Multiple sequence alignment - TraesCS5A01G524800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G524800 chr5A 100.000 4323 0 0 1 4323 685533162 685537484 0.000000e+00 7984.0
1 TraesCS5A01G524800 chr5A 98.485 66 1 0 1 66 685442581 685442646 2.730000e-22 117.0
2 TraesCS5A01G524800 chr5A 95.588 68 2 1 1 67 577868606 577868673 1.640000e-19 108.0
3 TraesCS5A01G524800 chr5A 95.588 68 2 1 1 67 587332444 587332511 1.640000e-19 108.0
4 TraesCS5A01G524800 chr4D 91.744 1514 80 27 2604 4096 502409876 502411365 0.000000e+00 2061.0
5 TraesCS5A01G524800 chr4D 86.962 1741 119 38 813 2517 502408203 502409871 0.000000e+00 1858.0
6 TraesCS5A01G524800 chr4D 91.556 225 14 5 4096 4317 502411393 502411615 5.430000e-79 305.0
7 TraesCS5A01G524800 chr4D 83.505 194 14 11 1404 1585 348430478 348430291 9.620000e-37 165.0
8 TraesCS5A01G524800 chr4D 83.158 190 17 8 1396 1585 234423926 234423752 4.470000e-35 159.0
9 TraesCS5A01G524800 chr4D 92.208 77 6 0 1592 1668 234423693 234423617 4.570000e-20 110.0
10 TraesCS5A01G524800 chr4D 85.938 64 8 1 1511 1573 234423605 234423542 2.790000e-07 67.6
11 TraesCS5A01G524800 chr4D 100.000 35 0 0 150 184 502403768 502403802 1.000000e-06 65.8
12 TraesCS5A01G524800 chr4D 91.111 45 2 2 728 770 502408091 502408135 4.670000e-05 60.2
13 TraesCS5A01G524800 chr4B 84.028 1703 160 53 881 2517 646655102 646656758 0.000000e+00 1535.0
14 TraesCS5A01G524800 chr4B 86.501 726 62 22 1011 1706 646572513 646573232 0.000000e+00 765.0
15 TraesCS5A01G524800 chr4B 83.712 749 67 35 2604 3326 646656763 646657482 0.000000e+00 656.0
16 TraesCS5A01G524800 chr4B 89.306 533 39 9 150 680 646651098 646651614 0.000000e+00 652.0
17 TraesCS5A01G524800 chr4B 80.361 499 58 22 1324 1810 50244366 50244836 4.140000e-90 342.0
18 TraesCS5A01G524800 chr4B 92.105 228 17 1 4096 4323 646658259 646658485 1.940000e-83 320.0
19 TraesCS5A01G524800 chr4B 85.238 210 28 3 4114 4323 50252050 50251844 3.390000e-51 213.0
20 TraesCS5A01G524800 chr4B 81.250 272 31 14 3080 3340 50251108 50251370 7.330000e-48 202.0
21 TraesCS5A01G524800 chr4B 94.737 114 5 1 767 879 646654839 646654952 4.440000e-40 176.0
22 TraesCS5A01G524800 chr4B 80.631 222 38 3 2655 2874 50245477 50245695 2.670000e-37 167.0
23 TraesCS5A01G524800 chr3D 83.002 453 54 15 2906 3340 93832251 93831804 5.240000e-104 388.0
24 TraesCS5A01G524800 chr3B 82.301 452 59 14 2906 3340 144080676 144080229 5.280000e-99 372.0
25 TraesCS5A01G524800 chr3B 79.074 540 58 30 1294 1814 144081436 144080933 1.940000e-83 320.0
26 TraesCS5A01G524800 chr7D 82.990 194 15 12 1404 1585 232372628 232372441 4.470000e-35 159.0
27 TraesCS5A01G524800 chr7D 97.059 68 1 1 1 67 557909832 557909765 3.530000e-21 113.0
28 TraesCS5A01G524800 chr7D 88.298 94 7 2 1592 1681 232372382 232372289 4.570000e-20 110.0
29 TraesCS5A01G524800 chr7D 93.939 66 3 1 1 65 557915753 557915688 9.890000e-17 99.0
30 TraesCS5A01G524800 chr1D 82.990 194 15 12 1404 1585 16732946 16733133 4.470000e-35 159.0
31 TraesCS5A01G524800 chr1D 97.015 67 1 1 1 66 54900527 54900593 1.270000e-20 111.0
32 TraesCS5A01G524800 chr6A 100.000 66 0 0 1 66 71486695 71486630 5.870000e-24 122.0
33 TraesCS5A01G524800 chr6A 98.485 66 1 0 1 66 71458393 71458328 2.730000e-22 117.0
34 TraesCS5A01G524800 chr2B 76.250 240 40 16 4092 4323 472899924 472899694 1.270000e-20 111.0
35 TraesCS5A01G524800 chr2B 93.750 64 4 0 3 66 734751941 734751878 3.560000e-16 97.1
36 TraesCS5A01G524800 chr2D 92.208 77 6 0 1592 1668 477428907 477428983 4.570000e-20 110.0
37 TraesCS5A01G524800 chr2D 92.208 77 6 0 1592 1668 600611428 600611504 4.570000e-20 110.0
38 TraesCS5A01G524800 chr2A 85.965 57 8 0 1517 1573 114850501 114850557 1.300000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G524800 chr5A 685533162 685537484 4322 False 7984.00 7984 100.00000 1 4323 1 chr5A.!!$F4 4322
1 TraesCS5A01G524800 chr4D 502408091 502411615 3524 False 1071.05 2061 90.34325 728 4317 4 chr4D.!!$F2 3589
2 TraesCS5A01G524800 chr4B 646572513 646573232 719 False 765.00 765 86.50100 1011 1706 1 chr4B.!!$F2 695
3 TraesCS5A01G524800 chr4B 646651098 646658485 7387 False 667.80 1535 88.77760 150 4323 5 chr4B.!!$F4 4173
4 TraesCS5A01G524800 chr4B 50244366 50245695 1329 False 254.50 342 80.49600 1324 2874 2 chr4B.!!$F3 1550
5 TraesCS5A01G524800 chr3B 144080229 144081436 1207 True 346.00 372 80.68750 1294 3340 2 chr3B.!!$R1 2046

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.034059 CGTCTGGACAAGCAGAAGGT 59.966 55.000 1.63 0.00 0.00 3.50 F
139 140 0.105760 ATGGGCTGTTTGGAACACCA 60.106 50.000 5.85 5.85 40.49 4.17 F
459 460 0.331278 TTTGCAGATCCCCGGAACAT 59.669 50.000 0.73 0.00 0.00 2.71 F
1049 4363 1.008449 CTTCCTGAACCTCCTCCCCTA 59.992 57.143 0.00 0.00 0.00 3.53 F
2562 5990 0.324943 ACAGAACATTAGGTGCGGCT 59.675 50.000 0.00 0.00 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 5288 0.168128 GTCCCGGTTTCTGAAATGCG 59.832 55.0 6.06 0.00 0.00 4.73 R
1922 5303 0.179111 TGAAGTGCGATCATCGTCCC 60.179 55.0 9.23 0.00 42.81 4.46 R
1924 5305 2.194800 TCTGAAGTGCGATCATCGTC 57.805 50.0 9.23 1.64 42.81 4.20 R
2573 6001 0.318869 TTGCTTGTGATTGCAAGGCG 60.319 50.0 4.94 0.00 44.29 5.52 R
3931 7463 0.321741 TTTCTTTGGCATCGGCGGTA 60.322 50.0 7.21 0.00 42.47 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.832931 CGTCTGGACAAGCAGAAGG 58.167 57.895 1.63 0.00 0.00 3.46
19 20 0.034059 CGTCTGGACAAGCAGAAGGT 59.966 55.000 1.63 0.00 0.00 3.50
20 21 1.272490 CGTCTGGACAAGCAGAAGGTA 59.728 52.381 1.63 0.00 0.00 3.08
21 22 2.672478 CGTCTGGACAAGCAGAAGGTAG 60.672 54.545 1.63 0.00 0.00 3.18
22 23 1.902508 TCTGGACAAGCAGAAGGTAGG 59.097 52.381 0.00 0.00 0.00 3.18
23 24 1.625818 CTGGACAAGCAGAAGGTAGGT 59.374 52.381 0.00 0.00 0.00 3.08
24 25 2.039084 CTGGACAAGCAGAAGGTAGGTT 59.961 50.000 0.00 0.00 0.00 3.50
25 26 2.441750 TGGACAAGCAGAAGGTAGGTTT 59.558 45.455 0.00 0.00 0.00 3.27
26 27 3.649023 TGGACAAGCAGAAGGTAGGTTTA 59.351 43.478 0.00 0.00 0.00 2.01
27 28 4.001652 GGACAAGCAGAAGGTAGGTTTAC 58.998 47.826 0.00 0.00 0.00 2.01
39 40 5.388408 GGTAGGTTTACCGGATGATCTAG 57.612 47.826 9.46 0.00 40.02 2.43
40 41 4.321824 GGTAGGTTTACCGGATGATCTAGC 60.322 50.000 9.46 8.85 40.02 3.42
41 42 2.633481 AGGTTTACCGGATGATCTAGCC 59.367 50.000 9.46 0.00 42.08 3.93
42 43 2.633481 GGTTTACCGGATGATCTAGCCT 59.367 50.000 9.46 0.00 30.73 4.58
43 44 3.830755 GGTTTACCGGATGATCTAGCCTA 59.169 47.826 9.46 0.00 30.73 3.93
44 45 4.321824 GGTTTACCGGATGATCTAGCCTAC 60.322 50.000 9.46 0.00 30.73 3.18
45 46 1.926108 ACCGGATGATCTAGCCTACC 58.074 55.000 9.46 0.00 30.73 3.18
46 47 1.187087 CCGGATGATCTAGCCTACCC 58.813 60.000 0.00 0.00 30.73 3.69
47 48 1.272760 CCGGATGATCTAGCCTACCCT 60.273 57.143 0.00 0.00 30.73 4.34
48 49 1.821753 CGGATGATCTAGCCTACCCTG 59.178 57.143 0.00 0.00 30.73 4.45
49 50 2.555448 CGGATGATCTAGCCTACCCTGA 60.555 54.545 0.00 0.00 30.73 3.86
50 51 3.718723 GGATGATCTAGCCTACCCTGAT 58.281 50.000 0.00 0.00 0.00 2.90
51 52 3.704061 GGATGATCTAGCCTACCCTGATC 59.296 52.174 0.00 0.00 35.44 2.92
52 53 3.176924 TGATCTAGCCTACCCTGATCC 57.823 52.381 0.00 0.00 34.36 3.36
53 54 2.450886 TGATCTAGCCTACCCTGATCCA 59.549 50.000 0.00 0.00 34.36 3.41
54 55 3.116746 TGATCTAGCCTACCCTGATCCAA 60.117 47.826 0.00 0.00 34.36 3.53
55 56 3.414759 TCTAGCCTACCCTGATCCAAA 57.585 47.619 0.00 0.00 0.00 3.28
56 57 3.309296 TCTAGCCTACCCTGATCCAAAG 58.691 50.000 0.00 0.00 0.00 2.77
57 58 2.270434 AGCCTACCCTGATCCAAAGA 57.730 50.000 0.00 0.00 0.00 2.52
58 59 2.562296 AGCCTACCCTGATCCAAAGAA 58.438 47.619 0.00 0.00 0.00 2.52
59 60 3.126453 AGCCTACCCTGATCCAAAGAAT 58.874 45.455 0.00 0.00 0.00 2.40
60 61 3.137360 AGCCTACCCTGATCCAAAGAATC 59.863 47.826 0.00 0.00 0.00 2.52
61 62 3.137360 GCCTACCCTGATCCAAAGAATCT 59.863 47.826 0.00 0.00 0.00 2.40
62 63 4.348168 GCCTACCCTGATCCAAAGAATCTA 59.652 45.833 0.00 0.00 0.00 1.98
63 64 5.013599 GCCTACCCTGATCCAAAGAATCTAT 59.986 44.000 0.00 0.00 0.00 1.98
64 65 6.706295 CCTACCCTGATCCAAAGAATCTATC 58.294 44.000 0.00 0.00 0.00 2.08
65 66 6.270927 CCTACCCTGATCCAAAGAATCTATCA 59.729 42.308 0.00 0.00 0.00 2.15
66 67 5.934781 ACCCTGATCCAAAGAATCTATCAC 58.065 41.667 0.00 0.00 0.00 3.06
67 68 5.669447 ACCCTGATCCAAAGAATCTATCACT 59.331 40.000 0.00 0.00 0.00 3.41
68 69 6.183361 ACCCTGATCCAAAGAATCTATCACTC 60.183 42.308 0.00 0.00 0.00 3.51
69 70 6.183361 CCCTGATCCAAAGAATCTATCACTCA 60.183 42.308 0.00 0.00 0.00 3.41
70 71 7.278135 CCTGATCCAAAGAATCTATCACTCAA 58.722 38.462 0.00 0.00 0.00 3.02
71 72 7.772292 CCTGATCCAAAGAATCTATCACTCAAA 59.228 37.037 0.00 0.00 0.00 2.69
72 73 9.339850 CTGATCCAAAGAATCTATCACTCAAAT 57.660 33.333 0.00 0.00 0.00 2.32
73 74 9.334947 TGATCCAAAGAATCTATCACTCAAATC 57.665 33.333 0.00 0.00 0.00 2.17
74 75 9.558396 GATCCAAAGAATCTATCACTCAAATCT 57.442 33.333 0.00 0.00 0.00 2.40
75 76 9.917887 ATCCAAAGAATCTATCACTCAAATCTT 57.082 29.630 0.00 0.00 0.00 2.40
81 82 8.646900 AGAATCTATCACTCAAATCTTACCTCC 58.353 37.037 0.00 0.00 0.00 4.30
82 83 7.921041 ATCTATCACTCAAATCTTACCTCCA 57.079 36.000 0.00 0.00 0.00 3.86
83 84 7.733773 TCTATCACTCAAATCTTACCTCCAA 57.266 36.000 0.00 0.00 0.00 3.53
84 85 7.786030 TCTATCACTCAAATCTTACCTCCAAG 58.214 38.462 0.00 0.00 0.00 3.61
85 86 5.825593 TCACTCAAATCTTACCTCCAAGT 57.174 39.130 0.00 0.00 0.00 3.16
86 87 6.928348 TCACTCAAATCTTACCTCCAAGTA 57.072 37.500 0.00 0.00 0.00 2.24
87 88 6.698380 TCACTCAAATCTTACCTCCAAGTAC 58.302 40.000 0.00 0.00 0.00 2.73
88 89 5.875359 CACTCAAATCTTACCTCCAAGTACC 59.125 44.000 0.00 0.00 0.00 3.34
89 90 5.785940 ACTCAAATCTTACCTCCAAGTACCT 59.214 40.000 0.00 0.00 0.00 3.08
90 91 6.272558 ACTCAAATCTTACCTCCAAGTACCTT 59.727 38.462 0.00 0.00 0.00 3.50
91 92 7.086685 TCAAATCTTACCTCCAAGTACCTTT 57.913 36.000 0.00 0.00 0.00 3.11
92 93 7.523415 TCAAATCTTACCTCCAAGTACCTTTT 58.477 34.615 0.00 0.00 0.00 2.27
93 94 8.002459 TCAAATCTTACCTCCAAGTACCTTTTT 58.998 33.333 0.00 0.00 0.00 1.94
116 117 8.980481 TTTTTCTTGGAGATTTTCACTCTAGT 57.020 30.769 0.00 0.00 35.10 2.57
117 118 8.980481 TTTTCTTGGAGATTTTCACTCTAGTT 57.020 30.769 0.00 0.00 35.10 2.24
118 119 8.608844 TTTCTTGGAGATTTTCACTCTAGTTC 57.391 34.615 0.00 0.00 35.10 3.01
119 120 7.546250 TCTTGGAGATTTTCACTCTAGTTCT 57.454 36.000 0.00 0.00 35.10 3.01
120 121 8.651589 TCTTGGAGATTTTCACTCTAGTTCTA 57.348 34.615 0.00 0.00 35.10 2.10
121 122 9.261035 TCTTGGAGATTTTCACTCTAGTTCTAT 57.739 33.333 0.00 0.00 35.10 1.98
122 123 9.311916 CTTGGAGATTTTCACTCTAGTTCTATG 57.688 37.037 0.00 0.00 35.10 2.23
123 124 7.786030 TGGAGATTTTCACTCTAGTTCTATGG 58.214 38.462 0.00 0.00 35.10 2.74
124 125 7.147655 TGGAGATTTTCACTCTAGTTCTATGGG 60.148 40.741 0.00 0.00 35.10 4.00
125 126 6.587273 AGATTTTCACTCTAGTTCTATGGGC 58.413 40.000 0.00 0.00 0.00 5.36
126 127 6.385467 AGATTTTCACTCTAGTTCTATGGGCT 59.615 38.462 0.00 0.00 0.00 5.19
127 128 5.344743 TTTCACTCTAGTTCTATGGGCTG 57.655 43.478 0.00 0.00 0.00 4.85
128 129 3.982516 TCACTCTAGTTCTATGGGCTGT 58.017 45.455 0.00 0.00 0.00 4.40
129 130 4.353777 TCACTCTAGTTCTATGGGCTGTT 58.646 43.478 0.00 0.00 0.00 3.16
130 131 4.777896 TCACTCTAGTTCTATGGGCTGTTT 59.222 41.667 0.00 0.00 0.00 2.83
131 132 4.872691 CACTCTAGTTCTATGGGCTGTTTG 59.127 45.833 0.00 0.00 0.00 2.93
132 133 4.080863 ACTCTAGTTCTATGGGCTGTTTGG 60.081 45.833 0.00 0.00 0.00 3.28
133 134 4.101114 TCTAGTTCTATGGGCTGTTTGGA 58.899 43.478 0.00 0.00 0.00 3.53
134 135 3.806949 AGTTCTATGGGCTGTTTGGAA 57.193 42.857 0.00 0.00 0.00 3.53
135 136 3.421844 AGTTCTATGGGCTGTTTGGAAC 58.578 45.455 0.00 0.00 33.91 3.62
136 137 3.153919 GTTCTATGGGCTGTTTGGAACA 58.846 45.455 0.00 0.00 39.52 3.18
137 138 2.790433 TCTATGGGCTGTTTGGAACAC 58.210 47.619 0.00 0.00 39.29 3.32
138 139 1.818674 CTATGGGCTGTTTGGAACACC 59.181 52.381 0.00 0.00 39.29 4.16
139 140 0.105760 ATGGGCTGTTTGGAACACCA 60.106 50.000 5.85 5.85 40.49 4.17
140 141 0.754957 TGGGCTGTTTGGAACACCAG 60.755 55.000 11.64 0.00 39.29 4.00
141 142 0.755327 GGGCTGTTTGGAACACCAGT 60.755 55.000 11.64 0.00 39.29 4.00
142 143 1.477923 GGGCTGTTTGGAACACCAGTA 60.478 52.381 11.64 0.00 39.29 2.74
143 144 2.303175 GGCTGTTTGGAACACCAGTAA 58.697 47.619 0.00 0.00 39.29 2.24
144 145 2.890945 GGCTGTTTGGAACACCAGTAAT 59.109 45.455 0.00 0.00 39.29 1.89
145 146 3.305335 GGCTGTTTGGAACACCAGTAATG 60.305 47.826 0.00 0.00 39.29 1.90
146 147 3.568007 GCTGTTTGGAACACCAGTAATGA 59.432 43.478 0.00 0.00 39.29 2.57
147 148 4.556699 GCTGTTTGGAACACCAGTAATGAC 60.557 45.833 0.00 0.00 39.29 3.06
148 149 3.562141 TGTTTGGAACACCAGTAATGACG 59.438 43.478 0.00 0.00 39.29 4.35
195 196 4.006319 GAGCTTCACTGGCTTACTTTCAT 58.994 43.478 0.00 0.00 40.40 2.57
196 197 4.401925 AGCTTCACTGGCTTACTTTCATT 58.598 39.130 0.00 0.00 36.56 2.57
197 198 4.829492 AGCTTCACTGGCTTACTTTCATTT 59.171 37.500 0.00 0.00 36.56 2.32
199 200 5.278463 GCTTCACTGGCTTACTTTCATTTCA 60.278 40.000 0.00 0.00 0.00 2.69
200 201 6.707440 TTCACTGGCTTACTTTCATTTCAA 57.293 33.333 0.00 0.00 0.00 2.69
201 202 6.317789 TCACTGGCTTACTTTCATTTCAAG 57.682 37.500 0.00 0.00 0.00 3.02
202 203 5.241506 TCACTGGCTTACTTTCATTTCAAGG 59.758 40.000 0.00 0.00 0.00 3.61
203 204 4.021981 ACTGGCTTACTTTCATTTCAAGGC 60.022 41.667 0.00 0.00 40.92 4.35
204 205 3.894427 TGGCTTACTTTCATTTCAAGGCA 59.106 39.130 4.96 4.96 45.87 4.75
285 286 6.986817 GCCTTCTCTGTTTTAGATGTATAGCA 59.013 38.462 0.00 0.00 34.21 3.49
369 370 6.681729 AATCACTGGTGGAAGAAGTTACTA 57.318 37.500 0.70 0.00 0.00 1.82
388 389 8.686334 AGTTACTAATTCCCTCGTAAATCGTAA 58.314 33.333 0.00 0.00 40.80 3.18
396 397 7.627585 TCCCTCGTAAATCGTAATAAAATCG 57.372 36.000 0.00 0.00 40.80 3.34
421 422 4.744631 GCCAATACCCTTGCAAATATTTCG 59.255 41.667 0.00 0.00 0.00 3.46
436 437 2.063156 TTTCGTTGCATGCATCAACC 57.937 45.000 23.37 6.49 40.35 3.77
443 444 3.239587 TGCATGCATCAACCTGATTTG 57.760 42.857 18.46 0.00 34.28 2.32
446 447 3.186909 CATGCATCAACCTGATTTGCAG 58.813 45.455 0.00 0.00 43.11 4.41
447 448 3.093814 ATGCATCAACCTGATTTGCAGA 58.906 40.909 9.90 0.00 43.11 4.26
459 460 0.331278 TTTGCAGATCCCCGGAACAT 59.669 50.000 0.73 0.00 0.00 2.71
492 494 9.979578 TGCATTGTAAATTATGAATATCCAACC 57.020 29.630 0.00 0.00 0.00 3.77
515 517 9.862371 AACCTTTTGAAAACAAAACAAAACTTT 57.138 22.222 0.00 0.00 38.17 2.66
516 518 9.862371 ACCTTTTGAAAACAAAACAAAACTTTT 57.138 22.222 0.00 0.00 38.17 2.27
564 566 7.323420 ACTCATGATTCTCGAATTAAGACACA 58.677 34.615 0.00 0.00 0.00 3.72
576 578 7.488150 TCGAATTAAGACACATCTGTACACATC 59.512 37.037 0.00 0.00 34.48 3.06
580 582 5.991933 AGACACATCTGTACACATCTTCT 57.008 39.130 0.00 0.00 32.29 2.85
581 583 7.468141 AAGACACATCTGTACACATCTTCTA 57.532 36.000 0.00 0.00 34.48 2.10
582 584 7.468141 AGACACATCTGTACACATCTTCTAA 57.532 36.000 0.00 0.00 32.29 2.10
583 585 7.542890 AGACACATCTGTACACATCTTCTAAG 58.457 38.462 0.00 0.00 32.29 2.18
584 586 7.177568 AGACACATCTGTACACATCTTCTAAGT 59.822 37.037 0.00 0.00 32.29 2.24
585 587 7.671302 ACACATCTGTACACATCTTCTAAGTT 58.329 34.615 0.00 0.00 0.00 2.66
586 588 7.600375 ACACATCTGTACACATCTTCTAAGTTG 59.400 37.037 0.00 0.31 33.13 3.16
590 592 9.640963 ATCTGTACACATCTTCTAAGTTGTAAC 57.359 33.333 6.19 8.14 36.96 2.50
608 610 8.095169 AGTTGTAACTTGTAAGGTTCTATGGAG 58.905 37.037 0.00 0.00 35.21 3.86
609 611 7.786046 TGTAACTTGTAAGGTTCTATGGAGA 57.214 36.000 0.00 0.00 0.00 3.71
613 615 5.422650 ACTTGTAAGGTTCTATGGAGAGGAC 59.577 44.000 0.00 0.00 31.77 3.85
632 634 2.432972 CCGCTGCAATTTGTGGGC 60.433 61.111 0.00 0.20 0.00 5.36
633 635 2.806198 CGCTGCAATTTGTGGGCG 60.806 61.111 14.31 14.31 36.89 6.13
635 637 1.216178 GCTGCAATTTGTGGGCGAT 59.784 52.632 0.00 0.00 0.00 4.58
644 646 2.514824 GTGGGCGATGAGAAGGGC 60.515 66.667 0.00 0.00 0.00 5.19
655 657 3.914426 TGAGAAGGGCCTCATTAGTTC 57.086 47.619 6.46 0.00 38.18 3.01
670 672 7.334844 TCATTAGTTCGACTCTATCATGTGT 57.665 36.000 0.00 0.00 0.00 3.72
676 678 3.628032 TCGACTCTATCATGTGTCCTGAC 59.372 47.826 0.00 0.00 0.00 3.51
680 682 4.214310 CTCTATCATGTGTCCTGACTCCT 58.786 47.826 0.00 0.00 0.00 3.69
683 685 2.174360 TCATGTGTCCTGACTCCTGAG 58.826 52.381 0.00 0.00 30.21 3.35
691 693 3.366629 GACTCCTGAGTCGTGGCA 58.633 61.111 11.25 0.00 46.93 4.92
692 694 1.080434 GACTCCTGAGTCGTGGCAC 60.080 63.158 7.79 7.79 46.93 5.01
693 695 1.806461 GACTCCTGAGTCGTGGCACA 61.806 60.000 19.09 1.83 46.93 4.57
694 696 2.088674 ACTCCTGAGTCGTGGCACAC 62.089 60.000 19.09 14.33 46.23 3.82
731 3811 6.896021 TTTGAAAAACATAACCGTATCCCA 57.104 33.333 0.00 0.00 0.00 4.37
733 3813 5.562635 TGAAAAACATAACCGTATCCCAGT 58.437 37.500 0.00 0.00 0.00 4.00
764 3844 5.489792 TGCTCTCCTCATCTTTTAGTGTT 57.510 39.130 0.00 0.00 0.00 3.32
830 3976 4.470334 TTCCAGAACTTTGCTTGCTTTT 57.530 36.364 0.00 0.00 0.00 2.27
946 4245 1.374758 GTCCCAAGCCACTCACTCG 60.375 63.158 0.00 0.00 0.00 4.18
1014 4328 4.740822 AGCATGAACCACGGGGCC 62.741 66.667 1.73 0.00 37.90 5.80
1049 4363 1.008449 CTTCCTGAACCTCCTCCCCTA 59.992 57.143 0.00 0.00 0.00 3.53
1107 4430 2.100631 GCCTGGTTCGTCGTCATGG 61.101 63.158 0.00 0.00 0.00 3.66
1130 4453 3.238497 CTCCGTCCACCACCACCA 61.238 66.667 0.00 0.00 0.00 4.17
1131 4454 3.530910 CTCCGTCCACCACCACCAC 62.531 68.421 0.00 0.00 0.00 4.16
1132 4455 4.636435 CCGTCCACCACCACCACC 62.636 72.222 0.00 0.00 0.00 4.61
1273 4596 6.348478 TGGAATTGATTAAGGGGGTCATTA 57.652 37.500 0.00 0.00 0.00 1.90
1274 4597 6.746894 TGGAATTGATTAAGGGGGTCATTAA 58.253 36.000 0.00 0.00 34.31 1.40
1275 4598 6.838612 TGGAATTGATTAAGGGGGTCATTAAG 59.161 38.462 0.00 0.00 33.48 1.85
1362 4693 4.796231 GTCATCGTCGGCGCCACT 62.796 66.667 28.98 6.12 38.14 4.00
1496 4831 2.432628 GCTCACCACTCGTTCCCG 60.433 66.667 0.00 0.00 0.00 5.14
1543 4890 4.094887 TCTGTTTCAGTTTGTGAGTGCTTC 59.905 41.667 0.00 0.00 36.21 3.86
1643 5003 5.644977 CTCCATAGCACAGGTATCGATTA 57.355 43.478 1.71 0.00 0.00 1.75
1653 5016 5.403766 CACAGGTATCGATTAGCATCTTCAC 59.596 44.000 1.71 0.00 0.00 3.18
1668 5032 3.476552 TCTTCACCTGTGGAATGTTGAC 58.523 45.455 0.00 0.00 0.00 3.18
1674 5038 3.072915 ACCTGTGGAATGTTGACTCATCA 59.927 43.478 0.00 0.00 0.00 3.07
1675 5039 4.263639 ACCTGTGGAATGTTGACTCATCAT 60.264 41.667 0.00 0.00 33.85 2.45
1831 5204 5.985530 TCCAATGTCAAGAATATACGAGCTG 59.014 40.000 0.00 0.00 0.00 4.24
1887 5268 1.697982 AGGGAGTAGCAAACCGAAACT 59.302 47.619 0.00 0.00 0.00 2.66
1895 5276 9.269453 GGAGTAGCAAACCGAAACTAATAATAT 57.731 33.333 0.00 0.00 0.00 1.28
1922 5303 2.969443 AGAACGCATTTCAGAAACCG 57.031 45.000 13.48 13.48 36.57 4.44
1924 5305 0.596082 AACGCATTTCAGAAACCGGG 59.404 50.000 6.32 13.24 0.00 5.73
1984 5389 7.221452 ACGTTGTTCAGTTACTTTGTAGTACTG 59.779 37.037 5.39 0.00 36.61 2.74
1985 5390 7.221452 CGTTGTTCAGTTACTTTGTAGTACTGT 59.779 37.037 5.39 0.00 36.61 3.55
2059 5469 6.293298 GCAGAACATAGTGGATGCTTAGATTG 60.293 42.308 0.00 0.00 39.39 2.67
2096 5506 5.066913 TCTTAGATGGATGCCTCAGACTA 57.933 43.478 0.00 0.00 0.00 2.59
2288 5706 3.058085 GGTAAGGCTACTACTGCTCGATC 60.058 52.174 0.00 0.00 0.00 3.69
2300 5718 5.704217 ACTGCTCGATCGTTTCTAAAATC 57.296 39.130 15.94 0.00 0.00 2.17
2303 5721 5.116180 TGCTCGATCGTTTCTAAAATCCAT 58.884 37.500 15.94 0.00 0.00 3.41
2473 5901 3.649843 TCAAGACCTAACCCATCGGTAT 58.350 45.455 0.00 0.00 43.71 2.73
2508 5936 4.074970 ACAAGTTAACCCTCTGCATTCAG 58.925 43.478 0.88 0.00 41.67 3.02
2540 5968 4.724074 GGATGTCTTCCAATCATTTGCA 57.276 40.909 0.00 0.00 44.74 4.08
2541 5969 5.272283 GGATGTCTTCCAATCATTTGCAT 57.728 39.130 0.00 0.00 44.74 3.96
2542 5970 5.287226 GGATGTCTTCCAATCATTTGCATC 58.713 41.667 0.00 0.00 44.74 3.91
2543 5971 5.163488 GGATGTCTTCCAATCATTTGCATCA 60.163 40.000 0.00 0.00 44.74 3.07
2544 5972 5.063180 TGTCTTCCAATCATTTGCATCAC 57.937 39.130 0.00 0.00 0.00 3.06
2545 5973 4.523558 TGTCTTCCAATCATTTGCATCACA 59.476 37.500 0.00 0.00 0.00 3.58
2546 5974 5.100259 GTCTTCCAATCATTTGCATCACAG 58.900 41.667 0.00 0.00 0.00 3.66
2547 5975 5.011586 TCTTCCAATCATTTGCATCACAGA 58.988 37.500 0.00 0.00 0.00 3.41
2548 5976 5.477637 TCTTCCAATCATTTGCATCACAGAA 59.522 36.000 0.00 0.00 0.00 3.02
2549 5977 5.063180 TCCAATCATTTGCATCACAGAAC 57.937 39.130 0.00 0.00 0.00 3.01
2550 5978 4.523558 TCCAATCATTTGCATCACAGAACA 59.476 37.500 0.00 0.00 0.00 3.18
2551 5979 5.186215 TCCAATCATTTGCATCACAGAACAT 59.814 36.000 0.00 0.00 0.00 2.71
2552 5980 5.872617 CCAATCATTTGCATCACAGAACATT 59.127 36.000 0.00 0.00 0.00 2.71
2553 5981 7.036829 CCAATCATTTGCATCACAGAACATTA 58.963 34.615 0.00 0.00 0.00 1.90
2554 5982 7.222031 CCAATCATTTGCATCACAGAACATTAG 59.778 37.037 0.00 0.00 0.00 1.73
2555 5983 6.198650 TCATTTGCATCACAGAACATTAGG 57.801 37.500 0.00 0.00 0.00 2.69
2556 5984 5.711506 TCATTTGCATCACAGAACATTAGGT 59.288 36.000 0.00 0.00 0.00 3.08
2557 5985 5.375417 TTTGCATCACAGAACATTAGGTG 57.625 39.130 0.00 0.00 0.00 4.00
2558 5986 2.749076 TGCATCACAGAACATTAGGTGC 59.251 45.455 0.00 0.00 0.00 5.01
2559 5987 2.223112 GCATCACAGAACATTAGGTGCG 60.223 50.000 0.00 0.00 0.00 5.34
2560 5988 2.093306 TCACAGAACATTAGGTGCGG 57.907 50.000 0.00 0.00 0.00 5.69
2561 5989 0.447801 CACAGAACATTAGGTGCGGC 59.552 55.000 0.00 0.00 0.00 6.53
2562 5990 0.324943 ACAGAACATTAGGTGCGGCT 59.675 50.000 0.00 0.00 0.00 5.52
2563 5991 1.553248 ACAGAACATTAGGTGCGGCTA 59.447 47.619 0.00 0.00 0.00 3.93
2564 5992 2.027561 ACAGAACATTAGGTGCGGCTAA 60.028 45.455 0.00 0.00 0.00 3.09
2565 5993 3.206150 CAGAACATTAGGTGCGGCTAAT 58.794 45.455 0.00 0.00 0.00 1.73
2566 5994 4.141801 ACAGAACATTAGGTGCGGCTAATA 60.142 41.667 0.00 0.00 0.00 0.98
2567 5995 4.997395 CAGAACATTAGGTGCGGCTAATAT 59.003 41.667 0.00 0.00 0.00 1.28
2568 5996 5.470098 CAGAACATTAGGTGCGGCTAATATT 59.530 40.000 0.00 0.00 0.00 1.28
2569 5997 6.017109 CAGAACATTAGGTGCGGCTAATATTT 60.017 38.462 0.00 0.00 0.00 1.40
2570 5998 6.546034 AGAACATTAGGTGCGGCTAATATTTT 59.454 34.615 0.00 0.00 0.00 1.82
2571 5999 7.717875 AGAACATTAGGTGCGGCTAATATTTTA 59.282 33.333 0.00 0.00 0.00 1.52
2572 6000 7.198306 ACATTAGGTGCGGCTAATATTTTAC 57.802 36.000 0.00 0.00 0.00 2.01
2573 6001 6.206048 ACATTAGGTGCGGCTAATATTTTACC 59.794 38.462 0.00 0.00 0.00 2.85
2574 6002 3.135994 AGGTGCGGCTAATATTTTACCG 58.864 45.455 15.36 15.36 46.50 4.02
2579 6007 4.141855 CGGCTAATATTTTACCGCCTTG 57.858 45.455 9.61 0.00 37.05 3.61
2580 6008 3.608474 CGGCTAATATTTTACCGCCTTGC 60.608 47.826 9.61 0.00 37.05 4.01
2581 6009 3.316868 GGCTAATATTTTACCGCCTTGCA 59.683 43.478 0.00 0.00 34.80 4.08
2582 6010 4.202070 GGCTAATATTTTACCGCCTTGCAA 60.202 41.667 0.00 0.00 34.80 4.08
2583 6011 5.508994 GGCTAATATTTTACCGCCTTGCAAT 60.509 40.000 0.00 0.00 34.80 3.56
2584 6012 5.629435 GCTAATATTTTACCGCCTTGCAATC 59.371 40.000 0.00 0.00 0.00 2.67
2585 6013 5.590530 AATATTTTACCGCCTTGCAATCA 57.409 34.783 0.00 0.00 0.00 2.57
2586 6014 2.715737 TTTTACCGCCTTGCAATCAC 57.284 45.000 0.00 0.00 0.00 3.06
2587 6015 1.610363 TTTACCGCCTTGCAATCACA 58.390 45.000 0.00 0.00 0.00 3.58
2588 6016 1.610363 TTACCGCCTTGCAATCACAA 58.390 45.000 0.00 0.00 0.00 3.33
2589 6017 1.164411 TACCGCCTTGCAATCACAAG 58.836 50.000 0.00 0.00 45.42 3.16
2590 6018 1.444895 CCGCCTTGCAATCACAAGC 60.445 57.895 0.00 0.00 44.66 4.01
2591 6019 1.286570 CGCCTTGCAATCACAAGCA 59.713 52.632 0.00 0.00 44.66 3.91
2597 6025 1.250328 TGCAATCACAAGCAAGAGGG 58.750 50.000 0.00 0.00 37.90 4.30
2598 6026 0.529378 GCAATCACAAGCAAGAGGGG 59.471 55.000 0.00 0.00 0.00 4.79
2599 6027 1.887956 GCAATCACAAGCAAGAGGGGA 60.888 52.381 0.00 0.00 0.00 4.81
2600 6028 2.517959 CAATCACAAGCAAGAGGGGAA 58.482 47.619 0.00 0.00 0.00 3.97
2601 6029 2.892852 CAATCACAAGCAAGAGGGGAAA 59.107 45.455 0.00 0.00 0.00 3.13
2602 6030 2.746279 TCACAAGCAAGAGGGGAAAA 57.254 45.000 0.00 0.00 0.00 2.29
2632 6061 4.143052 GGAAAACGTTTACAGTACCCATCG 60.143 45.833 15.03 0.00 0.00 3.84
2700 6143 2.426522 TGCTAGACTGATGTTTGGCAC 58.573 47.619 0.00 0.00 39.21 5.01
2808 6251 5.511545 GGATTCCGATAATCCAGTAAGTGCT 60.512 44.000 19.06 0.00 44.33 4.40
2821 6265 5.374080 CAGTAAGTGCTACACAAACATTCG 58.626 41.667 0.00 0.00 36.74 3.34
2822 6266 5.176774 CAGTAAGTGCTACACAAACATTCGA 59.823 40.000 0.00 0.00 36.74 3.71
2853 6297 6.604930 TCCTTTCGGCGTAAATTTTTAGAAG 58.395 36.000 6.85 0.00 0.00 2.85
2866 6310 8.831715 AAATTTTTAGAAGTAACATTGGCAGG 57.168 30.769 0.00 0.00 0.00 4.85
2885 6329 4.833478 AGGAGCACTGATATGTCACTTT 57.167 40.909 0.00 0.00 0.00 2.66
2886 6330 5.939764 AGGAGCACTGATATGTCACTTTA 57.060 39.130 0.00 0.00 0.00 1.85
2887 6331 6.491714 AGGAGCACTGATATGTCACTTTAT 57.508 37.500 0.00 0.00 0.00 1.40
2892 6336 7.112122 AGCACTGATATGTCACTTTATTCCAA 58.888 34.615 0.00 0.00 0.00 3.53
2894 6377 8.408601 GCACTGATATGTCACTTTATTCCAAAT 58.591 33.333 0.00 0.00 0.00 2.32
2934 6419 7.176515 ACTGCAAATGATATGTTCCACAAACTA 59.823 33.333 0.00 0.00 38.76 2.24
2956 6442 1.197721 CTGGCTAGTGTTGAAAAGGCG 59.802 52.381 0.00 0.00 37.34 5.52
3019 6505 1.075659 GGTTCTTCCAGGGCTTGCT 59.924 57.895 0.00 0.00 35.97 3.91
3060 6546 3.976490 CTGGCCCCGGAGAGGTACA 62.976 68.421 0.73 0.00 38.74 2.90
3066 6552 0.680061 CCCGGAGAGGTACATAAGCC 59.320 60.000 0.73 0.00 38.74 4.35
3068 6554 1.410004 CGGAGAGGTACATAAGCCCA 58.590 55.000 0.00 0.00 0.00 5.36
3104 6592 5.041191 ACTGAACTTTGGATGAACTGACT 57.959 39.130 0.00 0.00 0.00 3.41
3177 6670 2.042464 CAGAGCCTAATGCCAGGACTA 58.958 52.381 0.00 0.00 42.71 2.59
3243 6736 3.550820 TGCACTTTTCATGTGGTGTACT 58.449 40.909 0.00 0.00 36.08 2.73
3334 6840 8.329203 AGAAGTTCTTGTAGGAAATGATCAAC 57.671 34.615 0.00 0.00 0.00 3.18
3355 6861 6.764560 TCAACTCACATTCACATATCATGAGG 59.235 38.462 0.09 0.00 37.10 3.86
3361 6867 6.872547 CACATTCACATATCATGAGGACTAGG 59.127 42.308 0.09 0.00 0.00 3.02
3553 7069 7.443272 CCATGCATAAGATGACACTTCTGATAA 59.557 37.037 0.00 0.00 0.00 1.75
3587 7103 0.886563 AAGCAAGCTGATGACAAGCC 59.113 50.000 0.00 0.00 0.00 4.35
3638 7155 7.913674 ATACTGTTAGAGGCTTTTTCAGAAG 57.086 36.000 13.16 0.00 0.00 2.85
3727 7244 1.729586 TTGGAACTCTAGTGCACCCT 58.270 50.000 14.63 0.00 0.00 4.34
3838 7365 5.001232 GGAGCCTTGTAACTACAAACATCA 58.999 41.667 4.01 0.00 44.67 3.07
3841 7368 5.701290 AGCCTTGTAACTACAAACATCAGTC 59.299 40.000 4.01 0.00 44.67 3.51
3866 7393 6.861572 CCAAATATTCATAGCAGCATCAACAG 59.138 38.462 0.00 0.00 0.00 3.16
3931 7463 6.206395 TCCATGCACAAATTCGACATATTT 57.794 33.333 0.00 0.00 0.00 1.40
3995 7537 5.063204 TGTATATTCAGCAATACACAGGCC 58.937 41.667 0.00 0.00 34.47 5.19
3997 7539 2.284754 TTCAGCAATACACAGGCCAA 57.715 45.000 5.01 0.00 0.00 4.52
4078 7621 8.690203 TTCATCTTGAACCATCTAGTTTTCAA 57.310 30.769 9.10 9.10 36.70 2.69
4104 7676 2.545526 CACGCCAATCATAGCAAGGTAG 59.454 50.000 0.00 0.00 0.00 3.18
4153 7725 6.691754 TTGCAGATTAAAGTGTCAAACTGA 57.308 33.333 0.00 0.00 39.81 3.41
4260 7834 1.739466 GTTCAAGCCATGATCTTCGCA 59.261 47.619 0.00 0.00 38.03 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.034059 ACCTTCTGCTTGTCCAGACG 59.966 55.000 0.00 0.00 41.28 4.18
1 2 2.354203 CCTACCTTCTGCTTGTCCAGAC 60.354 54.545 0.00 0.00 41.28 3.51
2 3 1.902508 CCTACCTTCTGCTTGTCCAGA 59.097 52.381 0.00 0.00 39.94 3.86
3 4 1.625818 ACCTACCTTCTGCTTGTCCAG 59.374 52.381 0.00 0.00 0.00 3.86
4 5 1.729586 ACCTACCTTCTGCTTGTCCA 58.270 50.000 0.00 0.00 0.00 4.02
5 6 2.861147 AACCTACCTTCTGCTTGTCC 57.139 50.000 0.00 0.00 0.00 4.02
6 7 4.001652 GGTAAACCTACCTTCTGCTTGTC 58.998 47.826 0.00 0.00 43.92 3.18
7 8 3.556423 CGGTAAACCTACCTTCTGCTTGT 60.556 47.826 0.00 0.00 44.96 3.16
8 9 3.000727 CGGTAAACCTACCTTCTGCTTG 58.999 50.000 0.00 0.00 44.96 4.01
9 10 2.027469 CCGGTAAACCTACCTTCTGCTT 60.027 50.000 0.00 0.00 44.96 3.91
10 11 1.553704 CCGGTAAACCTACCTTCTGCT 59.446 52.381 0.00 0.00 44.96 4.24
11 12 1.551883 TCCGGTAAACCTACCTTCTGC 59.448 52.381 0.00 0.00 44.96 4.26
12 13 3.449737 TCATCCGGTAAACCTACCTTCTG 59.550 47.826 0.00 0.00 44.96 3.02
13 14 3.716431 TCATCCGGTAAACCTACCTTCT 58.284 45.455 0.00 0.00 44.96 2.85
14 15 4.344390 AGATCATCCGGTAAACCTACCTTC 59.656 45.833 0.00 0.00 44.96 3.46
15 16 4.296056 AGATCATCCGGTAAACCTACCTT 58.704 43.478 0.00 0.00 44.96 3.50
16 17 3.924922 AGATCATCCGGTAAACCTACCT 58.075 45.455 0.00 0.00 44.96 3.08
17 18 4.321824 GCTAGATCATCCGGTAAACCTACC 60.322 50.000 0.00 0.00 43.86 3.18
18 19 4.321824 GGCTAGATCATCCGGTAAACCTAC 60.322 50.000 0.00 0.00 0.00 3.18
19 20 3.830755 GGCTAGATCATCCGGTAAACCTA 59.169 47.826 0.00 0.00 0.00 3.08
20 21 2.633481 GGCTAGATCATCCGGTAAACCT 59.367 50.000 0.00 0.00 0.00 3.50
21 22 2.633481 AGGCTAGATCATCCGGTAAACC 59.367 50.000 0.00 0.00 0.00 3.27
22 23 4.321824 GGTAGGCTAGATCATCCGGTAAAC 60.322 50.000 0.00 0.00 0.00 2.01
23 24 3.830755 GGTAGGCTAGATCATCCGGTAAA 59.169 47.826 0.00 0.00 0.00 2.01
24 25 3.428532 GGTAGGCTAGATCATCCGGTAA 58.571 50.000 0.00 0.00 0.00 2.85
25 26 2.291411 GGGTAGGCTAGATCATCCGGTA 60.291 54.545 0.00 0.00 0.00 4.02
26 27 1.550409 GGGTAGGCTAGATCATCCGGT 60.550 57.143 0.00 0.00 0.00 5.28
27 28 1.187087 GGGTAGGCTAGATCATCCGG 58.813 60.000 0.00 0.00 0.00 5.14
28 29 1.821753 CAGGGTAGGCTAGATCATCCG 59.178 57.143 0.00 0.00 0.00 4.18
29 30 3.176924 TCAGGGTAGGCTAGATCATCC 57.823 52.381 0.00 0.00 0.00 3.51
30 31 3.704061 GGATCAGGGTAGGCTAGATCATC 59.296 52.174 17.96 7.48 37.44 2.92
31 32 3.078153 TGGATCAGGGTAGGCTAGATCAT 59.922 47.826 17.96 0.00 37.44 2.45
32 33 2.450886 TGGATCAGGGTAGGCTAGATCA 59.549 50.000 17.96 6.66 37.44 2.92
33 34 3.176924 TGGATCAGGGTAGGCTAGATC 57.823 52.381 11.21 11.21 35.52 2.75
34 35 3.637821 TTGGATCAGGGTAGGCTAGAT 57.362 47.619 0.00 0.00 0.00 1.98
35 36 3.052109 TCTTTGGATCAGGGTAGGCTAGA 60.052 47.826 0.00 0.00 0.00 2.43
36 37 3.309296 TCTTTGGATCAGGGTAGGCTAG 58.691 50.000 0.00 0.00 0.00 3.42
37 38 3.414759 TCTTTGGATCAGGGTAGGCTA 57.585 47.619 0.00 0.00 0.00 3.93
38 39 2.270434 TCTTTGGATCAGGGTAGGCT 57.730 50.000 0.00 0.00 0.00 4.58
39 40 3.137360 AGATTCTTTGGATCAGGGTAGGC 59.863 47.826 0.00 0.00 0.00 3.93
40 41 6.270927 TGATAGATTCTTTGGATCAGGGTAGG 59.729 42.308 0.00 0.00 0.00 3.18
41 42 7.016072 AGTGATAGATTCTTTGGATCAGGGTAG 59.984 40.741 0.00 0.00 0.00 3.18
42 43 6.846505 AGTGATAGATTCTTTGGATCAGGGTA 59.153 38.462 0.00 0.00 0.00 3.69
43 44 5.669447 AGTGATAGATTCTTTGGATCAGGGT 59.331 40.000 0.00 0.00 0.00 4.34
44 45 6.183361 TGAGTGATAGATTCTTTGGATCAGGG 60.183 42.308 0.00 0.00 0.00 4.45
45 46 6.824553 TGAGTGATAGATTCTTTGGATCAGG 58.175 40.000 0.00 0.00 0.00 3.86
46 47 8.728337 TTTGAGTGATAGATTCTTTGGATCAG 57.272 34.615 0.00 0.00 0.00 2.90
47 48 9.334947 GATTTGAGTGATAGATTCTTTGGATCA 57.665 33.333 0.00 0.00 0.00 2.92
48 49 9.558396 AGATTTGAGTGATAGATTCTTTGGATC 57.442 33.333 0.00 0.00 0.00 3.36
49 50 9.917887 AAGATTTGAGTGATAGATTCTTTGGAT 57.082 29.630 0.00 0.00 0.00 3.41
55 56 8.646900 GGAGGTAAGATTTGAGTGATAGATTCT 58.353 37.037 0.00 0.00 0.00 2.40
56 57 8.424918 TGGAGGTAAGATTTGAGTGATAGATTC 58.575 37.037 0.00 0.00 0.00 2.52
57 58 8.324191 TGGAGGTAAGATTTGAGTGATAGATT 57.676 34.615 0.00 0.00 0.00 2.40
58 59 7.921041 TGGAGGTAAGATTTGAGTGATAGAT 57.079 36.000 0.00 0.00 0.00 1.98
59 60 7.400339 ACTTGGAGGTAAGATTTGAGTGATAGA 59.600 37.037 0.00 0.00 0.00 1.98
60 61 7.560368 ACTTGGAGGTAAGATTTGAGTGATAG 58.440 38.462 0.00 0.00 0.00 2.08
61 62 7.496346 ACTTGGAGGTAAGATTTGAGTGATA 57.504 36.000 0.00 0.00 0.00 2.15
62 63 6.380079 ACTTGGAGGTAAGATTTGAGTGAT 57.620 37.500 0.00 0.00 0.00 3.06
63 64 5.825593 ACTTGGAGGTAAGATTTGAGTGA 57.174 39.130 0.00 0.00 0.00 3.41
64 65 5.875359 GGTACTTGGAGGTAAGATTTGAGTG 59.125 44.000 0.00 0.00 0.00 3.51
65 66 5.785940 AGGTACTTGGAGGTAAGATTTGAGT 59.214 40.000 0.00 0.00 27.25 3.41
66 67 6.301169 AGGTACTTGGAGGTAAGATTTGAG 57.699 41.667 0.00 0.00 27.25 3.02
91 92 8.980481 ACTAGAGTGAAAATCTCCAAGAAAAA 57.020 30.769 0.00 0.00 35.71 1.94
92 93 8.980481 AACTAGAGTGAAAATCTCCAAGAAAA 57.020 30.769 0.00 0.00 35.71 2.29
93 94 8.432805 AGAACTAGAGTGAAAATCTCCAAGAAA 58.567 33.333 0.00 0.00 35.71 2.52
94 95 7.967908 AGAACTAGAGTGAAAATCTCCAAGAA 58.032 34.615 0.00 0.00 35.71 2.52
95 96 7.546250 AGAACTAGAGTGAAAATCTCCAAGA 57.454 36.000 0.00 0.00 35.71 3.02
96 97 9.311916 CATAGAACTAGAGTGAAAATCTCCAAG 57.688 37.037 0.00 0.00 35.71 3.61
97 98 8.260818 CCATAGAACTAGAGTGAAAATCTCCAA 58.739 37.037 0.00 0.00 35.71 3.53
98 99 7.147655 CCCATAGAACTAGAGTGAAAATCTCCA 60.148 40.741 0.00 0.00 35.71 3.86
99 100 7.213678 CCCATAGAACTAGAGTGAAAATCTCC 58.786 42.308 0.00 0.00 35.71 3.71
100 101 6.704050 GCCCATAGAACTAGAGTGAAAATCTC 59.296 42.308 0.00 0.00 35.71 2.75
101 102 6.385467 AGCCCATAGAACTAGAGTGAAAATCT 59.615 38.462 0.00 0.00 46.62 2.40
102 103 6.481644 CAGCCCATAGAACTAGAGTGAAAATC 59.518 42.308 0.00 0.00 0.00 2.17
103 104 6.069963 ACAGCCCATAGAACTAGAGTGAAAAT 60.070 38.462 0.00 0.00 0.00 1.82
104 105 5.248477 ACAGCCCATAGAACTAGAGTGAAAA 59.752 40.000 0.00 0.00 0.00 2.29
105 106 4.777896 ACAGCCCATAGAACTAGAGTGAAA 59.222 41.667 0.00 0.00 0.00 2.69
106 107 4.353777 ACAGCCCATAGAACTAGAGTGAA 58.646 43.478 0.00 0.00 0.00 3.18
107 108 3.982516 ACAGCCCATAGAACTAGAGTGA 58.017 45.455 0.00 0.00 0.00 3.41
108 109 4.744795 AACAGCCCATAGAACTAGAGTG 57.255 45.455 0.00 0.00 0.00 3.51
109 110 4.080863 CCAAACAGCCCATAGAACTAGAGT 60.081 45.833 0.00 0.00 0.00 3.24
110 111 4.162320 TCCAAACAGCCCATAGAACTAGAG 59.838 45.833 0.00 0.00 0.00 2.43
111 112 4.101114 TCCAAACAGCCCATAGAACTAGA 58.899 43.478 0.00 0.00 0.00 2.43
112 113 4.487714 TCCAAACAGCCCATAGAACTAG 57.512 45.455 0.00 0.00 0.00 2.57
113 114 4.042311 TGTTCCAAACAGCCCATAGAACTA 59.958 41.667 0.00 0.00 36.25 2.24
114 115 3.181434 TGTTCCAAACAGCCCATAGAACT 60.181 43.478 0.00 0.00 36.25 3.01
115 116 3.057526 GTGTTCCAAACAGCCCATAGAAC 60.058 47.826 0.00 0.00 43.10 3.01
116 117 3.153919 GTGTTCCAAACAGCCCATAGAA 58.846 45.455 0.00 0.00 43.10 2.10
117 118 2.790433 GTGTTCCAAACAGCCCATAGA 58.210 47.619 0.00 0.00 43.10 1.98
125 126 4.319477 CGTCATTACTGGTGTTCCAAACAG 60.319 45.833 0.00 0.00 43.81 3.16
126 127 3.562141 CGTCATTACTGGTGTTCCAAACA 59.438 43.478 0.00 0.00 43.81 2.83
127 128 3.562557 ACGTCATTACTGGTGTTCCAAAC 59.437 43.478 0.00 0.00 43.81 2.93
128 129 3.810941 GACGTCATTACTGGTGTTCCAAA 59.189 43.478 11.55 0.00 43.81 3.28
129 130 3.181464 TGACGTCATTACTGGTGTTCCAA 60.181 43.478 15.76 0.00 43.81 3.53
130 131 2.365941 TGACGTCATTACTGGTGTTCCA 59.634 45.455 15.76 0.00 42.05 3.53
131 132 3.034721 TGACGTCATTACTGGTGTTCC 57.965 47.619 15.76 0.00 0.00 3.62
132 133 3.181520 GCATGACGTCATTACTGGTGTTC 60.182 47.826 28.04 2.35 33.61 3.18
133 134 2.742053 GCATGACGTCATTACTGGTGTT 59.258 45.455 28.04 1.32 33.61 3.32
134 135 2.289382 TGCATGACGTCATTACTGGTGT 60.289 45.455 28.04 2.14 33.61 4.16
135 136 2.345876 TGCATGACGTCATTACTGGTG 58.654 47.619 28.04 17.41 33.61 4.17
136 137 2.621338 CTGCATGACGTCATTACTGGT 58.379 47.619 28.04 3.79 33.61 4.00
137 138 1.935873 CCTGCATGACGTCATTACTGG 59.064 52.381 28.04 27.01 33.61 4.00
138 139 1.328680 GCCTGCATGACGTCATTACTG 59.671 52.381 28.04 23.11 33.61 2.74
139 140 1.656652 GCCTGCATGACGTCATTACT 58.343 50.000 28.04 5.87 33.61 2.24
140 141 0.301687 CGCCTGCATGACGTCATTAC 59.698 55.000 28.04 22.05 33.61 1.89
141 142 0.174617 TCGCCTGCATGACGTCATTA 59.825 50.000 28.04 18.29 33.61 1.90
142 143 0.673333 TTCGCCTGCATGACGTCATT 60.673 50.000 28.04 11.20 33.61 2.57
143 144 0.673333 TTTCGCCTGCATGACGTCAT 60.673 50.000 25.18 25.18 36.96 3.06
144 145 1.291184 CTTTCGCCTGCATGACGTCA 61.291 55.000 22.48 22.48 0.00 4.35
145 146 1.291877 ACTTTCGCCTGCATGACGTC 61.292 55.000 9.11 9.11 0.00 4.34
146 147 0.037697 TACTTTCGCCTGCATGACGT 60.038 50.000 0.00 0.00 0.00 4.34
147 148 1.290203 ATACTTTCGCCTGCATGACG 58.710 50.000 0.00 0.00 0.00 4.35
148 149 3.248602 CCTTATACTTTCGCCTGCATGAC 59.751 47.826 0.00 0.00 0.00 3.06
159 160 6.045955 CAGTGAAGCTCCTCCTTATACTTTC 58.954 44.000 0.00 0.00 0.00 2.62
351 352 5.880887 GGGAATTAGTAACTTCTTCCACCAG 59.119 44.000 12.79 0.00 37.66 4.00
388 389 4.278419 GCAAGGGTATTGGCTCGATTTTAT 59.722 41.667 0.00 0.00 0.00 1.40
396 397 5.535753 AATATTTGCAAGGGTATTGGCTC 57.464 39.130 0.00 0.00 0.00 4.70
421 422 2.953466 ATCAGGTTGATGCATGCAAC 57.047 45.000 26.68 23.10 43.64 4.17
436 437 0.181114 TCCGGGGATCTGCAAATCAG 59.819 55.000 0.00 0.00 44.21 2.90
443 444 2.567615 AGTATATGTTCCGGGGATCTGC 59.432 50.000 0.00 0.00 0.00 4.26
446 447 3.368531 GCAGAGTATATGTTCCGGGGATC 60.369 52.174 0.00 0.00 0.00 3.36
447 448 2.567615 GCAGAGTATATGTTCCGGGGAT 59.432 50.000 0.00 0.00 0.00 3.85
553 555 9.155975 GAAGATGTGTACAGATGTGTCTTAATT 57.844 33.333 10.71 0.00 38.19 1.40
564 566 9.640963 GTTACAACTTAGAAGATGTGTACAGAT 57.359 33.333 4.97 4.97 41.36 2.90
576 578 9.543783 AGAACCTTACAAGTTACAACTTAGAAG 57.456 33.333 7.02 11.95 46.89 2.85
580 582 9.715121 CCATAGAACCTTACAAGTTACAACTTA 57.285 33.333 7.02 0.00 46.89 2.24
582 584 7.970102 TCCATAGAACCTTACAAGTTACAACT 58.030 34.615 0.00 0.00 42.04 3.16
583 585 8.092687 TCTCCATAGAACCTTACAAGTTACAAC 58.907 37.037 0.00 0.00 0.00 3.32
584 586 8.197592 TCTCCATAGAACCTTACAAGTTACAA 57.802 34.615 0.00 0.00 0.00 2.41
585 587 7.093465 CCTCTCCATAGAACCTTACAAGTTACA 60.093 40.741 0.00 0.00 0.00 2.41
586 588 7.123847 TCCTCTCCATAGAACCTTACAAGTTAC 59.876 40.741 0.00 0.00 0.00 2.50
590 592 5.659079 AGTCCTCTCCATAGAACCTTACAAG 59.341 44.000 0.00 0.00 0.00 3.16
608 610 0.449388 CAAATTGCAGCGGAGTCCTC 59.551 55.000 7.77 0.00 0.00 3.71
609 611 0.250901 ACAAATTGCAGCGGAGTCCT 60.251 50.000 7.77 0.00 0.00 3.85
613 615 1.213537 CCCACAAATTGCAGCGGAG 59.786 57.895 0.00 0.00 0.00 4.63
619 621 0.527113 CTCATCGCCCACAAATTGCA 59.473 50.000 0.00 0.00 0.00 4.08
635 637 2.168521 CGAACTAATGAGGCCCTTCTCA 59.831 50.000 0.00 0.00 46.32 3.27
644 646 6.860539 CACATGATAGAGTCGAACTAATGAGG 59.139 42.308 0.00 6.88 0.00 3.86
651 653 4.097135 CAGGACACATGATAGAGTCGAACT 59.903 45.833 0.00 0.00 31.05 3.01
655 657 3.629855 AGTCAGGACACATGATAGAGTCG 59.370 47.826 0.00 0.00 31.05 4.18
676 678 1.373497 GTGTGCCACGACTCAGGAG 60.373 63.158 0.00 0.00 0.00 3.69
686 688 1.141645 CAATTGCATGTGTGTGCCAC 58.858 50.000 0.00 0.00 44.43 5.01
687 689 0.751452 ACAATTGCATGTGTGTGCCA 59.249 45.000 5.05 0.00 44.43 4.92
688 690 1.868469 AACAATTGCATGTGTGTGCC 58.132 45.000 5.05 0.00 44.43 5.01
689 691 3.948196 AAAACAATTGCATGTGTGTGC 57.052 38.095 5.05 0.00 45.25 4.57
690 692 5.466432 TCAAAAACAATTGCATGTGTGTG 57.534 34.783 5.05 0.00 32.81 3.82
691 693 6.492007 TTTCAAAAACAATTGCATGTGTGT 57.508 29.167 5.05 0.00 32.81 3.72
692 694 7.325338 TGTTTTTCAAAAACAATTGCATGTGTG 59.675 29.630 23.29 0.00 37.22 3.82
693 695 7.365741 TGTTTTTCAAAAACAATTGCATGTGT 58.634 26.923 23.29 0.00 37.22 3.72
694 696 7.792383 TGTTTTTCAAAAACAATTGCATGTG 57.208 28.000 23.29 0.00 37.22 3.21
697 699 9.513727 GGTTATGTTTTTCAAAAACAATTGCAT 57.486 25.926 27.77 15.23 42.57 3.96
698 700 7.693951 CGGTTATGTTTTTCAAAAACAATTGCA 59.306 29.630 27.77 11.35 42.57 4.08
726 3806 0.548682 AGCAAGAGGGACACTGGGAT 60.549 55.000 0.00 0.00 0.00 3.85
731 3811 0.116143 AGGAGAGCAAGAGGGACACT 59.884 55.000 0.00 0.00 0.00 3.55
733 3813 0.115152 TGAGGAGAGCAAGAGGGACA 59.885 55.000 0.00 0.00 0.00 4.02
770 3850 7.120873 CAGTTTCCTCAGATCAGAACATCAAAT 59.879 37.037 0.00 0.00 0.00 2.32
774 3854 5.728471 TCAGTTTCCTCAGATCAGAACATC 58.272 41.667 0.00 0.00 0.00 3.06
775 3855 5.752036 TCAGTTTCCTCAGATCAGAACAT 57.248 39.130 0.00 0.00 0.00 2.71
776 3856 5.752036 ATCAGTTTCCTCAGATCAGAACA 57.248 39.130 0.00 0.00 0.00 3.18
777 3857 6.127196 ACCTATCAGTTTCCTCAGATCAGAAC 60.127 42.308 0.00 0.00 0.00 3.01
946 4245 0.392461 TGGAAACGCCCATAGTGAGC 60.392 55.000 0.00 0.00 34.97 4.26
1014 4328 4.809496 AAGCAGCGCCCTCCCATG 62.809 66.667 2.29 0.00 0.00 3.66
1049 4363 4.954118 TGCAGGGGGTCGTGGAGT 62.954 66.667 0.00 0.00 0.00 3.85
1092 4415 2.431771 CGCCATGACGACGAACCA 60.432 61.111 0.00 0.00 34.06 3.67
1273 4596 2.490903 GACATGACATTCCAAGCAGCTT 59.509 45.455 0.21 0.21 0.00 3.74
1274 4597 2.089980 GACATGACATTCCAAGCAGCT 58.910 47.619 0.00 0.00 0.00 4.24
1275 4598 2.089980 AGACATGACATTCCAAGCAGC 58.910 47.619 0.00 0.00 0.00 5.25
1362 4693 1.459539 CGCCCTCCCCATCTCCTTA 60.460 63.158 0.00 0.00 0.00 2.69
1496 4831 1.312815 AAAACAGAGGCAGAGCACAC 58.687 50.000 0.00 0.00 0.00 3.82
1543 4890 5.263185 CCACTTAACTGAAGAAACAACACG 58.737 41.667 0.00 0.00 38.65 4.49
1639 4999 4.142609 TCCACAGGTGAAGATGCTAATC 57.857 45.455 0.00 0.00 0.00 1.75
1643 5003 2.040813 ACATTCCACAGGTGAAGATGCT 59.959 45.455 0.00 0.00 0.00 3.79
1653 5016 3.678289 TGATGAGTCAACATTCCACAGG 58.322 45.455 0.00 0.00 0.00 4.00
1668 5032 3.181503 CCGAAAAGGAAGCACATGATGAG 60.182 47.826 0.00 0.00 45.00 2.90
1674 5038 1.247567 CACCCGAAAAGGAAGCACAT 58.752 50.000 0.00 0.00 45.00 3.21
1675 5039 1.452145 GCACCCGAAAAGGAAGCACA 61.452 55.000 0.00 0.00 45.00 4.57
1831 5204 1.311859 TTCTGGATGAATGCGGATGC 58.688 50.000 0.00 0.00 43.20 3.91
1895 5276 4.568956 TCTGAAATGCGTTCTTGAGATGA 58.431 39.130 0.00 0.00 37.13 2.92
1896 5277 4.934075 TCTGAAATGCGTTCTTGAGATG 57.066 40.909 0.00 0.00 37.13 2.90
1898 5279 4.024048 GGTTTCTGAAATGCGTTCTTGAGA 60.024 41.667 6.06 0.00 37.13 3.27
1907 5288 0.168128 GTCCCGGTTTCTGAAATGCG 59.832 55.000 6.06 0.00 0.00 4.73
1922 5303 0.179111 TGAAGTGCGATCATCGTCCC 60.179 55.000 9.23 0.00 42.81 4.46
1924 5305 2.194800 TCTGAAGTGCGATCATCGTC 57.805 50.000 9.23 1.64 42.81 4.20
1933 5314 6.706055 TGAATTTACTAGTTCTGAAGTGCG 57.294 37.500 0.00 2.09 0.00 5.34
2022 5427 9.679661 TCCACTATGTTCTGCAATCTAATTTAA 57.320 29.630 0.00 0.00 0.00 1.52
2027 5432 5.528690 GCATCCACTATGTTCTGCAATCTAA 59.471 40.000 0.00 0.00 37.93 2.10
2030 5435 3.881688 AGCATCCACTATGTTCTGCAATC 59.118 43.478 0.00 0.00 37.93 2.67
2059 5469 8.964476 TCCATCTAAGATTCATTAACCTGAAC 57.036 34.615 0.00 0.00 37.93 3.18
2096 5506 4.767578 AGTGCTGATGGAGATGTTACAT 57.232 40.909 0.00 0.00 0.00 2.29
2288 5706 8.146479 TCTGATCATGATGGATTTTAGAAACG 57.854 34.615 14.30 0.00 0.00 3.60
2300 5718 9.626045 CATGTTTGAATATTCTGATCATGATGG 57.374 33.333 14.30 5.94 34.14 3.51
2303 5721 8.228035 TGCATGTTTGAATATTCTGATCATGA 57.772 30.769 26.54 0.00 34.14 3.07
2473 5901 2.435372 AACTTGTTGGGAGTGCTTCA 57.565 45.000 0.00 0.00 0.00 3.02
2520 5948 5.747197 GTGATGCAAATGATTGGAAGACATC 59.253 40.000 0.00 0.00 40.47 3.06
2521 5949 5.186215 TGTGATGCAAATGATTGGAAGACAT 59.814 36.000 0.00 0.00 40.47 3.06
2522 5950 4.523558 TGTGATGCAAATGATTGGAAGACA 59.476 37.500 0.00 0.00 40.47 3.41
2523 5951 5.063180 TGTGATGCAAATGATTGGAAGAC 57.937 39.130 0.00 0.00 40.47 3.01
2524 5952 5.011586 TCTGTGATGCAAATGATTGGAAGA 58.988 37.500 0.00 0.00 40.47 2.87
2525 5953 5.319140 TCTGTGATGCAAATGATTGGAAG 57.681 39.130 0.00 0.00 40.47 3.46
2526 5954 5.010820 TGTTCTGTGATGCAAATGATTGGAA 59.989 36.000 0.00 0.00 40.47 3.53
2527 5955 4.523558 TGTTCTGTGATGCAAATGATTGGA 59.476 37.500 0.00 0.00 41.38 3.53
2528 5956 4.811908 TGTTCTGTGATGCAAATGATTGG 58.188 39.130 0.00 0.00 37.02 3.16
2529 5957 6.961359 AATGTTCTGTGATGCAAATGATTG 57.039 33.333 0.00 0.00 39.65 2.67
2530 5958 7.093640 ACCTAATGTTCTGTGATGCAAATGATT 60.094 33.333 0.00 0.00 0.00 2.57
2531 5959 6.379133 ACCTAATGTTCTGTGATGCAAATGAT 59.621 34.615 0.00 0.00 0.00 2.45
2532 5960 5.711506 ACCTAATGTTCTGTGATGCAAATGA 59.288 36.000 0.00 0.00 0.00 2.57
2533 5961 5.803461 CACCTAATGTTCTGTGATGCAAATG 59.197 40.000 0.00 0.00 0.00 2.32
2534 5962 5.622914 GCACCTAATGTTCTGTGATGCAAAT 60.623 40.000 0.00 0.00 0.00 2.32
2535 5963 4.321156 GCACCTAATGTTCTGTGATGCAAA 60.321 41.667 0.00 0.00 0.00 3.68
2536 5964 3.191162 GCACCTAATGTTCTGTGATGCAA 59.809 43.478 0.00 0.00 0.00 4.08
2537 5965 2.749076 GCACCTAATGTTCTGTGATGCA 59.251 45.455 0.00 0.00 0.00 3.96
2538 5966 2.223112 CGCACCTAATGTTCTGTGATGC 60.223 50.000 0.00 0.00 0.00 3.91
2539 5967 2.352651 CCGCACCTAATGTTCTGTGATG 59.647 50.000 0.00 0.00 0.00 3.07
2540 5968 2.632377 CCGCACCTAATGTTCTGTGAT 58.368 47.619 0.00 0.00 0.00 3.06
2541 5969 1.943968 GCCGCACCTAATGTTCTGTGA 60.944 52.381 0.00 0.00 0.00 3.58
2542 5970 0.447801 GCCGCACCTAATGTTCTGTG 59.552 55.000 0.00 0.00 0.00 3.66
2543 5971 0.324943 AGCCGCACCTAATGTTCTGT 59.675 50.000 0.00 0.00 0.00 3.41
2544 5972 2.309528 TAGCCGCACCTAATGTTCTG 57.690 50.000 0.00 0.00 0.00 3.02
2545 5973 3.560636 ATTAGCCGCACCTAATGTTCT 57.439 42.857 5.36 0.00 36.82 3.01
2546 5974 5.941948 AATATTAGCCGCACCTAATGTTC 57.058 39.130 13.35 0.00 35.52 3.18
2547 5975 6.709018 AAAATATTAGCCGCACCTAATGTT 57.291 33.333 13.35 10.88 39.35 2.71
2548 5976 6.206048 GGTAAAATATTAGCCGCACCTAATGT 59.794 38.462 13.35 6.49 38.23 2.71
2549 5977 6.608610 GGTAAAATATTAGCCGCACCTAATG 58.391 40.000 13.35 0.00 38.23 1.90
2550 5978 5.410439 CGGTAAAATATTAGCCGCACCTAAT 59.590 40.000 10.79 9.86 40.24 1.73
2551 5979 4.751098 CGGTAAAATATTAGCCGCACCTAA 59.249 41.667 10.79 0.00 36.40 2.69
2552 5980 4.309099 CGGTAAAATATTAGCCGCACCTA 58.691 43.478 10.79 0.00 36.40 3.08
2553 5981 3.135994 CGGTAAAATATTAGCCGCACCT 58.864 45.455 10.79 0.00 36.40 4.00
2554 5982 3.531262 CGGTAAAATATTAGCCGCACC 57.469 47.619 10.79 2.64 36.40 5.01
2559 5987 3.316868 TGCAAGGCGGTAAAATATTAGCC 59.683 43.478 9.42 9.42 44.45 3.93
2560 5988 4.561735 TGCAAGGCGGTAAAATATTAGC 57.438 40.909 0.00 0.00 36.41 3.09
2561 5989 6.636850 GTGATTGCAAGGCGGTAAAATATTAG 59.363 38.462 4.94 0.00 0.00 1.73
2562 5990 6.095580 TGTGATTGCAAGGCGGTAAAATATTA 59.904 34.615 4.94 0.00 0.00 0.98
2563 5991 5.105554 TGTGATTGCAAGGCGGTAAAATATT 60.106 36.000 4.94 0.00 0.00 1.28
2564 5992 4.400884 TGTGATTGCAAGGCGGTAAAATAT 59.599 37.500 4.94 0.00 0.00 1.28
2565 5993 3.759086 TGTGATTGCAAGGCGGTAAAATA 59.241 39.130 4.94 0.00 0.00 1.40
2566 5994 2.560542 TGTGATTGCAAGGCGGTAAAAT 59.439 40.909 4.94 0.00 0.00 1.82
2567 5995 1.957177 TGTGATTGCAAGGCGGTAAAA 59.043 42.857 4.94 0.00 0.00 1.52
2568 5996 1.610363 TGTGATTGCAAGGCGGTAAA 58.390 45.000 4.94 0.00 0.00 2.01
2569 5997 1.539388 CTTGTGATTGCAAGGCGGTAA 59.461 47.619 4.94 0.00 41.41 2.85
2570 5998 1.164411 CTTGTGATTGCAAGGCGGTA 58.836 50.000 4.94 0.00 41.41 4.02
2571 5999 1.959085 CTTGTGATTGCAAGGCGGT 59.041 52.632 4.94 0.00 41.41 5.68
2572 6000 1.444895 GCTTGTGATTGCAAGGCGG 60.445 57.895 4.94 0.00 44.29 6.13
2573 6001 0.318869 TTGCTTGTGATTGCAAGGCG 60.319 50.000 4.94 0.00 44.29 5.52
2574 6002 3.591979 TTGCTTGTGATTGCAAGGC 57.408 47.368 4.94 0.00 44.29 4.35
2577 6005 1.614903 CCCTCTTGCTTGTGATTGCAA 59.385 47.619 0.00 0.00 45.40 4.08
2578 6006 1.250328 CCCTCTTGCTTGTGATTGCA 58.750 50.000 0.00 0.00 37.42 4.08
2579 6007 0.529378 CCCCTCTTGCTTGTGATTGC 59.471 55.000 0.00 0.00 0.00 3.56
2580 6008 2.205022 TCCCCTCTTGCTTGTGATTG 57.795 50.000 0.00 0.00 0.00 2.67
2581 6009 2.978156 TTCCCCTCTTGCTTGTGATT 57.022 45.000 0.00 0.00 0.00 2.57
2582 6010 2.978156 TTTCCCCTCTTGCTTGTGAT 57.022 45.000 0.00 0.00 0.00 3.06
2583 6011 2.586425 CTTTTCCCCTCTTGCTTGTGA 58.414 47.619 0.00 0.00 0.00 3.58
2584 6012 1.000171 GCTTTTCCCCTCTTGCTTGTG 60.000 52.381 0.00 0.00 0.00 3.33
2585 6013 1.332195 GCTTTTCCCCTCTTGCTTGT 58.668 50.000 0.00 0.00 0.00 3.16
2586 6014 0.605083 GGCTTTTCCCCTCTTGCTTG 59.395 55.000 0.00 0.00 0.00 4.01
2587 6015 3.057749 GGCTTTTCCCCTCTTGCTT 57.942 52.632 0.00 0.00 0.00 3.91
2588 6016 4.852388 GGCTTTTCCCCTCTTGCT 57.148 55.556 0.00 0.00 0.00 3.91
2597 6025 1.411246 ACGTTTTCCTTGGGCTTTTCC 59.589 47.619 0.00 0.00 0.00 3.13
2598 6026 2.882927 ACGTTTTCCTTGGGCTTTTC 57.117 45.000 0.00 0.00 0.00 2.29
2599 6027 3.620427 AAACGTTTTCCTTGGGCTTTT 57.380 38.095 7.96 0.00 0.00 2.27
2600 6028 3.447944 TGTAAACGTTTTCCTTGGGCTTT 59.552 39.130 20.19 0.00 0.00 3.51
2601 6029 3.025262 TGTAAACGTTTTCCTTGGGCTT 58.975 40.909 20.19 0.00 0.00 4.35
2602 6030 2.621526 CTGTAAACGTTTTCCTTGGGCT 59.378 45.455 20.19 0.00 0.00 5.19
2606 6034 4.575645 TGGGTACTGTAAACGTTTTCCTTG 59.424 41.667 20.19 9.38 0.00 3.61
2700 6143 1.364626 GCGATGGCAAGTCCTGTCAG 61.365 60.000 0.00 0.00 44.63 3.51
2808 6251 8.934507 AAGGAAAATTTTCGAATGTTTGTGTA 57.065 26.923 21.53 0.00 38.06 2.90
2838 6282 9.400638 TGCCAATGTTACTTCTAAAAATTTACG 57.599 29.630 0.00 0.00 0.00 3.18
2841 6285 8.646900 TCCTGCCAATGTTACTTCTAAAAATTT 58.353 29.630 0.00 0.00 0.00 1.82
2853 6297 1.470098 CAGTGCTCCTGCCAATGTTAC 59.530 52.381 0.00 0.00 38.71 2.50
2866 6310 6.763135 TGGAATAAAGTGACATATCAGTGCTC 59.237 38.462 0.00 0.00 38.58 4.26
2887 6331 9.823647 TGCAGTTTTCAAGTTTATAATTTGGAA 57.176 25.926 9.21 5.55 0.00 3.53
2897 6380 9.979578 ACATATCATTTGCAGTTTTCAAGTTTA 57.020 25.926 0.00 0.00 0.00 2.01
2898 6381 8.891671 ACATATCATTTGCAGTTTTCAAGTTT 57.108 26.923 0.00 0.00 0.00 2.66
2934 6419 2.623416 GCCTTTTCAACACTAGCCAGTT 59.377 45.455 0.00 0.00 30.46 3.16
2956 6442 3.088789 TCTCCAAGTACCTGACCTCTC 57.911 52.381 0.00 0.00 0.00 3.20
3043 6529 1.951923 TATGTACCTCTCCGGGGCCA 61.952 60.000 4.39 0.00 36.97 5.36
3060 6546 9.474313 TCAGTCAAAAGTATTATTTGGGCTTAT 57.526 29.630 0.00 0.00 38.12 1.73
3104 6592 8.212312 TGTAAACCTGAAAAGAATGGTACTGTA 58.788 33.333 0.00 0.00 31.82 2.74
3116 6604 5.163561 TGCTTCAAGGTGTAAACCTGAAAAG 60.164 40.000 5.00 10.60 40.59 2.27
3177 6670 3.016736 CACCTTCCGTATTGCCAGAATT 58.983 45.455 0.00 0.00 0.00 2.17
3243 6736 8.675705 TTTCAGTGAATAAGACATTGTCTCAA 57.324 30.769 19.23 11.31 42.59 3.02
3334 6840 6.522946 AGTCCTCATGATATGTGAATGTGAG 58.477 40.000 0.00 0.00 33.29 3.51
3553 7069 4.405358 AGCTTGCTTATTGTCTAGAGCTCT 59.595 41.667 22.17 22.17 34.39 4.09
3587 7103 2.485479 GCCACCAGGTATACACATGAGG 60.485 54.545 5.01 7.01 38.76 3.86
3722 7239 4.337274 AGACGAAACCAAGTTAAAAGGGTG 59.663 41.667 0.00 0.00 33.00 4.61
3727 7244 7.550196 AGAGTTGTAGACGAAACCAAGTTAAAA 59.450 33.333 0.00 0.00 0.00 1.52
3838 7365 6.301486 TGATGCTGCTATGAATATTTGGACT 58.699 36.000 0.00 0.00 0.00 3.85
3841 7368 6.741109 TGTTGATGCTGCTATGAATATTTGG 58.259 36.000 0.00 0.00 0.00 3.28
3931 7463 0.321741 TTTCTTTGGCATCGGCGGTA 60.322 50.000 7.21 0.00 42.47 4.02
4078 7621 1.484653 TGCTATGATTGGCGTGTACCT 59.515 47.619 0.00 0.00 30.65 3.08
4130 7702 6.494842 GTCAGTTTGACACTTTAATCTGCAA 58.505 36.000 4.42 0.00 46.22 4.08
4189 7761 7.957002 TGTTGGCTATGGTTTCATCTTTTAAA 58.043 30.769 0.00 0.00 34.96 1.52
4193 7767 5.324409 TCTGTTGGCTATGGTTTCATCTTT 58.676 37.500 0.00 0.00 34.96 2.52
4260 7834 4.021016 GTGGACAGTCTTTACATGAGGTCT 60.021 45.833 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.