 59.598 37.037 0.00 0.00 0.00 2.52
3407 6092 6.901300 ACACATATTCCTAAGGACTGGTAGAA 59.099 38.462 0.00 0.00 0.00 2.10
3408 6093 6.441222 ACACATATTCCTAAGGACTGGTAGA 58.559 40.000 0.00 0.00 0.00 2.59
3409 6094 6.732896 ACACATATTCCTAAGGACTGGTAG 57.267 41.667 0.00 0.00 0.00 3.18
3410 6095 6.263842 CGTACACATATTCCTAAGGACTGGTA 59.736 42.308 0.00 0.00 0.00 3.25
3411 6096 5.068723 CGTACACATATTCCTAAGGACTGGT 59.931 44.000 0.00 0.00 0.00 4.00
3412 6097 5.068723 ACGTACACATATTCCTAAGGACTGG 59.931 44.000 0.00 0.00 0.00 4.00
3413 6098 6.145338 ACGTACACATATTCCTAAGGACTG 57.855 41.667 0.00 0.00 0.00 3.51
3414 6099 8.474710 AATACGTACACATATTCCTAAGGACT 57.525 34.615 0.00 0.00 0.00 3.85
3415 6100 8.355169 TGAATACGTACACATATTCCTAAGGAC 58.645 37.037 0.00 0.00 37.10 3.85
3416 6101 8.355169 GTGAATACGTACACATATTCCTAAGGA 58.645 37.037 10.52 0.00 37.10 3.36
3417 6102 8.139350 TGTGAATACGTACACATATTCCTAAGG 58.861 37.037 13.33 0.00 41.19 2.69
3429 6114 9.814507 TGAAAACAAATATGTGAATACGTACAC 57.185 29.630 8.89 8.89 40.46 2.90
3460 6145 4.630894 ACACACTTTCGATGCTCAAAAA 57.369 36.364 0.00 0.00 0.00 1.94
3461 6146 4.630894 AACACACTTTCGATGCTCAAAA 57.369 36.364 0.00 0.00 0.00 2.44
3462 6147 4.630894 AAACACACTTTCGATGCTCAAA 57.369 36.364 0.00 0.00 0.00 2.69
3463 6148 4.630894 AAAACACACTTTCGATGCTCAA 57.369 36.364 0.00 0.00 0.00 3.02
3464 6149 4.095632 TGAAAAACACACTTTCGATGCTCA 59.904 37.500 0.00 0.00 35.88 4.26
3465 6150 4.597079 TGAAAAACACACTTTCGATGCTC 58.403 39.130 0.00 0.00 35.88 4.26
3466 6151 4.630894 TGAAAAACACACTTTCGATGCT 57.369 36.364 0.00 0.00 35.88 3.79
3467 6152 5.694674 TTTGAAAAACACACTTTCGATGC 57.305 34.783 0.00 0.00 35.88 3.91
3488 6173 9.558396 TCCACTGCTTTTGATATTTGAATTTTT 57.442 25.926 0.00 0.00 0.00 1.94
3489 6174 9.211485 CTCCACTGCTTTTGATATTTGAATTTT 57.789 29.630 0.00 0.00 0.00 1.82
3490 6175 7.332678 GCTCCACTGCTTTTGATATTTGAATTT 59.667 33.333 0.00 0.00 0.00 1.82
3491 6176 6.815142 GCTCCACTGCTTTTGATATTTGAATT 59.185 34.615 0.00 0.00 0.00 2.17
3492 6177 6.154021 AGCTCCACTGCTTTTGATATTTGAAT 59.846 34.615 0.00 0.00 40.93 2.57
3493 6178 5.477984 AGCTCCACTGCTTTTGATATTTGAA 59.522 36.000 0.00 0.00 40.93 2.69
3494 6179 5.012239 AGCTCCACTGCTTTTGATATTTGA 58.988 37.500 0.00 0.00 40.93 2.69
3495 6180 5.320549 AGCTCCACTGCTTTTGATATTTG 57.679 39.130 0.00 0.00 40.93 2.32
3496 6181 4.095483 CGAGCTCCACTGCTTTTGATATTT 59.905 41.667 8.47 0.00 44.17 1.40
3497 6182 3.624861 CGAGCTCCACTGCTTTTGATATT 59.375 43.478 8.47 0.00 44.17 1.28
3498 6183 3.201290 CGAGCTCCACTGCTTTTGATAT 58.799 45.455 8.47 0.00 44.17 1.63
3499 6184 2.621338 CGAGCTCCACTGCTTTTGATA 58.379 47.619 8.47 0.00 44.17 2.15
3500 6185 1.446907 CGAGCTCCACTGCTTTTGAT 58.553 50.000 8.47 0.00 44.17 2.57
3501 6186 0.603707 CCGAGCTCCACTGCTTTTGA 60.604 55.000 8.47 0.00 44.17 2.69
3502 6187 1.871772 CCGAGCTCCACTGCTTTTG 59.128 57.895 8.47 0.00 44.17 2.44
3503 6188 1.968540 GCCGAGCTCCACTGCTTTT 60.969 57.895 8.47 0.00 44.17 2.27
3504 6189 2.359230 GCCGAGCTCCACTGCTTT 60.359 61.111 8.47 0.00 44.17 3.51
3505 6190 4.400961 GGCCGAGCTCCACTGCTT 62.401 66.667 8.47 0.00 44.17 3.91
3507 6192 4.828925 GAGGCCGAGCTCCACTGC 62.829 72.222 8.47 5.90 0.00 4.40
3508 6193 3.073735 AGAGGCCGAGCTCCACTG 61.074 66.667 8.47 0.00 0.00 3.66
3509 6194 3.073735 CAGAGGCCGAGCTCCACT 61.074 66.667 8.47 3.48 0.00 4.00
3510 6195 4.828925 GCAGAGGCCGAGCTCCAC 62.829 72.222 8.47 0.00 0.00 4.02
3512 6197 4.527583 CTGCAGAGGCCGAGCTCC 62.528 72.222 8.42 0.00 40.13 4.70
3520 6205 1.583477 GAAAAGTGGCTGCAGAGGC 59.417 57.895 20.43 5.00 45.19 4.70
3521 6206 0.886490 ACGAAAAGTGGCTGCAGAGG 60.886 55.000 20.43 0.00 0.00 3.69
3522 6207 0.236711 CACGAAAAGTGGCTGCAGAG 59.763 55.000 20.43 0.00 46.77 3.35
3523 6208 2.320215 CACGAAAAGTGGCTGCAGA 58.680 52.632 20.43 0.00 46.77 4.26
3524 6209 4.929198 CACGAAAAGTGGCTGCAG 57.071 55.556 10.11 10.11 46.77 4.41
3532 6217 1.164041 CGGCCAAGGACACGAAAAGT 61.164 55.000 2.24 0.00 0.00 2.66
3533 6218 1.164041 ACGGCCAAGGACACGAAAAG 61.164 55.000 2.24 0.00 0.00 2.27
3534 6219 0.748729 AACGGCCAAGGACACGAAAA 60.749 50.000 2.24 0.00 0.00 2.29
3535 6220 0.748729 AAACGGCCAAGGACACGAAA 60.749 50.000 2.24 0.00 0.00 3.46
3536 6221 0.748729 AAAACGGCCAAGGACACGAA 60.749 50.000 2.24 0.00 0.00 3.85
3537 6222 1.153127 AAAACGGCCAAGGACACGA 60.153 52.632 2.24 0.00 0.00 4.35
3538 6223 1.281656 GAAAACGGCCAAGGACACG 59.718 57.895 2.24 0.00 0.00 4.49
3539 6224 1.658114 GGAAAACGGCCAAGGACAC 59.342 57.895 2.24 0.00 0.00 3.67
3540 6225 1.529713 GGGAAAACGGCCAAGGACA 60.530 57.895 2.24 0.00 0.00 4.02
3541 6226 0.826256 AAGGGAAAACGGCCAAGGAC 60.826 55.000 2.24 0.00 0.00 3.85
3542 6227 0.825840 CAAGGGAAAACGGCCAAGGA 60.826 55.000 2.24 0.00 0.00 3.36
3543 6228 0.825840 TCAAGGGAAAACGGCCAAGG 60.826 55.000 2.24 0.00 0.00 3.61
3544 6229 1.036707 TTCAAGGGAAAACGGCCAAG 58.963 50.000 2.24 0.00 0.00 3.61
3545 6230 0.747852 GTTCAAGGGAAAACGGCCAA 59.252 50.000 2.24 0.00 34.13 4.52
3546 6231 0.395862 TGTTCAAGGGAAAACGGCCA 60.396 50.000 2.24 0.00 34.13 5.36
3547 6232 0.313987 CTGTTCAAGGGAAAACGGCC 59.686 55.000 0.00 0.00 34.13 6.13
3548 6233 0.313987 CCTGTTCAAGGGAAAACGGC 59.686 55.000 0.00 0.00 43.15 5.68
3557 6242 1.228675 AAGCCAGCCCTGTTCAAGG 60.229 57.895 0.00 0.00 46.94 3.61
3558 6243 1.530013 CCAAGCCAGCCCTGTTCAAG 61.530 60.000 0.00 0.00 0.00 3.02
3559 6244 1.531365 CCAAGCCAGCCCTGTTCAA 60.531 57.895 0.00 0.00 0.00 2.69
3560 6245 2.115910 CCAAGCCAGCCCTGTTCA 59.884 61.111 0.00 0.00 0.00 3.18
3561 6246 1.676967 CTCCAAGCCAGCCCTGTTC 60.677 63.158 0.00 0.00 0.00 3.18
3562 6247 2.437897 CTCCAAGCCAGCCCTGTT 59.562 61.111 0.00 0.00 0.00 3.16
3563 6248 3.655211 CCTCCAAGCCAGCCCTGT 61.655 66.667 0.00 0.00 0.00 4.00
3564 6249 4.437587 CCCTCCAAGCCAGCCCTG 62.438 72.222 0.00 0.00 0.00 4.45
3566 6251 4.432741 GACCCTCCAAGCCAGCCC 62.433 72.222 0.00 0.00 0.00 5.19
3567 6252 4.432741 GGACCCTCCAAGCCAGCC 62.433 72.222 0.00 0.00 36.28 4.85
3568 6253 4.432741 GGGACCCTCCAAGCCAGC 62.433 72.222 2.09 0.00 38.64 4.85
3569 6254 2.203549 GAAGGGACCCTCCAAGCCAG 62.204 65.000 15.27 0.00 38.64 4.85
3570 6255 2.121506 AAGGGACCCTCCAAGCCA 60.122 61.111 15.27 0.00 38.64 4.75
3571 6256 2.677848 GAAGGGACCCTCCAAGCC 59.322 66.667 15.27 0.00 38.64 4.35
3572 6257 1.501654 AAGGAAGGGACCCTCCAAGC 61.502 60.000 23.43 9.33 38.64 4.01
3573 6258 1.076438 AAAGGAAGGGACCCTCCAAG 58.924 55.000 23.43 0.00 38.64 3.61
3574 6259 1.541275 AAAAGGAAGGGACCCTCCAA 58.459 50.000 23.43 0.00 38.64 3.53
3575 6260 1.541275 AAAAAGGAAGGGACCCTCCA 58.459 50.000 23.43 0.00 38.64 3.86
3591 6276 4.216902 CAGCCATCTCATGTCACAGAAAAA 59.783 41.667 0.00 0.00 0.00 1.94
3592 6277 3.754850 CAGCCATCTCATGTCACAGAAAA 59.245 43.478 0.00 0.00 0.00 2.29
3593 6278 3.340928 CAGCCATCTCATGTCACAGAAA 58.659 45.455 0.00 0.00 0.00 2.52
3594 6279 2.938314 GCAGCCATCTCATGTCACAGAA 60.938 50.000 0.00 0.00 0.00 3.02
3595 6280 1.406477 GCAGCCATCTCATGTCACAGA 60.406 52.381 0.00 0.00 0.00 3.41
3596 6281 1.015109 GCAGCCATCTCATGTCACAG 58.985 55.000 0.00 0.00 0.00 3.66
3597 6282 0.616891 AGCAGCCATCTCATGTCACA 59.383 50.000 0.00 0.00 0.00 3.58
3598 6283 1.669779 GAAGCAGCCATCTCATGTCAC 59.330 52.381 0.00 0.00 0.00 3.67
3599 6284 1.407851 GGAAGCAGCCATCTCATGTCA 60.408 52.381 0.00 0.00 0.00 3.58
3600 6285 1.134159 AGGAAGCAGCCATCTCATGTC 60.134 52.381 0.00 0.00 0.00 3.06
3601 6286 0.917533 AGGAAGCAGCCATCTCATGT 59.082 50.000 0.00 0.00 0.00 3.21
3602 6287 1.309950 CAGGAAGCAGCCATCTCATG 58.690 55.000 0.00 0.00 0.00 3.07
3603 6288 0.917533 ACAGGAAGCAGCCATCTCAT 59.082 50.000 0.00 0.00 0.00 2.90
3604 6289 0.251354 GACAGGAAGCAGCCATCTCA 59.749 55.000 0.00 0.00 0.00 3.27
3605 6290 0.540923 AGACAGGAAGCAGCCATCTC 59.459 55.000 0.00 0.00 0.00 2.75
3606 6291 0.540923 GAGACAGGAAGCAGCCATCT 59.459 55.000 0.00 0.36 0.00 2.90
3607 6292 0.540923 AGAGACAGGAAGCAGCCATC 59.459 55.000 0.00 0.00 0.00 3.51
3608 6293 0.540923 GAGAGACAGGAAGCAGCCAT 59.459 55.000 0.00 0.00 0.00 4.40
3609 6294 1.881903 CGAGAGACAGGAAGCAGCCA 61.882 60.000 0.00 0.00 0.00 4.75
3610 6295 1.153667 CGAGAGACAGGAAGCAGCC 60.154 63.158 0.00 0.00 0.00 4.85
3611 6296 4.492955 CGAGAGACAGGAAGCAGC 57.507 61.111 0.00 0.00 0.00 5.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.