Multiple sequence alignment - TraesCS5A01G525700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G525700 chr5A 100.000 4812 0 0 1 4812 685964443 685959632 0.000000e+00 8887
1 TraesCS5A01G525700 chr5A 89.474 247 23 3 1522 1766 564772506 564772261 4.680000e-80 309
2 TraesCS5A01G525700 chr4B 88.279 2841 216 55 1909 4671 646924243 646921442 0.000000e+00 3293
3 TraesCS5A01G525700 chr4B 88.702 832 53 19 631 1447 646925215 646924410 0.000000e+00 977
4 TraesCS5A01G525700 chr4B 84.564 745 68 18 3409 4132 646920595 646919877 0.000000e+00 695
5 TraesCS5A01G525700 chr4B 90.730 507 40 5 4170 4671 646919877 646919373 0.000000e+00 669
6 TraesCS5A01G525700 chr4D 89.176 1783 113 33 2969 4713 502559598 502557858 0.000000e+00 2150
7 TraesCS5A01G525700 chr4D 82.512 1218 123 39 1763 2942 502560817 502559652 0.000000e+00 987
8 TraesCS5A01G525700 chr4D 86.558 796 65 27 661 1447 502561569 502560807 0.000000e+00 839
9 TraesCS5A01G525700 chr5D 98.574 631 9 0 1 631 487563675 487564305 0.000000e+00 1116
10 TraesCS5A01G525700 chr4A 98.415 631 10 0 1 631 475387505 475386875 0.000000e+00 1110
11 TraesCS5A01G525700 chrUn 98.098 631 12 0 1 631 328338328 328337698 0.000000e+00 1099
12 TraesCS5A01G525700 chr2D 91.969 635 35 6 1 631 634815013 634814391 0.000000e+00 876
13 TraesCS5A01G525700 chr2D 91.181 635 40 6 1 631 634828293 634827671 0.000000e+00 848
14 TraesCS5A01G525700 chr2D 90.871 241 18 4 1522 1759 564703979 564704218 2.160000e-83 320
15 TraesCS5A01G525700 chr1B 79.006 624 124 6 12 631 570854033 570853413 2.070000e-113 420
16 TraesCS5A01G525700 chr7A 92.083 240 17 1 1522 1759 596689927 596690166 2.150000e-88 337
17 TraesCS5A01G525700 chr5B 91.736 242 16 4 1523 1763 521137910 521137672 2.780000e-87 333
18 TraesCS5A01G525700 chr5B 91.429 245 15 5 1522 1763 524643121 524643362 9.980000e-87 331
19 TraesCS5A01G525700 chr3D 90.909 242 18 4 1522 1759 6302466 6302707 6.010000e-84 322
20 TraesCS5A01G525700 chr1D 90.283 247 17 2 1522 1761 33857416 33857662 2.800000e-82 316
21 TraesCS5A01G525700 chr3A 90.000 240 20 4 1522 1760 730356948 730357184 1.680000e-79 307
22 TraesCS5A01G525700 chr3B 89.540 239 23 2 1522 1759 544546018 544546255 7.830000e-78 302
23 TraesCS5A01G525700 chr1A 77.676 327 56 14 1066 1384 341017538 341017221 2.960000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G525700 chr5A 685959632 685964443 4811 True 8887.000000 8887 100.00000 1 4812 1 chr5A.!!$R2 4811
1 TraesCS5A01G525700 chr4B 646919373 646925215 5842 True 1408.500000 3293 88.06875 631 4671 4 chr4B.!!$R1 4040
2 TraesCS5A01G525700 chr4D 502557858 502561569 3711 True 1325.333333 2150 86.08200 661 4713 3 chr4D.!!$R1 4052
3 TraesCS5A01G525700 chr5D 487563675 487564305 630 False 1116.000000 1116 98.57400 1 631 1 chr5D.!!$F1 630
4 TraesCS5A01G525700 chr4A 475386875 475387505 630 True 1110.000000 1110 98.41500 1 631 1 chr4A.!!$R1 630
5 TraesCS5A01G525700 chrUn 328337698 328338328 630 True 1099.000000 1099 98.09800 1 631 1 chrUn.!!$R1 630
6 TraesCS5A01G525700 chr2D 634814391 634815013 622 True 876.000000 876 91.96900 1 631 1 chr2D.!!$R1 630
7 TraesCS5A01G525700 chr2D 634827671 634828293 622 True 848.000000 848 91.18100 1 631 1 chr2D.!!$R2 630
8 TraesCS5A01G525700 chr1B 570853413 570854033 620 True 420.000000 420 79.00600 12 631 1 chr1B.!!$R1 619

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 878 0.179073 CAACCCGATTCTCCGCATCT 60.179 55.0 0.00 0.0 0.00 2.90 F
1271 1290 0.031721 GGTTCGTTGACGGTGACTCT 59.968 55.0 3.48 0.0 40.29 3.24 F
1736 1758 0.032912 TCGTATAGGGGTGTGGAGCA 60.033 55.0 0.00 0.0 0.00 4.26 F
2702 2784 0.037882 CCAGCTCGCATACCGATGAT 60.038 55.0 0.00 0.0 46.31 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1717 1739 0.032912 TGCTCCACACCCCTATACGA 60.033 55.0 0.00 0.0 0.00 3.43 R
2289 2363 0.034767 CTCCAGCCAGAATTCCTGCA 60.035 55.0 16.48 0.0 41.57 4.41 R
2705 2787 0.810648 TTTTGCCAGCGTCCATGATC 59.189 50.0 0.00 0.0 0.00 2.92 R
4634 6866 0.174617 CTCTCGGCCCTCTCTGTTTC 59.825 60.0 0.00 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
249 250 5.481615 AACATCCCCTGGGTATTATGTTT 57.518 39.130 19.23 9.74 36.32 2.83
529 540 1.003580 ACATCCCAACTCTGATTGCGT 59.996 47.619 0.00 0.00 0.00 5.24
544 555 4.694982 TGATTGCGTCATGTGTATTTGTCT 59.305 37.500 0.00 0.00 0.00 3.41
555 567 4.225042 TGTGTATTTGTCTCCCACATAGCT 59.775 41.667 0.00 0.00 33.90 3.32
614 626 8.415950 TCTAAAATTCTCCATTTGGCTTTGTA 57.584 30.769 0.00 0.00 35.09 2.41
656 668 3.955524 TTGAAAGGGGGTTTAGTGACA 57.044 42.857 0.00 0.00 0.00 3.58
666 678 4.202326 GGGGTTTAGTGACAGAAGAAGTGA 60.202 45.833 0.00 0.00 0.00 3.41
670 682 6.761714 GGTTTAGTGACAGAAGAAGTGAGAAA 59.238 38.462 0.00 0.00 0.00 2.52
679 691 1.627550 GAAGTGAGAAAGTCGCCCGC 61.628 60.000 0.00 0.00 36.18 6.13
743 755 2.869503 TTCCCGCATTCTTCGCCTCC 62.870 60.000 0.00 0.00 0.00 4.30
830 843 0.179189 GCCTCGAACAAATTCCAGCG 60.179 55.000 0.00 0.00 0.00 5.18
831 844 0.179189 CCTCGAACAAATTCCAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
832 845 0.179189 CTCGAACAAATTCCAGCGCC 60.179 55.000 2.29 0.00 0.00 6.53
863 878 0.179073 CAACCCGATTCTCCGCATCT 60.179 55.000 0.00 0.00 0.00 2.90
911 930 1.600916 ACAAGTTCCGGCCTGCTTC 60.601 57.895 0.00 0.00 0.00 3.86
918 937 2.694760 CCGGCCTGCTTCTTCTTGC 61.695 63.158 0.00 0.00 0.00 4.01
919 938 1.673665 CGGCCTGCTTCTTCTTGCT 60.674 57.895 0.00 0.00 0.00 3.91
920 939 1.239968 CGGCCTGCTTCTTCTTGCTT 61.240 55.000 0.00 0.00 0.00 3.91
922 941 1.532523 GCCTGCTTCTTCTTGCTTCT 58.467 50.000 0.00 0.00 0.00 2.85
924 943 2.351544 GCCTGCTTCTTCTTGCTTCTTG 60.352 50.000 0.00 0.00 0.00 3.02
925 944 2.228343 CCTGCTTCTTCTTGCTTCTTGG 59.772 50.000 0.00 0.00 0.00 3.61
926 945 1.610522 TGCTTCTTCTTGCTTCTTGGC 59.389 47.619 0.00 0.00 0.00 4.52
927 946 1.400759 GCTTCTTCTTGCTTCTTGGCG 60.401 52.381 0.00 0.00 34.52 5.69
928 947 0.593128 TTCTTCTTGCTTCTTGGCGC 59.407 50.000 0.00 0.00 34.52 6.53
955 974 5.374921 AGCTAGCTATTTGGTAGTACGAGA 58.625 41.667 17.69 0.00 45.65 4.04
960 979 5.179742 AGCTATTTGGTAGTACGAGATCGAG 59.820 44.000 9.58 0.00 36.44 4.04
994 1013 4.012895 CGCACGCACTGGAACCAC 62.013 66.667 0.00 0.00 0.00 4.16
995 1014 3.660111 GCACGCACTGGAACCACC 61.660 66.667 0.00 0.00 39.54 4.61
996 1015 3.345808 CACGCACTGGAACCACCG 61.346 66.667 0.00 0.00 42.61 4.94
997 1016 3.542676 ACGCACTGGAACCACCGA 61.543 61.111 9.56 0.00 42.61 4.69
998 1017 2.280524 CGCACTGGAACCACCGAA 60.281 61.111 0.00 0.00 42.61 4.30
1259 1278 0.616891 GGTACCTCATGGGGTTCGTT 59.383 55.000 25.56 0.00 40.48 3.85
1260 1279 1.677820 GGTACCTCATGGGGTTCGTTG 60.678 57.143 25.56 0.00 40.48 4.10
1261 1280 1.276989 GTACCTCATGGGGTTCGTTGA 59.723 52.381 25.56 0.00 40.48 3.18
1262 1281 0.036306 ACCTCATGGGGTTCGTTGAC 59.964 55.000 12.96 0.00 40.03 3.18
1265 1284 1.302192 CATGGGGTTCGTTGACGGT 60.302 57.895 3.48 0.00 40.29 4.83
1266 1285 1.302192 ATGGGGTTCGTTGACGGTG 60.302 57.895 3.48 0.00 40.29 4.94
1267 1286 1.760479 ATGGGGTTCGTTGACGGTGA 61.760 55.000 3.48 0.00 40.29 4.02
1269 1288 1.068585 GGGTTCGTTGACGGTGACT 59.931 57.895 3.48 0.00 40.29 3.41
1271 1290 0.031721 GGTTCGTTGACGGTGACTCT 59.968 55.000 3.48 0.00 40.29 3.24
1277 1299 1.068194 GTTGACGGTGACTCTGAGGAG 60.068 57.143 9.85 0.00 44.62 3.69
1279 1301 1.304547 ACGGTGACTCTGAGGAGGG 60.305 63.158 9.85 0.00 43.46 4.30
1280 1302 1.000771 CGGTGACTCTGAGGAGGGA 60.001 63.158 9.85 0.00 43.46 4.20
1282 1304 0.686112 GGTGACTCTGAGGAGGGAGG 60.686 65.000 9.85 0.00 43.46 4.30
1283 1305 0.686112 GTGACTCTGAGGAGGGAGGG 60.686 65.000 9.85 0.00 43.46 4.30
1285 1307 2.445654 CTCTGAGGAGGGAGGGGC 60.446 72.222 0.00 0.00 36.03 5.80
1286 1308 3.284251 TCTGAGGAGGGAGGGGCA 61.284 66.667 0.00 0.00 0.00 5.36
1289 1311 4.095400 GAGGAGGGAGGGGCAGGA 62.095 72.222 0.00 0.00 0.00 3.86
1297 1319 1.616628 GAGGGGCAGGAGGGAAGAA 60.617 63.158 0.00 0.00 0.00 2.52
1328 1350 0.100861 GGAAGAAGGAGGTCTACGCG 59.899 60.000 3.53 3.53 0.00 6.01
1386 1408 6.656632 AAAGGGTGAGATTTTTCTTCCTTC 57.343 37.500 0.00 0.00 32.86 3.46
1393 1415 8.409371 GGTGAGATTTTTCTTCCTTCATAATCC 58.591 37.037 0.00 0.00 0.00 3.01
1395 1417 9.182214 TGAGATTTTTCTTCCTTCATAATCCTG 57.818 33.333 0.00 0.00 0.00 3.86
1396 1418 9.183368 GAGATTTTTCTTCCTTCATAATCCTGT 57.817 33.333 0.00 0.00 0.00 4.00
1397 1419 8.964772 AGATTTTTCTTCCTTCATAATCCTGTG 58.035 33.333 0.00 0.00 0.00 3.66
1399 1421 7.452880 TTTTCTTCCTTCATAATCCTGTGTG 57.547 36.000 0.00 0.00 0.00 3.82
1402 1424 3.609853 TCCTTCATAATCCTGTGTGTGC 58.390 45.455 0.00 0.00 0.00 4.57
1426 1448 6.183359 GCGTGTGTGTGGATTAATTTCATTTC 60.183 38.462 0.00 0.00 0.00 2.17
1432 1454 9.703892 TGTGTGGATTAATTTCATTTCGATTTT 57.296 25.926 0.00 0.00 0.00 1.82
1442 1464 9.533253 AATTTCATTTCGATTTTCAGTGTTCTT 57.467 25.926 0.00 0.00 0.00 2.52
1443 1465 8.560576 TTTCATTTCGATTTTCAGTGTTCTTC 57.439 30.769 0.00 0.00 0.00 2.87
1444 1466 7.496529 TCATTTCGATTTTCAGTGTTCTTCT 57.503 32.000 0.00 0.00 0.00 2.85
1445 1467 8.601845 TCATTTCGATTTTCAGTGTTCTTCTA 57.398 30.769 0.00 0.00 0.00 2.10
1446 1468 8.712363 TCATTTCGATTTTCAGTGTTCTTCTAG 58.288 33.333 0.00 0.00 0.00 2.43
1447 1469 8.712363 CATTTCGATTTTCAGTGTTCTTCTAGA 58.288 33.333 0.00 0.00 0.00 2.43
1448 1470 7.875316 TTCGATTTTCAGTGTTCTTCTAGAG 57.125 36.000 0.00 0.00 0.00 2.43
1449 1471 6.390721 TCGATTTTCAGTGTTCTTCTAGAGG 58.609 40.000 0.00 0.00 0.00 3.69
1450 1472 6.208797 TCGATTTTCAGTGTTCTTCTAGAGGA 59.791 38.462 0.00 0.00 0.00 3.71
1451 1473 6.529829 CGATTTTCAGTGTTCTTCTAGAGGAG 59.470 42.308 4.59 0.00 0.00 3.69
1452 1474 5.730296 TTTCAGTGTTCTTCTAGAGGAGG 57.270 43.478 4.59 0.00 0.00 4.30
1453 1475 4.659529 TCAGTGTTCTTCTAGAGGAGGA 57.340 45.455 4.59 0.00 0.00 3.71
1454 1476 5.199982 TCAGTGTTCTTCTAGAGGAGGAT 57.800 43.478 4.59 0.00 30.11 3.24
1455 1477 5.584913 TCAGTGTTCTTCTAGAGGAGGATT 58.415 41.667 4.59 0.00 30.11 3.01
1456 1478 6.019748 TCAGTGTTCTTCTAGAGGAGGATTT 58.980 40.000 4.59 0.00 30.11 2.17
1457 1479 6.071108 TCAGTGTTCTTCTAGAGGAGGATTTG 60.071 42.308 4.59 2.77 30.11 2.32
1458 1480 5.188751 AGTGTTCTTCTAGAGGAGGATTTGG 59.811 44.000 4.59 0.00 30.11 3.28
1459 1481 5.187967 GTGTTCTTCTAGAGGAGGATTTGGA 59.812 44.000 4.59 0.00 30.11 3.53
1460 1482 5.423610 TGTTCTTCTAGAGGAGGATTTGGAG 59.576 44.000 4.59 0.00 30.11 3.86
1461 1483 3.964031 TCTTCTAGAGGAGGATTTGGAGC 59.036 47.826 0.00 0.00 0.00 4.70
1462 1484 3.404869 TCTAGAGGAGGATTTGGAGCA 57.595 47.619 0.00 0.00 0.00 4.26
1463 1485 3.034635 TCTAGAGGAGGATTTGGAGCAC 58.965 50.000 0.00 0.00 0.00 4.40
1464 1486 1.963985 AGAGGAGGATTTGGAGCACT 58.036 50.000 0.00 0.00 0.00 4.40
1465 1487 1.836802 AGAGGAGGATTTGGAGCACTC 59.163 52.381 0.00 0.00 0.00 3.51
1485 1507 2.657296 GTGCTCCGCGCGCTTATA 60.657 61.111 30.48 10.39 45.56 0.98
1486 1508 2.022129 GTGCTCCGCGCGCTTATAT 61.022 57.895 30.48 0.00 45.56 0.86
1487 1509 2.021584 TGCTCCGCGCGCTTATATG 61.022 57.895 30.48 12.26 43.27 1.78
1488 1510 1.733041 GCTCCGCGCGCTTATATGA 60.733 57.895 30.48 13.57 0.00 2.15
1489 1511 1.282248 GCTCCGCGCGCTTATATGAA 61.282 55.000 30.48 4.07 0.00 2.57
1490 1512 0.435008 CTCCGCGCGCTTATATGAAC 59.565 55.000 30.48 0.00 0.00 3.18
1491 1513 0.249114 TCCGCGCGCTTATATGAACA 60.249 50.000 30.48 0.00 0.00 3.18
1492 1514 0.579630 CCGCGCGCTTATATGAACAA 59.420 50.000 30.48 0.00 0.00 2.83
1493 1515 1.194547 CCGCGCGCTTATATGAACAAT 59.805 47.619 30.48 0.00 0.00 2.71
1494 1516 2.349438 CCGCGCGCTTATATGAACAATT 60.349 45.455 30.48 0.00 0.00 2.32
1495 1517 2.896410 CGCGCGCTTATATGAACAATTC 59.104 45.455 30.48 0.00 0.00 2.17
1496 1518 3.603629 CGCGCGCTTATATGAACAATTCA 60.604 43.478 30.48 0.00 45.01 2.57
1576 1598 8.856153 AAAAACTGTTTGGGTAGATTTTTGTT 57.144 26.923 6.53 0.00 28.49 2.83
1577 1599 8.487313 AAAACTGTTTGGGTAGATTTTTGTTC 57.513 30.769 6.53 0.00 0.00 3.18
1578 1600 5.827666 ACTGTTTGGGTAGATTTTTGTTCG 58.172 37.500 0.00 0.00 0.00 3.95
1579 1601 5.189659 TGTTTGGGTAGATTTTTGTTCGG 57.810 39.130 0.00 0.00 0.00 4.30
1580 1602 4.888239 TGTTTGGGTAGATTTTTGTTCGGA 59.112 37.500 0.00 0.00 0.00 4.55
1581 1603 5.217393 GTTTGGGTAGATTTTTGTTCGGAC 58.783 41.667 0.00 0.00 0.00 4.79
1582 1604 4.088056 TGGGTAGATTTTTGTTCGGACA 57.912 40.909 0.00 0.00 0.00 4.02
1583 1605 4.069304 TGGGTAGATTTTTGTTCGGACAG 58.931 43.478 0.00 0.00 37.04 3.51
1584 1606 4.070009 GGGTAGATTTTTGTTCGGACAGT 58.930 43.478 0.00 0.00 37.04 3.55
1585 1607 5.221682 TGGGTAGATTTTTGTTCGGACAGTA 60.222 40.000 0.00 0.00 37.04 2.74
1586 1608 5.878669 GGGTAGATTTTTGTTCGGACAGTAT 59.121 40.000 0.00 0.00 37.04 2.12
1587 1609 6.373495 GGGTAGATTTTTGTTCGGACAGTATT 59.627 38.462 0.00 0.00 37.04 1.89
1588 1610 7.094506 GGGTAGATTTTTGTTCGGACAGTATTT 60.095 37.037 0.00 0.00 37.04 1.40
1589 1611 7.961283 GGTAGATTTTTGTTCGGACAGTATTTC 59.039 37.037 0.00 0.00 37.04 2.17
1590 1612 6.909909 AGATTTTTGTTCGGACAGTATTTCC 58.090 36.000 0.00 0.00 37.04 3.13
1591 1613 6.715264 AGATTTTTGTTCGGACAGTATTTCCT 59.285 34.615 0.00 0.00 37.04 3.36
1592 1614 6.702716 TTTTTGTTCGGACAGTATTTCCTT 57.297 33.333 0.00 0.00 37.04 3.36
1593 1615 5.682943 TTTGTTCGGACAGTATTTCCTTG 57.317 39.130 0.00 0.00 37.04 3.61
1594 1616 3.670625 TGTTCGGACAGTATTTCCTTGG 58.329 45.455 0.00 0.00 0.00 3.61
1595 1617 2.396590 TCGGACAGTATTTCCTTGGC 57.603 50.000 0.00 0.00 0.00 4.52
1596 1618 1.065709 TCGGACAGTATTTCCTTGGCC 60.066 52.381 0.00 0.00 36.62 5.36
1597 1619 1.339631 CGGACAGTATTTCCTTGGCCA 60.340 52.381 0.00 0.00 40.15 5.36
1598 1620 2.683742 CGGACAGTATTTCCTTGGCCAT 60.684 50.000 6.09 0.00 40.15 4.40
1599 1621 2.689983 GGACAGTATTTCCTTGGCCATG 59.310 50.000 6.09 9.47 39.89 3.66
1600 1622 2.689983 GACAGTATTTCCTTGGCCATGG 59.310 50.000 28.04 28.04 0.00 3.66
1601 1623 2.311542 ACAGTATTTCCTTGGCCATGGA 59.688 45.455 31.40 31.40 33.41 3.41
1602 1624 3.052642 ACAGTATTTCCTTGGCCATGGAT 60.053 43.478 34.25 24.79 35.01 3.41
1603 1625 4.167892 ACAGTATTTCCTTGGCCATGGATA 59.832 41.667 34.25 29.97 35.01 2.59
1604 1626 4.520492 CAGTATTTCCTTGGCCATGGATAC 59.480 45.833 34.25 30.86 35.01 2.24
1605 1627 2.051334 TTTCCTTGGCCATGGATACG 57.949 50.000 34.25 12.40 42.51 3.06
1606 1628 0.916086 TTCCTTGGCCATGGATACGT 59.084 50.000 34.25 0.00 42.51 3.57
1607 1629 0.916086 TCCTTGGCCATGGATACGTT 59.084 50.000 31.40 0.00 42.51 3.99
1608 1630 1.283613 TCCTTGGCCATGGATACGTTT 59.716 47.619 31.40 0.00 42.51 3.60
1609 1631 2.099405 CCTTGGCCATGGATACGTTTT 58.901 47.619 29.65 0.00 42.51 2.43
1610 1632 2.495669 CCTTGGCCATGGATACGTTTTT 59.504 45.455 29.65 0.00 42.51 1.94
1635 1657 9.587772 TTTAGAATTTTTCCACGAAATTTCACA 57.412 25.926 17.99 0.00 36.96 3.58
1636 1658 7.463469 AGAATTTTTCCACGAAATTTCACAC 57.537 32.000 17.99 0.00 36.96 3.82
1637 1659 5.881637 ATTTTTCCACGAAATTTCACACG 57.118 34.783 17.99 7.18 31.34 4.49
1638 1660 3.341857 TTTCCACGAAATTTCACACGG 57.658 42.857 17.99 11.36 0.00 4.94
1639 1661 2.242047 TCCACGAAATTTCACACGGA 57.758 45.000 17.99 13.26 0.00 4.69
1640 1662 2.562635 TCCACGAAATTTCACACGGAA 58.437 42.857 17.99 1.22 0.00 4.30
1641 1663 2.546368 TCCACGAAATTTCACACGGAAG 59.454 45.455 17.99 1.90 36.72 3.46
1642 1664 8.279449 TTTTCCACGAAATTTCACACGGAAGT 62.279 38.462 17.99 2.51 36.61 3.01
1643 1665 9.011307 TTTTCCACGAAATTTCACACGGAAGTA 62.011 37.037 17.99 11.21 35.19 2.24
1670 1692 3.296854 GGAACCCAAGTTTGATATCCCC 58.703 50.000 0.00 0.00 35.94 4.81
1671 1693 3.309556 GGAACCCAAGTTTGATATCCCCA 60.310 47.826 0.00 0.00 35.94 4.96
1672 1694 4.349365 GAACCCAAGTTTGATATCCCCAA 58.651 43.478 0.00 0.00 35.94 4.12
1673 1695 4.412060 ACCCAAGTTTGATATCCCCAAA 57.588 40.909 0.00 0.00 0.00 3.28
1674 1696 4.959080 ACCCAAGTTTGATATCCCCAAAT 58.041 39.130 0.00 0.00 36.14 2.32
1675 1697 5.349690 ACCCAAGTTTGATATCCCCAAATT 58.650 37.500 0.00 0.00 36.14 1.82
1676 1698 5.790096 ACCCAAGTTTGATATCCCCAAATTT 59.210 36.000 0.00 0.00 36.14 1.82
1677 1699 6.070251 ACCCAAGTTTGATATCCCCAAATTTC 60.070 38.462 0.00 0.00 36.14 2.17
1678 1700 6.070309 CCCAAGTTTGATATCCCCAAATTTCA 60.070 38.462 0.00 0.00 36.14 2.69
1679 1701 7.043565 CCAAGTTTGATATCCCCAAATTTCAG 58.956 38.462 0.00 0.00 36.14 3.02
1680 1702 7.093377 CCAAGTTTGATATCCCCAAATTTCAGA 60.093 37.037 0.00 0.00 36.14 3.27
1681 1703 8.480501 CAAGTTTGATATCCCCAAATTTCAGAT 58.519 33.333 0.00 0.00 36.14 2.90
1682 1704 8.613922 AGTTTGATATCCCCAAATTTCAGATT 57.386 30.769 0.00 0.00 36.14 2.40
1683 1705 9.050154 AGTTTGATATCCCCAAATTTCAGATTT 57.950 29.630 0.00 0.00 36.14 2.17
1684 1706 9.671279 GTTTGATATCCCCAAATTTCAGATTTT 57.329 29.630 0.00 0.00 36.14 1.82
1731 1753 7.795482 TGATTATTTTTCGTATAGGGGTGTG 57.205 36.000 0.00 0.00 0.00 3.82
1732 1754 6.768861 TGATTATTTTTCGTATAGGGGTGTGG 59.231 38.462 0.00 0.00 0.00 4.17
1733 1755 4.847990 ATTTTTCGTATAGGGGTGTGGA 57.152 40.909 0.00 0.00 0.00 4.02
1734 1756 3.899052 TTTTCGTATAGGGGTGTGGAG 57.101 47.619 0.00 0.00 0.00 3.86
1735 1757 1.117150 TTCGTATAGGGGTGTGGAGC 58.883 55.000 0.00 0.00 0.00 4.70
1736 1758 0.032912 TCGTATAGGGGTGTGGAGCA 60.033 55.000 0.00 0.00 0.00 4.26
1737 1759 0.104304 CGTATAGGGGTGTGGAGCAC 59.896 60.000 0.00 0.00 46.97 4.40
1761 1783 3.956744 AGGAGCTCCTGTGTATTTTTCC 58.043 45.455 34.74 2.17 46.55 3.13
1783 1809 3.351740 TGTTCTTCCAGCAGTTTTGTGA 58.648 40.909 0.00 0.00 0.00 3.58
1788 1814 2.838736 TCCAGCAGTTTTGTGAGACTC 58.161 47.619 0.00 0.00 0.00 3.36
1801 1827 8.542953 GTTTTGTGAGACTCAAATGGAATTTTC 58.457 33.333 6.76 0.00 46.10 2.29
1809 1835 6.310149 ACTCAAATGGAATTTTCAGAGACCT 58.690 36.000 0.00 0.00 46.10 3.85
1814 1840 4.151883 TGGAATTTTCAGAGACCTTTGGG 58.848 43.478 0.00 0.00 38.88 4.12
1875 1902 9.860898 AAAAACTGTAGATATTTCAATTGCCTC 57.139 29.630 0.00 0.00 0.00 4.70
1890 1917 7.877003 TCAATTGCCTCTTTAAAAATCGTACA 58.123 30.769 0.00 0.00 0.00 2.90
1905 1932 6.481954 AATCGTACAGGTGTTCTGAATTTC 57.518 37.500 0.00 0.00 46.18 2.17
1912 1939 7.440523 ACAGGTGTTCTGAATTTCTTCATAC 57.559 36.000 0.00 0.00 46.18 2.39
1916 1943 8.787852 AGGTGTTCTGAATTTCTTCATACTTTC 58.212 33.333 0.00 0.00 40.52 2.62
1970 2025 9.327628 AGTTATCTGATCTGATGTCAAAATCTG 57.672 33.333 21.63 6.29 0.00 2.90
1973 2028 8.803397 ATCTGATCTGATGTCAAAATCTGAAA 57.197 30.769 13.74 0.00 37.84 2.69
2005 2060 8.094798 TGTACTGTCTGTAACAAATTTGATCC 57.905 34.615 24.64 11.12 37.45 3.36
2006 2061 7.717436 TGTACTGTCTGTAACAAATTTGATCCA 59.283 33.333 24.64 14.65 37.45 3.41
2007 2062 7.581213 ACTGTCTGTAACAAATTTGATCCAA 57.419 32.000 24.64 5.37 37.45 3.53
2060 2124 8.485578 TTTGGGTTAAAGTTCCATACAAGAAT 57.514 30.769 0.00 0.00 0.00 2.40
2063 2127 7.393234 TGGGTTAAAGTTCCATACAAGAATCTG 59.607 37.037 0.00 0.00 0.00 2.90
2069 2133 8.558973 AAGTTCCATACAAGAATCTGAGAAAG 57.441 34.615 0.00 0.00 0.00 2.62
2070 2134 7.684529 AGTTCCATACAAGAATCTGAGAAAGT 58.315 34.615 0.00 0.00 0.00 2.66
2071 2135 8.816894 AGTTCCATACAAGAATCTGAGAAAGTA 58.183 33.333 0.00 0.00 0.00 2.24
2072 2136 9.436957 GTTCCATACAAGAATCTGAGAAAGTAA 57.563 33.333 0.00 0.00 0.00 2.24
2099 2163 7.674471 AAGAAACTATGAGCTGTAAGGAAAC 57.326 36.000 0.00 0.00 0.00 2.78
2111 2175 5.440610 CTGTAAGGAAACCATGATAGGCTT 58.559 41.667 0.00 0.00 0.00 4.35
2112 2176 5.437060 TGTAAGGAAACCATGATAGGCTTC 58.563 41.667 0.00 0.00 33.89 3.86
2128 2192 7.673926 TGATAGGCTTCTTTTAAAAGTTCCCAT 59.326 33.333 23.75 17.20 37.31 4.00
2133 2197 6.483307 GCTTCTTTTAAAAGTTCCCATGCTTT 59.517 34.615 23.75 0.00 37.31 3.51
2134 2198 7.518848 GCTTCTTTTAAAAGTTCCCATGCTTTG 60.519 37.037 23.75 0.00 37.31 2.77
2144 2208 2.101783 CCCATGCTTTGGCTATGTCAA 58.898 47.619 1.09 0.00 44.97 3.18
2154 2221 7.148255 TGCTTTGGCTATGTCAACATAAACTAG 60.148 37.037 4.53 0.00 38.26 2.57
2203 2270 9.799106 AAAACTTAATCTCTTCTTGGAGAATGA 57.201 29.630 0.00 0.00 44.21 2.57
2206 2273 9.612066 ACTTAATCTCTTCTTGGAGAATGATTC 57.388 33.333 15.63 0.00 44.21 2.52
2221 2288 9.567848 GGAGAATGATTCTATAGTCGATTTCTC 57.432 37.037 7.82 18.57 40.87 2.87
2237 2304 5.052960 CGATTTCTCAAACTCGTGTATCTCG 60.053 44.000 0.00 0.00 0.00 4.04
2239 2306 2.159421 TCTCAAACTCGTGTATCTCGGC 60.159 50.000 0.00 0.00 0.00 5.54
2245 2312 2.492484 ACTCGTGTATCTCGGCTTCTTT 59.508 45.455 0.00 0.00 0.00 2.52
2279 2353 3.621268 TGTTTTGACGAAGAACACTCCTG 59.379 43.478 0.00 0.00 0.00 3.86
2303 2377 1.252904 TGCCTTGCAGGAATTCTGGC 61.253 55.000 5.23 9.85 43.54 4.85
2348 2422 1.202222 GCATGGCATTGTCCTCGAAAG 60.202 52.381 0.00 0.00 0.00 2.62
2353 2427 1.730064 GCATTGTCCTCGAAAGCGTTA 59.270 47.619 0.00 0.00 38.98 3.18
2362 2436 4.082625 TCCTCGAAAGCGTTAGTGATAACA 60.083 41.667 0.00 0.00 38.98 2.41
2389 2463 3.574396 TCGATGACAGGAGATATTGGGTC 59.426 47.826 0.00 0.00 0.00 4.46
2416 2490 3.644265 TGCCAAACACAGAGTCTAGGTAA 59.356 43.478 0.00 0.00 0.00 2.85
2417 2491 4.286032 TGCCAAACACAGAGTCTAGGTAAT 59.714 41.667 0.00 0.00 0.00 1.89
2450 2524 9.803507 AATTCAGATCTTGCTTCCAATCATATA 57.196 29.630 0.00 0.00 0.00 0.86
2451 2525 9.976776 ATTCAGATCTTGCTTCCAATCATATAT 57.023 29.630 0.00 0.00 0.00 0.86
2490 2564 9.382275 ACTAATGTTTTTCATCTTTTGCTTTGT 57.618 25.926 0.00 0.00 35.48 2.83
2491 2565 9.853921 CTAATGTTTTTCATCTTTTGCTTTGTC 57.146 29.630 0.00 0.00 35.48 3.18
2546 2626 7.255346 GCACACCCTGTTTAATTTGTACTAGTT 60.255 37.037 0.00 0.00 0.00 2.24
2550 2630 8.843262 ACCCTGTTTAATTTGTACTAGTTGAAC 58.157 33.333 0.00 11.19 0.00 3.18
2673 2755 9.932699 TTTGACAAATTTGTATTGCTCAAAATG 57.067 25.926 23.33 0.00 42.43 2.32
2695 2777 2.813179 CGGTTGCCAGCTCGCATAC 61.813 63.158 6.90 8.30 38.87 2.39
2702 2784 0.037882 CCAGCTCGCATACCGATGAT 60.038 55.000 0.00 0.00 46.31 2.45
2705 2787 0.786581 GCTCGCATACCGATGATGTG 59.213 55.000 0.00 0.00 46.31 3.21
2721 2803 1.450134 GTGATCATGGACGCTGGCA 60.450 57.895 0.00 0.00 0.00 4.92
2724 2806 0.810648 GATCATGGACGCTGGCAAAA 59.189 50.000 0.00 0.00 0.00 2.44
2747 2829 6.824305 AAAATGACAGGAGATAGTTGGTTG 57.176 37.500 0.00 0.00 0.00 3.77
2748 2830 5.762179 AATGACAGGAGATAGTTGGTTGA 57.238 39.130 0.00 0.00 0.00 3.18
2749 2831 4.808414 TGACAGGAGATAGTTGGTTGAG 57.192 45.455 0.00 0.00 0.00 3.02
2750 2832 4.160329 TGACAGGAGATAGTTGGTTGAGT 58.840 43.478 0.00 0.00 0.00 3.41
2751 2833 5.330233 TGACAGGAGATAGTTGGTTGAGTA 58.670 41.667 0.00 0.00 0.00 2.59
2752 2834 5.185249 TGACAGGAGATAGTTGGTTGAGTAC 59.815 44.000 0.00 0.00 0.00 2.73
2753 2835 5.084519 ACAGGAGATAGTTGGTTGAGTACA 58.915 41.667 0.00 0.00 0.00 2.90
2754 2836 5.186021 ACAGGAGATAGTTGGTTGAGTACAG 59.814 44.000 0.00 0.00 0.00 2.74
2755 2837 5.419155 CAGGAGATAGTTGGTTGAGTACAGA 59.581 44.000 0.00 0.00 0.00 3.41
2756 2838 6.097554 CAGGAGATAGTTGGTTGAGTACAGAT 59.902 42.308 0.00 0.00 0.00 2.90
2767 2849 4.508461 TGAGTACAGATTTTTCGACGGA 57.492 40.909 0.00 0.00 0.00 4.69
2769 2851 3.846360 AGTACAGATTTTTCGACGGAGG 58.154 45.455 0.00 0.00 0.00 4.30
2771 2853 3.947910 ACAGATTTTTCGACGGAGGTA 57.052 42.857 0.00 0.00 0.00 3.08
2775 2857 4.927425 CAGATTTTTCGACGGAGGTAGAAA 59.073 41.667 0.00 0.00 43.19 2.52
2783 2865 5.484715 TCGACGGAGGTAGAAATTTTCAAT 58.515 37.500 11.53 0.00 0.00 2.57
2841 2923 1.001181 TCAACCCTTACGTCCCTTTCG 59.999 52.381 0.00 0.00 0.00 3.46
2850 2932 3.891056 ACGTCCCTTTCGTTTGAAATC 57.109 42.857 0.00 0.00 42.90 2.17
2868 2950 7.582667 TGAAATCTTCATCAGATCATGCAAT 57.417 32.000 0.00 0.00 41.93 3.56
2870 2952 5.864628 ATCTTCATCAGATCATGCAATCG 57.135 39.130 0.00 0.00 37.79 3.34
2878 2961 5.121105 TCAGATCATGCAATCGACAAATCT 58.879 37.500 0.00 0.00 0.00 2.40
2881 2964 6.414109 CAGATCATGCAATCGACAAATCTTTC 59.586 38.462 0.00 0.00 0.00 2.62
2899 2982 6.249035 TCTTTCAATACGACCAACAAATCC 57.751 37.500 0.00 0.00 0.00 3.01
2902 2985 7.662258 TCTTTCAATACGACCAACAAATCCTTA 59.338 33.333 0.00 0.00 0.00 2.69
2903 2986 7.931578 TTCAATACGACCAACAAATCCTTAT 57.068 32.000 0.00 0.00 0.00 1.73
2908 2991 6.677781 ACGACCAACAAATCCTTATATGTG 57.322 37.500 0.00 0.00 0.00 3.21
2943 3026 9.895138 TCTATTTCTCTTGATGATGATTGTTGA 57.105 29.630 0.00 0.00 0.00 3.18
3066 3183 1.407979 GGGGAGATCGACTTTCGCTTA 59.592 52.381 0.00 0.00 40.21 3.09
3162 3279 3.997064 CTGTGGCGGCTCCGAGAAG 62.997 68.421 13.11 0.00 42.83 2.85
3170 3287 4.082523 CTCCGAGAAGGCCGGCAA 62.083 66.667 30.85 1.26 46.10 4.52
3478 3595 2.694628 GCTCAGAGGTGACTGATGAGAT 59.305 50.000 13.04 0.00 46.56 2.75
3555 3682 1.269998 AGTGAAGCAGTAGGTCGTGAC 59.730 52.381 0.00 0.00 0.00 3.67
3556 3683 1.269998 GTGAAGCAGTAGGTCGTGACT 59.730 52.381 0.00 0.00 0.00 3.41
3557 3684 1.540267 TGAAGCAGTAGGTCGTGACTC 59.460 52.381 0.00 0.00 0.00 3.36
3558 3685 0.522180 AAGCAGTAGGTCGTGACTCG 59.478 55.000 0.00 0.00 41.41 4.18
3559 3686 0.605860 AGCAGTAGGTCGTGACTCGT 60.606 55.000 0.00 0.00 40.80 4.18
3560 3687 0.454620 GCAGTAGGTCGTGACTCGTG 60.455 60.000 0.00 0.00 40.80 4.35
3561 3688 1.154197 CAGTAGGTCGTGACTCGTGA 58.846 55.000 0.00 0.00 40.80 4.35
3578 3706 3.647824 AGCGTCAGTGCTTGCTTC 58.352 55.556 0.00 0.00 44.46 3.86
3625 3753 5.441718 TTCCATATTGAAGGTGAAGCTCT 57.558 39.130 0.00 0.00 0.00 4.09
3642 3770 7.010923 GTGAAGCTCTACATTCCTACAAATCAG 59.989 40.741 0.00 0.00 0.00 2.90
3651 3779 4.715534 TCCTACAAATCAGGGTTGTTCA 57.284 40.909 0.00 0.00 39.80 3.18
3911 4055 4.396790 TCAGTTTTGTACAAGGGTGTGTTC 59.603 41.667 8.56 0.00 38.82 3.18
3967 4117 5.417580 ACAGAGAGAGACCAGAGAAATACAC 59.582 44.000 0.00 0.00 0.00 2.90
3971 4121 5.654650 AGAGAGACCAGAGAAATACACGATT 59.345 40.000 0.00 0.00 0.00 3.34
3978 4128 7.159372 ACCAGAGAAATACACGATTGTAGTTT 58.841 34.615 1.22 0.00 44.48 2.66
4372 4526 5.212194 ACACCTTTTCAAATTCGATGAACG 58.788 37.500 0.00 0.00 44.09 3.95
4376 4530 6.083630 CCTTTTCAAATTCGATGAACGCTTA 58.916 36.000 0.00 0.00 42.26 3.09
4414 4573 3.733024 TCCAAAACGCACGAACATATC 57.267 42.857 0.00 0.00 0.00 1.63
4568 6799 7.855784 AACACAAATAAAAGGGGAGAAATCT 57.144 32.000 0.00 0.00 0.00 2.40
4581 6812 2.887152 GAGAAATCTTGCCAACCTGTGT 59.113 45.455 0.00 0.00 0.00 3.72
4631 6863 5.122396 AGCTTGATCGAGTTCATTTTGTACC 59.878 40.000 11.71 0.00 0.00 3.34
4634 6866 4.387559 TGATCGAGTTCATTTTGTACCGTG 59.612 41.667 0.00 0.00 0.00 4.94
4680 6912 5.201713 ACATGTAGATCATAGGGTTGTCG 57.798 43.478 0.00 0.00 34.67 4.35
4684 6916 5.902681 TGTAGATCATAGGGTTGTCGAAAG 58.097 41.667 0.00 0.00 0.00 2.62
4690 6922 5.556915 TCATAGGGTTGTCGAAAGAAATGT 58.443 37.500 0.00 0.00 45.01 2.71
4691 6923 6.703319 TCATAGGGTTGTCGAAAGAAATGTA 58.297 36.000 0.00 0.00 45.01 2.29
4692 6924 6.592607 TCATAGGGTTGTCGAAAGAAATGTAC 59.407 38.462 0.00 0.00 45.01 2.90
4703 6935 9.400638 GTCGAAAGAAATGTACTAGATCATAGG 57.599 37.037 0.00 0.00 45.01 2.57
4772 7004 8.422566 ACTTTAAGTATTATACCTGGTCTCTGC 58.577 37.037 0.63 0.00 0.00 4.26
4773 7005 7.907841 TTAAGTATTATACCTGGTCTCTGCA 57.092 36.000 0.63 0.00 0.00 4.41
4774 7006 8.492415 TTAAGTATTATACCTGGTCTCTGCAT 57.508 34.615 0.63 0.00 0.00 3.96
4775 7007 9.596308 TTAAGTATTATACCTGGTCTCTGCATA 57.404 33.333 0.63 0.00 0.00 3.14
4776 7008 8.492415 AAGTATTATACCTGGTCTCTGCATAA 57.508 34.615 0.63 1.00 0.00 1.90
4777 7009 7.897864 AGTATTATACCTGGTCTCTGCATAAC 58.102 38.462 0.63 0.00 0.00 1.89
4778 7010 7.730784 AGTATTATACCTGGTCTCTGCATAACT 59.269 37.037 0.63 0.00 0.00 2.24
4779 7011 9.021807 GTATTATACCTGGTCTCTGCATAACTA 57.978 37.037 0.63 0.00 0.00 2.24
4780 7012 7.907841 TTATACCTGGTCTCTGCATAACTAA 57.092 36.000 0.63 0.00 0.00 2.24
4781 7013 6.808321 ATACCTGGTCTCTGCATAACTAAA 57.192 37.500 0.63 0.00 0.00 1.85
4782 7014 5.499004 ACCTGGTCTCTGCATAACTAAAA 57.501 39.130 0.00 0.00 0.00 1.52
4783 7015 6.067217 ACCTGGTCTCTGCATAACTAAAAT 57.933 37.500 0.00 0.00 0.00 1.82
4784 7016 5.882557 ACCTGGTCTCTGCATAACTAAAATG 59.117 40.000 0.00 0.00 0.00 2.32
4797 7029 8.136057 CATAACTAAAATGCAAACAACCAACA 57.864 30.769 0.00 0.00 0.00 3.33
4798 7030 8.607459 CATAACTAAAATGCAAACAACCAACAA 58.393 29.630 0.00 0.00 0.00 2.83
4799 7031 7.440523 AACTAAAATGCAAACAACCAACAAA 57.559 28.000 0.00 0.00 0.00 2.83
4800 7032 7.440523 ACTAAAATGCAAACAACCAACAAAA 57.559 28.000 0.00 0.00 0.00 2.44
4801 7033 7.301789 ACTAAAATGCAAACAACCAACAAAAC 58.698 30.769 0.00 0.00 0.00 2.43
4802 7034 4.693538 AATGCAAACAACCAACAAAACC 57.306 36.364 0.00 0.00 0.00 3.27
4803 7035 2.427506 TGCAAACAACCAACAAAACCC 58.572 42.857 0.00 0.00 0.00 4.11
4804 7036 2.039084 TGCAAACAACCAACAAAACCCT 59.961 40.909 0.00 0.00 0.00 4.34
4805 7037 2.675844 GCAAACAACCAACAAAACCCTC 59.324 45.455 0.00 0.00 0.00 4.30
4806 7038 3.866449 GCAAACAACCAACAAAACCCTCA 60.866 43.478 0.00 0.00 0.00 3.86
4807 7039 3.603158 AACAACCAACAAAACCCTCAC 57.397 42.857 0.00 0.00 0.00 3.51
4808 7040 1.474879 ACAACCAACAAAACCCTCACG 59.525 47.619 0.00 0.00 0.00 4.35
4809 7041 1.746220 CAACCAACAAAACCCTCACGA 59.254 47.619 0.00 0.00 0.00 4.35
4810 7042 1.385528 ACCAACAAAACCCTCACGAC 58.614 50.000 0.00 0.00 0.00 4.34
4811 7043 1.340211 ACCAACAAAACCCTCACGACA 60.340 47.619 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
249 250 2.683742 GCCAAAGCTAGCATACAAGGGA 60.684 50.000 18.83 0.00 35.50 4.20
434 441 4.154918 GTGCACAAGATTCCCTTACTTCAG 59.845 45.833 13.17 0.00 32.86 3.02
529 540 4.632327 TGTGGGAGACAAATACACATGA 57.368 40.909 0.00 0.00 37.16 3.07
544 555 3.519107 TGACAGATTTGAGCTATGTGGGA 59.481 43.478 0.00 0.00 0.00 4.37
555 567 4.999311 CAGACTGTGGATTGACAGATTTGA 59.001 41.667 7.65 0.00 45.39 2.69
656 668 2.289133 GGGCGACTTTCTCACTTCTTCT 60.289 50.000 0.00 0.00 0.00 2.85
666 678 4.436998 CCTCGCGGGCGACTTTCT 62.437 66.667 12.26 0.00 44.01 2.52
670 682 0.892358 TATTATCCTCGCGGGCGACT 60.892 55.000 12.26 2.73 44.01 4.18
679 691 5.178809 GGAACGGACCAATTTATTATCCTCG 59.821 44.000 0.00 0.00 0.00 4.63
723 735 1.002624 AGGCGAAGAATGCGGGAAA 60.003 52.632 0.00 0.00 37.87 3.13
831 844 4.452733 GGTTGGTCCGAGCGAGGG 62.453 72.222 0.00 0.00 0.00 4.30
832 845 4.452733 GGGTTGGTCCGAGCGAGG 62.453 72.222 2.12 0.00 37.00 4.63
840 853 1.153429 CGGAGAATCGGGTTGGTCC 60.153 63.158 0.00 0.00 34.37 4.46
841 854 1.814169 GCGGAGAATCGGGTTGGTC 60.814 63.158 0.00 0.00 35.77 4.02
863 878 1.207791 GCAGGAGGGAGAAGGAATCA 58.792 55.000 0.00 0.00 0.00 2.57
911 930 1.154338 CGCGCCAAGAAGCAAGAAG 60.154 57.895 0.00 0.00 0.00 2.85
918 937 1.211818 CTAGCTAGCGCGCCAAGAAG 61.212 60.000 30.33 20.47 42.32 2.85
919 938 1.226974 CTAGCTAGCGCGCCAAGAA 60.227 57.895 30.33 15.57 42.32 2.52
920 939 2.413351 CTAGCTAGCGCGCCAAGA 59.587 61.111 30.33 10.14 42.32 3.02
955 974 2.491022 GGTAGCTCCGGTGCTCGAT 61.491 63.158 32.70 13.41 42.97 3.59
960 979 4.840005 GGCAGGTAGCTCCGGTGC 62.840 72.222 20.71 20.71 44.79 5.01
984 1003 2.280592 GCGTTCGGTGGTTCCAGT 60.281 61.111 0.00 0.00 35.57 4.00
1229 1248 1.742761 TGAGGTACCCGTAGTTCTCG 58.257 55.000 8.74 0.00 33.05 4.04
1259 1278 0.609406 CCTCCTCAGAGTCACCGTCA 60.609 60.000 0.00 0.00 38.58 4.35
1260 1279 1.316706 CCCTCCTCAGAGTCACCGTC 61.317 65.000 0.00 0.00 38.58 4.79
1261 1280 1.304547 CCCTCCTCAGAGTCACCGT 60.305 63.158 0.00 0.00 38.58 4.83
1262 1281 1.000771 TCCCTCCTCAGAGTCACCG 60.001 63.158 0.00 0.00 38.58 4.94
1265 1284 1.700368 CCCTCCCTCCTCAGAGTCA 59.300 63.158 0.00 0.00 38.58 3.41
1266 1285 1.075600 CCCCTCCCTCCTCAGAGTC 60.076 68.421 0.00 0.00 38.58 3.36
1267 1286 3.114390 CCCCTCCCTCCTCAGAGT 58.886 66.667 0.00 0.00 38.58 3.24
1269 1288 3.284251 TGCCCCTCCCTCCTCAGA 61.284 66.667 0.00 0.00 0.00 3.27
1271 1290 4.421554 CCTGCCCCTCCCTCCTCA 62.422 72.222 0.00 0.00 0.00 3.86
1277 1299 4.760220 TTCCCTCCTGCCCCTCCC 62.760 72.222 0.00 0.00 0.00 4.30
1279 1301 1.616628 TTCTTCCCTCCTGCCCCTC 60.617 63.158 0.00 0.00 0.00 4.30
1280 1302 1.617839 CTTCTTCCCTCCTGCCCCT 60.618 63.158 0.00 0.00 0.00 4.79
1282 1304 1.911471 CTCTTCTTCCCTCCTGCCC 59.089 63.158 0.00 0.00 0.00 5.36
1283 1305 1.223211 GCTCTTCTTCCCTCCTGCC 59.777 63.158 0.00 0.00 0.00 4.85
1285 1307 1.153469 GCGCTCTTCTTCCCTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
1286 1308 2.363172 GGCGCTCTTCTTCCCTCCT 61.363 63.158 7.64 0.00 0.00 3.69
1289 1311 2.997897 ACGGCGCTCTTCTTCCCT 60.998 61.111 6.90 0.00 0.00 4.20
1386 1408 2.076100 ACACGCACACACAGGATTATG 58.924 47.619 0.00 0.00 0.00 1.90
1393 1415 1.060779 CACACACACGCACACACAG 59.939 57.895 0.00 0.00 0.00 3.66
1395 1417 1.436195 ATCCACACACACGCACACAC 61.436 55.000 0.00 0.00 0.00 3.82
1396 1418 0.746204 AATCCACACACACGCACACA 60.746 50.000 0.00 0.00 0.00 3.72
1397 1419 1.222300 TAATCCACACACACGCACAC 58.778 50.000 0.00 0.00 0.00 3.82
1399 1421 3.552604 AATTAATCCACACACACGCAC 57.447 42.857 0.00 0.00 0.00 5.34
1402 1424 6.032355 CGAAATGAAATTAATCCACACACACG 59.968 38.462 0.00 0.00 33.67 4.49
1426 1448 6.390721 TCCTCTAGAAGAACACTGAAAATCG 58.609 40.000 0.00 0.00 0.00 3.34
1432 1454 4.659529 TCCTCCTCTAGAAGAACACTGA 57.340 45.455 0.00 0.00 0.00 3.41
1435 1457 5.187967 TCCAAATCCTCCTCTAGAAGAACAC 59.812 44.000 0.00 0.00 0.00 3.32
1436 1458 5.342017 TCCAAATCCTCCTCTAGAAGAACA 58.658 41.667 0.00 0.00 0.00 3.18
1438 1460 4.407296 GCTCCAAATCCTCCTCTAGAAGAA 59.593 45.833 0.00 0.00 0.00 2.52
1439 1461 3.964031 GCTCCAAATCCTCCTCTAGAAGA 59.036 47.826 0.00 0.00 0.00 2.87
1440 1462 3.708631 TGCTCCAAATCCTCCTCTAGAAG 59.291 47.826 0.00 0.00 0.00 2.85
1441 1463 3.452627 GTGCTCCAAATCCTCCTCTAGAA 59.547 47.826 0.00 0.00 0.00 2.10
1442 1464 3.034635 GTGCTCCAAATCCTCCTCTAGA 58.965 50.000 0.00 0.00 0.00 2.43
1443 1465 3.037549 AGTGCTCCAAATCCTCCTCTAG 58.962 50.000 0.00 0.00 0.00 2.43
1444 1466 3.034635 GAGTGCTCCAAATCCTCCTCTA 58.965 50.000 0.00 0.00 0.00 2.43
1445 1467 1.836802 GAGTGCTCCAAATCCTCCTCT 59.163 52.381 0.00 0.00 0.00 3.69
1446 1468 2.323968 GAGTGCTCCAAATCCTCCTC 57.676 55.000 0.00 0.00 0.00 3.71
1471 1493 0.435008 GTTCATATAAGCGCGCGGAG 59.565 55.000 33.06 13.65 0.00 4.63
1472 1494 0.249114 TGTTCATATAAGCGCGCGGA 60.249 50.000 33.06 18.43 0.00 5.54
1473 1495 0.579630 TTGTTCATATAAGCGCGCGG 59.420 50.000 33.06 13.10 0.00 6.46
1474 1496 2.577300 ATTGTTCATATAAGCGCGCG 57.423 45.000 28.44 28.44 0.00 6.86
1475 1497 3.872354 TGAATTGTTCATATAAGCGCGC 58.128 40.909 26.66 26.66 34.08 6.86
1551 1573 8.856153 AACAAAAATCTACCCAAACAGTTTTT 57.144 26.923 0.00 0.00 0.00 1.94
1552 1574 7.276878 CGAACAAAAATCTACCCAAACAGTTTT 59.723 33.333 0.00 0.00 0.00 2.43
1553 1575 6.754675 CGAACAAAAATCTACCCAAACAGTTT 59.245 34.615 0.00 0.00 0.00 2.66
1554 1576 6.270064 CGAACAAAAATCTACCCAAACAGTT 58.730 36.000 0.00 0.00 0.00 3.16
1555 1577 5.221165 CCGAACAAAAATCTACCCAAACAGT 60.221 40.000 0.00 0.00 0.00 3.55
1556 1578 5.009210 TCCGAACAAAAATCTACCCAAACAG 59.991 40.000 0.00 0.00 0.00 3.16
1557 1579 4.888239 TCCGAACAAAAATCTACCCAAACA 59.112 37.500 0.00 0.00 0.00 2.83
1558 1580 5.217393 GTCCGAACAAAAATCTACCCAAAC 58.783 41.667 0.00 0.00 0.00 2.93
1559 1581 4.888239 TGTCCGAACAAAAATCTACCCAAA 59.112 37.500 0.00 0.00 30.70 3.28
1560 1582 4.462133 TGTCCGAACAAAAATCTACCCAA 58.538 39.130 0.00 0.00 30.70 4.12
1561 1583 4.069304 CTGTCCGAACAAAAATCTACCCA 58.931 43.478 0.00 0.00 34.24 4.51
1562 1584 4.070009 ACTGTCCGAACAAAAATCTACCC 58.930 43.478 0.00 0.00 34.24 3.69
1563 1585 6.980051 ATACTGTCCGAACAAAAATCTACC 57.020 37.500 0.00 0.00 34.24 3.18
1564 1586 7.961283 GGAAATACTGTCCGAACAAAAATCTAC 59.039 37.037 0.00 0.00 34.24 2.59
1565 1587 7.881232 AGGAAATACTGTCCGAACAAAAATCTA 59.119 33.333 0.00 0.00 40.36 1.98
1566 1588 6.715264 AGGAAATACTGTCCGAACAAAAATCT 59.285 34.615 0.00 0.00 40.36 2.40
1567 1589 6.909909 AGGAAATACTGTCCGAACAAAAATC 58.090 36.000 0.00 0.00 40.36 2.17
1568 1590 6.894339 AGGAAATACTGTCCGAACAAAAAT 57.106 33.333 0.00 0.00 40.36 1.82
1569 1591 6.460399 CCAAGGAAATACTGTCCGAACAAAAA 60.460 38.462 0.00 0.00 40.36 1.94
1570 1592 5.009210 CCAAGGAAATACTGTCCGAACAAAA 59.991 40.000 0.00 0.00 40.36 2.44
1571 1593 4.517453 CCAAGGAAATACTGTCCGAACAAA 59.483 41.667 0.00 0.00 40.36 2.83
1572 1594 4.069304 CCAAGGAAATACTGTCCGAACAA 58.931 43.478 0.00 0.00 40.36 2.83
1573 1595 3.670625 CCAAGGAAATACTGTCCGAACA 58.329 45.455 0.00 0.00 40.36 3.18
1574 1596 2.418976 GCCAAGGAAATACTGTCCGAAC 59.581 50.000 0.00 0.00 40.36 3.95
1575 1597 2.617021 GGCCAAGGAAATACTGTCCGAA 60.617 50.000 0.00 0.00 40.36 4.30
1576 1598 1.065709 GGCCAAGGAAATACTGTCCGA 60.066 52.381 0.00 0.00 40.36 4.55
1577 1599 1.339631 TGGCCAAGGAAATACTGTCCG 60.340 52.381 0.61 0.00 40.36 4.79
1578 1600 2.507407 TGGCCAAGGAAATACTGTCC 57.493 50.000 0.61 0.00 35.17 4.02
1579 1601 2.689983 CCATGGCCAAGGAAATACTGTC 59.310 50.000 22.97 0.00 0.00 3.51
1580 1602 2.311542 TCCATGGCCAAGGAAATACTGT 59.688 45.455 27.21 0.00 0.00 3.55
1581 1603 3.017048 TCCATGGCCAAGGAAATACTG 57.983 47.619 27.21 8.77 0.00 2.74
1582 1604 3.979501 ATCCATGGCCAAGGAAATACT 57.020 42.857 32.12 13.88 37.48 2.12
1583 1605 3.502211 CGTATCCATGGCCAAGGAAATAC 59.498 47.826 32.12 26.59 37.48 1.89
1584 1606 3.137544 ACGTATCCATGGCCAAGGAAATA 59.862 43.478 32.12 18.73 37.48 1.40
1585 1607 2.091885 ACGTATCCATGGCCAAGGAAAT 60.092 45.455 32.12 19.79 37.48 2.17
1586 1608 1.283613 ACGTATCCATGGCCAAGGAAA 59.716 47.619 32.12 12.46 37.48 3.13
1587 1609 0.916086 ACGTATCCATGGCCAAGGAA 59.084 50.000 32.12 18.62 37.48 3.36
1588 1610 0.916086 AACGTATCCATGGCCAAGGA 59.084 50.000 30.80 30.80 38.50 3.36
1589 1611 1.762708 AAACGTATCCATGGCCAAGG 58.237 50.000 21.42 21.42 0.00 3.61
1590 1612 3.866883 AAAAACGTATCCATGGCCAAG 57.133 42.857 10.96 4.76 0.00 3.61
1609 1631 9.587772 TGTGAAATTTCGTGGAAAAATTCTAAA 57.412 25.926 13.34 0.00 35.75 1.85
1610 1632 9.026074 GTGTGAAATTTCGTGGAAAAATTCTAA 57.974 29.630 13.34 6.45 35.75 2.10
1611 1633 7.377397 CGTGTGAAATTTCGTGGAAAAATTCTA 59.623 33.333 13.34 7.10 35.75 2.10
1612 1634 6.198216 CGTGTGAAATTTCGTGGAAAAATTCT 59.802 34.615 13.34 0.02 35.75 2.40
1613 1635 6.344032 CGTGTGAAATTTCGTGGAAAAATTC 58.656 36.000 13.34 10.53 35.75 2.17
1614 1636 5.233263 CCGTGTGAAATTTCGTGGAAAAATT 59.767 36.000 13.34 0.00 37.80 1.82
1615 1637 4.742659 CCGTGTGAAATTTCGTGGAAAAAT 59.257 37.500 13.34 0.00 35.11 1.82
1616 1638 4.106197 CCGTGTGAAATTTCGTGGAAAAA 58.894 39.130 13.34 0.00 35.11 1.94
1617 1639 3.377485 TCCGTGTGAAATTTCGTGGAAAA 59.623 39.130 13.34 0.00 35.11 2.29
1618 1640 2.943690 TCCGTGTGAAATTTCGTGGAAA 59.056 40.909 13.34 0.00 35.94 3.13
1619 1641 2.562635 TCCGTGTGAAATTTCGTGGAA 58.437 42.857 13.34 0.00 0.00 3.53
1620 1642 2.242047 TCCGTGTGAAATTTCGTGGA 57.758 45.000 13.34 13.35 0.00 4.02
1621 1643 2.289547 ACTTCCGTGTGAAATTTCGTGG 59.710 45.455 13.34 11.47 31.06 4.94
1622 1644 3.602390 ACTTCCGTGTGAAATTTCGTG 57.398 42.857 13.34 3.26 31.06 4.35
1623 1645 4.624015 TCTACTTCCGTGTGAAATTTCGT 58.376 39.130 13.34 5.23 31.06 3.85
1624 1646 5.779806 ATCTACTTCCGTGTGAAATTTCG 57.220 39.130 13.34 2.06 31.06 3.46
1625 1647 6.314784 CCAATCTACTTCCGTGTGAAATTTC 58.685 40.000 11.41 11.41 31.06 2.17
1626 1648 5.183140 CCCAATCTACTTCCGTGTGAAATTT 59.817 40.000 0.00 0.00 31.06 1.82
1627 1649 4.700213 CCCAATCTACTTCCGTGTGAAATT 59.300 41.667 0.00 0.00 31.06 1.82
1628 1650 4.019681 TCCCAATCTACTTCCGTGTGAAAT 60.020 41.667 0.00 0.00 31.06 2.17
1629 1651 3.325425 TCCCAATCTACTTCCGTGTGAAA 59.675 43.478 0.00 0.00 31.06 2.69
1630 1652 2.901192 TCCCAATCTACTTCCGTGTGAA 59.099 45.455 0.00 0.00 0.00 3.18
1631 1653 2.531771 TCCCAATCTACTTCCGTGTGA 58.468 47.619 0.00 0.00 0.00 3.58
1632 1654 3.000727 GTTCCCAATCTACTTCCGTGTG 58.999 50.000 0.00 0.00 0.00 3.82
1633 1655 2.027469 GGTTCCCAATCTACTTCCGTGT 60.027 50.000 0.00 0.00 0.00 4.49
1634 1656 2.629051 GGTTCCCAATCTACTTCCGTG 58.371 52.381 0.00 0.00 0.00 4.94
1635 1657 1.558294 GGGTTCCCAATCTACTTCCGT 59.442 52.381 2.59 0.00 0.00 4.69
1636 1658 1.557832 TGGGTTCCCAATCTACTTCCG 59.442 52.381 8.26 0.00 32.48 4.30
1637 1659 3.010250 ACTTGGGTTCCCAATCTACTTCC 59.990 47.826 21.61 0.00 44.07 3.46
1638 1660 4.302559 ACTTGGGTTCCCAATCTACTTC 57.697 45.455 21.61 0.00 44.07 3.01
1639 1661 4.741928 AACTTGGGTTCCCAATCTACTT 57.258 40.909 21.61 7.50 44.07 2.24
1640 1662 4.105697 TCAAACTTGGGTTCCCAATCTACT 59.894 41.667 21.61 4.81 44.07 2.57
1641 1663 4.403734 TCAAACTTGGGTTCCCAATCTAC 58.596 43.478 21.61 0.00 44.07 2.59
1642 1664 4.733077 TCAAACTTGGGTTCCCAATCTA 57.267 40.909 21.61 2.08 44.07 1.98
1643 1665 3.611025 TCAAACTTGGGTTCCCAATCT 57.389 42.857 21.61 10.45 44.07 2.40
1644 1666 5.069119 GGATATCAAACTTGGGTTCCCAATC 59.931 44.000 21.61 13.83 44.07 2.67
1645 1667 4.962362 GGATATCAAACTTGGGTTCCCAAT 59.038 41.667 21.61 9.93 44.07 3.16
1646 1668 4.349365 GGATATCAAACTTGGGTTCCCAA 58.651 43.478 20.37 20.37 43.07 4.12
1647 1669 3.309556 GGGATATCAAACTTGGGTTCCCA 60.310 47.826 6.46 6.46 38.51 4.37
1648 1670 3.296854 GGGATATCAAACTTGGGTTCCC 58.703 50.000 4.83 0.12 34.81 3.97
1649 1671 3.296854 GGGGATATCAAACTTGGGTTCC 58.703 50.000 4.83 0.00 34.14 3.62
1650 1672 3.976015 TGGGGATATCAAACTTGGGTTC 58.024 45.455 4.83 0.00 34.14 3.62
1651 1673 4.412060 TTGGGGATATCAAACTTGGGTT 57.588 40.909 4.83 0.00 37.24 4.11
1652 1674 4.412060 TTTGGGGATATCAAACTTGGGT 57.588 40.909 4.83 0.00 0.00 4.51
1653 1675 5.955961 AATTTGGGGATATCAAACTTGGG 57.044 39.130 4.83 0.00 37.00 4.12
1654 1676 6.945218 TGAAATTTGGGGATATCAAACTTGG 58.055 36.000 4.83 0.00 37.00 3.61
1655 1677 7.839907 TCTGAAATTTGGGGATATCAAACTTG 58.160 34.615 4.83 0.00 37.00 3.16
1656 1678 8.613922 ATCTGAAATTTGGGGATATCAAACTT 57.386 30.769 4.83 0.00 37.00 2.66
1657 1679 8.613922 AATCTGAAATTTGGGGATATCAAACT 57.386 30.769 4.83 0.00 37.00 2.66
1658 1680 9.671279 AAAATCTGAAATTTGGGGATATCAAAC 57.329 29.630 4.83 0.00 37.00 2.93
1705 1727 9.496873 CACACCCCTATACGAAAAATAATCATA 57.503 33.333 0.00 0.00 0.00 2.15
1706 1728 7.447238 CCACACCCCTATACGAAAAATAATCAT 59.553 37.037 0.00 0.00 0.00 2.45
1707 1729 6.768861 CCACACCCCTATACGAAAAATAATCA 59.231 38.462 0.00 0.00 0.00 2.57
1708 1730 6.993902 TCCACACCCCTATACGAAAAATAATC 59.006 38.462 0.00 0.00 0.00 1.75
1709 1731 6.902408 TCCACACCCCTATACGAAAAATAAT 58.098 36.000 0.00 0.00 0.00 1.28
1710 1732 6.310764 TCCACACCCCTATACGAAAAATAA 57.689 37.500 0.00 0.00 0.00 1.40
1711 1733 5.685599 GCTCCACACCCCTATACGAAAAATA 60.686 44.000 0.00 0.00 0.00 1.40
1712 1734 4.777463 CTCCACACCCCTATACGAAAAAT 58.223 43.478 0.00 0.00 0.00 1.82
1713 1735 3.620472 GCTCCACACCCCTATACGAAAAA 60.620 47.826 0.00 0.00 0.00 1.94
1714 1736 2.093341 GCTCCACACCCCTATACGAAAA 60.093 50.000 0.00 0.00 0.00 2.29
1715 1737 1.483415 GCTCCACACCCCTATACGAAA 59.517 52.381 0.00 0.00 0.00 3.46
1716 1738 1.117150 GCTCCACACCCCTATACGAA 58.883 55.000 0.00 0.00 0.00 3.85
1717 1739 0.032912 TGCTCCACACCCCTATACGA 60.033 55.000 0.00 0.00 0.00 3.43
1718 1740 0.104304 GTGCTCCACACCCCTATACG 59.896 60.000 0.00 0.00 44.02 3.06
1728 1750 3.640407 GCTCCTGGGTGCTCCACA 61.640 66.667 7.20 1.73 41.46 4.17
1729 1751 3.325753 AGCTCCTGGGTGCTCCAC 61.326 66.667 10.00 0.00 40.37 4.02
1741 1763 3.691609 CAGGAAAAATACACAGGAGCTCC 59.308 47.826 26.22 26.22 0.00 4.70
1742 1764 4.327680 ACAGGAAAAATACACAGGAGCTC 58.672 43.478 4.71 4.71 0.00 4.09
1743 1765 4.373156 ACAGGAAAAATACACAGGAGCT 57.627 40.909 0.00 0.00 0.00 4.09
1744 1766 4.762251 AGAACAGGAAAAATACACAGGAGC 59.238 41.667 0.00 0.00 0.00 4.70
1745 1767 6.072452 GGAAGAACAGGAAAAATACACAGGAG 60.072 42.308 0.00 0.00 0.00 3.69
1746 1768 5.768164 GGAAGAACAGGAAAAATACACAGGA 59.232 40.000 0.00 0.00 0.00 3.86
1747 1769 5.534654 TGGAAGAACAGGAAAAATACACAGG 59.465 40.000 0.00 0.00 0.00 4.00
1748 1770 6.633500 TGGAAGAACAGGAAAAATACACAG 57.367 37.500 0.00 0.00 0.00 3.66
1749 1771 5.009610 GCTGGAAGAACAGGAAAAATACACA 59.990 40.000 0.00 0.00 38.90 3.72
1750 1772 5.009610 TGCTGGAAGAACAGGAAAAATACAC 59.990 40.000 0.00 0.00 35.80 2.90
1751 1773 5.136828 TGCTGGAAGAACAGGAAAAATACA 58.863 37.500 0.00 0.00 35.80 2.29
1752 1774 5.241728 ACTGCTGGAAGAACAGGAAAAATAC 59.758 40.000 0.00 0.00 38.38 1.89
1753 1775 5.385198 ACTGCTGGAAGAACAGGAAAAATA 58.615 37.500 0.00 0.00 38.38 1.40
1754 1776 4.218312 ACTGCTGGAAGAACAGGAAAAAT 58.782 39.130 0.00 0.00 38.38 1.82
1755 1777 3.631250 ACTGCTGGAAGAACAGGAAAAA 58.369 40.909 0.00 0.00 38.38 1.94
1756 1778 3.297134 ACTGCTGGAAGAACAGGAAAA 57.703 42.857 0.00 0.00 38.38 2.29
1757 1779 3.297134 AACTGCTGGAAGAACAGGAAA 57.703 42.857 0.00 0.00 38.38 3.13
1758 1780 3.297134 AAACTGCTGGAAGAACAGGAA 57.703 42.857 0.00 0.00 38.38 3.36
1759 1781 2.951642 CAAAACTGCTGGAAGAACAGGA 59.048 45.455 0.00 0.00 38.90 3.86
1760 1782 2.689983 ACAAAACTGCTGGAAGAACAGG 59.310 45.455 0.00 0.00 38.90 4.00
1761 1783 3.378112 TCACAAAACTGCTGGAAGAACAG 59.622 43.478 0.00 0.00 41.41 3.16
1783 1809 6.432472 GGTCTCTGAAAATTCCATTTGAGTCT 59.568 38.462 0.00 0.00 31.77 3.24
1788 1814 6.647895 CCAAAGGTCTCTGAAAATTCCATTTG 59.352 38.462 0.00 0.00 31.77 2.32
1801 1827 5.810095 AGTTTAGATTCCCAAAGGTCTCTG 58.190 41.667 0.00 0.00 0.00 3.35
1853 1880 8.814038 AAAGAGGCAATTGAAATATCTACAGT 57.186 30.769 10.34 0.00 0.00 3.55
1870 1897 5.180492 CACCTGTACGATTTTTAAAGAGGCA 59.820 40.000 0.00 0.00 0.00 4.75
1875 1902 7.857569 TCAGAACACCTGTACGATTTTTAAAG 58.142 34.615 0.00 0.00 43.38 1.85
1880 1907 6.877611 AATTCAGAACACCTGTACGATTTT 57.122 33.333 0.00 0.00 43.38 1.82
1884 1911 5.209818 AGAAATTCAGAACACCTGTACGA 57.790 39.130 0.00 0.00 43.38 3.43
1890 1917 8.697507 AAAGTATGAAGAAATTCAGAACACCT 57.302 30.769 0.00 0.00 34.02 4.00
1905 1932 7.611855 AGTCAAAACATAGGGGAAAGTATGAAG 59.388 37.037 0.00 0.00 32.03 3.02
1916 1943 9.847224 AACATACTAATAGTCAAAACATAGGGG 57.153 33.333 0.00 0.00 0.00 4.79
1944 1999 9.327628 CAGATTTTGACATCAGATCAGATAACT 57.672 33.333 0.00 0.00 0.00 2.24
1948 2003 8.803397 TTTCAGATTTTGACATCAGATCAGAT 57.197 30.769 0.00 0.00 34.94 2.90
1952 2007 9.903682 TTTTCTTTCAGATTTTGACATCAGATC 57.096 29.630 0.00 0.00 34.94 2.75
1964 2019 9.956720 CAGACAGTACAATTTTCTTTCAGATTT 57.043 29.630 0.00 0.00 0.00 2.17
1968 2023 9.651718 GTTACAGACAGTACAATTTTCTTTCAG 57.348 33.333 0.00 0.00 30.91 3.02
1970 2025 9.997482 TTGTTACAGACAGTACAATTTTCTTTC 57.003 29.630 0.00 0.00 39.94 2.62
1983 2038 7.581213 TTGGATCAAATTTGTTACAGACAGT 57.419 32.000 17.47 0.00 39.94 3.55
2037 2092 7.393234 CAGATTCTTGTATGGAACTTTAACCCA 59.607 37.037 0.00 0.00 0.00 4.51
2071 2135 9.959721 TTCCTTACAGCTCATAGTTTCTTAATT 57.040 29.630 0.00 0.00 0.00 1.40
2072 2136 9.959721 TTTCCTTACAGCTCATAGTTTCTTAAT 57.040 29.630 0.00 0.00 0.00 1.40
2073 2137 9.216117 GTTTCCTTACAGCTCATAGTTTCTTAA 57.784 33.333 0.00 0.00 0.00 1.85
2074 2138 7.822822 GGTTTCCTTACAGCTCATAGTTTCTTA 59.177 37.037 0.00 0.00 0.00 2.10
2092 2156 4.870021 AGAAGCCTATCATGGTTTCCTT 57.130 40.909 6.53 0.00 44.85 3.36
2099 2163 7.976175 GGAACTTTTAAAAGAAGCCTATCATGG 59.024 37.037 29.97 4.09 39.31 3.66
2111 2175 6.287525 CCAAAGCATGGGAACTTTTAAAAGA 58.712 36.000 29.97 11.18 46.27 2.52
2112 2176 6.544038 CCAAAGCATGGGAACTTTTAAAAG 57.456 37.500 23.38 23.38 46.27 2.27
2128 2192 5.476599 AGTTTATGTTGACATAGCCAAAGCA 59.523 36.000 4.24 0.00 39.69 3.91
2133 2197 5.584649 GCACTAGTTTATGTTGACATAGCCA 59.415 40.000 0.00 0.00 39.69 4.75
2134 2198 5.584649 TGCACTAGTTTATGTTGACATAGCC 59.415 40.000 0.00 0.57 39.69 3.93
2180 2247 9.612066 GAATCATTCTCCAAGAAGAGATTAAGT 57.388 33.333 14.77 1.24 42.38 2.24
2195 2262 9.567848 GAGAAATCGACTATAGAATCATTCTCC 57.432 37.037 19.77 10.30 41.14 3.71
2221 2288 2.279582 AGCCGAGATACACGAGTTTG 57.720 50.000 0.00 0.00 0.00 2.93
2223 2290 2.093106 AGAAGCCGAGATACACGAGTT 58.907 47.619 0.00 0.00 0.00 3.01
2249 2316 8.621286 AGTGTTCTTCGTCAAAACAAGAATAAT 58.379 29.630 0.00 0.00 36.19 1.28
2288 2362 0.405198 TCCAGCCAGAATTCCTGCAA 59.595 50.000 16.48 2.33 41.57 4.08
2289 2363 0.034767 CTCCAGCCAGAATTCCTGCA 60.035 55.000 16.48 0.00 41.57 4.41
2303 2377 2.125350 GCCGGTGCTCTTCTCCAG 60.125 66.667 1.90 0.00 33.53 3.86
2338 2412 2.342910 TCACTAACGCTTTCGAGGAC 57.657 50.000 0.00 0.00 39.41 3.85
2348 2422 3.050619 CGATCCCTGTTATCACTAACGC 58.949 50.000 0.00 0.00 40.15 4.84
2353 2427 3.960755 TGTCATCGATCCCTGTTATCACT 59.039 43.478 0.00 0.00 0.00 3.41
2362 2436 2.692709 ATCTCCTGTCATCGATCCCT 57.307 50.000 0.00 0.00 0.00 4.20
2389 2463 1.267806 GACTCTGTGTTTGGCATGTGG 59.732 52.381 0.00 0.00 0.00 4.17
2416 2490 8.974238 TGGAAGCAAGATCTGAATTCAAAATAT 58.026 29.630 9.88 0.98 0.00 1.28
2417 2491 8.352137 TGGAAGCAAGATCTGAATTCAAAATA 57.648 30.769 9.88 0.00 0.00 1.40
2474 2548 9.944376 AGTAGTATAGACAAAGCAAAAGATGAA 57.056 29.630 0.00 0.00 0.00 2.57
2496 2570 7.966753 TGCGACACTCAAAATAACTACTAGTAG 59.033 37.037 25.30 25.30 39.04 2.57
2499 2573 6.584942 TGTGCGACACTCAAAATAACTACTAG 59.415 38.462 10.54 0.00 35.11 2.57
2502 2576 5.371629 GTGTGCGACACTCAAAATAACTAC 58.628 41.667 10.87 0.00 45.27 2.73
2517 2591 3.243267 ACAAATTAAACAGGGTGTGCGAC 60.243 43.478 0.00 0.00 0.00 5.19
2520 2594 5.447624 AGTACAAATTAAACAGGGTGTGC 57.552 39.130 0.00 0.00 0.00 4.57
2525 2599 8.013378 CGTTCAACTAGTACAAATTAAACAGGG 58.987 37.037 0.00 0.00 0.00 4.45
2546 2626 8.958119 AAGCTAATGGTAGATATTTTCGTTCA 57.042 30.769 0.00 0.00 0.00 3.18
2689 2771 2.676076 TGATCACATCATCGGTATGCG 58.324 47.619 0.00 0.00 33.59 4.73
2695 2777 2.064014 CGTCCATGATCACATCATCGG 58.936 52.381 0.00 3.22 46.62 4.18
2702 2784 1.450134 GCCAGCGTCCATGATCACA 60.450 57.895 0.00 0.00 0.00 3.58
2705 2787 0.810648 TTTTGCCAGCGTCCATGATC 59.189 50.000 0.00 0.00 0.00 2.92
2724 2806 6.542821 TCAACCAACTATCTCCTGTCATTTT 58.457 36.000 0.00 0.00 0.00 1.82
2727 2809 4.780021 ACTCAACCAACTATCTCCTGTCAT 59.220 41.667 0.00 0.00 0.00 3.06
2743 2825 4.143179 CCGTCGAAAAATCTGTACTCAACC 60.143 45.833 0.00 0.00 0.00 3.77
2746 2828 4.482386 CTCCGTCGAAAAATCTGTACTCA 58.518 43.478 0.00 0.00 0.00 3.41
2747 2829 3.858238 CCTCCGTCGAAAAATCTGTACTC 59.142 47.826 0.00 0.00 0.00 2.59
2748 2830 3.257624 ACCTCCGTCGAAAAATCTGTACT 59.742 43.478 0.00 0.00 0.00 2.73
2749 2831 3.582780 ACCTCCGTCGAAAAATCTGTAC 58.417 45.455 0.00 0.00 0.00 2.90
2750 2832 3.947910 ACCTCCGTCGAAAAATCTGTA 57.052 42.857 0.00 0.00 0.00 2.74
2751 2833 2.833631 ACCTCCGTCGAAAAATCTGT 57.166 45.000 0.00 0.00 0.00 3.41
2752 2834 4.106029 TCTACCTCCGTCGAAAAATCTG 57.894 45.455 0.00 0.00 0.00 2.90
2753 2835 4.796038 TTCTACCTCCGTCGAAAAATCT 57.204 40.909 0.00 0.00 0.00 2.40
2754 2836 6.418585 AATTTCTACCTCCGTCGAAAAATC 57.581 37.500 0.00 0.00 37.26 2.17
2755 2837 6.812879 AAATTTCTACCTCCGTCGAAAAAT 57.187 33.333 0.00 0.00 37.26 1.82
2756 2838 6.260493 TGAAAATTTCTACCTCCGTCGAAAAA 59.740 34.615 7.29 0.00 37.26 1.94
2805 2887 6.834168 AGGGTTGACACGATATTTGAAATT 57.166 33.333 0.00 0.00 0.00 1.82
2810 2892 4.628333 ACGTAAGGGTTGACACGATATTTG 59.372 41.667 0.00 0.00 46.39 2.32
2841 2923 7.255569 TGCATGATCTGATGAAGATTTCAAAC 58.744 34.615 0.00 0.00 46.12 2.93
2850 2932 4.510340 TGTCGATTGCATGATCTGATGAAG 59.490 41.667 0.00 0.00 0.00 3.02
2868 2950 5.231702 TGGTCGTATTGAAAGATTTGTCGA 58.768 37.500 0.00 0.00 0.00 4.20
2870 2952 6.664515 TGTTGGTCGTATTGAAAGATTTGTC 58.335 36.000 0.00 0.00 0.00 3.18
2878 2961 6.642707 AAGGATTTGTTGGTCGTATTGAAA 57.357 33.333 0.00 0.00 0.00 2.69
2881 2964 8.836413 ACATATAAGGATTTGTTGGTCGTATTG 58.164 33.333 0.00 0.00 0.00 1.90
2957 3057 6.642733 AAGGTTCAGATTTCCTTCAGGATA 57.357 37.500 0.00 0.00 44.98 2.59
3478 3595 2.096466 CACGATCAAGCGCACAAACTAA 60.096 45.455 11.47 0.00 33.86 2.24
3534 3661 1.540267 TCACGACCTACTGCTTCACTC 59.460 52.381 0.00 0.00 0.00 3.51
3535 3662 1.269998 GTCACGACCTACTGCTTCACT 59.730 52.381 0.00 0.00 0.00 3.41
3555 3682 1.372251 AAGCACTGACGCTCACGAG 60.372 57.895 0.00 0.00 42.89 4.18
3556 3683 1.661509 CAAGCACTGACGCTCACGA 60.662 57.895 0.00 0.00 42.89 4.35
3557 3684 2.849007 CAAGCACTGACGCTCACG 59.151 61.111 0.00 0.00 42.89 4.35
3558 3685 1.502163 AAGCAAGCACTGACGCTCAC 61.502 55.000 0.00 0.00 42.89 3.51
3559 3686 1.224069 GAAGCAAGCACTGACGCTCA 61.224 55.000 0.00 0.00 42.89 4.26
3560 3687 1.224069 TGAAGCAAGCACTGACGCTC 61.224 55.000 0.00 0.00 42.89 5.03
3561 3688 1.226686 CTGAAGCAAGCACTGACGCT 61.227 55.000 0.00 0.00 46.67 5.07
3573 3701 1.899814 ACCAGTCGGTAATCTGAAGCA 59.100 47.619 0.00 0.00 46.71 3.91
3625 3753 6.134535 ACAACCCTGATTTGTAGGAATGTA 57.865 37.500 0.00 0.00 37.52 2.29
3677 3805 5.407387 GTGCACTTTGAAAAATGCTCATGAT 59.593 36.000 10.32 0.00 38.90 2.45
3891 4035 4.705337 TGAACACACCCTTGTACAAAAC 57.295 40.909 10.03 0.00 33.30 2.43
3943 4088 5.417580 GTGTATTTCTCTGGTCTCTCTCTGT 59.582 44.000 0.00 0.00 0.00 3.41
3944 4089 5.448496 CGTGTATTTCTCTGGTCTCTCTCTG 60.448 48.000 0.00 0.00 0.00 3.35
4185 4339 7.273381 CACGTGTTTTCTGAAAAGAAAGTTGAT 59.727 33.333 15.39 0.00 38.76 2.57
4186 4340 6.580791 CACGTGTTTTCTGAAAAGAAAGTTGA 59.419 34.615 15.39 0.00 38.76 3.18
4188 4342 6.674066 TCACGTGTTTTCTGAAAAGAAAGTT 58.326 32.000 16.51 0.00 38.76 2.66
4257 4411 7.328249 ACCATAAATGTTCACGTATTTGCAAAG 59.672 33.333 18.19 6.69 0.00 2.77
4376 4530 9.928236 CGTTTTGGAAAAATGTTCATGTAAAAT 57.072 25.926 0.00 0.00 0.00 1.82
4401 4560 8.987599 ACATATTTAAAAGATATGTTCGTGCG 57.012 30.769 6.99 0.00 44.26 5.34
4427 4586 6.778834 TGTCCATCACATTGATATTGCTTT 57.221 33.333 0.00 0.00 34.28 3.51
4568 6799 1.967066 CCCATTAACACAGGTTGGCAA 59.033 47.619 0.00 0.00 37.88 4.52
4597 6828 8.575565 TGAACTCGATCAAGCTACATTATTAC 57.424 34.615 0.00 0.00 0.00 1.89
4631 6863 1.738099 CGGCCCTCTCTGTTTCACG 60.738 63.158 0.00 0.00 0.00 4.35
4634 6866 0.174617 CTCTCGGCCCTCTCTGTTTC 59.825 60.000 0.00 0.00 0.00 2.78
4746 6978 8.422566 GCAGAGACCAGGTATAATACTTAAAGT 58.577 37.037 0.00 0.00 0.00 2.66
4747 6979 8.421784 TGCAGAGACCAGGTATAATACTTAAAG 58.578 37.037 0.00 0.00 0.00 1.85
4748 6980 8.313944 TGCAGAGACCAGGTATAATACTTAAA 57.686 34.615 0.00 0.00 0.00 1.52
4749 6981 7.907841 TGCAGAGACCAGGTATAATACTTAA 57.092 36.000 0.00 0.00 0.00 1.85
4750 6982 9.596308 TTATGCAGAGACCAGGTATAATACTTA 57.404 33.333 0.00 0.00 0.00 2.24
4751 6983 8.368668 GTTATGCAGAGACCAGGTATAATACTT 58.631 37.037 0.00 0.00 0.00 2.24
4752 6984 7.730784 AGTTATGCAGAGACCAGGTATAATACT 59.269 37.037 0.00 0.00 0.00 2.12
4753 6985 7.897864 AGTTATGCAGAGACCAGGTATAATAC 58.102 38.462 0.00 0.00 0.00 1.89
4754 6986 9.596308 TTAGTTATGCAGAGACCAGGTATAATA 57.404 33.333 0.00 0.00 0.00 0.98
4755 6987 8.492415 TTAGTTATGCAGAGACCAGGTATAAT 57.508 34.615 0.00 0.00 0.00 1.28
4756 6988 7.907841 TTAGTTATGCAGAGACCAGGTATAA 57.092 36.000 0.00 0.00 0.00 0.98
4757 6989 7.907841 TTTAGTTATGCAGAGACCAGGTATA 57.092 36.000 0.00 0.00 0.00 1.47
4758 6990 6.808321 TTTAGTTATGCAGAGACCAGGTAT 57.192 37.500 0.00 0.00 0.00 2.73
4759 6991 6.614694 TTTTAGTTATGCAGAGACCAGGTA 57.385 37.500 0.00 0.00 0.00 3.08
4760 6992 5.499004 TTTTAGTTATGCAGAGACCAGGT 57.501 39.130 0.00 0.00 0.00 4.00
4761 6993 5.220931 GCATTTTAGTTATGCAGAGACCAGG 60.221 44.000 0.00 0.00 45.93 4.45
4762 6994 5.814783 GCATTTTAGTTATGCAGAGACCAG 58.185 41.667 0.00 0.00 45.93 4.00
4763 6995 5.818136 GCATTTTAGTTATGCAGAGACCA 57.182 39.130 0.00 0.00 45.93 4.02
4771 7003 6.777526 TGGTTGTTTGCATTTTAGTTATGC 57.222 33.333 0.00 0.00 46.63 3.14
4772 7004 8.136057 TGTTGGTTGTTTGCATTTTAGTTATG 57.864 30.769 0.00 0.00 0.00 1.90
4773 7005 8.723942 TTGTTGGTTGTTTGCATTTTAGTTAT 57.276 26.923 0.00 0.00 0.00 1.89
4774 7006 8.547967 TTTGTTGGTTGTTTGCATTTTAGTTA 57.452 26.923 0.00 0.00 0.00 2.24
4775 7007 7.440523 TTTGTTGGTTGTTTGCATTTTAGTT 57.559 28.000 0.00 0.00 0.00 2.24
4776 7008 7.301789 GTTTTGTTGGTTGTTTGCATTTTAGT 58.698 30.769 0.00 0.00 0.00 2.24
4777 7009 6.744993 GGTTTTGTTGGTTGTTTGCATTTTAG 59.255 34.615 0.00 0.00 0.00 1.85
4778 7010 6.349363 GGGTTTTGTTGGTTGTTTGCATTTTA 60.349 34.615 0.00 0.00 0.00 1.52
4779 7011 5.465051 GGTTTTGTTGGTTGTTTGCATTTT 58.535 33.333 0.00 0.00 0.00 1.82
4780 7012 4.082517 GGGTTTTGTTGGTTGTTTGCATTT 60.083 37.500 0.00 0.00 0.00 2.32
4781 7013 3.441922 GGGTTTTGTTGGTTGTTTGCATT 59.558 39.130 0.00 0.00 0.00 3.56
4782 7014 3.013219 GGGTTTTGTTGGTTGTTTGCAT 58.987 40.909 0.00 0.00 0.00 3.96
4783 7015 2.039084 AGGGTTTTGTTGGTTGTTTGCA 59.961 40.909 0.00 0.00 0.00 4.08
4784 7016 2.675844 GAGGGTTTTGTTGGTTGTTTGC 59.324 45.455 0.00 0.00 0.00 3.68
4785 7017 3.682377 GTGAGGGTTTTGTTGGTTGTTTG 59.318 43.478 0.00 0.00 0.00 2.93
4786 7018 3.615351 CGTGAGGGTTTTGTTGGTTGTTT 60.615 43.478 0.00 0.00 0.00 2.83
4787 7019 2.094442 CGTGAGGGTTTTGTTGGTTGTT 60.094 45.455 0.00 0.00 0.00 2.83
4788 7020 1.474879 CGTGAGGGTTTTGTTGGTTGT 59.525 47.619 0.00 0.00 0.00 3.32
4789 7021 1.746220 TCGTGAGGGTTTTGTTGGTTG 59.254 47.619 0.00 0.00 0.00 3.77
4790 7022 1.746787 GTCGTGAGGGTTTTGTTGGTT 59.253 47.619 0.00 0.00 0.00 3.67
4791 7023 1.340211 TGTCGTGAGGGTTTTGTTGGT 60.340 47.619 0.00 0.00 0.00 3.67
4792 7024 1.384525 TGTCGTGAGGGTTTTGTTGG 58.615 50.000 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.