Multiple sequence alignment - TraesCS5A01G526900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G526900 chr5A 100.000 3316 0 0 1 3316 687654112 687657427 0.000000e+00 6124.0
1 TraesCS5A01G526900 chr5A 85.577 208 24 4 442 649 557116330 557116129 2.590000e-51 213.0
2 TraesCS5A01G526900 chr4D 91.543 2424 116 37 648 3034 503175535 503177906 0.000000e+00 3258.0
3 TraesCS5A01G526900 chr4D 89.800 451 29 8 1 436 503174983 503175431 2.230000e-156 562.0
4 TraesCS5A01G526900 chr4D 86.777 242 20 5 3029 3259 387080738 387080978 3.280000e-65 259.0
5 TraesCS5A01G526900 chr4D 85.520 221 29 2 427 646 495615873 495616091 9.250000e-56 228.0
6 TraesCS5A01G526900 chr4D 81.379 145 23 4 2740 2881 439837024 439837167 7.520000e-22 115.0
7 TraesCS5A01G526900 chr4B 90.526 1995 118 36 648 2622 647694231 647692288 0.000000e+00 2571.0
8 TraesCS5A01G526900 chr4B 89.495 1761 90 38 867 2622 648269149 648270819 0.000000e+00 2139.0
9 TraesCS5A01G526900 chr4B 89.438 1761 91 38 867 2622 648243119 648244789 0.000000e+00 2134.0
10 TraesCS5A01G526900 chr4B 89.324 1761 93 36 867 2622 648193851 648195521 0.000000e+00 2122.0
11 TraesCS5A01G526900 chr4B 91.429 1505 71 21 1123 2622 648219464 648220915 0.000000e+00 2012.0
12 TraesCS5A01G526900 chr4B 91.722 302 20 2 2727 3024 648195886 648196186 6.620000e-112 414.0
13 TraesCS5A01G526900 chr4B 91.946 298 19 3 2727 3020 648245154 648245450 2.380000e-111 412.0
14 TraesCS5A01G526900 chr4B 91.060 302 22 2 2727 3024 648221280 648221580 1.430000e-108 403.0
15 TraesCS5A01G526900 chr4B 90.728 302 23 2 2727 3024 648271184 648271484 6.670000e-107 398.0
16 TraesCS5A01G526900 chr4B 91.111 225 16 3 216 436 647694649 647694425 5.380000e-78 302.0
17 TraesCS5A01G526900 chr4B 90.455 220 17 3 1 216 647698200 647697981 1.510000e-73 287.0
18 TraesCS5A01G526900 chr4B 83.838 99 10 4 867 961 648219275 648219371 4.560000e-14 89.8
19 TraesCS5A01G526900 chr4B 90.909 66 3 3 681 744 648193715 648193779 5.890000e-13 86.1
20 TraesCS5A01G526900 chr4B 89.394 66 4 3 681 744 648219139 648219203 2.740000e-11 80.5
21 TraesCS5A01G526900 chr4B 89.394 66 4 3 681 744 648242983 648243047 2.740000e-11 80.5
22 TraesCS5A01G526900 chr4B 89.394 66 4 3 681 744 648269013 648269077 2.740000e-11 80.5
23 TraesCS5A01G526900 chr4B 95.349 43 2 0 648 690 648193653 648193695 5.940000e-08 69.4
24 TraesCS5A01G526900 chr4B 95.349 43 2 0 648 690 648219079 648219121 5.940000e-08 69.4
25 TraesCS5A01G526900 chr4B 95.349 43 2 0 648 690 648242922 648242964 5.940000e-08 69.4
26 TraesCS5A01G526900 chr4B 95.349 43 2 0 648 690 648268952 648268994 5.940000e-08 69.4
27 TraesCS5A01G526900 chr4B 96.875 32 1 0 988 1019 648219375 648219406 2.000000e-03 54.7
28 TraesCS5A01G526900 chr6A 84.882 1270 157 22 1051 2316 7697549 7698787 0.000000e+00 1249.0
29 TraesCS5A01G526900 chr6A 86.770 1028 119 13 1295 2318 7398221 7397207 0.000000e+00 1129.0
30 TraesCS5A01G526900 chr6A 89.024 82 8 1 2953 3034 602458349 602458429 2.100000e-17 100.0
31 TraesCS5A01G526900 chr6A 94.444 54 3 0 2673 2726 510875007 510875060 2.120000e-12 84.2
32 TraesCS5A01G526900 chr6B 84.784 1275 148 31 1051 2316 14126299 14127536 0.000000e+00 1238.0
33 TraesCS5A01G526900 chr6B 86.647 1026 121 9 1295 2318 13975276 13974265 0.000000e+00 1122.0
34 TraesCS5A01G526900 chr6D 84.484 1289 160 25 1051 2316 7552039 7553310 0.000000e+00 1236.0
35 TraesCS5A01G526900 chr6D 83.133 664 100 10 1051 1713 7508579 7507927 2.200000e-166 595.0
36 TraesCS5A01G526900 chr6D 85.586 222 30 1 427 648 409781810 409781591 7.150000e-57 231.0
37 TraesCS5A01G526900 chr6D 85.581 215 28 2 433 647 304688732 304688521 4.310000e-54 222.0
38 TraesCS5A01G526900 chr6D 87.671 146 16 2 1051 1196 7512488 7512345 5.690000e-38 169.0
39 TraesCS5A01G526900 chr6D 87.952 83 8 2 2953 3034 455574631 455574712 2.720000e-16 97.1
40 TraesCS5A01G526900 chr5D 85.333 225 30 2 430 653 531998552 531998330 2.570000e-56 230.0
41 TraesCS5A01G526900 chr5D 85.845 219 22 7 3057 3266 411246997 411246779 1.200000e-54 224.0
42 TraesCS5A01G526900 chr5D 82.927 246 32 5 3029 3266 532659647 532659404 2.590000e-51 213.0
43 TraesCS5A01G526900 chr4A 85.780 218 28 2 437 654 665472465 665472679 9.250000e-56 228.0
44 TraesCS5A01G526900 chr4A 85.321 218 29 2 433 649 733536325 733536110 4.310000e-54 222.0
45 TraesCS5A01G526900 chr4A 85.455 220 19 8 3029 3236 68560604 68560822 2.000000e-52 217.0
46 TraesCS5A01G526900 chr4A 82.329 249 26 11 3029 3266 697931190 697931431 2.020000e-47 200.0
47 TraesCS5A01G526900 chr1B 87.000 200 24 1 437 636 647909242 647909045 1.200000e-54 224.0
48 TraesCS5A01G526900 chr1D 84.793 217 29 3 433 649 302343316 302343104 7.200000e-52 215.0
49 TraesCS5A01G526900 chr2B 80.335 239 37 7 3031 3262 785273096 785272861 4.400000e-39 172.0
50 TraesCS5A01G526900 chr7B 83.598 189 22 3 3030 3211 496968748 496968562 5.690000e-38 169.0
51 TraesCS5A01G526900 chr7A 79.828 233 36 8 3029 3260 29841146 29841368 3.420000e-35 159.0
52 TraesCS5A01G526900 chr7A 82.857 140 21 3 2740 2877 197504203 197504065 4.490000e-24 122.0
53 TraesCS5A01G526900 chr7A 76.923 182 31 6 2673 2844 574078723 574078543 3.520000e-15 93.5
54 TraesCS5A01G526900 chr7A 84.337 83 11 2 2953 3034 37846843 37846762 2.740000e-11 80.5
55 TraesCS5A01G526900 chrUn 78.543 247 43 6 3029 3266 372173642 372173397 1.590000e-33 154.0
56 TraesCS5A01G526900 chr5B 77.828 221 31 13 2673 2877 691578857 691578639 1.620000e-23 121.0
57 TraesCS5A01G526900 chr5B 75.785 223 34 12 2673 2878 691273294 691273075 9.790000e-16 95.3
58 TraesCS5A01G526900 chr2D 78.500 200 31 5 2673 2860 26461425 26461624 1.620000e-23 121.0
59 TraesCS5A01G526900 chr1A 83.051 118 17 2 2740 2855 21478819 21478935 1.630000e-18 104.0
60 TraesCS5A01G526900 chr3A 95.556 45 2 0 9 53 519762905 519762949 4.590000e-09 73.1
61 TraesCS5A01G526900 chr3B 90.476 42 2 2 2660 2700 107957370 107957410 2.000000e-03 54.7
62 TraesCS5A01G526900 chr3B 100.000 29 0 0 2669 2697 397374470 397374498 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G526900 chr5A 687654112 687657427 3315 False 6124.000000 6124 100.000000 1 3316 1 chr5A.!!$F1 3315
1 TraesCS5A01G526900 chr4D 503174983 503177906 2923 False 1910.000000 3258 90.671500 1 3034 2 chr4D.!!$F4 3033
2 TraesCS5A01G526900 chr4B 647692288 647698200 5912 True 1053.333333 2571 90.697333 1 2622 3 chr4B.!!$R1 2621
3 TraesCS5A01G526900 chr4B 648242922 648245450 2528 False 673.975000 2134 91.531750 648 3020 4 chr4B.!!$F3 2372
4 TraesCS5A01G526900 chr4B 648193653 648196186 2533 False 672.875000 2122 91.826000 648 3024 4 chr4B.!!$F1 2376
5 TraesCS5A01G526900 chr4B 648268952 648271484 2532 False 671.725000 2139 91.241500 648 3024 4 chr4B.!!$F4 2376
6 TraesCS5A01G526900 chr4B 648219079 648221580 2501 False 451.566667 2012 91.324167 648 3024 6 chr4B.!!$F2 2376
7 TraesCS5A01G526900 chr6A 7697549 7698787 1238 False 1249.000000 1249 84.882000 1051 2316 1 chr6A.!!$F1 1265
8 TraesCS5A01G526900 chr6A 7397207 7398221 1014 True 1129.000000 1129 86.770000 1295 2318 1 chr6A.!!$R1 1023
9 TraesCS5A01G526900 chr6B 14126299 14127536 1237 False 1238.000000 1238 84.784000 1051 2316 1 chr6B.!!$F1 1265
10 TraesCS5A01G526900 chr6B 13974265 13975276 1011 True 1122.000000 1122 86.647000 1295 2318 1 chr6B.!!$R1 1023
11 TraesCS5A01G526900 chr6D 7552039 7553310 1271 False 1236.000000 1236 84.484000 1051 2316 1 chr6D.!!$F1 1265
12 TraesCS5A01G526900 chr6D 7507927 7512488 4561 True 382.000000 595 85.402000 1051 1713 2 chr6D.!!$R3 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 3837 0.251341 AAGTTTTGCCCGGCTCTGAT 60.251 50.0 11.61 0.0 0.0 2.90 F
802 4239 0.314935 CAACCGTTTTGGATGCTGCT 59.685 50.0 0.00 0.0 42.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1293 8688 0.451783 CCGGATTTTTCGCCTGGAAG 59.548 55.0 0.0 0.0 35.70 3.46 R
2775 10464 0.098728 CCATTGAACGAACATCGCCC 59.901 55.0 0.0 0.0 45.12 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
159 164 7.264373 ACAACAACTTTAGTTTCCATCTCTG 57.736 36.000 0.00 0.00 35.83 3.35
167 172 4.414337 AGTTTCCATCTCTGTATCTGGC 57.586 45.455 0.00 0.00 0.00 4.85
259 3598 2.353579 GCTTACGTTGTTCACTTGTGGT 59.646 45.455 0.00 0.00 0.00 4.16
270 3609 1.134401 CACTTGTGGTCAGTGTCTGGT 60.134 52.381 0.00 0.00 31.51 4.00
281 3620 4.872691 GTCAGTGTCTGGTGAATTATCTGG 59.127 45.833 0.00 0.00 31.51 3.86
296 3635 9.881649 TGAATTATCTGGTATCTTATCTCATGC 57.118 33.333 0.00 0.00 0.00 4.06
317 3656 9.428097 TCATGCTTATGTTCATGTATGATCTAC 57.572 33.333 0.00 0.00 40.54 2.59
319 3658 6.868339 TGCTTATGTTCATGTATGATCTACGG 59.132 38.462 0.00 0.00 36.56 4.02
336 3681 8.350722 TGATCTACGGACTATACAAGATTTGTC 58.649 37.037 0.00 0.00 44.12 3.18
350 3697 6.199154 ACAAGATTTGTCGATCAGTATTAGCG 59.801 38.462 0.00 0.00 40.56 4.26
416 3767 8.567285 AATCCCTAAATACTCAACAGTCAAAG 57.433 34.615 0.00 0.00 33.62 2.77
431 3782 6.581712 ACAGTCAAAGCAAAAATATTGTGGT 58.418 32.000 0.00 0.00 0.00 4.16
432 3783 6.701400 ACAGTCAAAGCAAAAATATTGTGGTC 59.299 34.615 4.97 0.00 0.00 4.02
433 3784 6.925165 CAGTCAAAGCAAAAATATTGTGGTCT 59.075 34.615 4.97 0.00 0.00 3.85
435 3786 7.439056 AGTCAAAGCAAAAATATTGTGGTCTTG 59.561 33.333 4.97 10.11 0.00 3.02
437 3788 4.568956 AGCAAAAATATTGTGGTCTTGGC 58.431 39.130 0.00 0.00 0.00 4.52
438 3789 4.040217 AGCAAAAATATTGTGGTCTTGGCA 59.960 37.500 0.00 0.00 0.00 4.92
439 3790 4.937015 GCAAAAATATTGTGGTCTTGGCAT 59.063 37.500 0.00 0.00 0.00 4.40
440 3791 5.163834 GCAAAAATATTGTGGTCTTGGCATG 60.164 40.000 0.00 0.00 0.00 4.06
442 3793 6.549433 AAAATATTGTGGTCTTGGCATGAT 57.451 33.333 6.35 0.00 0.00 2.45
443 3794 5.524971 AATATTGTGGTCTTGGCATGATG 57.475 39.130 6.35 0.00 0.00 3.07
446 3797 1.352017 TGTGGTCTTGGCATGATGACT 59.648 47.619 6.35 0.00 0.00 3.41
450 3801 3.507233 TGGTCTTGGCATGATGACTTTTC 59.493 43.478 6.35 0.00 0.00 2.29
451 3802 3.507233 GGTCTTGGCATGATGACTTTTCA 59.493 43.478 6.35 0.00 35.73 2.69
453 3804 4.919754 GTCTTGGCATGATGACTTTTCAAC 59.080 41.667 6.35 0.00 34.61 3.18
454 3805 4.828939 TCTTGGCATGATGACTTTTCAACT 59.171 37.500 0.00 0.00 34.61 3.16
455 3806 4.508461 TGGCATGATGACTTTTCAACTG 57.492 40.909 0.00 0.00 34.61 3.16
456 3807 3.890756 TGGCATGATGACTTTTCAACTGT 59.109 39.130 0.00 0.00 34.61 3.55
457 3808 4.022935 TGGCATGATGACTTTTCAACTGTC 60.023 41.667 0.00 0.00 34.61 3.51
458 3809 4.217118 GGCATGATGACTTTTCAACTGTCT 59.783 41.667 0.00 0.00 34.61 3.41
459 3810 5.412594 GGCATGATGACTTTTCAACTGTCTA 59.587 40.000 0.00 0.00 34.61 2.59
460 3811 6.310197 GCATGATGACTTTTCAACTGTCTAC 58.690 40.000 0.00 0.00 34.61 2.59
461 3812 6.148480 GCATGATGACTTTTCAACTGTCTACT 59.852 38.462 0.00 0.00 34.61 2.57
462 3813 7.331934 GCATGATGACTTTTCAACTGTCTACTA 59.668 37.037 0.00 0.00 34.61 1.82
463 3814 8.651588 CATGATGACTTTTCAACTGTCTACTAC 58.348 37.037 0.00 0.00 34.61 2.73
466 3817 7.766219 TGACTTTTCAACTGTCTACTACAAC 57.234 36.000 0.00 0.00 37.74 3.32
467 3818 7.324935 TGACTTTTCAACTGTCTACTACAACA 58.675 34.615 0.00 0.00 37.74 3.33
468 3819 7.820386 TGACTTTTCAACTGTCTACTACAACAA 59.180 33.333 0.00 0.00 37.74 2.83
469 3820 8.197988 ACTTTTCAACTGTCTACTACAACAAG 57.802 34.615 0.00 0.00 37.74 3.16
470 3821 7.822822 ACTTTTCAACTGTCTACTACAACAAGT 59.177 33.333 0.00 0.00 37.74 3.16
471 3822 8.556213 TTTTCAACTGTCTACTACAACAAGTT 57.444 30.769 0.00 0.00 37.74 2.66
472 3823 8.556213 TTTCAACTGTCTACTACAACAAGTTT 57.444 30.769 0.00 0.00 37.74 2.66
473 3824 8.556213 TTCAACTGTCTACTACAACAAGTTTT 57.444 30.769 0.00 0.00 37.74 2.43
474 3825 7.970384 TCAACTGTCTACTACAACAAGTTTTG 58.030 34.615 0.00 0.00 37.74 2.44
475 3826 6.359480 ACTGTCTACTACAACAAGTTTTGC 57.641 37.500 0.00 0.00 37.74 3.68
476 3827 5.296035 ACTGTCTACTACAACAAGTTTTGCC 59.704 40.000 0.00 0.00 37.74 4.52
477 3828 4.577283 TGTCTACTACAACAAGTTTTGCCC 59.423 41.667 0.00 0.00 34.29 5.36
478 3829 3.810941 TCTACTACAACAAGTTTTGCCCG 59.189 43.478 0.00 0.00 0.00 6.13
479 3830 1.679153 ACTACAACAAGTTTTGCCCGG 59.321 47.619 0.00 0.00 0.00 5.73
480 3831 0.386113 TACAACAAGTTTTGCCCGGC 59.614 50.000 1.04 1.04 0.00 6.13
481 3832 1.326951 ACAACAAGTTTTGCCCGGCT 61.327 50.000 11.61 0.00 0.00 5.52
482 3833 0.597377 CAACAAGTTTTGCCCGGCTC 60.597 55.000 11.61 0.00 0.00 4.70
483 3834 0.755327 AACAAGTTTTGCCCGGCTCT 60.755 50.000 11.61 1.30 0.00 4.09
484 3835 1.286880 CAAGTTTTGCCCGGCTCTG 59.713 57.895 11.61 0.00 0.00 3.35
485 3836 1.150536 AAGTTTTGCCCGGCTCTGA 59.849 52.632 11.61 0.00 0.00 3.27
486 3837 0.251341 AAGTTTTGCCCGGCTCTGAT 60.251 50.000 11.61 0.00 0.00 2.90
487 3838 0.962356 AGTTTTGCCCGGCTCTGATG 60.962 55.000 11.61 0.00 0.00 3.07
488 3839 0.960364 GTTTTGCCCGGCTCTGATGA 60.960 55.000 11.61 0.00 0.00 2.92
489 3840 0.677731 TTTTGCCCGGCTCTGATGAG 60.678 55.000 11.61 0.00 42.96 2.90
490 3841 2.541547 TTTGCCCGGCTCTGATGAGG 62.542 60.000 11.61 0.00 40.53 3.86
491 3842 4.247380 GCCCGGCTCTGATGAGGG 62.247 72.222 0.71 7.00 44.72 4.30
492 3843 2.444706 CCCGGCTCTGATGAGGGA 60.445 66.667 0.00 0.00 44.70 4.20
493 3844 2.506061 CCCGGCTCTGATGAGGGAG 61.506 68.421 0.00 0.00 44.70 4.30
494 3845 2.506061 CCGGCTCTGATGAGGGAGG 61.506 68.421 0.00 0.00 40.53 4.30
495 3846 2.506061 CGGCTCTGATGAGGGAGGG 61.506 68.421 0.00 0.00 40.53 4.30
496 3847 2.146061 GGCTCTGATGAGGGAGGGG 61.146 68.421 0.00 0.00 40.53 4.79
497 3848 2.817056 GCTCTGATGAGGGAGGGGC 61.817 68.421 0.00 0.00 40.53 5.80
498 3849 2.444706 TCTGATGAGGGAGGGGCG 60.445 66.667 0.00 0.00 0.00 6.13
499 3850 2.444706 CTGATGAGGGAGGGGCGA 60.445 66.667 0.00 0.00 0.00 5.54
500 3851 1.840650 CTGATGAGGGAGGGGCGAT 60.841 63.158 0.00 0.00 0.00 4.58
501 3852 2.109517 CTGATGAGGGAGGGGCGATG 62.110 65.000 0.00 0.00 0.00 3.84
502 3853 1.838846 GATGAGGGAGGGGCGATGA 60.839 63.158 0.00 0.00 0.00 2.92
503 3854 1.151943 ATGAGGGAGGGGCGATGAT 60.152 57.895 0.00 0.00 0.00 2.45
504 3855 1.486997 ATGAGGGAGGGGCGATGATG 61.487 60.000 0.00 0.00 0.00 3.07
505 3856 2.851102 AGGGAGGGGCGATGATGG 60.851 66.667 0.00 0.00 0.00 3.51
506 3857 4.650377 GGGAGGGGCGATGATGGC 62.650 72.222 0.00 0.00 0.00 4.40
507 3858 4.996434 GGAGGGGCGATGATGGCG 62.996 72.222 0.00 0.00 34.76 5.69
508 3859 4.996434 GAGGGGCGATGATGGCGG 62.996 72.222 0.00 0.00 34.76 6.13
531 3882 3.191539 GCCTTCGGCTCGCTTCAG 61.192 66.667 0.00 0.00 46.69 3.02
532 3883 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
542 3893 2.155924 GCTCGCTTCAGTGTTTGTAGTC 59.844 50.000 0.00 0.00 0.00 2.59
543 3894 2.390938 TCGCTTCAGTGTTTGTAGTCG 58.609 47.619 0.00 0.00 0.00 4.18
544 3895 2.124903 CGCTTCAGTGTTTGTAGTCGT 58.875 47.619 0.00 0.00 0.00 4.34
546 3897 2.153247 GCTTCAGTGTTTGTAGTCGTCG 59.847 50.000 0.00 0.00 0.00 5.12
547 3898 3.369385 CTTCAGTGTTTGTAGTCGTCGT 58.631 45.455 0.00 0.00 0.00 4.34
548 3899 3.425577 TCAGTGTTTGTAGTCGTCGTT 57.574 42.857 0.00 0.00 0.00 3.85
551 3902 3.667261 CAGTGTTTGTAGTCGTCGTTAGG 59.333 47.826 0.00 0.00 0.00 2.69
553 3904 3.423206 GTGTTTGTAGTCGTCGTTAGGTG 59.577 47.826 0.00 0.00 0.00 4.00
554 3905 2.982470 GTTTGTAGTCGTCGTTAGGTGG 59.018 50.000 0.00 0.00 0.00 4.61
555 3906 1.896220 TGTAGTCGTCGTTAGGTGGT 58.104 50.000 0.00 0.00 0.00 4.16
556 3907 1.806542 TGTAGTCGTCGTTAGGTGGTC 59.193 52.381 0.00 0.00 0.00 4.02
557 3908 2.079925 GTAGTCGTCGTTAGGTGGTCT 58.920 52.381 0.00 0.00 0.00 3.85
559 3910 2.079925 AGTCGTCGTTAGGTGGTCTAC 58.920 52.381 0.00 0.00 0.00 2.59
560 3911 1.078709 TCGTCGTTAGGTGGTCTACG 58.921 55.000 0.00 0.00 0.00 3.51
562 3913 1.453155 GTCGTTAGGTGGTCTACGGA 58.547 55.000 0.00 0.00 0.00 4.69
563 3914 2.019984 GTCGTTAGGTGGTCTACGGAT 58.980 52.381 0.00 0.00 0.00 4.18
564 3915 2.424956 GTCGTTAGGTGGTCTACGGATT 59.575 50.000 0.00 0.00 0.00 3.01
565 3916 2.684881 TCGTTAGGTGGTCTACGGATTC 59.315 50.000 0.00 0.00 0.00 2.52
566 3917 2.540361 CGTTAGGTGGTCTACGGATTCG 60.540 54.545 0.00 0.00 43.02 3.34
567 3918 2.684881 GTTAGGTGGTCTACGGATTCGA 59.315 50.000 0.00 0.00 40.11 3.71
568 3919 1.843368 AGGTGGTCTACGGATTCGAA 58.157 50.000 0.00 0.00 40.11 3.71
570 3921 2.764572 AGGTGGTCTACGGATTCGAATT 59.235 45.455 12.81 0.00 40.11 2.17
571 3922 3.197116 AGGTGGTCTACGGATTCGAATTT 59.803 43.478 12.81 2.74 40.11 1.82
572 3923 4.403432 AGGTGGTCTACGGATTCGAATTTA 59.597 41.667 12.81 3.79 40.11 1.40
573 3924 5.105228 AGGTGGTCTACGGATTCGAATTTAA 60.105 40.000 12.81 0.00 40.11 1.52
574 3925 5.756833 GGTGGTCTACGGATTCGAATTTAAT 59.243 40.000 12.81 1.53 40.11 1.40
575 3926 6.259387 GGTGGTCTACGGATTCGAATTTAATT 59.741 38.462 12.81 0.00 40.11 1.40
576 3927 7.201670 GGTGGTCTACGGATTCGAATTTAATTT 60.202 37.037 12.81 0.00 40.11 1.82
578 3929 8.732531 TGGTCTACGGATTCGAATTTAATTTTT 58.267 29.630 12.81 0.00 40.11 1.94
607 3958 7.956420 TTTCTGATGTTCGTTATACTGTTGT 57.044 32.000 0.00 0.00 0.00 3.32
608 3959 6.944557 TCTGATGTTCGTTATACTGTTGTG 57.055 37.500 0.00 0.00 0.00 3.33
609 3960 6.683715 TCTGATGTTCGTTATACTGTTGTGA 58.316 36.000 0.00 0.00 0.00 3.58
610 3961 7.320399 TCTGATGTTCGTTATACTGTTGTGAT 58.680 34.615 0.00 0.00 0.00 3.06
611 3962 7.817478 TCTGATGTTCGTTATACTGTTGTGATT 59.183 33.333 0.00 0.00 0.00 2.57
612 3963 8.989653 TGATGTTCGTTATACTGTTGTGATTA 57.010 30.769 0.00 0.00 0.00 1.75
613 3964 9.425577 TGATGTTCGTTATACTGTTGTGATTAA 57.574 29.630 0.00 0.00 0.00 1.40
616 3967 9.478768 TGTTCGTTATACTGTTGTGATTAAAGA 57.521 29.630 0.00 0.00 0.00 2.52
619 3970 9.863845 TCGTTATACTGTTGTGATTAAAGATGA 57.136 29.630 0.00 0.00 0.00 2.92
638 3989 7.507733 AGATGAATAGATCAGATGTTTTGCC 57.492 36.000 0.00 0.00 42.53 4.52
639 3990 5.739752 TGAATAGATCAGATGTTTTGCCG 57.260 39.130 0.00 0.00 33.04 5.69
640 3991 4.576053 TGAATAGATCAGATGTTTTGCCGG 59.424 41.667 0.00 0.00 33.04 6.13
641 3992 2.787473 AGATCAGATGTTTTGCCGGA 57.213 45.000 5.05 0.00 0.00 5.14
642 3993 3.071874 AGATCAGATGTTTTGCCGGAA 57.928 42.857 5.05 0.00 0.00 4.30
643 3994 3.420893 AGATCAGATGTTTTGCCGGAAA 58.579 40.909 5.05 0.00 0.00 3.13
644 3995 3.826157 AGATCAGATGTTTTGCCGGAAAA 59.174 39.130 5.05 3.64 0.00 2.29
645 3996 4.280677 AGATCAGATGTTTTGCCGGAAAAA 59.719 37.500 16.82 16.82 35.27 1.94
677 4028 4.006989 TGTTTCAAATCCCCATGTCTACG 58.993 43.478 0.00 0.00 0.00 3.51
679 4030 4.771114 TTCAAATCCCCATGTCTACGAT 57.229 40.909 0.00 0.00 0.00 3.73
748 4185 2.553028 GGTGAGAGCCAAATGGAGTTGA 60.553 50.000 2.98 0.00 37.39 3.18
755 4192 2.680577 CCAAATGGAGTTGAGCTTTGC 58.319 47.619 0.00 0.00 37.39 3.68
762 4199 2.353109 GGAGTTGAGCTTTGCCCATTTC 60.353 50.000 0.00 0.00 0.00 2.17
789 4226 2.987355 AAACATTCCCGCCCAACCGT 62.987 55.000 0.00 0.00 0.00 4.83
802 4239 0.314935 CAACCGTTTTGGATGCTGCT 59.685 50.000 0.00 0.00 42.00 4.24
806 4243 1.298157 CGTTTTGGATGCTGCTCCGA 61.298 55.000 0.00 2.68 38.21 4.55
838 4280 6.962182 ACCTGAGGTGAAGATTCATTAATGA 58.038 36.000 14.23 14.23 39.73 2.57
895 4348 1.789523 ACTATAAAGCCCGAGCCTGA 58.210 50.000 0.00 0.00 41.25 3.86
908 4363 2.025155 GAGCCTGACGGATCACTTAGA 58.975 52.381 0.00 0.00 45.12 2.10
909 4364 1.751924 AGCCTGACGGATCACTTAGAC 59.248 52.381 0.00 0.00 0.00 2.59
919 4374 4.238514 GGATCACTTAGACACACACTCAC 58.761 47.826 0.00 0.00 0.00 3.51
956 4415 5.464168 AGCAACTAAGTTCATACGTACGTT 58.536 37.500 27.92 11.59 0.00 3.99
1017 4480 2.443390 ATGGCCATGGGAAGCTGC 60.443 61.111 20.04 0.00 0.00 5.25
1022 4485 2.409870 CCATGGGAAGCTGCGGAAC 61.410 63.158 2.85 0.00 0.00 3.62
1104 4567 3.712907 GGCGTCCTAGTGCCCCAA 61.713 66.667 6.62 0.00 45.73 4.12
1158 4621 2.203788 AGCGACCACCTCCCTGAA 60.204 61.111 0.00 0.00 0.00 3.02
1175 4638 3.587923 CTGAACTCAAGGAGAAGCTCAG 58.412 50.000 0.00 3.44 33.32 3.35
1195 4658 6.002653 TCAGGAGAATCTGTACTGCTACTA 57.997 41.667 0.00 0.00 36.25 1.82
1197 4660 5.009210 CAGGAGAATCTGTACTGCTACTACC 59.991 48.000 0.00 0.00 33.36 3.18
1310 8716 2.556622 TGTTCTTCCAGGCGAAAAATCC 59.443 45.455 0.00 0.00 0.00 3.01
1321 8727 1.258982 CGAAAAATCCGGCATCGAGAG 59.741 52.381 0.00 0.00 39.00 3.20
1415 8821 3.621805 ACCCGCGTGGACATGACA 61.622 61.111 18.79 0.00 37.49 3.58
1958 9364 2.281484 GGGCAGAACGTGGAGCAA 60.281 61.111 8.35 0.00 0.00 3.91
2105 9523 3.234730 GGCCGTCCGATCCTGGAT 61.235 66.667 9.42 9.42 40.91 3.41
2517 9944 1.539869 AGTCCAGCCATGTCCCACT 60.540 57.895 0.00 0.00 0.00 4.00
2683 10372 6.094603 ACATAAAAGATGCAAACTGAGCCTAG 59.905 38.462 0.00 0.00 0.00 3.02
2711 10400 4.456662 TGGTTAGGTTATTTGTGGTGGT 57.543 40.909 0.00 0.00 0.00 4.16
2786 10475 0.736325 AGTCTTTCGGGCGATGTTCG 60.736 55.000 0.00 0.00 43.89 3.95
2901 10590 4.781071 CTTGACTGCAACTCAAAGCTAAG 58.219 43.478 7.66 0.00 0.00 2.18
2973 10662 0.748005 AAATCCGTTCATGCTCCCGG 60.748 55.000 0.00 0.00 41.75 5.73
2976 10665 2.267642 CGTTCATGCTCCCGGGAA 59.732 61.111 26.68 11.73 0.00 3.97
3049 10742 8.782144 TCCAACAAAAAGATGAAATATTTTGGC 58.218 29.630 1.43 0.00 45.99 4.52
3050 10743 8.022550 CCAACAAAAAGATGAAATATTTTGGCC 58.977 33.333 1.43 0.00 45.99 5.36
3051 10744 8.785946 CAACAAAAAGATGAAATATTTTGGCCT 58.214 29.630 3.32 0.00 45.99 5.19
3052 10745 8.326680 ACAAAAAGATGAAATATTTTGGCCTG 57.673 30.769 3.32 0.00 45.99 4.85
3053 10746 7.938490 ACAAAAAGATGAAATATTTTGGCCTGT 59.062 29.630 3.32 0.00 45.99 4.00
3054 10747 7.910441 AAAAGATGAAATATTTTGGCCTGTG 57.090 32.000 3.32 0.00 45.10 3.66
3055 10748 5.014808 AGATGAAATATTTTGGCCTGTGC 57.985 39.130 3.32 0.00 0.00 4.57
3056 10749 4.467082 AGATGAAATATTTTGGCCTGTGCA 59.533 37.500 3.32 0.00 40.13 4.57
3057 10750 4.613925 TGAAATATTTTGGCCTGTGCAA 57.386 36.364 3.32 0.00 40.13 4.08
3058 10751 4.965814 TGAAATATTTTGGCCTGTGCAAA 58.034 34.783 3.32 0.00 40.13 3.68
3059 10752 5.371526 TGAAATATTTTGGCCTGTGCAAAA 58.628 33.333 3.32 1.83 38.65 2.44
3060 10753 5.824624 TGAAATATTTTGGCCTGTGCAAAAA 59.175 32.000 3.32 1.00 44.49 1.94
3085 10778 3.603965 ACACCAGATGTTACCCCAAAA 57.396 42.857 0.00 0.00 38.98 2.44
3086 10779 4.126520 ACACCAGATGTTACCCCAAAAT 57.873 40.909 0.00 0.00 38.98 1.82
3087 10780 3.831911 ACACCAGATGTTACCCCAAAATG 59.168 43.478 0.00 0.00 38.98 2.32
3088 10781 3.831911 CACCAGATGTTACCCCAAAATGT 59.168 43.478 0.00 0.00 0.00 2.71
3089 10782 4.082245 CACCAGATGTTACCCCAAAATGTC 60.082 45.833 0.00 0.00 0.00 3.06
3090 10783 4.085733 CCAGATGTTACCCCAAAATGTCA 58.914 43.478 0.00 0.00 0.00 3.58
3091 10784 4.082245 CCAGATGTTACCCCAAAATGTCAC 60.082 45.833 0.00 0.00 0.00 3.67
3092 10785 4.766891 CAGATGTTACCCCAAAATGTCACT 59.233 41.667 0.00 0.00 0.00 3.41
3093 10786 5.010282 AGATGTTACCCCAAAATGTCACTC 58.990 41.667 0.00 0.00 0.00 3.51
3094 10787 4.447138 TGTTACCCCAAAATGTCACTCT 57.553 40.909 0.00 0.00 0.00 3.24
3095 10788 5.570205 TGTTACCCCAAAATGTCACTCTA 57.430 39.130 0.00 0.00 0.00 2.43
3096 10789 5.942961 TGTTACCCCAAAATGTCACTCTAA 58.057 37.500 0.00 0.00 0.00 2.10
3097 10790 6.366340 TGTTACCCCAAAATGTCACTCTAAA 58.634 36.000 0.00 0.00 0.00 1.85
3098 10791 7.007723 TGTTACCCCAAAATGTCACTCTAAAT 58.992 34.615 0.00 0.00 0.00 1.40
3099 10792 7.507616 TGTTACCCCAAAATGTCACTCTAAATT 59.492 33.333 0.00 0.00 0.00 1.82
3100 10793 6.994421 ACCCCAAAATGTCACTCTAAATTT 57.006 33.333 0.00 0.00 0.00 1.82
3101 10794 6.758254 ACCCCAAAATGTCACTCTAAATTTG 58.242 36.000 0.00 0.00 0.00 2.32
3102 10795 6.326323 ACCCCAAAATGTCACTCTAAATTTGT 59.674 34.615 0.00 0.00 0.00 2.83
3103 10796 7.147567 ACCCCAAAATGTCACTCTAAATTTGTT 60.148 33.333 0.00 0.00 0.00 2.83
3104 10797 7.714813 CCCCAAAATGTCACTCTAAATTTGTTT 59.285 33.333 0.00 0.00 0.00 2.83
3105 10798 9.108284 CCCAAAATGTCACTCTAAATTTGTTTT 57.892 29.630 0.00 0.00 0.00 2.43
3123 10816 3.526931 TTTTTCATCGGCAAAACACCA 57.473 38.095 0.00 0.00 0.00 4.17
3124 10817 2.500509 TTTCATCGGCAAAACACCAC 57.499 45.000 0.00 0.00 0.00 4.16
3125 10818 1.686355 TTCATCGGCAAAACACCACT 58.314 45.000 0.00 0.00 0.00 4.00
3126 10819 0.950836 TCATCGGCAAAACACCACTG 59.049 50.000 0.00 0.00 0.00 3.66
3127 10820 0.664166 CATCGGCAAAACACCACTGC 60.664 55.000 0.00 0.00 35.28 4.40
3128 10821 0.823356 ATCGGCAAAACACCACTGCT 60.823 50.000 0.00 0.00 36.32 4.24
3129 10822 1.008538 CGGCAAAACACCACTGCTC 60.009 57.895 0.00 0.00 36.32 4.26
3130 10823 1.363807 GGCAAAACACCACTGCTCC 59.636 57.895 0.00 0.00 36.32 4.70
3131 10824 1.008538 GCAAAACACCACTGCTCCG 60.009 57.895 0.00 0.00 33.20 4.63
3132 10825 1.724582 GCAAAACACCACTGCTCCGT 61.725 55.000 0.00 0.00 33.20 4.69
3133 10826 0.738389 CAAAACACCACTGCTCCGTT 59.262 50.000 0.00 0.00 0.00 4.44
3134 10827 1.134175 CAAAACACCACTGCTCCGTTT 59.866 47.619 0.00 0.00 0.00 3.60
3135 10828 1.021968 AAACACCACTGCTCCGTTTC 58.978 50.000 0.00 0.00 0.00 2.78
3136 10829 1.157870 AACACCACTGCTCCGTTTCG 61.158 55.000 0.00 0.00 0.00 3.46
3137 10830 2.665185 ACCACTGCTCCGTTTCGC 60.665 61.111 0.00 0.00 0.00 4.70
3138 10831 2.664851 CCACTGCTCCGTTTCGCA 60.665 61.111 0.00 0.00 34.54 5.10
3139 10832 2.034879 CCACTGCTCCGTTTCGCAT 61.035 57.895 0.00 0.00 35.32 4.73
3140 10833 1.133253 CACTGCTCCGTTTCGCATG 59.867 57.895 0.00 0.00 35.32 4.06
3141 10834 1.005037 ACTGCTCCGTTTCGCATGA 60.005 52.632 0.00 0.00 35.32 3.07
3142 10835 0.602638 ACTGCTCCGTTTCGCATGAA 60.603 50.000 0.00 0.00 35.32 2.57
3143 10836 0.516877 CTGCTCCGTTTCGCATGAAA 59.483 50.000 0.00 0.00 41.69 2.69
3144 10837 0.947960 TGCTCCGTTTCGCATGAAAA 59.052 45.000 0.00 0.00 45.22 2.29
3145 10838 1.539388 TGCTCCGTTTCGCATGAAAAT 59.461 42.857 0.00 0.00 45.22 1.82
3146 10839 2.030363 TGCTCCGTTTCGCATGAAAATT 60.030 40.909 0.00 0.00 45.22 1.82
3147 10840 2.986479 GCTCCGTTTCGCATGAAAATTT 59.014 40.909 0.00 0.00 45.22 1.82
3148 10841 3.428534 GCTCCGTTTCGCATGAAAATTTT 59.571 39.130 2.28 2.28 45.22 1.82
3149 10842 4.432892 GCTCCGTTTCGCATGAAAATTTTC 60.433 41.667 21.60 21.60 45.22 2.29
3162 10855 6.284475 TGAAAATTTTCAAGGATGTTTGCG 57.716 33.333 27.22 0.00 43.62 4.85
3163 10856 6.045318 TGAAAATTTTCAAGGATGTTTGCGA 58.955 32.000 27.22 2.89 43.62 5.10
3164 10857 5.905480 AAATTTTCAAGGATGTTTGCGAC 57.095 34.783 0.00 0.00 0.00 5.19
3165 10858 4.582701 ATTTTCAAGGATGTTTGCGACA 57.417 36.364 0.00 0.00 43.71 4.35
3166 10859 3.347958 TTTCAAGGATGTTTGCGACAC 57.652 42.857 0.00 0.00 42.04 3.67
3167 10860 2.254546 TCAAGGATGTTTGCGACACT 57.745 45.000 0.00 0.00 42.04 3.55
3168 10861 3.394674 TCAAGGATGTTTGCGACACTA 57.605 42.857 0.00 0.00 42.04 2.74
3169 10862 3.734463 TCAAGGATGTTTGCGACACTAA 58.266 40.909 0.00 0.00 42.04 2.24
3170 10863 3.496884 TCAAGGATGTTTGCGACACTAAC 59.503 43.478 0.00 0.00 42.04 2.34
3171 10864 3.120321 AGGATGTTTGCGACACTAACA 57.880 42.857 0.00 0.00 45.79 2.41
3176 10869 4.203950 TGTTTGCGACACTAACATGAAC 57.796 40.909 0.00 0.00 38.77 3.18
3177 10870 3.623510 TGTTTGCGACACTAACATGAACA 59.376 39.130 0.00 0.00 38.77 3.18
3178 10871 4.274705 TGTTTGCGACACTAACATGAACAT 59.725 37.500 0.00 0.00 38.77 2.71
3179 10872 4.661993 TTGCGACACTAACATGAACATC 57.338 40.909 0.00 0.00 0.00 3.06
3180 10873 3.925379 TGCGACACTAACATGAACATCT 58.075 40.909 0.00 0.00 0.00 2.90
3181 10874 5.066968 TGCGACACTAACATGAACATCTA 57.933 39.130 0.00 0.00 0.00 1.98
3182 10875 5.474825 TGCGACACTAACATGAACATCTAA 58.525 37.500 0.00 0.00 0.00 2.10
3183 10876 6.106003 TGCGACACTAACATGAACATCTAAT 58.894 36.000 0.00 0.00 0.00 1.73
3184 10877 6.593770 TGCGACACTAACATGAACATCTAATT 59.406 34.615 0.00 0.00 0.00 1.40
3185 10878 7.119997 GCGACACTAACATGAACATCTAATTC 58.880 38.462 0.00 0.00 0.00 2.17
3186 10879 7.201522 GCGACACTAACATGAACATCTAATTCA 60.202 37.037 0.00 0.00 40.25 2.57
3187 10880 8.323854 CGACACTAACATGAACATCTAATTCAG 58.676 37.037 0.00 0.00 39.36 3.02
3188 10881 9.371136 GACACTAACATGAACATCTAATTCAGA 57.629 33.333 0.00 0.00 39.36 3.27
3189 10882 9.725019 ACACTAACATGAACATCTAATTCAGAA 57.275 29.630 0.00 0.00 39.36 3.02
3235 10928 6.576662 TTTTTGTTTACTATTCATGCGGGA 57.423 33.333 0.00 0.00 0.00 5.14
3236 10929 5.554822 TTTGTTTACTATTCATGCGGGAC 57.445 39.130 0.00 0.00 0.00 4.46
3237 10930 3.537580 TGTTTACTATTCATGCGGGACC 58.462 45.455 0.00 0.00 0.00 4.46
3238 10931 2.519377 TTACTATTCATGCGGGACCG 57.481 50.000 6.35 6.35 43.09 4.79
3257 10950 2.672996 GCGCTTCTGGGAGCCAAA 60.673 61.111 0.00 0.00 39.51 3.28
3258 10951 2.268076 GCGCTTCTGGGAGCCAAAA 61.268 57.895 0.00 0.00 39.51 2.44
3259 10952 1.805428 GCGCTTCTGGGAGCCAAAAA 61.805 55.000 0.00 0.00 39.51 1.94
3260 10953 0.242017 CGCTTCTGGGAGCCAAAAAG 59.758 55.000 0.00 0.00 39.51 2.27
3261 10954 1.332195 GCTTCTGGGAGCCAAAAAGT 58.668 50.000 0.00 0.00 36.66 2.66
3262 10955 1.270826 GCTTCTGGGAGCCAAAAAGTC 59.729 52.381 0.00 0.00 36.66 3.01
3263 10956 2.586425 CTTCTGGGAGCCAAAAAGTCA 58.414 47.619 0.00 0.00 30.80 3.41
3264 10957 2.978156 TCTGGGAGCCAAAAAGTCAT 57.022 45.000 0.00 0.00 30.80 3.06
3265 10958 3.243359 TCTGGGAGCCAAAAAGTCATT 57.757 42.857 0.00 0.00 30.80 2.57
3266 10959 3.575805 TCTGGGAGCCAAAAAGTCATTT 58.424 40.909 0.00 0.00 30.80 2.32
3267 10960 3.573967 TCTGGGAGCCAAAAAGTCATTTC 59.426 43.478 0.00 0.00 30.80 2.17
3268 10961 3.303938 TGGGAGCCAAAAAGTCATTTCA 58.696 40.909 0.00 0.00 0.00 2.69
3269 10962 3.321682 TGGGAGCCAAAAAGTCATTTCAG 59.678 43.478 0.00 0.00 0.00 3.02
3270 10963 3.321968 GGGAGCCAAAAAGTCATTTCAGT 59.678 43.478 0.00 0.00 0.00 3.41
3271 10964 4.202253 GGGAGCCAAAAAGTCATTTCAGTT 60.202 41.667 0.00 0.00 0.00 3.16
3272 10965 5.359756 GGAGCCAAAAAGTCATTTCAGTTT 58.640 37.500 0.00 0.00 0.00 2.66
3273 10966 6.462347 GGGAGCCAAAAAGTCATTTCAGTTTA 60.462 38.462 0.00 0.00 0.00 2.01
3274 10967 6.420903 GGAGCCAAAAAGTCATTTCAGTTTAC 59.579 38.462 0.00 0.00 0.00 2.01
3275 10968 6.872920 AGCCAAAAAGTCATTTCAGTTTACA 58.127 32.000 0.00 0.00 0.00 2.41
3276 10969 7.500141 AGCCAAAAAGTCATTTCAGTTTACAT 58.500 30.769 0.00 0.00 0.00 2.29
3277 10970 7.653311 AGCCAAAAAGTCATTTCAGTTTACATC 59.347 33.333 0.00 0.00 0.00 3.06
3278 10971 7.653311 GCCAAAAAGTCATTTCAGTTTACATCT 59.347 33.333 0.00 0.00 0.00 2.90
3285 10978 9.739276 AGTCATTTCAGTTTACATCTATTTGGA 57.261 29.630 0.00 0.00 0.00 3.53
3299 10992 9.965902 ACATCTATTTGGAACTAAAGAATCAGT 57.034 29.630 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 89 7.857734 TTATAATGAATCTGCGAAAAGGTCA 57.142 32.000 0.00 0.00 0.00 4.02
119 122 9.665719 AAAGTTGTTGTTTCCATTTTTACAGAT 57.334 25.926 0.00 0.00 0.00 2.90
150 155 4.809193 AGTAAGCCAGATACAGAGATGGA 58.191 43.478 0.00 0.00 34.60 3.41
159 164 7.668525 ACAAACTTACAAGTAAGCCAGATAC 57.331 36.000 17.45 0.00 44.74 2.24
217 3556 6.389830 AGCACACAATTCAATGTCTAAACA 57.610 33.333 0.00 0.00 40.38 2.83
230 3569 4.095782 AGTGAACAACGTAAGCACACAATT 59.904 37.500 11.57 0.00 45.62 2.32
234 3573 3.181514 ACAAGTGAACAACGTAAGCACAC 60.182 43.478 11.57 10.08 45.62 3.82
238 3577 2.353579 ACCACAAGTGAACAACGTAAGC 59.646 45.455 0.94 0.00 45.62 3.09
259 3598 4.532126 ACCAGATAATTCACCAGACACTGA 59.468 41.667 0.00 0.00 32.44 3.41
270 3609 9.881649 GCATGAGATAAGATACCAGATAATTCA 57.118 33.333 0.00 0.00 0.00 2.57
296 3635 8.300286 AGTCCGTAGATCATACATGAACATAAG 58.700 37.037 0.00 0.00 40.69 1.73
317 3656 6.206498 TGATCGACAAATCTTGTATAGTCCG 58.794 40.000 0.00 0.00 45.52 4.79
319 3658 9.900710 ATACTGATCGACAAATCTTGTATAGTC 57.099 33.333 0.00 0.00 45.52 2.59
336 3681 9.376171 CTCTAATATAAGCGCTAATACTGATCG 57.624 37.037 12.05 0.00 0.00 3.69
416 3767 4.314121 TGCCAAGACCACAATATTTTTGC 58.686 39.130 0.00 0.00 0.00 3.68
431 3782 4.828939 AGTTGAAAAGTCATCATGCCAAGA 59.171 37.500 0.00 0.00 32.48 3.02
432 3783 4.921515 CAGTTGAAAAGTCATCATGCCAAG 59.078 41.667 0.00 0.00 32.48 3.61
433 3784 4.341806 ACAGTTGAAAAGTCATCATGCCAA 59.658 37.500 0.00 0.00 32.48 4.52
435 3786 4.217118 AGACAGTTGAAAAGTCATCATGCC 59.783 41.667 0.00 0.00 34.80 4.40
437 3788 7.664082 AGTAGACAGTTGAAAAGTCATCATG 57.336 36.000 0.00 0.00 34.80 3.07
438 3789 8.367911 TGTAGTAGACAGTTGAAAAGTCATCAT 58.632 33.333 0.00 0.00 34.80 2.45
439 3790 7.722363 TGTAGTAGACAGTTGAAAAGTCATCA 58.278 34.615 0.00 0.00 34.80 3.07
440 3791 8.488764 GTTGTAGTAGACAGTTGAAAAGTCATC 58.511 37.037 0.00 0.00 39.88 2.92
442 3793 7.324935 TGTTGTAGTAGACAGTTGAAAAGTCA 58.675 34.615 0.00 0.00 39.88 3.41
443 3794 7.766219 TGTTGTAGTAGACAGTTGAAAAGTC 57.234 36.000 0.00 0.00 39.88 3.01
446 3797 8.556213 AACTTGTTGTAGTAGACAGTTGAAAA 57.444 30.769 0.00 0.00 39.88 2.29
450 3801 6.687105 GCAAAACTTGTTGTAGTAGACAGTTG 59.313 38.462 0.00 0.00 39.88 3.16
451 3802 6.183360 GGCAAAACTTGTTGTAGTAGACAGTT 60.183 38.462 0.00 0.00 39.88 3.16
453 3804 5.277828 GGGCAAAACTTGTTGTAGTAGACAG 60.278 44.000 0.00 0.00 39.88 3.51
454 3805 4.577283 GGGCAAAACTTGTTGTAGTAGACA 59.423 41.667 0.00 0.00 35.78 3.41
455 3806 4.319261 CGGGCAAAACTTGTTGTAGTAGAC 60.319 45.833 0.00 0.00 0.00 2.59
456 3807 3.810941 CGGGCAAAACTTGTTGTAGTAGA 59.189 43.478 0.00 0.00 0.00 2.59
457 3808 3.058501 CCGGGCAAAACTTGTTGTAGTAG 60.059 47.826 0.00 0.00 0.00 2.57
458 3809 2.879646 CCGGGCAAAACTTGTTGTAGTA 59.120 45.455 0.00 0.00 0.00 1.82
459 3810 1.679153 CCGGGCAAAACTTGTTGTAGT 59.321 47.619 0.00 0.00 0.00 2.73
460 3811 1.601914 GCCGGGCAAAACTTGTTGTAG 60.602 52.381 15.62 0.00 0.00 2.74
461 3812 0.386113 GCCGGGCAAAACTTGTTGTA 59.614 50.000 15.62 0.00 0.00 2.41
462 3813 1.142965 GCCGGGCAAAACTTGTTGT 59.857 52.632 15.62 0.00 0.00 3.32
463 3814 0.597377 GAGCCGGGCAAAACTTGTTG 60.597 55.000 23.09 0.00 0.00 3.33
466 3817 1.172180 TCAGAGCCGGGCAAAACTTG 61.172 55.000 23.09 9.58 0.00 3.16
467 3818 0.251341 ATCAGAGCCGGGCAAAACTT 60.251 50.000 23.09 0.00 0.00 2.66
468 3819 0.962356 CATCAGAGCCGGGCAAAACT 60.962 55.000 23.09 11.60 0.00 2.66
469 3820 0.960364 TCATCAGAGCCGGGCAAAAC 60.960 55.000 23.09 9.43 0.00 2.43
470 3821 0.677731 CTCATCAGAGCCGGGCAAAA 60.678 55.000 23.09 3.70 34.61 2.44
471 3822 1.078214 CTCATCAGAGCCGGGCAAA 60.078 57.895 23.09 3.31 34.61 3.68
472 3823 2.586245 CTCATCAGAGCCGGGCAA 59.414 61.111 23.09 3.71 34.61 4.52
473 3824 3.473647 CCTCATCAGAGCCGGGCA 61.474 66.667 23.09 0.00 40.68 5.36
474 3825 4.247380 CCCTCATCAGAGCCGGGC 62.247 72.222 12.11 12.11 40.68 6.13
475 3826 2.444706 TCCCTCATCAGAGCCGGG 60.445 66.667 2.18 0.00 40.68 5.73
476 3827 2.506061 CCTCCCTCATCAGAGCCGG 61.506 68.421 0.00 0.00 40.68 6.13
477 3828 2.506061 CCCTCCCTCATCAGAGCCG 61.506 68.421 0.00 0.00 40.68 5.52
478 3829 2.146061 CCCCTCCCTCATCAGAGCC 61.146 68.421 0.00 0.00 40.68 4.70
479 3830 2.817056 GCCCCTCCCTCATCAGAGC 61.817 68.421 0.00 0.00 40.68 4.09
480 3831 2.506061 CGCCCCTCCCTCATCAGAG 61.506 68.421 0.00 0.00 41.72 3.35
481 3832 2.317992 ATCGCCCCTCCCTCATCAGA 62.318 60.000 0.00 0.00 0.00 3.27
482 3833 1.840650 ATCGCCCCTCCCTCATCAG 60.841 63.158 0.00 0.00 0.00 2.90
483 3834 2.142761 CATCGCCCCTCCCTCATCA 61.143 63.158 0.00 0.00 0.00 3.07
484 3835 1.197430 ATCATCGCCCCTCCCTCATC 61.197 60.000 0.00 0.00 0.00 2.92
485 3836 1.151943 ATCATCGCCCCTCCCTCAT 60.152 57.895 0.00 0.00 0.00 2.90
486 3837 2.142761 CATCATCGCCCCTCCCTCA 61.143 63.158 0.00 0.00 0.00 3.86
487 3838 2.746359 CATCATCGCCCCTCCCTC 59.254 66.667 0.00 0.00 0.00 4.30
488 3839 2.851102 CCATCATCGCCCCTCCCT 60.851 66.667 0.00 0.00 0.00 4.20
489 3840 4.650377 GCCATCATCGCCCCTCCC 62.650 72.222 0.00 0.00 0.00 4.30
490 3841 4.996434 CGCCATCATCGCCCCTCC 62.996 72.222 0.00 0.00 0.00 4.30
491 3842 4.996434 CCGCCATCATCGCCCCTC 62.996 72.222 0.00 0.00 0.00 4.30
516 3867 0.946221 AACACTGAAGCGAGCCGAAG 60.946 55.000 0.00 0.00 0.00 3.79
517 3868 0.531974 AAACACTGAAGCGAGCCGAA 60.532 50.000 0.00 0.00 0.00 4.30
518 3869 1.069090 AAACACTGAAGCGAGCCGA 59.931 52.632 0.00 0.00 0.00 5.54
519 3870 1.205064 CAAACACTGAAGCGAGCCG 59.795 57.895 0.00 0.00 0.00 5.52
520 3871 1.461127 CTACAAACACTGAAGCGAGCC 59.539 52.381 0.00 0.00 0.00 4.70
521 3872 2.135933 ACTACAAACACTGAAGCGAGC 58.864 47.619 0.00 0.00 0.00 5.03
522 3873 2.405357 CGACTACAAACACTGAAGCGAG 59.595 50.000 0.00 0.00 0.00 5.03
523 3874 2.223641 ACGACTACAAACACTGAAGCGA 60.224 45.455 0.00 0.00 0.00 4.93
524 3875 2.124903 ACGACTACAAACACTGAAGCG 58.875 47.619 0.00 0.00 0.00 4.68
525 3876 2.153247 CGACGACTACAAACACTGAAGC 59.847 50.000 0.00 0.00 0.00 3.86
526 3877 3.369385 ACGACGACTACAAACACTGAAG 58.631 45.455 0.00 0.00 0.00 3.02
527 3878 3.425577 ACGACGACTACAAACACTGAA 57.574 42.857 0.00 0.00 0.00 3.02
528 3879 3.425577 AACGACGACTACAAACACTGA 57.574 42.857 0.00 0.00 0.00 3.41
529 3880 3.667261 CCTAACGACGACTACAAACACTG 59.333 47.826 0.00 0.00 0.00 3.66
530 3881 3.316308 ACCTAACGACGACTACAAACACT 59.684 43.478 0.00 0.00 0.00 3.55
531 3882 3.423206 CACCTAACGACGACTACAAACAC 59.577 47.826 0.00 0.00 0.00 3.32
532 3883 3.550639 CCACCTAACGACGACTACAAACA 60.551 47.826 0.00 0.00 0.00 2.83
542 3893 0.097674 CCGTAGACCACCTAACGACG 59.902 60.000 0.00 0.00 33.84 5.12
543 3894 1.453155 TCCGTAGACCACCTAACGAC 58.547 55.000 0.00 0.00 0.00 4.34
544 3895 2.425143 ATCCGTAGACCACCTAACGA 57.575 50.000 0.00 0.00 0.00 3.85
546 3897 2.684881 TCGAATCCGTAGACCACCTAAC 59.315 50.000 0.00 0.00 37.05 2.34
547 3898 3.003394 TCGAATCCGTAGACCACCTAA 57.997 47.619 0.00 0.00 37.05 2.69
548 3899 2.715749 TCGAATCCGTAGACCACCTA 57.284 50.000 0.00 0.00 37.05 3.08
551 3902 6.839820 ATTAAATTCGAATCCGTAGACCAC 57.160 37.500 11.83 0.00 37.05 4.16
581 3932 9.647797 ACAACAGTATAACGAACATCAGAAATA 57.352 29.630 0.00 0.00 0.00 1.40
582 3933 8.443160 CACAACAGTATAACGAACATCAGAAAT 58.557 33.333 0.00 0.00 0.00 2.17
583 3934 7.654116 TCACAACAGTATAACGAACATCAGAAA 59.346 33.333 0.00 0.00 0.00 2.52
584 3935 7.149307 TCACAACAGTATAACGAACATCAGAA 58.851 34.615 0.00 0.00 0.00 3.02
585 3936 6.683715 TCACAACAGTATAACGAACATCAGA 58.316 36.000 0.00 0.00 0.00 3.27
586 3937 6.944557 TCACAACAGTATAACGAACATCAG 57.055 37.500 0.00 0.00 0.00 2.90
587 3938 7.899178 AATCACAACAGTATAACGAACATCA 57.101 32.000 0.00 0.00 0.00 3.07
590 3941 9.478768 TCTTTAATCACAACAGTATAACGAACA 57.521 29.630 0.00 0.00 0.00 3.18
593 3944 9.863845 TCATCTTTAATCACAACAGTATAACGA 57.136 29.630 0.00 0.00 0.00 3.85
612 3963 8.411683 GGCAAAACATCTGATCTATTCATCTTT 58.588 33.333 0.00 0.00 32.72 2.52
613 3964 7.255035 CGGCAAAACATCTGATCTATTCATCTT 60.255 37.037 0.00 0.00 32.72 2.40
614 3965 6.204301 CGGCAAAACATCTGATCTATTCATCT 59.796 38.462 0.00 0.00 32.72 2.90
615 3966 6.369005 CGGCAAAACATCTGATCTATTCATC 58.631 40.000 0.00 0.00 32.72 2.92
616 3967 5.240183 CCGGCAAAACATCTGATCTATTCAT 59.760 40.000 0.00 0.00 32.72 2.57
617 3968 4.576053 CCGGCAAAACATCTGATCTATTCA 59.424 41.667 0.00 0.00 0.00 2.57
618 3969 4.816385 TCCGGCAAAACATCTGATCTATTC 59.184 41.667 0.00 0.00 0.00 1.75
619 3970 4.780815 TCCGGCAAAACATCTGATCTATT 58.219 39.130 0.00 0.00 0.00 1.73
620 3971 4.422073 TCCGGCAAAACATCTGATCTAT 57.578 40.909 0.00 0.00 0.00 1.98
621 3972 3.904800 TCCGGCAAAACATCTGATCTA 57.095 42.857 0.00 0.00 0.00 1.98
622 3973 2.787473 TCCGGCAAAACATCTGATCT 57.213 45.000 0.00 0.00 0.00 2.75
623 3974 3.848272 TTTCCGGCAAAACATCTGATC 57.152 42.857 0.00 0.00 0.00 2.92
624 3975 4.599047 TTTTTCCGGCAAAACATCTGAT 57.401 36.364 7.98 0.00 33.47 2.90
644 3995 6.112734 GGGGATTTGAAACAGTTGAGTTTTT 58.887 36.000 0.00 0.00 41.48 1.94
645 3996 5.188751 TGGGGATTTGAAACAGTTGAGTTTT 59.811 36.000 0.00 0.00 41.48 2.43
646 3997 4.714308 TGGGGATTTGAAACAGTTGAGTTT 59.286 37.500 0.00 0.00 43.90 2.66
697 4133 2.897969 GGAAGTGGAAGTGAGTAGGTGA 59.102 50.000 0.00 0.00 0.00 4.02
762 4199 1.506262 CGGGAATGTTTCGGCCAAG 59.494 57.895 2.24 0.00 0.00 3.61
768 4205 1.211709 GTTGGGCGGGAATGTTTCG 59.788 57.895 0.00 0.00 0.00 3.46
789 4226 1.541147 CTTTCGGAGCAGCATCCAAAA 59.459 47.619 10.44 4.85 39.53 2.44
802 4239 1.004560 CTCAGGTGCAGCTTTCGGA 60.005 57.895 17.45 9.59 0.00 4.55
830 4272 3.949754 ACCTGGTCTGCATGTCATTAATG 59.050 43.478 9.29 9.29 0.00 1.90
833 4275 2.356022 CCACCTGGTCTGCATGTCATTA 60.356 50.000 0.00 0.00 0.00 1.90
860 4302 2.225791 TAGTAGTGGCTGGCTGCACG 62.226 60.000 18.32 0.00 45.15 5.34
895 4348 2.891580 AGTGTGTGTCTAAGTGATCCGT 59.108 45.455 0.00 0.00 0.00 4.69
908 4363 3.134623 TGAATCTTCAGGTGAGTGTGTGT 59.865 43.478 0.00 0.00 32.50 3.72
909 4364 3.496130 GTGAATCTTCAGGTGAGTGTGTG 59.504 47.826 0.00 0.00 37.98 3.82
919 4374 5.471456 ACTTAGTTGCTTGTGAATCTTCAGG 59.529 40.000 0.00 0.00 37.98 3.86
956 4415 1.536766 ACTTGCTGCACGTACGTACTA 59.463 47.619 22.34 9.28 0.00 1.82
1158 4621 2.178580 CTCCTGAGCTTCTCCTTGAGT 58.821 52.381 0.00 0.00 0.00 3.41
1175 4638 4.888239 TGGTAGTAGCAGTACAGATTCTCC 59.112 45.833 0.00 0.00 0.00 3.71
1195 4658 3.697045 TGACGTCCAAAAAGAAACATGGT 59.303 39.130 14.12 0.00 34.50 3.55
1197 4660 4.204168 CGTTGACGTCCAAAAAGAAACATG 59.796 41.667 14.12 0.00 36.36 3.21
1289 8684 2.556622 GGATTTTTCGCCTGGAAGAACA 59.443 45.455 0.00 0.00 35.70 3.18
1290 8685 2.414161 CGGATTTTTCGCCTGGAAGAAC 60.414 50.000 0.00 0.00 35.70 3.01
1291 8686 1.810151 CGGATTTTTCGCCTGGAAGAA 59.190 47.619 0.00 0.00 35.70 2.52
1292 8687 1.448985 CGGATTTTTCGCCTGGAAGA 58.551 50.000 0.00 0.00 35.70 2.87
1293 8688 0.451783 CCGGATTTTTCGCCTGGAAG 59.548 55.000 0.00 0.00 35.70 3.46
1482 8888 4.388499 GTGGGTGATGTCGGCGGT 62.388 66.667 7.21 0.00 0.00 5.68
1980 9386 2.809601 GTCGTCGACAATGGCGCT 60.810 61.111 20.28 0.00 32.09 5.92
2105 9523 5.009631 AGCATCAGCACCTTGTTTATGTTA 58.990 37.500 0.00 0.00 45.49 2.41
2471 9898 1.637338 AGGTGCATGACTGACAGAGA 58.363 50.000 10.08 0.00 0.00 3.10
2683 10372 5.066505 CCACAAATAACCTAACCATCTGAGC 59.933 44.000 0.00 0.00 0.00 4.26
2711 10400 2.285818 AATCCCGGTGGGCTGGTA 60.286 61.111 0.00 0.00 43.94 3.25
2723 10412 2.772515 AGCACCTAACTAGGACAATCCC 59.227 50.000 9.83 0.00 46.63 3.85
2765 10454 0.320374 AACATCGCCCGAAAGACTGA 59.680 50.000 0.00 0.00 0.00 3.41
2775 10464 0.098728 CCATTGAACGAACATCGCCC 59.901 55.000 0.00 0.00 45.12 6.13
2786 10475 2.474410 AACGTCTCCTCCCATTGAAC 57.526 50.000 0.00 0.00 0.00 3.18
2951 10640 1.681780 GGGAGCATGAACGGATTTCCA 60.682 52.381 0.00 0.00 35.14 3.53
3034 10727 4.757594 TGCACAGGCCAAAATATTTCATC 58.242 39.130 5.01 0.00 40.13 2.92
3035 10728 4.822685 TGCACAGGCCAAAATATTTCAT 57.177 36.364 5.01 0.00 40.13 2.57
3036 10729 4.613925 TTGCACAGGCCAAAATATTTCA 57.386 36.364 5.01 0.00 40.13 2.69
3037 10730 5.938438 TTTTGCACAGGCCAAAATATTTC 57.062 34.783 5.01 0.00 40.13 2.17
3065 10758 3.603965 TTTTGGGGTAACATCTGGTGT 57.396 42.857 0.00 0.00 44.84 4.16
3066 10759 3.831911 ACATTTTGGGGTAACATCTGGTG 59.168 43.478 0.00 0.00 39.74 4.17
3067 10760 4.086457 GACATTTTGGGGTAACATCTGGT 58.914 43.478 0.00 0.00 39.74 4.00
3068 10761 4.082245 GTGACATTTTGGGGTAACATCTGG 60.082 45.833 0.00 0.00 39.74 3.86
3069 10762 4.766891 AGTGACATTTTGGGGTAACATCTG 59.233 41.667 0.00 0.00 39.74 2.90
3070 10763 4.998051 AGTGACATTTTGGGGTAACATCT 58.002 39.130 0.00 0.00 39.74 2.90
3071 10764 5.010282 AGAGTGACATTTTGGGGTAACATC 58.990 41.667 0.00 0.00 39.74 3.06
3072 10765 4.998051 AGAGTGACATTTTGGGGTAACAT 58.002 39.130 0.00 0.00 39.74 2.71
3073 10766 4.447138 AGAGTGACATTTTGGGGTAACA 57.553 40.909 0.00 0.00 39.74 2.41
3074 10767 6.887626 TTTAGAGTGACATTTTGGGGTAAC 57.112 37.500 0.00 0.00 0.00 2.50
3075 10768 8.364142 CAAATTTAGAGTGACATTTTGGGGTAA 58.636 33.333 0.00 0.00 0.00 2.85
3076 10769 7.507616 ACAAATTTAGAGTGACATTTTGGGGTA 59.492 33.333 0.00 0.00 0.00 3.69
3077 10770 6.326323 ACAAATTTAGAGTGACATTTTGGGGT 59.674 34.615 0.00 0.00 0.00 4.95
3078 10771 6.758254 ACAAATTTAGAGTGACATTTTGGGG 58.242 36.000 0.00 0.00 0.00 4.96
3079 10772 8.661352 AAACAAATTTAGAGTGACATTTTGGG 57.339 30.769 0.00 0.00 0.00 4.12
3103 10796 3.118956 AGTGGTGTTTTGCCGATGAAAAA 60.119 39.130 0.00 0.00 0.00 1.94
3104 10797 2.428890 AGTGGTGTTTTGCCGATGAAAA 59.571 40.909 0.00 0.00 0.00 2.29
3105 10798 2.028130 AGTGGTGTTTTGCCGATGAAA 58.972 42.857 0.00 0.00 0.00 2.69
3106 10799 1.336440 CAGTGGTGTTTTGCCGATGAA 59.664 47.619 0.00 0.00 0.00 2.57
3107 10800 0.950836 CAGTGGTGTTTTGCCGATGA 59.049 50.000 0.00 0.00 0.00 2.92
3108 10801 0.664166 GCAGTGGTGTTTTGCCGATG 60.664 55.000 0.00 0.00 31.79 3.84
3109 10802 0.823356 AGCAGTGGTGTTTTGCCGAT 60.823 50.000 0.00 0.00 38.58 4.18
3110 10803 1.444119 GAGCAGTGGTGTTTTGCCGA 61.444 55.000 0.00 0.00 38.58 5.54
3111 10804 1.008538 GAGCAGTGGTGTTTTGCCG 60.009 57.895 0.00 0.00 38.58 5.69
3112 10805 1.363807 GGAGCAGTGGTGTTTTGCC 59.636 57.895 0.00 0.00 38.58 4.52
3113 10806 1.008538 CGGAGCAGTGGTGTTTTGC 60.009 57.895 0.00 0.00 38.09 3.68
3114 10807 0.738389 AACGGAGCAGTGGTGTTTTG 59.262 50.000 0.00 0.00 0.00 2.44
3115 10808 1.404035 GAAACGGAGCAGTGGTGTTTT 59.596 47.619 0.00 0.00 33.27 2.43
3116 10809 1.021968 GAAACGGAGCAGTGGTGTTT 58.978 50.000 9.73 9.73 35.61 2.83
3117 10810 1.157870 CGAAACGGAGCAGTGGTGTT 61.158 55.000 0.00 0.00 0.00 3.32
3118 10811 1.594293 CGAAACGGAGCAGTGGTGT 60.594 57.895 0.00 0.00 0.00 4.16
3119 10812 2.954753 GCGAAACGGAGCAGTGGTG 61.955 63.158 0.00 0.00 0.00 4.17
3120 10813 2.665185 GCGAAACGGAGCAGTGGT 60.665 61.111 0.00 0.00 0.00 4.16
3121 10814 2.664851 TGCGAAACGGAGCAGTGG 60.665 61.111 0.00 0.00 38.59 4.00
3126 10819 2.262572 ATTTTCATGCGAAACGGAGC 57.737 45.000 0.00 0.00 40.84 4.70
3127 10820 4.679197 TGAAAATTTTCATGCGAAACGGAG 59.321 37.500 26.01 0.00 41.88 4.63
3128 10821 4.611943 TGAAAATTTTCATGCGAAACGGA 58.388 34.783 26.01 2.75 41.88 4.69
3129 10822 4.963237 TGAAAATTTTCATGCGAAACGG 57.037 36.364 26.01 0.00 41.88 4.44
3130 10823 5.174761 TCCTTGAAAATTTTCATGCGAAACG 59.825 36.000 29.13 18.12 45.65 3.60
3131 10824 6.523676 TCCTTGAAAATTTTCATGCGAAAC 57.476 33.333 29.13 4.29 45.65 2.78
3132 10825 6.705381 ACATCCTTGAAAATTTTCATGCGAAA 59.295 30.769 29.13 15.28 45.65 3.46
3133 10826 6.222389 ACATCCTTGAAAATTTTCATGCGAA 58.778 32.000 29.13 19.51 45.65 4.70
3134 10827 5.782047 ACATCCTTGAAAATTTTCATGCGA 58.218 33.333 29.13 25.94 45.65 5.10
3135 10828 6.470557 AACATCCTTGAAAATTTTCATGCG 57.529 33.333 29.13 22.89 45.65 4.73
3136 10829 6.579666 GCAAACATCCTTGAAAATTTTCATGC 59.420 34.615 29.13 26.51 45.65 4.06
3137 10830 6.793203 CGCAAACATCCTTGAAAATTTTCATG 59.207 34.615 29.13 28.31 45.65 3.07
3138 10831 6.705381 TCGCAAACATCCTTGAAAATTTTCAT 59.295 30.769 29.13 15.03 45.65 2.57
3139 10832 6.019156 GTCGCAAACATCCTTGAAAATTTTCA 60.019 34.615 26.01 26.01 44.78 2.69
3140 10833 6.019156 TGTCGCAAACATCCTTGAAAATTTTC 60.019 34.615 21.60 21.60 33.60 2.29
3141 10834 5.814705 TGTCGCAAACATCCTTGAAAATTTT 59.185 32.000 2.28 2.28 31.20 1.82
3142 10835 5.234116 GTGTCGCAAACATCCTTGAAAATTT 59.766 36.000 0.00 0.00 40.80 1.82
3143 10836 4.744631 GTGTCGCAAACATCCTTGAAAATT 59.255 37.500 0.00 0.00 40.80 1.82
3144 10837 4.037923 AGTGTCGCAAACATCCTTGAAAAT 59.962 37.500 0.00 0.00 40.80 1.82
3145 10838 3.380004 AGTGTCGCAAACATCCTTGAAAA 59.620 39.130 0.00 0.00 40.80 2.29
3146 10839 2.948979 AGTGTCGCAAACATCCTTGAAA 59.051 40.909 0.00 0.00 40.80 2.69
3147 10840 2.571212 AGTGTCGCAAACATCCTTGAA 58.429 42.857 0.00 0.00 40.80 2.69
3148 10841 2.254546 AGTGTCGCAAACATCCTTGA 57.745 45.000 0.00 0.00 40.80 3.02
3149 10842 3.249799 TGTTAGTGTCGCAAACATCCTTG 59.750 43.478 0.00 0.00 40.80 3.61
3150 10843 3.472652 TGTTAGTGTCGCAAACATCCTT 58.527 40.909 0.00 0.00 40.80 3.36
3151 10844 3.120321 TGTTAGTGTCGCAAACATCCT 57.880 42.857 0.00 0.00 40.80 3.24
3152 10845 3.435327 TCATGTTAGTGTCGCAAACATCC 59.565 43.478 0.00 0.00 40.83 3.51
3153 10846 4.661993 TCATGTTAGTGTCGCAAACATC 57.338 40.909 0.00 0.00 40.83 3.06
3154 10847 4.274705 TGTTCATGTTAGTGTCGCAAACAT 59.725 37.500 0.00 0.00 42.91 2.71
3155 10848 3.623510 TGTTCATGTTAGTGTCGCAAACA 59.376 39.130 0.00 0.00 37.51 2.83
3156 10849 4.203950 TGTTCATGTTAGTGTCGCAAAC 57.796 40.909 0.00 0.00 0.00 2.93
3157 10850 4.754618 AGATGTTCATGTTAGTGTCGCAAA 59.245 37.500 0.00 0.00 0.00 3.68
3158 10851 4.314961 AGATGTTCATGTTAGTGTCGCAA 58.685 39.130 0.00 0.00 0.00 4.85
3159 10852 3.925379 AGATGTTCATGTTAGTGTCGCA 58.075 40.909 0.00 0.00 0.00 5.10
3160 10853 6.589830 ATTAGATGTTCATGTTAGTGTCGC 57.410 37.500 0.00 0.00 0.00 5.19
3161 10854 8.185003 TGAATTAGATGTTCATGTTAGTGTCG 57.815 34.615 0.00 0.00 31.07 4.35
3162 10855 9.371136 TCTGAATTAGATGTTCATGTTAGTGTC 57.629 33.333 0.00 0.00 35.26 3.67
3163 10856 9.725019 TTCTGAATTAGATGTTCATGTTAGTGT 57.275 29.630 0.00 0.00 35.26 3.55
3212 10905 6.383415 GTCCCGCATGAATAGTAAACAAAAA 58.617 36.000 0.00 0.00 0.00 1.94
3213 10906 5.106078 GGTCCCGCATGAATAGTAAACAAAA 60.106 40.000 0.00 0.00 0.00 2.44
3214 10907 4.396790 GGTCCCGCATGAATAGTAAACAAA 59.603 41.667 0.00 0.00 0.00 2.83
3215 10908 3.942748 GGTCCCGCATGAATAGTAAACAA 59.057 43.478 0.00 0.00 0.00 2.83
3216 10909 3.537580 GGTCCCGCATGAATAGTAAACA 58.462 45.455 0.00 0.00 0.00 2.83
3217 10910 2.542595 CGGTCCCGCATGAATAGTAAAC 59.457 50.000 0.00 0.00 0.00 2.01
3218 10911 2.828877 CGGTCCCGCATGAATAGTAAA 58.171 47.619 0.00 0.00 0.00 2.01
3219 10912 2.519377 CGGTCCCGCATGAATAGTAA 57.481 50.000 0.00 0.00 0.00 2.24
3240 10933 1.805428 TTTTTGGCTCCCAGAAGCGC 61.805 55.000 0.00 0.00 43.45 5.92
3241 10934 0.242017 CTTTTTGGCTCCCAGAAGCG 59.758 55.000 0.00 0.00 43.45 4.68
3242 10935 1.270826 GACTTTTTGGCTCCCAGAAGC 59.729 52.381 8.47 0.00 41.73 3.86
3243 10936 2.586425 TGACTTTTTGGCTCCCAGAAG 58.414 47.619 7.49 7.49 35.81 2.85
3244 10937 2.746279 TGACTTTTTGGCTCCCAGAA 57.254 45.000 0.00 0.00 33.81 3.02
3245 10938 2.978156 ATGACTTTTTGGCTCCCAGA 57.022 45.000 0.00 0.00 33.81 3.86
3246 10939 3.321682 TGAAATGACTTTTTGGCTCCCAG 59.678 43.478 0.00 0.00 33.81 4.45
3247 10940 3.303938 TGAAATGACTTTTTGGCTCCCA 58.696 40.909 0.00 0.00 0.00 4.37
3248 10941 3.321968 ACTGAAATGACTTTTTGGCTCCC 59.678 43.478 0.00 0.00 0.00 4.30
3249 10942 4.590850 ACTGAAATGACTTTTTGGCTCC 57.409 40.909 0.00 0.00 0.00 4.70
3250 10943 6.978080 TGTAAACTGAAATGACTTTTTGGCTC 59.022 34.615 0.00 0.00 0.00 4.70
3251 10944 6.872920 TGTAAACTGAAATGACTTTTTGGCT 58.127 32.000 0.00 0.00 0.00 4.75
3252 10945 7.653311 AGATGTAAACTGAAATGACTTTTTGGC 59.347 33.333 0.00 0.00 0.00 4.52
3259 10952 9.739276 TCCAAATAGATGTAAACTGAAATGACT 57.261 29.630 0.00 0.00 0.00 3.41
3273 10966 9.965902 ACTGATTCTTTAGTTCCAAATAGATGT 57.034 29.630 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.