Multiple sequence alignment - TraesCS5A01G525500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G525500 chr5A 100.000 3086 0 0 1 3086 685871509 685868424 0.000000e+00 5699.0
1 TraesCS5A01G525500 chr4D 92.083 1200 57 16 633 1823 502538578 502537408 0.000000e+00 1655.0
2 TraesCS5A01G525500 chr4D 89.961 1295 82 25 1820 3086 502537145 502535871 0.000000e+00 1628.0
3 TraesCS5A01G525500 chr4D 93.714 175 9 2 102 276 502541520 502541348 8.490000e-66 261.0
4 TraesCS5A01G525500 chr4D 92.157 102 4 3 523 624 502541296 502541199 1.150000e-29 141.0
5 TraesCS5A01G525500 chr3B 79.189 1110 147 52 993 2087 580220316 580221356 0.000000e+00 693.0
6 TraesCS5A01G525500 chr3D 77.848 1106 152 51 993 2087 442775190 442776213 1.580000e-167 599.0
7 TraesCS5A01G525500 chr3A 79.278 526 74 23 993 1517 583978339 583978830 4.930000e-88 335.0
8 TraesCS5A01G525500 chr3A 99.405 168 1 0 274 441 12424429 12424262 3.870000e-79 305.0
9 TraesCS5A01G525500 chr3A 97.674 172 4 0 275 446 89152585 89152756 2.330000e-76 296.0
10 TraesCS5A01G525500 chr3A 96.111 180 5 2 275 453 202826956 202826778 3.010000e-75 292.0
11 TraesCS5A01G525500 chr3A 96.111 180 4 1 274 450 370246056 370245877 1.080000e-74 291.0
12 TraesCS5A01G525500 chr4B 96.721 183 6 0 274 456 143898149 143897967 3.870000e-79 305.0
13 TraesCS5A01G525500 chr7B 97.143 175 5 0 268 442 730812144 730811970 2.330000e-76 296.0
14 TraesCS5A01G525500 chr7A 96.610 177 6 0 267 443 521961352 521961176 8.370000e-76 294.0
15 TraesCS5A01G525500 chr6B 96.571 175 5 1 268 441 114057030 114057204 3.890000e-74 289.0
16 TraesCS5A01G525500 chr2B 93.651 189 10 2 266 453 794234780 794234593 6.520000e-72 281.0
17 TraesCS5A01G525500 chr2A 96.667 60 2 0 2702 2761 695141775 695141834 1.960000e-17 100.0
18 TraesCS5A01G525500 chr2A 90.625 64 6 0 2699 2762 756091847 756091910 5.480000e-13 86.1
19 TraesCS5A01G525500 chr2A 90.476 63 4 2 2708 2769 633531631 633531692 7.090000e-12 82.4
20 TraesCS5A01G525500 chr2A 89.062 64 5 1 2699 2762 756033771 756033832 9.170000e-11 78.7
21 TraesCS5A01G525500 chr2A 89.062 64 5 1 2699 2762 756063307 756063368 9.170000e-11 78.7
22 TraesCS5A01G525500 chr2A 92.593 54 4 0 2709 2762 756997341 756997288 9.170000e-11 78.7
23 TraesCS5A01G525500 chr7D 88.732 71 7 1 2700 2769 379831368 379831298 5.480000e-13 86.1
24 TraesCS5A01G525500 chrUn 89.062 64 5 1 2699 2762 180894935 180894996 9.170000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G525500 chr5A 685868424 685871509 3085 True 5699.00 5699 100.00000 1 3086 1 chr5A.!!$R1 3085
1 TraesCS5A01G525500 chr4D 502535871 502541520 5649 True 921.25 1655 91.97875 102 3086 4 chr4D.!!$R1 2984
2 TraesCS5A01G525500 chr3B 580220316 580221356 1040 False 693.00 693 79.18900 993 2087 1 chr3B.!!$F1 1094
3 TraesCS5A01G525500 chr3D 442775190 442776213 1023 False 599.00 599 77.84800 993 2087 1 chr3D.!!$F1 1094

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 266 0.476338 TTGCTGTTTCCAGGTGGCTA 59.524 50.0 0.0 0.0 39.22 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 5170 0.036294 AACTAGAAACAGGCCTCCGC 60.036 55.0 0.0 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.609555 ACTCGGATGTAATCTCCTCGC 59.390 52.381 0.00 0.00 44.71 5.03
21 22 1.609072 CTCGGATGTAATCTCCTCGCA 59.391 52.381 0.00 0.00 44.71 5.10
22 23 2.028876 TCGGATGTAATCTCCTCGCAA 58.971 47.619 0.00 0.00 44.71 4.85
23 24 2.429250 TCGGATGTAATCTCCTCGCAAA 59.571 45.455 0.00 0.00 44.71 3.68
24 25 3.118920 TCGGATGTAATCTCCTCGCAAAA 60.119 43.478 0.00 0.00 44.71 2.44
25 26 3.621268 CGGATGTAATCTCCTCGCAAAAA 59.379 43.478 0.00 0.00 44.71 1.94
55 56 4.313277 ACGGATGTGATCACTATGTCTG 57.687 45.455 25.55 21.68 0.00 3.51
56 57 3.954258 ACGGATGTGATCACTATGTCTGA 59.046 43.478 25.55 4.07 0.00 3.27
57 58 4.586421 ACGGATGTGATCACTATGTCTGAT 59.414 41.667 25.55 8.92 0.00 2.90
58 59 5.069648 ACGGATGTGATCACTATGTCTGATT 59.930 40.000 25.55 7.15 0.00 2.57
59 60 5.632764 CGGATGTGATCACTATGTCTGATTC 59.367 44.000 25.55 7.03 0.00 2.52
60 61 6.519382 GGATGTGATCACTATGTCTGATTCA 58.481 40.000 25.55 1.91 0.00 2.57
61 62 7.160049 GGATGTGATCACTATGTCTGATTCAT 58.840 38.462 25.55 6.84 31.62 2.57
62 63 7.117956 GGATGTGATCACTATGTCTGATTCATG 59.882 40.741 25.55 0.00 30.38 3.07
63 64 7.116075 TGTGATCACTATGTCTGATTCATGA 57.884 36.000 25.55 0.00 0.00 3.07
64 65 7.558604 TGTGATCACTATGTCTGATTCATGAA 58.441 34.615 25.55 11.26 0.00 2.57
65 66 8.042515 TGTGATCACTATGTCTGATTCATGAAA 58.957 33.333 25.55 0.00 0.00 2.69
66 67 8.549548 GTGATCACTATGTCTGATTCATGAAAG 58.450 37.037 18.83 6.52 0.00 2.62
67 68 8.262933 TGATCACTATGTCTGATTCATGAAAGT 58.737 33.333 13.09 5.80 0.00 2.66
68 69 9.107177 GATCACTATGTCTGATTCATGAAAGTT 57.893 33.333 13.09 0.00 0.00 2.66
69 70 8.484641 TCACTATGTCTGATTCATGAAAGTTC 57.515 34.615 13.09 6.41 0.00 3.01
70 71 7.550551 TCACTATGTCTGATTCATGAAAGTTCC 59.449 37.037 13.09 1.79 0.00 3.62
71 72 7.551974 CACTATGTCTGATTCATGAAAGTTCCT 59.448 37.037 13.09 0.00 0.00 3.36
72 73 8.105829 ACTATGTCTGATTCATGAAAGTTCCTT 58.894 33.333 13.09 0.00 0.00 3.36
73 74 7.771927 ATGTCTGATTCATGAAAGTTCCTTT 57.228 32.000 13.09 0.00 36.29 3.11
74 75 7.206981 TGTCTGATTCATGAAAGTTCCTTTC 57.793 36.000 13.09 9.27 46.88 2.62
75 76 6.207417 TGTCTGATTCATGAAAGTTCCTTTCC 59.793 38.462 13.09 0.00 46.36 3.13
76 77 6.432472 GTCTGATTCATGAAAGTTCCTTTCCT 59.568 38.462 13.09 2.26 46.36 3.36
77 78 7.607991 GTCTGATTCATGAAAGTTCCTTTCCTA 59.392 37.037 13.09 0.00 46.36 2.94
78 79 7.607991 TCTGATTCATGAAAGTTCCTTTCCTAC 59.392 37.037 13.09 2.25 46.36 3.18
79 80 7.230747 TGATTCATGAAAGTTCCTTTCCTACA 58.769 34.615 13.09 0.00 46.36 2.74
80 81 7.723616 TGATTCATGAAAGTTCCTTTCCTACAA 59.276 33.333 13.09 3.32 46.36 2.41
81 82 7.889873 TTCATGAAAGTTCCTTTCCTACAAA 57.110 32.000 5.45 0.00 46.36 2.83
82 83 7.889873 TCATGAAAGTTCCTTTCCTACAAAA 57.110 32.000 12.73 0.00 46.36 2.44
83 84 8.299990 TCATGAAAGTTCCTTTCCTACAAAAA 57.700 30.769 12.73 0.00 46.36 1.94
108 109 8.507524 AAGAAATTATGTACTTACTTCTGGCC 57.492 34.615 0.00 0.00 0.00 5.36
156 157 3.130164 TGTGTGCATGTTTAACAGCTTGT 59.870 39.130 16.08 0.00 0.00 3.16
182 183 4.990543 TCTTGTTCGTATCAGCAAACAG 57.009 40.909 0.00 0.00 33.54 3.16
249 250 4.272018 CAGCAGAGTGTATCCATAACTTGC 59.728 45.833 0.00 0.00 32.74 4.01
258 259 5.647658 TGTATCCATAACTTGCTGTTTCCAG 59.352 40.000 1.42 0.00 39.89 3.86
259 260 3.420893 TCCATAACTTGCTGTTTCCAGG 58.579 45.455 1.42 0.00 39.89 4.45
265 266 0.476338 TTGCTGTTTCCAGGTGGCTA 59.524 50.000 0.00 0.00 39.22 3.93
266 267 0.698238 TGCTGTTTCCAGGTGGCTAT 59.302 50.000 0.00 0.00 39.22 2.97
267 268 1.075374 TGCTGTTTCCAGGTGGCTATT 59.925 47.619 0.00 0.00 39.22 1.73
268 269 2.307392 TGCTGTTTCCAGGTGGCTATTA 59.693 45.455 0.00 0.00 39.22 0.98
269 270 3.245087 TGCTGTTTCCAGGTGGCTATTAA 60.245 43.478 0.00 0.00 39.22 1.40
270 271 3.128764 GCTGTTTCCAGGTGGCTATTAAC 59.871 47.826 0.00 0.00 39.22 2.01
271 272 4.589908 CTGTTTCCAGGTGGCTATTAACT 58.410 43.478 0.00 0.00 34.90 2.24
272 273 4.993028 TGTTTCCAGGTGGCTATTAACTT 58.007 39.130 0.00 0.00 34.44 2.66
273 274 5.007682 TGTTTCCAGGTGGCTATTAACTTC 58.992 41.667 0.00 0.00 34.44 3.01
274 275 5.222048 TGTTTCCAGGTGGCTATTAACTTCT 60.222 40.000 0.00 0.00 34.44 2.85
275 276 6.013206 TGTTTCCAGGTGGCTATTAACTTCTA 60.013 38.462 0.00 0.00 34.44 2.10
276 277 5.609533 TCCAGGTGGCTATTAACTTCTAC 57.390 43.478 0.00 0.00 34.44 2.59
277 278 5.278061 TCCAGGTGGCTATTAACTTCTACT 58.722 41.667 0.00 0.00 34.44 2.57
278 279 5.363005 TCCAGGTGGCTATTAACTTCTACTC 59.637 44.000 0.00 0.00 34.44 2.59
279 280 5.453480 CCAGGTGGCTATTAACTTCTACTCC 60.453 48.000 0.00 0.00 0.00 3.85
280 281 4.654724 AGGTGGCTATTAACTTCTACTCCC 59.345 45.833 0.00 0.00 0.00 4.30
281 282 4.654724 GGTGGCTATTAACTTCTACTCCCT 59.345 45.833 0.00 0.00 0.00 4.20
282 283 5.221481 GGTGGCTATTAACTTCTACTCCCTC 60.221 48.000 0.00 0.00 0.00 4.30
283 284 4.900054 TGGCTATTAACTTCTACTCCCTCC 59.100 45.833 0.00 0.00 0.00 4.30
284 285 4.022155 GGCTATTAACTTCTACTCCCTCCG 60.022 50.000 0.00 0.00 0.00 4.63
285 286 4.583907 GCTATTAACTTCTACTCCCTCCGT 59.416 45.833 0.00 0.00 0.00 4.69
286 287 5.068855 GCTATTAACTTCTACTCCCTCCGTT 59.931 44.000 0.00 0.00 0.00 4.44
287 288 5.595257 ATTAACTTCTACTCCCTCCGTTC 57.405 43.478 0.00 0.00 0.00 3.95
288 289 1.849977 ACTTCTACTCCCTCCGTTCC 58.150 55.000 0.00 0.00 0.00 3.62
289 290 1.358445 ACTTCTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 0.00 3.36
290 291 2.579860 ACTTCTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 0.00 2.94
291 292 3.011032 ACTTCTACTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 0.00 2.69
292 293 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
293 294 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
294 295 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
295 296 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
296 297 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
297 298 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
298 299 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
299 300 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
300 301 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
301 302 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
302 303 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
303 304 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
304 305 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
305 306 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
306 307 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
307 308 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
308 309 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
324 325 8.142994 TCTTTCTAGACATTTCAACAAGTGAC 57.857 34.615 0.00 0.00 35.39 3.67
325 326 7.987458 TCTTTCTAGACATTTCAACAAGTGACT 59.013 33.333 0.00 0.00 35.39 3.41
326 327 9.261180 CTTTCTAGACATTTCAACAAGTGACTA 57.739 33.333 0.00 0.00 35.39 2.59
327 328 8.589335 TTCTAGACATTTCAACAAGTGACTAC 57.411 34.615 0.00 0.00 35.39 2.73
328 329 7.722363 TCTAGACATTTCAACAAGTGACTACA 58.278 34.615 0.00 0.00 35.39 2.74
329 330 8.367911 TCTAGACATTTCAACAAGTGACTACAT 58.632 33.333 0.00 0.00 35.39 2.29
330 331 9.639601 CTAGACATTTCAACAAGTGACTACATA 57.360 33.333 0.00 0.00 35.39 2.29
331 332 8.311650 AGACATTTCAACAAGTGACTACATAC 57.688 34.615 0.00 0.00 35.39 2.39
332 333 7.116376 AGACATTTCAACAAGTGACTACATACG 59.884 37.037 0.00 0.00 35.39 3.06
333 334 6.147164 ACATTTCAACAAGTGACTACATACGG 59.853 38.462 0.00 0.00 35.39 4.02
334 335 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
335 336 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
336 337 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
337 338 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
338 339 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
339 340 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
340 341 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
341 342 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
342 343 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
343 344 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
344 345 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
345 346 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
346 347 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
347 348 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
348 349 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
349 350 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
350 351 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
351 352 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
352 353 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
353 354 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
354 355 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
355 356 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
429 430 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
430 431 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
431 432 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
432 433 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
433 434 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
434 435 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
435 436 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
470 471 8.470002 AGTTTTCAAATTGCTACTTGAAAGTCT 58.530 29.630 15.02 14.23 46.58 3.24
474 475 1.148310 TGCTACTTGAAAGTCTGCGC 58.852 50.000 0.00 0.00 39.71 6.09
484 485 3.568007 TGAAAGTCTGCGCCTAATTTTGT 59.432 39.130 4.18 0.00 0.00 2.83
492 493 3.115554 GCGCCTAATTTTGTGGCTTATG 58.884 45.455 0.00 0.00 44.09 1.90
493 494 3.181491 GCGCCTAATTTTGTGGCTTATGA 60.181 43.478 0.00 0.00 44.09 2.15
494 495 4.499696 GCGCCTAATTTTGTGGCTTATGAT 60.500 41.667 0.00 0.00 44.09 2.45
495 496 5.591099 CGCCTAATTTTGTGGCTTATGATT 58.409 37.500 0.00 0.00 44.09 2.57
496 497 5.687285 CGCCTAATTTTGTGGCTTATGATTC 59.313 40.000 0.00 0.00 44.09 2.52
497 498 5.985530 GCCTAATTTTGTGGCTTATGATTCC 59.014 40.000 0.00 0.00 43.05 3.01
498 499 6.406849 GCCTAATTTTGTGGCTTATGATTCCA 60.407 38.462 0.00 0.00 43.05 3.53
499 500 7.205297 CCTAATTTTGTGGCTTATGATTCCAG 58.795 38.462 0.00 0.00 0.00 3.86
500 501 6.855763 AATTTTGTGGCTTATGATTCCAGA 57.144 33.333 0.00 0.00 0.00 3.86
501 502 6.855763 ATTTTGTGGCTTATGATTCCAGAA 57.144 33.333 0.00 0.00 32.27 3.02
502 503 6.855763 TTTTGTGGCTTATGATTCCAGAAT 57.144 33.333 0.00 0.00 33.89 2.40
503 504 5.840243 TTGTGGCTTATGATTCCAGAATG 57.160 39.130 0.00 0.00 29.62 2.67
504 505 4.858850 TGTGGCTTATGATTCCAGAATGT 58.141 39.130 0.00 0.00 0.00 2.71
505 506 5.263599 TGTGGCTTATGATTCCAGAATGTT 58.736 37.500 0.00 0.00 0.00 2.71
506 507 5.125900 TGTGGCTTATGATTCCAGAATGTTG 59.874 40.000 0.00 0.00 0.00 3.33
507 508 4.098349 TGGCTTATGATTCCAGAATGTTGC 59.902 41.667 0.00 0.00 0.00 4.17
508 509 4.340381 GGCTTATGATTCCAGAATGTTGCT 59.660 41.667 0.00 0.00 0.00 3.91
509 510 5.506982 GGCTTATGATTCCAGAATGTTGCTC 60.507 44.000 0.00 0.00 0.00 4.26
510 511 5.298777 GCTTATGATTCCAGAATGTTGCTCT 59.701 40.000 0.00 0.00 0.00 4.09
511 512 6.688637 TTATGATTCCAGAATGTTGCTCTG 57.311 37.500 0.00 0.00 40.08 3.35
517 518 1.467734 CAGAATGTTGCTCTGGACAGC 59.532 52.381 0.00 0.00 37.29 4.40
526 527 4.694760 TGCTCTGGACAGCAACATATAT 57.305 40.909 0.00 0.00 46.65 0.86
527 528 5.806654 TGCTCTGGACAGCAACATATATA 57.193 39.130 0.00 0.00 46.65 0.86
528 529 5.787380 TGCTCTGGACAGCAACATATATAG 58.213 41.667 0.00 0.00 46.65 1.31
529 530 5.305386 TGCTCTGGACAGCAACATATATAGT 59.695 40.000 0.00 0.00 46.65 2.12
530 531 6.183361 TGCTCTGGACAGCAACATATATAGTT 60.183 38.462 0.00 0.00 46.65 2.24
531 532 6.708054 GCTCTGGACAGCAACATATATAGTTT 59.292 38.462 0.00 0.00 39.43 2.66
532 533 7.872993 GCTCTGGACAGCAACATATATAGTTTA 59.127 37.037 0.00 0.00 39.43 2.01
533 534 9.197694 CTCTGGACAGCAACATATATAGTTTAC 57.802 37.037 0.00 0.00 0.00 2.01
534 535 8.924303 TCTGGACAGCAACATATATAGTTTACT 58.076 33.333 0.00 0.00 0.00 2.24
549 550 5.135508 AGTTTACTATATGCTAGCCACGG 57.864 43.478 13.29 1.34 0.00 4.94
565 566 2.514824 GGCGGCCTTCCTGATGAC 60.515 66.667 12.87 0.00 0.00 3.06
571 572 2.159338 CGGCCTTCCTGATGACAATTTG 60.159 50.000 0.00 0.00 0.00 2.32
577 578 5.467035 TTCCTGATGACAATTTGGGTTTC 57.533 39.130 0.78 0.00 0.00 2.78
676 3289 5.708948 TGCCTTTGCACTAAACACAATATC 58.291 37.500 0.00 0.00 44.23 1.63
703 3316 4.637534 ACCAAATCAAGACATCGAGAATGG 59.362 41.667 0.00 0.00 39.90 3.16
710 3323 1.929836 GACATCGAGAATGGACACAGC 59.070 52.381 0.00 0.00 39.90 4.40
792 3405 7.066043 TGGATCAATAATACCGGTGTTTGTTAC 59.934 37.037 22.34 11.21 0.00 2.50
825 3438 2.490903 GCACTCATCCATGGAATATGCC 59.509 50.000 20.67 7.69 0.00 4.40
826 3439 3.813240 GCACTCATCCATGGAATATGCCT 60.813 47.826 20.67 0.00 0.00 4.75
827 3440 3.756963 CACTCATCCATGGAATATGCCTG 59.243 47.826 20.67 10.81 0.00 4.85
828 3441 3.245158 ACTCATCCATGGAATATGCCTGG 60.245 47.826 20.67 10.57 0.00 4.45
829 3442 1.822990 CATCCATGGAATATGCCTGGC 59.177 52.381 20.67 12.87 0.00 4.85
830 3443 0.852155 TCCATGGAATATGCCTGGCA 59.148 50.000 25.65 25.65 44.86 4.92
831 3444 1.217436 TCCATGGAATATGCCTGGCAA 59.783 47.619 27.24 15.21 43.62 4.52
832 3445 1.616865 CCATGGAATATGCCTGGCAAG 59.383 52.381 27.24 7.93 43.62 4.01
879 3492 6.314018 TGACATCTTGTTTATTGTTGATCGC 58.686 36.000 0.00 0.00 0.00 4.58
952 3565 8.580720 CAAGAGCAACAGGACAGTACTATATAT 58.419 37.037 0.00 0.00 0.00 0.86
978 3591 7.992608 TCATTATATGCATACTGTTGTCTTGGT 59.007 33.333 8.99 0.00 0.00 3.67
1046 3662 0.583438 CCGATCAACCATGTCGATGC 59.417 55.000 4.39 0.00 34.29 3.91
1048 3664 0.583438 GATCAACCATGTCGATGCCG 59.417 55.000 0.00 0.00 37.07 5.69
1079 3695 1.745890 CACCACCGTCCTCTGAACA 59.254 57.895 0.00 0.00 0.00 3.18
1153 3769 3.370953 GGTGCCACTCATGAAGAAGGTAT 60.371 47.826 0.00 0.00 0.00 2.73
1157 3773 4.701765 CCACTCATGAAGAAGGTATCCAG 58.298 47.826 0.00 0.00 0.00 3.86
1164 3780 3.840666 TGAAGAAGGTATCCAGCTCAACT 59.159 43.478 0.00 0.00 0.00 3.16
1165 3781 4.081420 TGAAGAAGGTATCCAGCTCAACTC 60.081 45.833 0.00 0.00 0.00 3.01
1178 3794 3.006752 AGCTCAACTCTCAACTCTTCTGG 59.993 47.826 0.00 0.00 0.00 3.86
1185 3801 4.241681 CTCTCAACTCTTCTGGCTAACAC 58.758 47.826 0.00 0.00 0.00 3.32
1189 3805 4.074970 CAACTCTTCTGGCTAACACCATT 58.925 43.478 0.00 0.00 39.54 3.16
1213 3833 1.421268 TCCATGGATCGGCTAAGCAAT 59.579 47.619 11.44 0.00 0.00 3.56
1215 3835 3.264193 TCCATGGATCGGCTAAGCAATAT 59.736 43.478 11.44 0.00 0.00 1.28
1217 3837 5.045942 TCCATGGATCGGCTAAGCAATATTA 60.046 40.000 11.44 0.00 0.00 0.98
1220 3840 5.865085 TGGATCGGCTAAGCAATATTAAGT 58.135 37.500 0.00 0.00 0.00 2.24
1221 3841 6.999950 TGGATCGGCTAAGCAATATTAAGTA 58.000 36.000 0.00 0.00 0.00 2.24
1223 3843 7.039293 TGGATCGGCTAAGCAATATTAAGTAGA 60.039 37.037 0.00 0.00 0.00 2.59
1224 3844 7.275999 GGATCGGCTAAGCAATATTAAGTAGAC 59.724 40.741 0.00 0.00 0.00 2.59
1225 3845 7.046292 TCGGCTAAGCAATATTAAGTAGACA 57.954 36.000 0.00 0.00 0.00 3.41
1227 3847 7.013942 TCGGCTAAGCAATATTAAGTAGACAGA 59.986 37.037 0.00 0.00 0.00 3.41
1228 3848 7.815068 CGGCTAAGCAATATTAAGTAGACAGAT 59.185 37.037 0.00 0.00 0.00 2.90
1244 3866 5.021033 GACAGATGTCTTGATCAGGTGAT 57.979 43.478 4.57 0.00 41.65 3.06
1491 4113 3.478724 CTACATCGCCGCGCAGGTA 62.479 63.158 8.75 9.07 43.70 3.08
1494 4116 4.570663 ATCGCCGCGCAGGTACTC 62.571 66.667 8.75 0.00 43.70 2.59
1548 4170 1.061324 TTTACCACCCCGTGAACCCT 61.061 55.000 0.00 0.00 35.23 4.34
1638 4260 5.455056 TCCTTCTCTTCGTCATAATAGCC 57.545 43.478 0.00 0.00 0.00 3.93
1706 4328 5.657474 TGTAGCTGGTATTTCTTCCTTACG 58.343 41.667 0.00 0.00 0.00 3.18
1747 4395 4.017314 TCCCCAAGTAATCCCGGTTTTATT 60.017 41.667 0.00 0.00 0.00 1.40
1748 4396 5.193325 TCCCCAAGTAATCCCGGTTTTATTA 59.807 40.000 0.00 0.00 0.00 0.98
1812 4460 7.148836 GCGACAGTAGTGATGAATATTCTCATG 60.149 40.741 16.24 12.94 36.15 3.07
1841 4755 7.040548 GGGGTAAGTAGCTAGAATGTGTAGTAG 60.041 44.444 0.00 0.00 0.00 2.57
1842 4756 7.718753 GGGTAAGTAGCTAGAATGTGTAGTAGA 59.281 40.741 0.00 0.00 0.00 2.59
1843 4757 9.118300 GGTAAGTAGCTAGAATGTGTAGTAGAA 57.882 37.037 0.00 0.00 0.00 2.10
1851 4765 7.863375 GCTAGAATGTGTAGTAGAAGTACATGG 59.137 40.741 0.00 0.00 36.51 3.66
1974 4888 0.874607 CTATGAACCCAGCGCGTACC 60.875 60.000 8.43 0.00 0.00 3.34
2100 5014 4.227538 AGTTGTAGTCAGAAACATCGACG 58.772 43.478 0.00 0.00 34.80 5.12
2102 5016 4.492791 TGTAGTCAGAAACATCGACGAA 57.507 40.909 0.00 0.00 34.80 3.85
2103 5017 4.862350 TGTAGTCAGAAACATCGACGAAA 58.138 39.130 0.00 0.00 34.80 3.46
2104 5018 5.283294 TGTAGTCAGAAACATCGACGAAAA 58.717 37.500 0.00 0.00 34.80 2.29
2110 5024 6.354622 GTCAGAAACATCGACGAAAAAGAAAG 59.645 38.462 0.00 0.00 0.00 2.62
2111 5025 6.036735 TCAGAAACATCGACGAAAAAGAAAGT 59.963 34.615 0.00 0.00 0.00 2.66
2112 5026 6.687105 CAGAAACATCGACGAAAAAGAAAGTT 59.313 34.615 0.00 0.00 0.00 2.66
2113 5027 7.218204 CAGAAACATCGACGAAAAAGAAAGTTT 59.782 33.333 0.00 3.63 32.72 2.66
2116 5030 8.543071 AACATCGACGAAAAAGAAAGTTTAAG 57.457 30.769 0.00 0.00 0.00 1.85
2117 5031 7.691158 ACATCGACGAAAAAGAAAGTTTAAGT 58.309 30.769 0.00 0.00 0.00 2.24
2118 5032 7.638683 ACATCGACGAAAAAGAAAGTTTAAGTG 59.361 33.333 0.00 0.00 0.00 3.16
2119 5033 5.961263 TCGACGAAAAAGAAAGTTTAAGTGC 59.039 36.000 0.00 0.00 0.00 4.40
2120 5034 5.735427 CGACGAAAAAGAAAGTTTAAGTGCA 59.265 36.000 0.00 0.00 0.00 4.57
2121 5035 6.076092 CGACGAAAAAGAAAGTTTAAGTGCAG 60.076 38.462 0.00 0.00 0.00 4.41
2122 5036 6.848451 ACGAAAAAGAAAGTTTAAGTGCAGA 58.152 32.000 0.00 0.00 0.00 4.26
2123 5037 7.309920 ACGAAAAAGAAAGTTTAAGTGCAGAA 58.690 30.769 0.00 0.00 0.00 3.02
2124 5038 7.484959 ACGAAAAAGAAAGTTTAAGTGCAGAAG 59.515 33.333 0.00 0.00 0.00 2.85
2126 5040 7.404671 AAAAGAAAGTTTAAGTGCAGAAGGA 57.595 32.000 0.00 0.00 0.00 3.36
2152 5080 1.627864 AAAGGCTAATTGGGTGCGTT 58.372 45.000 0.00 0.00 36.55 4.84
2164 5092 1.470805 GGGTGCGTTTTGCTGAAGTTT 60.471 47.619 0.00 0.00 46.63 2.66
2165 5093 2.267426 GGTGCGTTTTGCTGAAGTTTT 58.733 42.857 0.00 0.00 46.63 2.43
2166 5094 2.029124 GGTGCGTTTTGCTGAAGTTTTG 59.971 45.455 0.00 0.00 46.63 2.44
2167 5095 2.920490 GTGCGTTTTGCTGAAGTTTTGA 59.080 40.909 0.00 0.00 46.63 2.69
2179 5107 8.920509 TGCTGAAGTTTTGATTGATTGATATG 57.079 30.769 0.00 0.00 0.00 1.78
2235 5164 7.773489 TCATATTTTGATGAAAACAGGTCCA 57.227 32.000 0.00 0.00 33.86 4.02
2238 5167 6.669125 ATTTTGATGAAAACAGGTCCATGA 57.331 33.333 0.00 0.00 33.86 3.07
2241 5170 4.582869 TGATGAAAACAGGTCCATGAGAG 58.417 43.478 0.00 0.00 0.00 3.20
2248 5177 2.107953 GTCCATGAGAGCGGAGGC 59.892 66.667 0.00 0.00 40.37 4.70
2249 5178 3.157252 TCCATGAGAGCGGAGGCC 61.157 66.667 0.00 0.00 41.24 5.19
2250 5179 3.160047 CCATGAGAGCGGAGGCCT 61.160 66.667 3.86 3.86 41.24 5.19
2251 5180 2.108566 CATGAGAGCGGAGGCCTG 59.891 66.667 12.00 0.00 41.24 4.85
2252 5181 2.364842 ATGAGAGCGGAGGCCTGT 60.365 61.111 12.00 0.00 41.24 4.00
2258 5187 0.179097 GAGCGGAGGCCTGTTTCTAG 60.179 60.000 12.00 0.00 41.24 2.43
2304 5233 0.905809 TTGTCCCGGTGGCTAGCTAA 60.906 55.000 15.72 0.00 0.00 3.09
2321 5250 5.815233 AGCTAACACTATCAGCCATGTAT 57.185 39.130 0.00 0.00 35.88 2.29
2338 5272 5.009010 CCATGTATGGCCTAAATCTGACAAC 59.991 44.000 3.32 0.00 41.75 3.32
2437 5372 7.009540 CAGTTTTGTCTTGGAATTGAACAGTTC 59.990 37.037 6.32 6.32 0.00 3.01
2445 5380 4.341806 TGGAATTGAACAGTTCTGCACATT 59.658 37.500 14.51 5.23 0.00 2.71
2492 5427 2.559698 TCAAATTTCCTCGGCTCACA 57.440 45.000 0.00 0.00 0.00 3.58
2509 5444 4.142600 GCTCACAGGTATTTTGCTAGTTGG 60.143 45.833 0.00 0.00 0.00 3.77
2510 5445 4.331968 TCACAGGTATTTTGCTAGTTGGG 58.668 43.478 0.00 0.00 0.00 4.12
2534 5469 8.311109 GGGTAAAATCTTGGTGTGAATACATTT 58.689 33.333 0.00 0.00 39.39 2.32
2539 5474 6.312399 TCTTGGTGTGAATACATTTGACAC 57.688 37.500 0.00 0.00 39.39 3.67
2555 5490 9.168451 ACATTTGACACGGATAATTACACATAA 57.832 29.630 0.00 0.00 0.00 1.90
2593 5532 3.430042 ACTAGTAGTGTCGGTCTTGGA 57.570 47.619 0.85 0.00 0.00 3.53
2596 5535 2.161030 AGTAGTGTCGGTCTTGGACTC 58.839 52.381 0.00 0.00 35.45 3.36
2632 5571 6.374053 TCAAAATGCTGTTATTCGATCCTTCA 59.626 34.615 0.00 0.00 0.00 3.02
2635 5574 7.426929 AATGCTGTTATTCGATCCTTCATAC 57.573 36.000 0.00 0.00 0.00 2.39
2640 5579 7.815068 GCTGTTATTCGATCCTTCATACTATGT 59.185 37.037 0.00 0.00 0.00 2.29
2645 5584 8.830915 ATTCGATCCTTCATACTATGTCCTAT 57.169 34.615 0.00 0.00 0.00 2.57
2648 5587 7.670140 TCGATCCTTCATACTATGTCCTATTGT 59.330 37.037 0.00 0.00 0.00 2.71
2657 5596 6.723298 ACTATGTCCTATTGTCTCAGGAAG 57.277 41.667 0.00 0.00 42.55 3.46
2658 5597 5.600484 ACTATGTCCTATTGTCTCAGGAAGG 59.400 44.000 0.00 0.00 42.55 3.46
2723 5662 3.750501 TTGGAAAGAAGGATAACCCCC 57.249 47.619 0.00 0.00 36.73 5.40
2726 5665 0.257905 AAAGAAGGATAACCCCCGGC 59.742 55.000 0.00 0.00 36.73 6.13
2729 5668 2.053259 GAAGGATAACCCCCGGCCTC 62.053 65.000 0.00 0.00 36.73 4.70
2755 5694 1.335810 CAAGCGATGCACATAGCCATT 59.664 47.619 11.44 0.00 44.83 3.16
2764 5703 7.967854 GCGATGCACATAGCCATTTTTATTATA 59.032 33.333 4.57 0.00 44.83 0.98
2805 5744 3.249119 GGCTTCCCCTCCTAGTCAT 57.751 57.895 0.00 0.00 0.00 3.06
2820 5759 5.423290 TCCTAGTCATGTGACAACATCATCT 59.577 40.000 14.92 0.00 45.50 2.90
2849 5788 3.306641 GGATAGTGGCATAGGCTCTTGAG 60.307 52.174 0.00 0.00 40.87 3.02
2907 5846 1.594862 CTGCCGCTTTAGATGCAGTAC 59.405 52.381 10.84 0.00 44.69 2.73
2958 5897 5.323371 TGCATACAAAATAGCCTGTTTCC 57.677 39.130 0.00 0.00 0.00 3.13
2968 5907 3.644966 AGCCTGTTTCCGGAATTCATA 57.355 42.857 19.62 0.00 0.00 2.15
3034 5973 3.686726 ACGCTCAGAATCACCAAAGAATC 59.313 43.478 0.00 0.00 0.00 2.52
3061 6000 7.607991 ACACACTTTGAGGAGGAAAATATACAG 59.392 37.037 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.609555 GCGAGGAGATTACATCCGAGT 59.390 52.381 0.00 0.00 42.02 4.18
1 2 1.609072 TGCGAGGAGATTACATCCGAG 59.391 52.381 0.00 0.00 42.02 4.63
2 3 1.687563 TGCGAGGAGATTACATCCGA 58.312 50.000 0.00 0.00 42.02 4.55
3 4 2.509052 TTGCGAGGAGATTACATCCG 57.491 50.000 0.00 0.00 42.02 4.18
22 23 6.475402 GTGATCACATCCGTGTTTTTCTTTTT 59.525 34.615 21.07 0.00 44.02 1.94
23 24 5.977129 GTGATCACATCCGTGTTTTTCTTTT 59.023 36.000 21.07 0.00 44.02 2.27
24 25 5.299279 AGTGATCACATCCGTGTTTTTCTTT 59.701 36.000 27.02 0.00 44.02 2.52
25 26 4.821805 AGTGATCACATCCGTGTTTTTCTT 59.178 37.500 27.02 0.00 44.02 2.52
26 27 4.389374 AGTGATCACATCCGTGTTTTTCT 58.611 39.130 27.02 0.00 44.02 2.52
27 28 4.749245 AGTGATCACATCCGTGTTTTTC 57.251 40.909 27.02 0.00 44.02 2.29
28 29 5.705441 ACATAGTGATCACATCCGTGTTTTT 59.295 36.000 27.02 4.93 44.02 1.94
29 30 5.245531 ACATAGTGATCACATCCGTGTTTT 58.754 37.500 27.02 5.45 44.02 2.43
30 31 4.832248 ACATAGTGATCACATCCGTGTTT 58.168 39.130 27.02 6.18 44.02 2.83
31 32 4.160439 AGACATAGTGATCACATCCGTGTT 59.840 41.667 27.02 6.90 44.02 3.32
32 33 3.701542 AGACATAGTGATCACATCCGTGT 59.298 43.478 27.02 20.69 44.02 4.49
33 34 4.047142 CAGACATAGTGATCACATCCGTG 58.953 47.826 27.02 18.07 45.08 4.94
34 35 3.954258 TCAGACATAGTGATCACATCCGT 59.046 43.478 27.02 17.33 0.00 4.69
35 36 4.574599 TCAGACATAGTGATCACATCCG 57.425 45.455 27.02 14.43 0.00 4.18
36 37 6.519382 TGAATCAGACATAGTGATCACATCC 58.481 40.000 27.02 11.25 33.34 3.51
37 38 7.871463 TCATGAATCAGACATAGTGATCACATC 59.129 37.037 27.02 17.42 33.34 3.06
38 39 7.732996 TCATGAATCAGACATAGTGATCACAT 58.267 34.615 27.02 15.24 33.34 3.21
39 40 7.116075 TCATGAATCAGACATAGTGATCACA 57.884 36.000 27.02 13.67 33.34 3.58
40 41 8.429493 TTTCATGAATCAGACATAGTGATCAC 57.571 34.615 18.47 18.47 33.34 3.06
41 42 8.262933 ACTTTCATGAATCAGACATAGTGATCA 58.737 33.333 9.40 0.00 33.34 2.92
42 43 8.659925 ACTTTCATGAATCAGACATAGTGATC 57.340 34.615 9.40 0.00 33.34 2.92
43 44 9.107177 GAACTTTCATGAATCAGACATAGTGAT 57.893 33.333 9.40 0.00 36.14 3.06
44 45 7.550551 GGAACTTTCATGAATCAGACATAGTGA 59.449 37.037 9.40 0.00 0.00 3.41
45 46 7.551974 AGGAACTTTCATGAATCAGACATAGTG 59.448 37.037 9.40 0.00 27.25 2.74
46 47 7.628234 AGGAACTTTCATGAATCAGACATAGT 58.372 34.615 9.40 4.17 27.25 2.12
82 83 8.957466 GGCCAGAAGTAAGTACATAATTTCTTT 58.043 33.333 0.00 0.00 0.00 2.52
83 84 7.556635 GGGCCAGAAGTAAGTACATAATTTCTT 59.443 37.037 4.39 0.00 0.00 2.52
84 85 7.054751 GGGCCAGAAGTAAGTACATAATTTCT 58.945 38.462 4.39 0.00 0.00 2.52
85 86 6.826741 TGGGCCAGAAGTAAGTACATAATTTC 59.173 38.462 0.00 0.00 0.00 2.17
86 87 6.727394 TGGGCCAGAAGTAAGTACATAATTT 58.273 36.000 0.00 0.00 0.00 1.82
87 88 6.321821 TGGGCCAGAAGTAAGTACATAATT 57.678 37.500 0.00 0.00 0.00 1.40
88 89 5.968676 TGGGCCAGAAGTAAGTACATAAT 57.031 39.130 0.00 0.00 0.00 1.28
89 90 5.486063 TCTTGGGCCAGAAGTAAGTACATAA 59.514 40.000 6.23 0.00 0.00 1.90
90 91 5.027460 TCTTGGGCCAGAAGTAAGTACATA 58.973 41.667 6.23 0.00 0.00 2.29
91 92 3.844211 TCTTGGGCCAGAAGTAAGTACAT 59.156 43.478 6.23 0.00 0.00 2.29
92 93 3.244582 TCTTGGGCCAGAAGTAAGTACA 58.755 45.455 6.23 0.00 0.00 2.90
93 94 3.975168 TCTTGGGCCAGAAGTAAGTAC 57.025 47.619 6.23 0.00 0.00 2.73
94 95 4.101114 TGATCTTGGGCCAGAAGTAAGTA 58.899 43.478 6.23 0.00 0.00 2.24
95 96 2.912956 TGATCTTGGGCCAGAAGTAAGT 59.087 45.455 6.23 0.00 0.00 2.24
96 97 3.634397 TGATCTTGGGCCAGAAGTAAG 57.366 47.619 6.23 0.00 0.00 2.34
97 98 4.272489 CATTGATCTTGGGCCAGAAGTAA 58.728 43.478 6.23 1.52 0.00 2.24
98 99 3.371917 CCATTGATCTTGGGCCAGAAGTA 60.372 47.826 6.23 0.00 0.00 2.24
99 100 2.622452 CCATTGATCTTGGGCCAGAAGT 60.622 50.000 6.23 0.00 0.00 3.01
100 101 2.029623 CCATTGATCTTGGGCCAGAAG 58.970 52.381 6.23 6.21 0.00 2.85
108 109 6.324512 TGGGAAACATATTCCATTGATCTTGG 59.675 38.462 9.27 8.50 40.32 3.61
150 151 7.624344 GCTGATACGAACAAGAAAATACAAGCT 60.624 37.037 0.00 0.00 0.00 3.74
156 157 7.866729 TGTTTGCTGATACGAACAAGAAAATA 58.133 30.769 0.00 0.00 40.24 1.40
201 202 6.639279 GCTCTTCGTCAACTCCTATTCTAATC 59.361 42.308 0.00 0.00 0.00 1.75
258 259 4.654724 AGGGAGTAGAAGTTAATAGCCACC 59.345 45.833 0.00 0.00 0.00 4.61
259 260 5.221481 GGAGGGAGTAGAAGTTAATAGCCAC 60.221 48.000 0.00 0.00 0.00 5.01
265 266 4.405036 GGAACGGAGGGAGTAGAAGTTAAT 59.595 45.833 0.00 0.00 0.00 1.40
266 267 3.766051 GGAACGGAGGGAGTAGAAGTTAA 59.234 47.826 0.00 0.00 0.00 2.01
267 268 3.011032 AGGAACGGAGGGAGTAGAAGTTA 59.989 47.826 0.00 0.00 0.00 2.24
268 269 2.177734 GGAACGGAGGGAGTAGAAGTT 58.822 52.381 0.00 0.00 0.00 2.66
269 270 1.358445 AGGAACGGAGGGAGTAGAAGT 59.642 52.381 0.00 0.00 0.00 3.01
270 271 2.146920 AGGAACGGAGGGAGTAGAAG 57.853 55.000 0.00 0.00 0.00 2.85
271 272 3.744940 TTAGGAACGGAGGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
272 273 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59
273 274 5.139001 AGTATTTAGGAACGGAGGGAGTAG 58.861 45.833 0.00 0.00 0.00 2.57
274 275 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
275 276 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
276 277 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
277 278 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
278 279 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
279 280 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
280 281 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
281 282 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
282 283 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
298 299 8.064814 GTCACTTGTTGAAATGTCTAGAAAGAC 58.935 37.037 0.00 0.00 43.53 3.01
299 300 7.987458 AGTCACTTGTTGAAATGTCTAGAAAGA 59.013 33.333 0.00 0.00 35.39 2.52
300 301 8.147642 AGTCACTTGTTGAAATGTCTAGAAAG 57.852 34.615 0.00 0.00 35.39 2.62
301 302 9.042008 GTAGTCACTTGTTGAAATGTCTAGAAA 57.958 33.333 0.00 0.00 35.39 2.52
302 303 8.201464 TGTAGTCACTTGTTGAAATGTCTAGAA 58.799 33.333 0.00 0.00 35.39 2.10
303 304 7.722363 TGTAGTCACTTGTTGAAATGTCTAGA 58.278 34.615 0.00 0.00 35.39 2.43
304 305 7.946655 TGTAGTCACTTGTTGAAATGTCTAG 57.053 36.000 0.00 0.00 35.39 2.43
305 306 9.419297 GTATGTAGTCACTTGTTGAAATGTCTA 57.581 33.333 0.00 0.00 35.39 2.59
306 307 7.116376 CGTATGTAGTCACTTGTTGAAATGTCT 59.884 37.037 0.00 0.00 35.39 3.41
307 308 7.227461 CGTATGTAGTCACTTGTTGAAATGTC 58.773 38.462 0.00 0.00 35.39 3.06
308 309 6.147164 CCGTATGTAGTCACTTGTTGAAATGT 59.853 38.462 0.00 0.00 35.39 2.71
309 310 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
310 311 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
311 312 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
312 313 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
313 314 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
314 315 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
315 316 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
316 317 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
317 318 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
318 319 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
319 320 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
320 321 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
321 322 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
322 323 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
323 324 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
324 325 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
325 326 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
326 327 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
327 328 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
328 329 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
329 330 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
330 331 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
331 332 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
332 333 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
333 334 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
403 404 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
404 405 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
405 406 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
406 407 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
407 408 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
408 409 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
409 410 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
410 411 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
411 412 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
412 413 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
413 414 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
414 415 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
415 416 8.912614 ATATACTCCCTCCGTTCCTAAATATT 57.087 34.615 0.00 0.00 0.00 1.28
416 417 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
418 419 8.912614 ATAATATACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
419 420 9.471702 CTATAATATACTCCCTCCGTTCCTAAA 57.528 37.037 0.00 0.00 0.00 1.85
420 421 8.618385 ACTATAATATACTCCCTCCGTTCCTAA 58.382 37.037 0.00 0.00 0.00 2.69
421 422 8.167691 ACTATAATATACTCCCTCCGTTCCTA 57.832 38.462 0.00 0.00 0.00 2.94
422 423 7.042106 ACTATAATATACTCCCTCCGTTCCT 57.958 40.000 0.00 0.00 0.00 3.36
423 424 7.715266 AACTATAATATACTCCCTCCGTTCC 57.285 40.000 0.00 0.00 0.00 3.62
424 425 9.636879 GAAAACTATAATATACTCCCTCCGTTC 57.363 37.037 0.00 0.00 0.00 3.95
425 426 9.151177 TGAAAACTATAATATACTCCCTCCGTT 57.849 33.333 0.00 0.00 0.00 4.44
426 427 8.716674 TGAAAACTATAATATACTCCCTCCGT 57.283 34.615 0.00 0.00 0.00 4.69
427 428 9.991906 TTTGAAAACTATAATATACTCCCTCCG 57.008 33.333 0.00 0.00 0.00 4.63
474 475 7.068593 TCTGGAATCATAAGCCACAAAATTAGG 59.931 37.037 0.00 0.00 0.00 2.69
484 485 4.098349 GCAACATTCTGGAATCATAAGCCA 59.902 41.667 0.00 0.00 0.00 4.75
497 498 1.467734 GCTGTCCAGAGCAACATTCTG 59.532 52.381 0.00 0.00 41.34 3.02
498 499 1.072806 TGCTGTCCAGAGCAACATTCT 59.927 47.619 0.00 0.00 46.05 2.40
499 500 1.527034 TGCTGTCCAGAGCAACATTC 58.473 50.000 0.00 0.00 46.05 2.67
500 501 3.731716 TGCTGTCCAGAGCAACATT 57.268 47.368 0.00 0.00 46.05 2.71
506 507 5.788450 ACTATATATGTTGCTGTCCAGAGC 58.212 41.667 0.00 0.00 39.62 4.09
507 508 9.197694 GTAAACTATATATGTTGCTGTCCAGAG 57.802 37.037 0.00 0.00 0.00 3.35
508 509 8.924303 AGTAAACTATATATGTTGCTGTCCAGA 58.076 33.333 0.00 0.00 0.00 3.86
524 525 7.415989 GCCGTGGCTAGCATATAGTAAACTATA 60.416 40.741 18.24 11.29 40.25 1.31
525 526 6.627508 GCCGTGGCTAGCATATAGTAAACTAT 60.628 42.308 18.24 7.72 39.10 2.12
526 527 5.336213 GCCGTGGCTAGCATATAGTAAACTA 60.336 44.000 18.24 0.00 38.26 2.24
527 528 4.560919 GCCGTGGCTAGCATATAGTAAACT 60.561 45.833 18.24 0.00 38.26 2.66
528 529 3.678548 GCCGTGGCTAGCATATAGTAAAC 59.321 47.826 18.24 0.00 38.26 2.01
529 530 3.613193 CGCCGTGGCTAGCATATAGTAAA 60.613 47.826 18.24 0.00 39.32 2.01
530 531 2.094906 CGCCGTGGCTAGCATATAGTAA 60.095 50.000 18.24 0.00 39.32 2.24
531 532 1.471287 CGCCGTGGCTAGCATATAGTA 59.529 52.381 18.24 0.00 39.32 1.82
532 533 0.243907 CGCCGTGGCTAGCATATAGT 59.756 55.000 18.24 0.00 39.32 2.12
533 534 0.458543 CCGCCGTGGCTAGCATATAG 60.459 60.000 18.24 1.76 39.32 1.31
534 535 1.589630 CCGCCGTGGCTAGCATATA 59.410 57.895 18.24 0.00 39.32 0.86
535 536 2.343758 CCGCCGTGGCTAGCATAT 59.656 61.111 18.24 0.00 39.32 1.78
549 550 0.749454 ATTGTCATCAGGAAGGCCGC 60.749 55.000 0.00 0.00 39.96 6.53
565 566 5.294060 CCACAAAGTCTTGAAACCCAAATTG 59.706 40.000 0.00 0.00 36.33 2.32
571 572 2.623416 CCTCCACAAAGTCTTGAAACCC 59.377 50.000 0.00 0.00 36.33 4.11
577 578 1.915141 ATGGCCTCCACAAAGTCTTG 58.085 50.000 3.32 0.00 35.80 3.02
631 3242 7.613801 AGGCAAAGTGTAATTGGTATCAACATA 59.386 33.333 0.00 0.00 35.48 2.29
667 3278 7.448161 TGTCTTGATTTGGTCTTGATATTGTGT 59.552 33.333 0.00 0.00 0.00 3.72
668 3279 7.819644 TGTCTTGATTTGGTCTTGATATTGTG 58.180 34.615 0.00 0.00 0.00 3.33
669 3280 8.585471 ATGTCTTGATTTGGTCTTGATATTGT 57.415 30.769 0.00 0.00 0.00 2.71
670 3281 7.854422 CGATGTCTTGATTTGGTCTTGATATTG 59.146 37.037 0.00 0.00 0.00 1.90
672 3283 7.275183 TCGATGTCTTGATTTGGTCTTGATAT 58.725 34.615 0.00 0.00 0.00 1.63
673 3284 6.639563 TCGATGTCTTGATTTGGTCTTGATA 58.360 36.000 0.00 0.00 0.00 2.15
676 3289 4.931601 TCTCGATGTCTTGATTTGGTCTTG 59.068 41.667 0.00 0.00 0.00 3.02
730 3343 6.380095 TTGCGTGTCATTAGGTTTTAAGTT 57.620 33.333 0.00 0.00 0.00 2.66
736 3349 4.911514 AACTTTGCGTGTCATTAGGTTT 57.088 36.364 0.00 0.00 0.00 3.27
792 3405 0.606401 ATGAGTGCAGGGTTTGACGG 60.606 55.000 0.00 0.00 0.00 4.79
825 3438 0.818938 TATGCATGCCAACTTGCCAG 59.181 50.000 16.68 0.00 44.26 4.85
826 3439 1.487300 ATATGCATGCCAACTTGCCA 58.513 45.000 16.68 0.00 44.26 4.92
827 3440 2.607631 AATATGCATGCCAACTTGCC 57.392 45.000 16.68 0.00 44.26 4.52
828 3441 7.385752 ACATATTAAATATGCATGCCAACTTGC 59.614 33.333 16.68 0.00 45.05 4.01
829 3442 8.821147 ACATATTAAATATGCATGCCAACTTG 57.179 30.769 16.68 2.70 45.05 3.16
830 3443 9.263538 CAACATATTAAATATGCATGCCAACTT 57.736 29.630 16.68 6.34 45.05 2.66
831 3444 8.640651 TCAACATATTAAATATGCATGCCAACT 58.359 29.630 16.68 0.00 45.05 3.16
832 3445 8.702438 GTCAACATATTAAATATGCATGCCAAC 58.298 33.333 16.68 0.00 45.05 3.77
879 3492 2.989840 GCTAGCTAAGGCATACACGATG 59.010 50.000 7.70 0.00 41.70 3.84
952 3565 7.992608 ACCAAGACAACAGTATGCATATAATGA 59.007 33.333 10.16 0.00 42.53 2.57
971 3584 5.875359 AGCAAGCACTATAGTTTACCAAGAC 59.125 40.000 1.56 0.00 0.00 3.01
978 3591 6.404623 CCATTGCAAGCAAGCACTATAGTTTA 60.405 38.462 13.35 0.00 45.61 2.01
1048 3664 4.077184 TGGTGGTGGATCGCCGTC 62.077 66.667 1.30 0.00 40.02 4.79
1079 3695 0.811915 CCGAGGACGAGTTGAGTCAT 59.188 55.000 0.00 0.00 42.66 3.06
1106 3722 3.582208 TGCCATGTTTGGAAATTTAGGCT 59.418 39.130 0.00 0.00 46.92 4.58
1141 3757 4.472833 AGTTGAGCTGGATACCTTCTTCAT 59.527 41.667 0.00 0.00 0.00 2.57
1153 3769 2.603021 AGAGTTGAGAGTTGAGCTGGA 58.397 47.619 0.00 0.00 0.00 3.86
1157 3773 3.324993 CCAGAAGAGTTGAGAGTTGAGC 58.675 50.000 0.00 0.00 0.00 4.26
1164 3780 3.006967 GGTGTTAGCCAGAAGAGTTGAGA 59.993 47.826 0.00 0.00 0.00 3.27
1165 3781 3.244215 TGGTGTTAGCCAGAAGAGTTGAG 60.244 47.826 0.00 0.00 33.97 3.02
1178 3794 6.568462 CGATCCATGGAATTAATGGTGTTAGC 60.568 42.308 20.67 0.00 44.27 3.09
1185 3801 3.424703 AGCCGATCCATGGAATTAATGG 58.575 45.455 20.67 14.59 45.13 3.16
1189 3805 3.072330 TGCTTAGCCGATCCATGGAATTA 59.928 43.478 20.67 4.35 0.00 1.40
1220 3840 6.183360 CATCACCTGATCAAGACATCTGTCTA 60.183 42.308 12.96 0.00 42.67 2.59
1221 3841 5.395435 CATCACCTGATCAAGACATCTGTCT 60.395 44.000 7.03 7.03 44.10 3.41
1223 3843 4.383880 CCATCACCTGATCAAGACATCTGT 60.384 45.833 0.00 0.00 31.21 3.41
1224 3844 4.127907 CCATCACCTGATCAAGACATCTG 58.872 47.826 0.00 0.00 31.21 2.90
1225 3845 3.433314 GCCATCACCTGATCAAGACATCT 60.433 47.826 0.00 0.00 31.21 2.90
1227 3847 2.744166 CGCCATCACCTGATCAAGACAT 60.744 50.000 0.00 0.00 31.21 3.06
1228 3848 1.405933 CGCCATCACCTGATCAAGACA 60.406 52.381 0.00 0.00 31.21 3.41
1231 3851 0.178767 TCCGCCATCACCTGATCAAG 59.821 55.000 0.00 0.00 31.21 3.02
1244 3866 2.528127 TCCCCAGAAACTCCGCCA 60.528 61.111 0.00 0.00 0.00 5.69
1353 3975 1.078497 CACCATGACCGCTAAGCCA 60.078 57.895 0.00 0.00 0.00 4.75
1681 4303 6.255887 CGTAAGGAAGAAATACCAGCTACAAG 59.744 42.308 0.00 0.00 0.00 3.16
1682 4304 6.103997 CGTAAGGAAGAAATACCAGCTACAA 58.896 40.000 0.00 0.00 0.00 2.41
1683 4305 5.186409 ACGTAAGGAAGAAATACCAGCTACA 59.814 40.000 0.00 0.00 46.39 2.74
1684 4306 5.658468 ACGTAAGGAAGAAATACCAGCTAC 58.342 41.667 0.00 0.00 46.39 3.58
1685 4307 5.927281 ACGTAAGGAAGAAATACCAGCTA 57.073 39.130 0.00 0.00 46.39 3.32
1686 4308 4.820894 ACGTAAGGAAGAAATACCAGCT 57.179 40.909 0.00 0.00 46.39 4.24
1687 4309 5.176592 AGAACGTAAGGAAGAAATACCAGC 58.823 41.667 0.00 0.00 46.39 4.85
1718 4340 2.025699 CGGGATTACTTGGGGAGGAAAA 60.026 50.000 0.00 0.00 30.19 2.29
1726 4348 8.873186 ATATAATAAAACCGGGATTACTTGGG 57.127 34.615 6.32 0.00 0.00 4.12
1812 4460 1.406903 TTCTAGCTACTTACCCCGCC 58.593 55.000 0.00 0.00 0.00 6.13
1841 4755 7.940850 ACCACAATAATAATGCCATGTACTTC 58.059 34.615 0.00 0.00 0.00 3.01
1842 4756 7.896383 ACCACAATAATAATGCCATGTACTT 57.104 32.000 0.00 0.00 0.00 2.24
1843 4757 7.559533 TGAACCACAATAATAATGCCATGTACT 59.440 33.333 0.00 0.00 0.00 2.73
1844 4758 7.711846 TGAACCACAATAATAATGCCATGTAC 58.288 34.615 0.00 0.00 0.00 2.90
2100 5014 7.973944 TCCTTCTGCACTTAAACTTTCTTTTTC 59.026 33.333 0.00 0.00 0.00 2.29
2102 5016 7.404671 TCCTTCTGCACTTAAACTTTCTTTT 57.595 32.000 0.00 0.00 0.00 2.27
2103 5017 7.404671 TTCCTTCTGCACTTAAACTTTCTTT 57.595 32.000 0.00 0.00 0.00 2.52
2104 5018 7.404671 TTTCCTTCTGCACTTAAACTTTCTT 57.595 32.000 0.00 0.00 0.00 2.52
2133 5061 1.627864 AACGCACCCAATTAGCCTTT 58.372 45.000 0.00 0.00 0.00 3.11
2136 5064 1.708822 CAAAACGCACCCAATTAGCC 58.291 50.000 0.00 0.00 0.00 3.93
2137 5065 1.067693 GCAAAACGCACCCAATTAGC 58.932 50.000 0.00 0.00 41.79 3.09
2138 5066 2.030363 TCAGCAAAACGCACCCAATTAG 60.030 45.455 0.00 0.00 46.13 1.73
2139 5067 1.957177 TCAGCAAAACGCACCCAATTA 59.043 42.857 0.00 0.00 46.13 1.40
2140 5068 0.749649 TCAGCAAAACGCACCCAATT 59.250 45.000 0.00 0.00 46.13 2.32
2144 5072 0.102300 AACTTCAGCAAAACGCACCC 59.898 50.000 0.00 0.00 46.13 4.61
2152 5080 9.932207 ATATCAATCAATCAAAACTTCAGCAAA 57.068 25.926 0.00 0.00 0.00 3.68
2235 5164 1.557269 AAACAGGCCTCCGCTCTCAT 61.557 55.000 0.00 0.00 34.44 2.90
2238 5167 0.614979 TAGAAACAGGCCTCCGCTCT 60.615 55.000 0.00 5.29 34.44 4.09
2241 5170 0.036294 AACTAGAAACAGGCCTCCGC 60.036 55.000 0.00 0.00 0.00 5.54
2245 5174 6.374417 TCTATTGAAACTAGAAACAGGCCT 57.626 37.500 0.00 0.00 0.00 5.19
2246 5175 7.631717 ATTCTATTGAAACTAGAAACAGGCC 57.368 36.000 0.00 0.00 38.38 5.19
2281 5210 1.810412 GCTAGCCACCGGGACAATTAG 60.810 57.143 6.32 0.99 35.59 1.73
2283 5212 1.077716 GCTAGCCACCGGGACAATT 60.078 57.895 6.32 0.00 35.59 2.32
2285 5214 0.905809 TTAGCTAGCCACCGGGACAA 60.906 55.000 12.13 0.00 35.59 3.18
2289 5218 1.153429 GTGTTAGCTAGCCACCGGG 60.153 63.158 12.13 0.00 37.18 5.73
2321 5250 2.642311 TCCAGTTGTCAGATTTAGGCCA 59.358 45.455 5.01 0.00 0.00 5.36
2325 5259 8.553459 ACTTTGTATCCAGTTGTCAGATTTAG 57.447 34.615 0.00 0.00 0.00 1.85
2364 5298 8.585471 ATGAGACTGAAATTGGTATTCACAAT 57.415 30.769 0.00 0.00 40.07 2.71
2369 5303 7.974675 TCGAAATGAGACTGAAATTGGTATTC 58.025 34.615 0.00 0.00 0.00 1.75
2385 5319 9.546909 GTACAAAATGCCATATATCGAAATGAG 57.453 33.333 7.20 0.80 0.00 2.90
2437 5372 2.370281 ACTCGGTCACTAATGTGCAG 57.630 50.000 0.00 0.00 43.49 4.41
2445 5380 3.823281 TCCAAAACAACTCGGTCACTA 57.177 42.857 0.00 0.00 0.00 2.74
2452 5387 7.979115 TTGAAATAACTTCCAAAACAACTCG 57.021 32.000 0.00 0.00 32.53 4.18
2492 5427 7.893833 AGATTTTACCCAACTAGCAAAATACCT 59.106 33.333 0.00 0.00 30.96 3.08
2509 5444 9.139174 CAAATGTATTCACACCAAGATTTTACC 57.861 33.333 0.00 0.00 37.54 2.85
2510 5445 9.906660 TCAAATGTATTCACACCAAGATTTTAC 57.093 29.630 0.00 0.00 37.54 2.01
2534 5469 6.759356 CCACTTATGTGTAATTATCCGTGTCA 59.241 38.462 7.86 0.00 42.34 3.58
2539 5474 9.100554 TGTTAACCACTTATGTGTAATTATCCG 57.899 33.333 2.48 0.00 42.34 4.18
2566 5501 7.601508 CCAAGACCGACACTACTAGTTTATTTT 59.398 37.037 0.00 0.00 0.00 1.82
2568 5503 6.435277 TCCAAGACCGACACTACTAGTTTATT 59.565 38.462 0.00 0.00 0.00 1.40
2574 5509 3.345414 AGTCCAAGACCGACACTACTAG 58.655 50.000 0.00 0.00 32.18 2.57
2584 5523 1.546961 ACTACTGGAGTCCAAGACCG 58.453 55.000 14.17 3.40 29.95 4.79
2593 5532 4.530161 AGCATTTTGAGAGACTACTGGAGT 59.470 41.667 0.00 0.00 42.90 3.85
2596 5535 4.573900 ACAGCATTTTGAGAGACTACTGG 58.426 43.478 0.00 0.00 0.00 4.00
2605 5544 6.115446 AGGATCGAATAACAGCATTTTGAGA 58.885 36.000 0.00 0.00 0.00 3.27
2632 5571 7.453126 CCTTCCTGAGACAATAGGACATAGTAT 59.547 40.741 0.00 0.00 42.55 2.12
2635 5574 5.835819 TCCTTCCTGAGACAATAGGACATAG 59.164 44.000 0.00 0.00 42.55 2.23
2640 5579 6.642733 AATTTCCTTCCTGAGACAATAGGA 57.357 37.500 0.00 0.00 41.20 2.94
2645 5584 6.790232 AAACAAATTTCCTTCCTGAGACAA 57.210 33.333 0.00 0.00 0.00 3.18
2648 5587 8.704849 TCAATAAACAAATTTCCTTCCTGAGA 57.295 30.769 0.00 0.00 0.00 3.27
2704 5643 1.562475 CGGGGGTTATCCTTCTTTCCA 59.438 52.381 0.00 0.00 35.33 3.53
2706 5645 1.749635 GCCGGGGGTTATCCTTCTTTC 60.750 57.143 2.18 0.00 35.33 2.62
2711 5650 2.043941 AGGCCGGGGGTTATCCTT 59.956 61.111 2.18 0.00 35.33 3.36
2723 5662 3.570638 CGCTTGATGCAGAGGCCG 61.571 66.667 0.00 0.00 43.06 6.13
2764 5703 5.300752 CCTTGGAGATTACACGAGCATAAT 58.699 41.667 0.00 0.00 0.00 1.28
2774 5713 1.564348 GGGAAGCCCTTGGAGATTACA 59.436 52.381 0.00 0.00 41.34 2.41
2805 5744 4.080919 CCCCTTAGAGATGATGTTGTCACA 60.081 45.833 0.00 0.00 40.28 3.58
2820 5759 3.791320 CCTATGCCACTATCCCCTTAGA 58.209 50.000 0.00 0.00 0.00 2.10
2849 5788 1.198713 TGTGAAGGAGAGGAGGCATC 58.801 55.000 0.00 0.00 0.00 3.91
2907 5846 5.118990 TGAACTCTCTTTCTTGTTGACAGG 58.881 41.667 0.00 0.00 0.00 4.00
2958 5897 6.908825 TGAAACACCTCTTTTATGAATTCCG 58.091 36.000 2.27 0.00 0.00 4.30
2992 5931 5.240623 AGCGTTGACATCAGGTTTTCATTTA 59.759 36.000 0.00 0.00 0.00 1.40
3034 5973 6.824305 ATATTTTCCTCCTCAAAGTGTGTG 57.176 37.500 0.00 0.00 0.00 3.82
3061 6000 5.963586 CGGTTACTGTCTTGTTGTTCTTTTC 59.036 40.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.