Multiple sequence alignment - TraesCS5A01G524300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G524300 chr5A 100.000 4269 0 0 1 4269 684944615 684940347 0.000000e+00 7884.0
1 TraesCS5A01G524300 chr5A 89.180 878 76 12 2479 3347 661215103 661214236 0.000000e+00 1077.0
2 TraesCS5A01G524300 chr5A 89.495 495 39 11 1820 2309 661215651 661215165 7.850000e-172 614.0
3 TraesCS5A01G524300 chr5A 89.326 356 38 0 2764 3119 684759984 684760339 8.420000e-122 448.0
4 TraesCS5A01G524300 chr5A 94.737 228 12 0 3112 3339 684938654 684938881 5.250000e-94 355.0
5 TraesCS5A01G524300 chr5A 83.895 267 22 13 1446 1700 661215919 661215662 7.140000e-58 235.0
6 TraesCS5A01G524300 chr5A 81.230 309 37 15 2476 2782 684758041 684758330 3.320000e-56 230.0
7 TraesCS5A01G524300 chr5A 90.062 161 15 1 2153 2313 684757823 684757982 1.560000e-49 207.0
8 TraesCS5A01G524300 chr5A 92.857 84 6 0 1229 1312 684757422 684757505 5.800000e-24 122.0
9 TraesCS5A01G524300 chr5A 92.157 51 3 1 1702 1751 394748037 394748087 2.130000e-08 71.3
10 TraesCS5A01G524300 chr4B 90.741 1782 112 20 2479 4237 646188133 646186382 0.000000e+00 2327.0
11 TraesCS5A01G524300 chr4B 91.104 652 42 5 3630 4265 646161401 646162052 0.000000e+00 869.0
12 TraesCS5A01G524300 chr4B 88.777 597 37 10 781 1369 646189668 646189094 0.000000e+00 704.0
13 TraesCS5A01G524300 chr4B 92.488 426 24 4 1892 2309 646188620 646188195 1.700000e-168 603.0
14 TraesCS5A01G524300 chr4B 87.261 471 47 7 3808 4265 646184212 646183742 3.780000e-145 525.0
15 TraesCS5A01G524300 chr4B 91.093 247 20 1 2944 3188 646178591 646178837 2.460000e-87 333.0
16 TraesCS5A01G524300 chr4B 91.787 207 15 2 1 207 646190487 646190283 1.940000e-73 287.0
17 TraesCS5A01G524300 chr4B 96.667 150 4 1 2333 2482 588430962 588430814 9.170000e-62 248.0
18 TraesCS5A01G524300 chr4B 92.025 163 8 2 3185 3343 646182389 646182550 1.540000e-54 224.0
19 TraesCS5A01G524300 chr4B 84.615 221 13 5 592 808 646189875 646189672 2.600000e-47 200.0
20 TraesCS5A01G524300 chr4B 90.000 140 11 3 230 367 646190196 646190058 1.220000e-40 178.0
21 TraesCS5A01G524300 chr4B 90.789 76 7 0 789 864 468391871 468391796 7.550000e-18 102.0
22 TraesCS5A01G524300 chr4B 97.561 41 0 1 1705 1744 405532058 405532018 7.660000e-08 69.4
23 TraesCS5A01G524300 chr4D 93.194 764 44 6 2583 3341 502067355 502066595 0.000000e+00 1116.0
24 TraesCS5A01G524300 chr4D 91.611 751 55 6 2594 3337 502063193 502063942 0.000000e+00 1031.0
25 TraesCS5A01G524300 chr4D 88.000 900 61 24 543 1411 502069227 502068344 0.000000e+00 1020.0
26 TraesCS5A01G524300 chr4D 94.280 507 27 1 1805 2309 502067993 502067487 0.000000e+00 774.0
27 TraesCS5A01G524300 chr4D 94.631 298 8 3 1411 1700 502068289 502067992 5.030000e-124 455.0
28 TraesCS5A01G524300 chr4D 83.478 345 33 16 28 367 502069699 502069374 2.500000e-77 300.0
29 TraesCS5A01G524300 chr4D 90.833 120 8 2 689 808 502069106 502068990 1.590000e-34 158.0
30 TraesCS5A01G524300 chr4D 96.610 59 2 0 1750 1808 502068082 502068024 9.770000e-17 99.0
31 TraesCS5A01G524300 chrUn 91.093 247 20 1 2944 3188 391312803 391312557 2.460000e-87 333.0
32 TraesCS5A01G524300 chrUn 94.937 158 5 3 2333 2490 395339818 395339972 1.190000e-60 244.0
33 TraesCS5A01G524300 chr5B 93.750 192 11 1 360 550 596287573 596287764 1.940000e-73 287.0
34 TraesCS5A01G524300 chr5B 96.667 150 4 1 2333 2482 264932395 264932543 9.170000e-62 248.0
35 TraesCS5A01G524300 chr5B 84.247 146 21 2 59 204 250601926 250601783 1.600000e-29 141.0
36 TraesCS5A01G524300 chr2B 94.180 189 10 1 363 550 94326699 94326887 1.940000e-73 287.0
37 TraesCS5A01G524300 chr2B 94.054 185 10 1 366 549 247919836 247919652 3.250000e-71 279.0
38 TraesCS5A01G524300 chr2B 93.122 189 12 1 362 549 367585409 367585597 4.200000e-70 276.0
39 TraesCS5A01G524300 chr2B 93.514 185 11 1 366 549 728559551 728559735 1.510000e-69 274.0
40 TraesCS5A01G524300 chr2B 82.659 173 28 2 31 203 87531683 87531513 7.390000e-33 152.0
41 TraesCS5A01G524300 chr2B 87.356 87 9 2 714 800 431267149 431267065 9.770000e-17 99.0
42 TraesCS5A01G524300 chr2B 86.747 83 10 1 710 792 431265511 431265430 1.630000e-14 91.6
43 TraesCS5A01G524300 chr2B 95.349 43 2 0 1702 1744 514214583 514214625 7.660000e-08 69.4
44 TraesCS5A01G524300 chr2B 95.238 42 1 1 1702 1743 396460306 396460346 9.910000e-07 65.8
45 TraesCS5A01G524300 chr7A 93.158 190 12 1 361 549 646560451 646560262 1.170000e-70 278.0
46 TraesCS5A01G524300 chr7A 93.048 187 12 1 364 549 275561457 275561271 5.440000e-69 272.0
47 TraesCS5A01G524300 chr5D 93.989 183 10 1 365 546 87807927 87808109 4.200000e-70 276.0
48 TraesCS5A01G524300 chr5D 93.548 186 11 1 366 550 89075226 89075041 4.200000e-70 276.0
49 TraesCS5A01G524300 chr5D 91.379 174 10 5 2333 2505 176095767 176095936 2.570000e-57 233.0
50 TraesCS5A01G524300 chr4A 96.078 153 5 1 2333 2485 317089766 317089615 9.170000e-62 248.0
51 TraesCS5A01G524300 chr4A 90.449 178 11 5 2333 2509 31161838 31162010 3.320000e-56 230.0
52 TraesCS5A01G524300 chr3A 96.667 150 4 1 2333 2482 642038897 642038749 9.170000e-62 248.0
53 TraesCS5A01G524300 chr3A 100.000 40 0 0 1702 1741 697785748 697785787 1.650000e-09 75.0
54 TraesCS5A01G524300 chr1B 96.644 149 4 1 2333 2481 110622855 110623002 3.300000e-61 246.0
55 TraesCS5A01G524300 chr1B 90.909 176 11 5 2333 2508 630834081 630834251 9.230000e-57 231.0
56 TraesCS5A01G524300 chr6D 90.132 152 12 3 781 932 390715470 390715322 1.210000e-45 195.0
57 TraesCS5A01G524300 chr6D 97.500 40 1 0 1706 1745 121809864 121809825 7.660000e-08 69.4
58 TraesCS5A01G524300 chr3D 93.976 83 4 1 783 865 255228048 255228129 1.610000e-24 124.0
59 TraesCS5A01G524300 chr3D 83.471 121 14 5 710 829 255227949 255228064 1.620000e-19 108.0
60 TraesCS5A01G524300 chr1D 100.000 40 0 0 1705 1744 75817812 75817773 1.650000e-09 75.0
61 TraesCS5A01G524300 chr7B 97.561 41 0 1 1705 1744 139983433 139983393 7.660000e-08 69.4
62 TraesCS5A01G524300 chr6A 95.349 43 0 2 1705 1746 447173255 447173296 2.750000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G524300 chr5A 684940347 684944615 4268 True 7884.000000 7884 100.000000 1 4269 1 chr5A.!!$R1 4268
1 TraesCS5A01G524300 chr5A 661214236 661215919 1683 True 642.000000 1077 87.523333 1446 3347 3 chr5A.!!$R2 1901
2 TraesCS5A01G524300 chr5A 684757422 684760339 2917 False 251.750000 448 88.368750 1229 3119 4 chr5A.!!$F3 1890
3 TraesCS5A01G524300 chr4B 646161401 646162052 651 False 869.000000 869 91.104000 3630 4265 1 chr4B.!!$F1 635
4 TraesCS5A01G524300 chr4B 646183742 646190487 6745 True 689.142857 2327 89.381286 1 4265 7 chr4B.!!$R4 4264
5 TraesCS5A01G524300 chr4B 646178591 646182550 3959 False 278.500000 333 91.559000 2944 3343 2 chr4B.!!$F2 399
6 TraesCS5A01G524300 chr4D 502063193 502063942 749 False 1031.000000 1031 91.611000 2594 3337 1 chr4D.!!$F1 743
7 TraesCS5A01G524300 chr4D 502066595 502069699 3104 True 560.285714 1116 91.575143 28 3341 7 chr4D.!!$R1 3313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
582 651 0.105246 TTGGGCCCACCTGTCAAAAT 60.105 50.0 28.7 0.0 41.11 1.82 F
1786 2057 0.110295 TGCCAACAGTATGCAGTGGT 59.890 50.0 0.0 0.0 42.53 4.16 F
2413 2716 0.034767 TGCAAGAGGCTGATTCCAGG 60.035 55.0 0.0 0.0 45.15 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2394 2697 0.034767 CCTGGAATCAGCCTCTTGCA 60.035 55.0 0.00 0.0 44.83 4.08 R
2636 2953 0.098905 CATCAGCAGCAGCACACATC 59.901 55.0 3.17 0.0 45.49 3.06 R
4037 9608 0.039035 GGGTTGTTGCATGACCCCTA 59.961 55.0 17.59 0.0 45.94 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 8.831550 ACACAGATCTAGTTGTTTTCTCTTTTC 58.168 33.333 0.00 0.00 0.00 2.29
185 186 8.830580 CACAGATCTAGTTGTTTTCTCTTTTCA 58.169 33.333 0.00 0.00 0.00 2.69
194 195 7.333672 AGTTGTTTTCTCTTTTCACGAGTAGTT 59.666 33.333 0.00 0.00 0.00 2.24
195 196 7.230466 TGTTTTCTCTTTTCACGAGTAGTTC 57.770 36.000 0.00 0.00 0.00 3.01
207 208 2.264813 GAGTAGTTCGCATGCCGTTTA 58.735 47.619 13.15 0.00 38.35 2.01
208 209 2.669434 GAGTAGTTCGCATGCCGTTTAA 59.331 45.455 13.15 0.00 38.35 1.52
209 210 3.267483 AGTAGTTCGCATGCCGTTTAAT 58.733 40.909 13.15 0.00 38.35 1.40
210 211 3.687698 AGTAGTTCGCATGCCGTTTAATT 59.312 39.130 13.15 0.00 38.35 1.40
211 212 4.871557 AGTAGTTCGCATGCCGTTTAATTA 59.128 37.500 13.15 0.00 38.35 1.40
215 216 5.571357 AGTTCGCATGCCGTTTAATTAAAAG 59.429 36.000 13.15 13.55 38.35 2.27
216 217 4.416620 TCGCATGCCGTTTAATTAAAAGG 58.583 39.130 28.43 28.43 44.31 3.11
225 226 6.210078 CCGTTTAATTAAAAGGCAACACTCA 58.790 36.000 23.97 0.00 37.84 3.41
226 227 6.866248 CCGTTTAATTAAAAGGCAACACTCAT 59.134 34.615 23.97 0.00 37.84 2.90
227 228 7.148820 CCGTTTAATTAAAAGGCAACACTCATG 60.149 37.037 23.97 3.10 37.84 3.07
228 229 7.381139 CGTTTAATTAAAAGGCAACACTCATGT 59.619 33.333 12.14 0.00 42.46 3.21
257 322 7.769272 TTTCTCGAACAAAATCTTGCAAATT 57.231 28.000 0.00 0.89 35.84 1.82
264 329 7.691463 CGAACAAAATCTTGCAAATTGTGAAAA 59.309 29.630 21.36 0.00 35.84 2.29
312 379 6.126911 GGGGAAGTGAAATATCTTCTGAGAGT 60.127 42.308 0.00 0.00 39.67 3.24
316 383 6.705302 AGTGAAATATCTTCTGAGAGTGCAA 58.295 36.000 0.00 0.00 34.85 4.08
380 449 6.642707 AGAAGATATACTCCCTCGTTTCAG 57.357 41.667 0.00 0.00 0.00 3.02
383 452 7.507616 AGAAGATATACTCCCTCGTTTCAGAAT 59.492 37.037 0.00 0.00 0.00 2.40
384 453 6.987386 AGATATACTCCCTCGTTTCAGAATG 58.013 40.000 0.00 0.00 37.54 2.67
385 454 6.551601 AGATATACTCCCTCGTTTCAGAATGT 59.448 38.462 0.00 0.00 37.40 2.71
387 456 4.884668 ACTCCCTCGTTTCAGAATGTAA 57.115 40.909 0.00 0.00 37.40 2.41
388 457 4.822026 ACTCCCTCGTTTCAGAATGTAAG 58.178 43.478 0.00 0.00 37.40 2.34
389 458 4.184629 CTCCCTCGTTTCAGAATGTAAGG 58.815 47.826 0.00 0.00 37.40 2.69
390 459 3.581332 TCCCTCGTTTCAGAATGTAAGGT 59.419 43.478 0.00 0.00 37.40 3.50
391 460 3.684788 CCCTCGTTTCAGAATGTAAGGTG 59.315 47.826 0.00 0.00 37.40 4.00
395 464 6.594159 CCTCGTTTCAGAATGTAAGGTGTATT 59.406 38.462 0.00 0.00 37.40 1.89
396 465 7.359262 TCGTTTCAGAATGTAAGGTGTATTG 57.641 36.000 0.00 0.00 37.40 1.90
397 466 7.156000 TCGTTTCAGAATGTAAGGTGTATTGA 58.844 34.615 0.00 0.00 37.40 2.57
398 467 7.822334 TCGTTTCAGAATGTAAGGTGTATTGAT 59.178 33.333 0.00 0.00 37.40 2.57
399 468 8.450964 CGTTTCAGAATGTAAGGTGTATTGATT 58.549 33.333 0.00 0.00 37.40 2.57
403 472 8.664798 TCAGAATGTAAGGTGTATTGATTTTCG 58.335 33.333 0.00 0.00 37.40 3.46
404 473 8.450964 CAGAATGTAAGGTGTATTGATTTTCGT 58.549 33.333 0.00 0.00 0.00 3.85
405 474 8.450964 AGAATGTAAGGTGTATTGATTTTCGTG 58.549 33.333 0.00 0.00 0.00 4.35
406 475 5.933790 TGTAAGGTGTATTGATTTTCGTGC 58.066 37.500 0.00 0.00 0.00 5.34
409 478 5.046910 AGGTGTATTGATTTTCGTGCAAG 57.953 39.130 0.00 0.00 0.00 4.01
410 479 4.518970 AGGTGTATTGATTTTCGTGCAAGT 59.481 37.500 0.00 0.00 0.00 3.16
412 481 5.448438 GTGTATTGATTTTCGTGCAAGTCA 58.552 37.500 0.00 0.00 0.00 3.41
413 482 5.912396 GTGTATTGATTTTCGTGCAAGTCAA 59.088 36.000 6.01 6.01 0.00 3.18
414 483 5.912396 TGTATTGATTTTCGTGCAAGTCAAC 59.088 36.000 5.74 0.00 0.00 3.18
415 484 3.347958 TGATTTTCGTGCAAGTCAACC 57.652 42.857 0.00 0.00 0.00 3.77
416 485 2.685388 TGATTTTCGTGCAAGTCAACCA 59.315 40.909 0.00 0.00 0.00 3.67
417 486 2.842208 TTTTCGTGCAAGTCAACCAG 57.158 45.000 0.00 0.00 0.00 4.00
419 488 1.745232 TTCGTGCAAGTCAACCAGTT 58.255 45.000 0.00 0.00 0.00 3.16
420 489 1.013596 TCGTGCAAGTCAACCAGTTG 58.986 50.000 4.09 4.09 41.71 3.16
421 490 1.013596 CGTGCAAGTCAACCAGTTGA 58.986 50.000 9.12 9.12 46.27 3.18
432 501 4.082845 TCAACCAGTTGAAAGTTTGACCA 58.917 39.130 10.71 0.00 45.56 4.02
434 503 4.450082 ACCAGTTGAAAGTTTGACCAAC 57.550 40.909 9.52 9.52 39.17 3.77
435 504 3.829601 ACCAGTTGAAAGTTTGACCAACA 59.170 39.130 16.54 0.00 40.77 3.33
436 505 4.466015 ACCAGTTGAAAGTTTGACCAACAT 59.534 37.500 16.54 4.06 40.77 2.71
437 506 5.046663 ACCAGTTGAAAGTTTGACCAACATT 60.047 36.000 16.54 2.88 40.77 2.71
438 507 6.153680 ACCAGTTGAAAGTTTGACCAACATTA 59.846 34.615 16.54 0.00 40.77 1.90
439 508 7.147742 ACCAGTTGAAAGTTTGACCAACATTAT 60.148 33.333 16.54 0.00 40.77 1.28
440 509 8.356657 CCAGTTGAAAGTTTGACCAACATTATA 58.643 33.333 16.54 0.00 40.77 0.98
442 511 9.349713 AGTTGAAAGTTTGACCAACATTATAGA 57.650 29.630 16.54 0.00 40.77 1.98
443 512 9.959749 GTTGAAAGTTTGACCAACATTATAGAA 57.040 29.630 11.71 0.00 38.84 2.10
444 513 9.959749 TTGAAAGTTTGACCAACATTATAGAAC 57.040 29.630 0.00 0.00 37.93 3.01
446 515 9.959749 GAAAGTTTGACCAACATTATAGAACAA 57.040 29.630 0.00 0.00 37.93 2.83
466 535 9.846248 AGAACAAAATAGAAACATCTGCAATAC 57.154 29.630 0.00 0.00 0.00 1.89
468 537 8.353423 ACAAAATAGAAACATCTGCAATACCT 57.647 30.769 0.00 0.00 0.00 3.08
469 538 9.461312 ACAAAATAGAAACATCTGCAATACCTA 57.539 29.630 0.00 0.00 0.00 3.08
502 571 7.969536 AATATTGAACTACCTTCCATGATCG 57.030 36.000 0.00 0.00 0.00 3.69
503 572 5.614324 ATTGAACTACCTTCCATGATCGA 57.386 39.130 0.00 0.00 0.00 3.59
505 574 5.201713 TGAACTACCTTCCATGATCGATC 57.798 43.478 18.72 18.72 0.00 3.69
506 575 4.649218 TGAACTACCTTCCATGATCGATCA 59.351 41.667 29.09 29.09 41.70 2.92
507 576 5.128663 TGAACTACCTTCCATGATCGATCAA 59.871 40.000 30.41 13.03 40.69 2.57
508 577 5.614324 ACTACCTTCCATGATCGATCAAA 57.386 39.130 30.41 19.28 40.69 2.69
510 579 5.994054 ACTACCTTCCATGATCGATCAAATG 59.006 40.000 30.41 23.65 40.69 2.32
511 580 5.039920 ACCTTCCATGATCGATCAAATGA 57.960 39.130 30.41 22.35 40.69 2.57
513 582 6.772605 ACCTTCCATGATCGATCAAATGATA 58.227 36.000 30.41 14.13 40.69 2.15
514 583 7.400439 ACCTTCCATGATCGATCAAATGATAT 58.600 34.615 30.41 10.76 40.69 1.63
515 584 8.542926 ACCTTCCATGATCGATCAAATGATATA 58.457 33.333 30.41 11.92 40.69 0.86
516 585 9.387257 CCTTCCATGATCGATCAAATGATATAA 57.613 33.333 30.41 15.31 40.69 0.98
575 644 2.672996 CGTCTTTGGGCCCACCTG 60.673 66.667 28.70 17.80 41.11 4.00
576 645 2.520968 GTCTTTGGGCCCACCTGT 59.479 61.111 28.70 0.00 41.11 4.00
577 646 1.603739 GTCTTTGGGCCCACCTGTC 60.604 63.158 28.70 11.55 41.11 3.51
578 647 2.081787 TCTTTGGGCCCACCTGTCA 61.082 57.895 28.70 5.47 41.11 3.58
579 648 1.152567 CTTTGGGCCCACCTGTCAA 60.153 57.895 28.70 14.69 41.11 3.18
580 649 0.758685 CTTTGGGCCCACCTGTCAAA 60.759 55.000 28.70 13.84 41.11 2.69
581 650 0.325671 TTTGGGCCCACCTGTCAAAA 60.326 50.000 28.70 11.15 41.11 2.44
582 651 0.105246 TTGGGCCCACCTGTCAAAAT 60.105 50.000 28.70 0.00 41.11 1.82
583 652 0.780637 TGGGCCCACCTGTCAAAATA 59.219 50.000 24.45 0.00 41.11 1.40
584 653 1.182667 GGGCCCACCTGTCAAAATAC 58.817 55.000 19.95 0.00 35.85 1.89
585 654 1.182667 GGCCCACCTGTCAAAATACC 58.817 55.000 0.00 0.00 0.00 2.73
586 655 1.182667 GCCCACCTGTCAAAATACCC 58.817 55.000 0.00 0.00 0.00 3.69
587 656 1.847328 CCCACCTGTCAAAATACCCC 58.153 55.000 0.00 0.00 0.00 4.95
588 657 1.618616 CCCACCTGTCAAAATACCCCC 60.619 57.143 0.00 0.00 0.00 5.40
589 658 1.459450 CACCTGTCAAAATACCCCCG 58.541 55.000 0.00 0.00 0.00 5.73
590 659 1.003812 CACCTGTCAAAATACCCCCGA 59.996 52.381 0.00 0.00 0.00 5.14
646 741 4.069232 TGCGCTCGGGTGAGGAAG 62.069 66.667 9.73 0.00 42.79 3.46
982 1129 4.809496 CGCTGGATTGGCTGGCCT 62.809 66.667 13.05 0.00 36.94 5.19
1018 1165 1.133513 ACATGATCTCCTCCTCGCTCT 60.134 52.381 0.00 0.00 0.00 4.09
1243 1390 3.690280 TGGGCTGCGTCATCGTCA 61.690 61.111 0.00 0.00 39.49 4.35
1287 1434 3.600410 ATTCCACCCCAAAGCCGGG 62.600 63.158 2.18 0.00 46.94 5.73
1358 1508 3.740115 TGCTCACTCTTTTTGGACTACC 58.260 45.455 0.00 0.00 0.00 3.18
1393 1544 4.142093 GGATGATGTTTATTGCAAGCCTGT 60.142 41.667 4.94 0.00 0.00 4.00
1399 1550 4.989797 TGTTTATTGCAAGCCTGTGAATTG 59.010 37.500 4.94 0.00 0.00 2.32
1406 1557 3.383761 CAAGCCTGTGAATTGAACAACC 58.616 45.455 0.00 0.00 0.00 3.77
1506 1760 4.156008 AGGAAAAACCAGCGCTACATTAAG 59.844 41.667 10.99 0.00 42.04 1.85
1556 1814 7.806690 TGTCATAAATTGTTCACTTCTACTGC 58.193 34.615 0.00 0.00 0.00 4.40
1558 1816 7.959651 GTCATAAATTGTTCACTTCTACTGCAG 59.040 37.037 13.48 13.48 0.00 4.41
1644 1906 5.660460 CCAGTATGTCAACAGTATGCAGTA 58.340 41.667 0.00 0.00 42.53 2.74
1731 2002 5.515797 TGTCTTACATTATGAGACGGAGG 57.484 43.478 0.00 0.00 44.98 4.30
1732 2003 4.341235 TGTCTTACATTATGAGACGGAGGG 59.659 45.833 0.00 0.00 44.98 4.30
1733 2004 4.583489 GTCTTACATTATGAGACGGAGGGA 59.417 45.833 0.00 0.00 34.53 4.20
1734 2005 4.827835 TCTTACATTATGAGACGGAGGGAG 59.172 45.833 0.00 0.00 0.00 4.30
1735 2006 3.033659 ACATTATGAGACGGAGGGAGT 57.966 47.619 0.00 0.00 0.00 3.85
1736 2007 4.180377 ACATTATGAGACGGAGGGAGTA 57.820 45.455 0.00 0.00 0.00 2.59
1737 2008 3.890147 ACATTATGAGACGGAGGGAGTAC 59.110 47.826 0.00 0.00 0.00 2.73
1738 2009 3.947612 TTATGAGACGGAGGGAGTACT 57.052 47.619 0.00 0.00 0.00 2.73
1739 2010 5.163120 ACATTATGAGACGGAGGGAGTACTA 60.163 44.000 0.00 0.00 0.00 1.82
1740 2011 5.579753 TTATGAGACGGAGGGAGTACTAT 57.420 43.478 0.00 0.00 0.00 2.12
1741 2012 3.947612 TGAGACGGAGGGAGTACTATT 57.052 47.619 0.00 0.00 0.00 1.73
1742 2013 4.246712 TGAGACGGAGGGAGTACTATTT 57.753 45.455 0.00 0.00 0.00 1.40
1743 2014 5.378230 TGAGACGGAGGGAGTACTATTTA 57.622 43.478 0.00 0.00 0.00 1.40
1744 2015 5.374921 TGAGACGGAGGGAGTACTATTTAG 58.625 45.833 0.00 0.00 0.00 1.85
1745 2016 4.727677 AGACGGAGGGAGTACTATTTAGG 58.272 47.826 0.00 0.00 0.00 2.69
1746 2017 4.414846 AGACGGAGGGAGTACTATTTAGGA 59.585 45.833 0.00 0.00 0.00 2.94
1747 2018 5.103771 AGACGGAGGGAGTACTATTTAGGAA 60.104 44.000 0.00 0.00 0.00 3.36
1748 2019 5.522641 ACGGAGGGAGTACTATTTAGGAAA 58.477 41.667 0.00 0.00 0.00 3.13
1749 2020 6.141790 ACGGAGGGAGTACTATTTAGGAAAT 58.858 40.000 0.00 0.00 34.90 2.17
1750 2021 7.300658 ACGGAGGGAGTACTATTTAGGAAATA 58.699 38.462 0.00 0.00 32.38 1.40
1751 2022 7.954620 ACGGAGGGAGTACTATTTAGGAAATAT 59.045 37.037 0.00 0.00 33.21 1.28
1752 2023 8.468399 CGGAGGGAGTACTATTTAGGAAATATC 58.532 40.741 0.00 0.00 33.21 1.63
1753 2024 9.322769 GGAGGGAGTACTATTTAGGAAATATCA 57.677 37.037 0.00 0.00 33.21 2.15
1755 2026 9.102453 AGGGAGTACTATTTAGGAAATATCACC 57.898 37.037 0.00 0.00 33.21 4.02
1756 2027 9.102453 GGGAGTACTATTTAGGAAATATCACCT 57.898 37.037 0.00 6.04 39.95 4.00
1757 2028 9.930693 GGAGTACTATTTAGGAAATATCACCTG 57.069 37.037 0.00 0.00 37.68 4.00
1762 2033 8.376270 ACTATTTAGGAAATATCACCTGTAGCC 58.624 37.037 9.91 0.00 37.68 3.93
1763 2034 6.569127 TTTAGGAAATATCACCTGTAGCCA 57.431 37.500 9.91 0.00 37.68 4.75
1764 2035 4.696479 AGGAAATATCACCTGTAGCCAG 57.304 45.455 0.00 0.00 38.50 4.85
1765 2036 4.040755 AGGAAATATCACCTGTAGCCAGT 58.959 43.478 0.00 0.00 36.95 4.00
1766 2037 5.216622 AGGAAATATCACCTGTAGCCAGTA 58.783 41.667 0.00 0.00 36.95 2.74
1767 2038 5.846714 AGGAAATATCACCTGTAGCCAGTAT 59.153 40.000 0.00 0.00 36.95 2.12
1768 2039 5.934625 GGAAATATCACCTGTAGCCAGTATG 59.065 44.000 0.00 0.00 36.95 2.39
1769 2040 2.918712 ATCACCTGTAGCCAGTATGC 57.081 50.000 0.00 0.00 36.95 3.14
1770 2041 0.830648 TCACCTGTAGCCAGTATGCC 59.169 55.000 0.00 0.00 36.95 4.40
1771 2042 0.541392 CACCTGTAGCCAGTATGCCA 59.459 55.000 0.00 0.00 36.95 4.92
1772 2043 1.065491 CACCTGTAGCCAGTATGCCAA 60.065 52.381 0.00 0.00 36.95 4.52
1773 2044 1.065418 ACCTGTAGCCAGTATGCCAAC 60.065 52.381 0.00 0.00 36.95 3.77
1774 2045 1.065491 CCTGTAGCCAGTATGCCAACA 60.065 52.381 0.00 0.00 36.95 3.33
1775 2046 2.283298 CTGTAGCCAGTATGCCAACAG 58.717 52.381 0.00 0.00 38.56 3.16
1776 2047 1.628340 TGTAGCCAGTATGCCAACAGT 59.372 47.619 0.00 0.00 31.97 3.55
1777 2048 2.835156 TGTAGCCAGTATGCCAACAGTA 59.165 45.455 0.00 0.00 31.97 2.74
1778 2049 3.454447 TGTAGCCAGTATGCCAACAGTAT 59.546 43.478 0.00 0.00 31.97 2.12
1779 2050 2.923121 AGCCAGTATGCCAACAGTATG 58.077 47.619 0.00 0.00 36.98 2.39
1780 2051 1.334869 GCCAGTATGCCAACAGTATGC 59.665 52.381 0.00 0.00 34.20 3.14
1781 2052 2.642427 CCAGTATGCCAACAGTATGCA 58.358 47.619 0.00 0.00 34.20 3.96
1782 2053 2.615447 CCAGTATGCCAACAGTATGCAG 59.385 50.000 0.00 0.00 38.58 4.41
1783 2054 3.273434 CAGTATGCCAACAGTATGCAGT 58.727 45.455 0.00 0.00 42.53 4.40
1784 2055 3.064408 CAGTATGCCAACAGTATGCAGTG 59.936 47.826 0.00 0.00 42.53 3.66
1785 2056 1.466856 ATGCCAACAGTATGCAGTGG 58.533 50.000 0.00 0.00 42.53 4.00
1786 2057 0.110295 TGCCAACAGTATGCAGTGGT 59.890 50.000 0.00 0.00 42.53 4.16
1787 2058 1.247567 GCCAACAGTATGCAGTGGTT 58.752 50.000 0.00 0.00 42.53 3.67
1788 2059 1.613437 GCCAACAGTATGCAGTGGTTT 59.387 47.619 0.00 0.00 42.53 3.27
1789 2060 2.035832 GCCAACAGTATGCAGTGGTTTT 59.964 45.455 0.00 0.00 42.53 2.43
1790 2061 3.857010 GCCAACAGTATGCAGTGGTTTTC 60.857 47.826 0.00 0.00 42.53 2.29
1791 2062 3.317711 CCAACAGTATGCAGTGGTTTTCA 59.682 43.478 0.00 0.00 42.53 2.69
1792 2063 4.539870 CAACAGTATGCAGTGGTTTTCAG 58.460 43.478 0.00 0.00 42.53 3.02
1793 2064 3.820557 ACAGTATGCAGTGGTTTTCAGT 58.179 40.909 0.00 0.00 42.53 3.41
1794 2065 3.815401 ACAGTATGCAGTGGTTTTCAGTC 59.185 43.478 0.00 0.00 42.53 3.51
1795 2066 3.814842 CAGTATGCAGTGGTTTTCAGTCA 59.185 43.478 0.00 0.00 0.00 3.41
1796 2067 4.456911 CAGTATGCAGTGGTTTTCAGTCAT 59.543 41.667 0.00 0.00 0.00 3.06
1797 2068 5.643348 CAGTATGCAGTGGTTTTCAGTCATA 59.357 40.000 0.00 0.00 0.00 2.15
1798 2069 5.643777 AGTATGCAGTGGTTTTCAGTCATAC 59.356 40.000 0.00 0.00 38.43 2.39
1799 2070 3.814625 TGCAGTGGTTTTCAGTCATACA 58.185 40.909 0.00 0.00 0.00 2.29
1800 2071 3.563808 TGCAGTGGTTTTCAGTCATACAC 59.436 43.478 0.00 0.00 0.00 2.90
1801 2072 3.563808 GCAGTGGTTTTCAGTCATACACA 59.436 43.478 0.00 0.00 0.00 3.72
1802 2073 4.036262 GCAGTGGTTTTCAGTCATACACAA 59.964 41.667 0.00 0.00 0.00 3.33
1803 2074 5.510671 CAGTGGTTTTCAGTCATACACAAC 58.489 41.667 0.00 0.00 0.00 3.32
1804 2075 5.065859 CAGTGGTTTTCAGTCATACACAACA 59.934 40.000 0.00 0.00 0.00 3.33
1805 2076 5.650266 AGTGGTTTTCAGTCATACACAACAA 59.350 36.000 0.00 0.00 0.00 2.83
1817 2088 2.944129 ACACAACAATAACCAGCACCT 58.056 42.857 0.00 0.00 0.00 4.00
1818 2089 4.093472 ACACAACAATAACCAGCACCTA 57.907 40.909 0.00 0.00 0.00 3.08
1849 2120 7.651027 ATTCGGCTATTACCCTATTACGTAT 57.349 36.000 0.00 0.00 0.00 3.06
1962 2243 3.278574 TGGTGTTGCTAATATGTGGCTC 58.721 45.455 0.00 0.00 0.00 4.70
1966 2247 5.409826 GGTGTTGCTAATATGTGGCTCTATC 59.590 44.000 0.00 0.00 0.00 2.08
1986 2267 3.084039 TCTGCAGGTATTTGCTTTGAGG 58.916 45.455 15.13 0.00 44.38 3.86
1996 2277 2.747855 CTTTGAGGGACGCAGGGC 60.748 66.667 0.00 0.00 40.62 5.19
2029 2310 4.394300 AGAATGCAACAGCTTATGTGAGTC 59.606 41.667 0.00 0.00 43.00 3.36
2166 2447 7.071071 TCCAAAGGGATTGAAAAACTCAGAAAT 59.929 33.333 0.00 0.00 41.85 2.17
2309 2590 9.802039 CTACAAGTATCTTCCTAGGATTCTAGT 57.198 37.037 13.57 7.01 40.98 2.57
2318 2621 8.993424 TCTTCCTAGGATTCTAGTATTTTTGCT 58.007 33.333 13.57 0.00 40.98 3.91
2341 2644 9.661563 TGCTAATTTATAATTATAGGTGTCCGG 57.338 33.333 5.36 0.00 0.00 5.14
2342 2645 9.880157 GCTAATTTATAATTATAGGTGTCCGGA 57.120 33.333 0.00 0.00 0.00 5.14
2347 2650 4.957684 AATTATAGGTGTCCGGAGAAGG 57.042 45.455 3.06 0.00 0.00 3.46
2348 2651 2.376695 TATAGGTGTCCGGAGAAGGG 57.623 55.000 3.06 0.00 0.00 3.95
2349 2652 0.338814 ATAGGTGTCCGGAGAAGGGT 59.661 55.000 3.06 0.00 0.00 4.34
2350 2653 0.324091 TAGGTGTCCGGAGAAGGGTC 60.324 60.000 3.06 0.00 0.00 4.46
2351 2654 2.657066 GGTGTCCGGAGAAGGGTCC 61.657 68.421 3.06 0.00 0.00 4.46
2357 2660 2.979649 GGAGAAGGGTCCGACCAC 59.020 66.667 19.43 8.70 41.02 4.16
2358 2661 1.609794 GGAGAAGGGTCCGACCACT 60.610 63.158 19.43 14.01 41.02 4.00
2359 2662 1.192803 GGAGAAGGGTCCGACCACTT 61.193 60.000 19.43 17.88 41.02 3.16
2360 2663 0.685660 GAGAAGGGTCCGACCACTTT 59.314 55.000 19.43 9.96 41.02 2.66
2361 2664 0.396811 AGAAGGGTCCGACCACTTTG 59.603 55.000 19.43 0.00 41.02 2.77
2362 2665 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
2363 2666 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
2364 2667 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
2374 2677 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
2375 2678 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
2376 2679 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
2377 2680 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
2378 2681 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
2379 2682 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
2380 2683 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
2381 2684 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
2382 2685 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
2383 2686 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
2384 2687 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
2385 2688 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
2386 2689 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
2387 2690 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
2388 2691 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
2389 2692 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
2390 2693 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
2391 2694 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
2392 2695 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
2393 2696 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
2394 2697 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
2395 2698 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
2396 2699 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
2397 2700 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
2398 2701 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
2399 2702 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
2400 2703 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
2410 2713 3.869623 TCTGCAAGAGGCTGATTCC 57.130 52.632 0.00 0.00 44.37 3.01
2411 2714 0.986527 TCTGCAAGAGGCTGATTCCA 59.013 50.000 0.00 0.00 44.37 3.53
2412 2715 1.065636 TCTGCAAGAGGCTGATTCCAG 60.066 52.381 0.00 0.00 44.37 3.86
2413 2716 0.034767 TGCAAGAGGCTGATTCCAGG 60.035 55.000 0.00 0.00 45.15 4.45
2414 2717 0.254178 GCAAGAGGCTGATTCCAGGA 59.746 55.000 0.00 0.00 40.72 3.86
2415 2718 2.016096 GCAAGAGGCTGATTCCAGGAC 61.016 57.143 0.00 0.00 40.72 3.85
2416 2719 1.558756 CAAGAGGCTGATTCCAGGACT 59.441 52.381 0.00 0.00 40.72 3.85
2417 2720 1.963985 AGAGGCTGATTCCAGGACTT 58.036 50.000 0.00 0.00 40.72 3.01
2418 2721 1.558756 AGAGGCTGATTCCAGGACTTG 59.441 52.381 0.00 0.00 40.72 3.16
2419 2722 1.556911 GAGGCTGATTCCAGGACTTGA 59.443 52.381 0.00 0.00 40.72 3.02
2420 2723 1.988107 AGGCTGATTCCAGGACTTGAA 59.012 47.619 0.00 0.00 40.72 2.69
2421 2724 2.087646 GGCTGATTCCAGGACTTGAAC 58.912 52.381 0.00 0.00 40.72 3.18
2422 2725 2.087646 GCTGATTCCAGGACTTGAACC 58.912 52.381 0.00 0.00 40.72 3.62
2423 2726 2.716217 CTGATTCCAGGACTTGAACCC 58.284 52.381 0.00 0.00 36.77 4.11
2424 2727 1.003118 TGATTCCAGGACTTGAACCCG 59.997 52.381 0.00 0.00 0.00 5.28
2425 2728 1.003233 GATTCCAGGACTTGAACCCGT 59.997 52.381 0.00 0.00 0.00 5.28
2426 2729 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
2427 2730 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
2428 2731 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
2429 2732 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
2430 2733 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
2431 2734 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
2432 2735 0.680061 GACTTGAACCCGTGACCTCT 59.320 55.000 0.00 0.00 0.00 3.69
2433 2736 1.070289 GACTTGAACCCGTGACCTCTT 59.930 52.381 0.00 0.00 0.00 2.85
2434 2737 1.202651 ACTTGAACCCGTGACCTCTTG 60.203 52.381 0.00 0.00 0.00 3.02
2435 2738 0.107831 TTGAACCCGTGACCTCTTGG 59.892 55.000 0.00 0.00 39.83 3.61
2449 2752 4.162592 TTGGTCACAAGGCAGCAG 57.837 55.556 0.00 0.00 31.73 4.24
2450 2753 2.195567 TTGGTCACAAGGCAGCAGC 61.196 57.895 0.00 0.00 41.10 5.25
2451 2754 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
2452 2755 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
2453 2756 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
2454 2757 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
2455 2758 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
2456 2759 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
2457 2760 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
2458 2761 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
2459 2762 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
2460 2763 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
2464 2767 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
2465 2768 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
2466 2769 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
2467 2770 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2468 2771 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2469 2772 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2470 2773 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2471 2774 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2495 2798 4.479619 CCTTCAAATCTAAGTTGCACAGC 58.520 43.478 0.00 0.00 0.00 4.40
2529 2832 6.516739 TTTGTGTTTCACATCTGTGGTTAA 57.483 33.333 10.26 1.03 44.16 2.01
2566 2871 5.163622 GCTCATTGCTTCAGCCATTTTAGTA 60.164 40.000 0.00 0.00 41.18 1.82
2570 2875 7.775093 TCATTGCTTCAGCCATTTTAGTATAGT 59.225 33.333 0.00 0.00 41.18 2.12
2571 2876 9.056005 CATTGCTTCAGCCATTTTAGTATAGTA 57.944 33.333 0.00 0.00 41.18 1.82
2572 2877 9.627123 ATTGCTTCAGCCATTTTAGTATAGTAA 57.373 29.630 0.00 0.00 41.18 2.24
2573 2878 9.627123 TTGCTTCAGCCATTTTAGTATAGTAAT 57.373 29.630 0.83 0.00 41.18 1.89
2574 2879 9.056005 TGCTTCAGCCATTTTAGTATAGTAATG 57.944 33.333 0.83 0.00 41.18 1.90
2575 2880 9.057089 GCTTCAGCCATTTTAGTATAGTAATGT 57.943 33.333 0.83 0.00 34.31 2.71
2611 2916 5.412594 AGTTTGTACTGTTGCATATCAGGTG 59.587 40.000 15.12 0.00 36.17 4.00
2636 2953 6.088085 GCGTTGGTTCTTTTTGTCTGAATATG 59.912 38.462 0.00 0.00 0.00 1.78
2703 3023 2.349297 ACACTCTCGATGAACGGAAC 57.651 50.000 0.00 0.00 42.82 3.62
2828 4820 4.838986 AGGCGACTACCTTACCAATATCAT 59.161 41.667 0.00 0.00 40.61 2.45
2888 4880 1.539157 GCAGGGAGAAGGTTCCAAAG 58.461 55.000 0.00 0.00 39.09 2.77
2906 4898 4.062293 CAAAGTACACATCCCGTTTCTCA 58.938 43.478 0.00 0.00 0.00 3.27
2908 4900 4.553330 AGTACACATCCCGTTTCTCAAT 57.447 40.909 0.00 0.00 0.00 2.57
3217 8766 2.544267 CCAGTCGTTTCCACTCAAGAAC 59.456 50.000 0.00 0.00 0.00 3.01
3333 8889 1.346395 ACACCGAGCCATGTGAACTTA 59.654 47.619 4.33 0.00 36.35 2.24
3347 8903 0.953960 AACTTAAGCCTGAACCCGCG 60.954 55.000 0.00 0.00 0.00 6.46
3349 8905 1.359459 CTTAAGCCTGAACCCGCGTC 61.359 60.000 4.92 0.00 0.00 5.19
3370 8926 0.790814 GCTTTGGAGTCGCACTACAC 59.209 55.000 1.23 0.00 39.14 2.90
3377 8933 0.599558 AGTCGCACTACACCGCTTTA 59.400 50.000 0.00 0.00 0.00 1.85
3378 8934 1.203994 AGTCGCACTACACCGCTTTAT 59.796 47.619 0.00 0.00 0.00 1.40
3398 8954 9.162764 GCTTTATAGTTTCACTTGGAGTAATGA 57.837 33.333 0.00 0.00 0.00 2.57
3404 8960 2.094182 TCACTTGGAGTAATGAGCGGTC 60.094 50.000 7.89 7.89 0.00 4.79
3519 9076 0.327924 TGTCTGACCATTGCCCGATT 59.672 50.000 5.17 0.00 0.00 3.34
3525 9082 0.625849 ACCATTGCCCGATTCTCCTT 59.374 50.000 0.00 0.00 0.00 3.36
3536 9093 3.382855 CGATTCTCCTTGCTGATGAGAG 58.617 50.000 0.00 0.00 36.57 3.20
3569 9126 2.575532 CCCTTGCAGTTTCAAGTCTGA 58.424 47.619 3.29 0.00 41.29 3.27
3795 9353 1.133606 AGAATCGGACCTCTCTCTCCC 60.134 57.143 0.00 0.00 0.00 4.30
3907 9476 1.686052 GAGGGTGATGCCAACACAAAA 59.314 47.619 7.43 0.00 39.65 2.44
3908 9477 2.102252 GAGGGTGATGCCAACACAAAAA 59.898 45.455 7.43 0.00 39.65 1.94
3929 9498 7.693969 AAAAATCTCACCTTGGAGTCAATAG 57.306 36.000 0.00 0.00 36.30 1.73
3950 9519 2.159827 GGAGACGACGAAAAAGCACATC 60.160 50.000 0.00 0.00 0.00 3.06
3966 9535 4.042062 AGCACATCCATAGGCTAAAGCATA 59.958 41.667 0.00 1.07 44.36 3.14
3983 9552 6.619329 AAGCATAACAATGGTTGGGTAATT 57.381 33.333 0.00 0.00 40.31 1.40
4017 9588 5.531287 GTGAAGGAAACTATTGTCCACAGTT 59.469 40.000 0.00 0.00 42.68 3.16
4034 9605 5.939296 CCACAGTTATTTTTCCAATGCCATT 59.061 36.000 0.00 0.00 0.00 3.16
4035 9606 6.128227 CCACAGTTATTTTTCCAATGCCATTG 60.128 38.462 10.52 10.52 39.94 2.82
4043 9614 3.613661 CAATGCCATTGGTAGGGGT 57.386 52.632 9.62 0.00 36.63 4.95
4044 9615 1.402787 CAATGCCATTGGTAGGGGTC 58.597 55.000 9.62 0.00 36.63 4.46
4045 9616 1.006813 AATGCCATTGGTAGGGGTCA 58.993 50.000 4.26 0.00 0.00 4.02
4046 9617 1.234806 ATGCCATTGGTAGGGGTCAT 58.765 50.000 4.26 0.00 0.00 3.06
4047 9618 0.258484 TGCCATTGGTAGGGGTCATG 59.742 55.000 4.26 0.00 0.00 3.07
4048 9619 1.109323 GCCATTGGTAGGGGTCATGC 61.109 60.000 4.26 0.00 0.00 4.06
4049 9620 0.258484 CCATTGGTAGGGGTCATGCA 59.742 55.000 0.00 0.00 0.00 3.96
4050 9621 1.341877 CCATTGGTAGGGGTCATGCAA 60.342 52.381 0.00 0.00 0.00 4.08
4051 9622 1.750778 CATTGGTAGGGGTCATGCAAC 59.249 52.381 0.00 0.00 0.00 4.17
4157 9729 0.889186 GAGTGCCGTGGACCAAATGT 60.889 55.000 0.00 0.00 0.00 2.71
4230 12414 6.526674 GCTATAAAATATGGCGGCATTAACAC 59.473 38.462 30.54 7.40 0.00 3.32
4265 12449 2.373502 GGGGGAGAATGAAGATACCAGG 59.626 54.545 0.00 0.00 0.00 4.45
4266 12450 3.318313 GGGGAGAATGAAGATACCAGGA 58.682 50.000 0.00 0.00 0.00 3.86
4267 12451 3.716872 GGGGAGAATGAAGATACCAGGAA 59.283 47.826 0.00 0.00 0.00 3.36
4268 12452 4.445019 GGGGAGAATGAAGATACCAGGAAC 60.445 50.000 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
92 93 4.113354 GTCATCCTCTTGTCGGTGAATAC 58.887 47.826 0.00 0.00 0.00 1.89
118 119 1.337823 GCTTGGTTAGCCACTTCTCGA 60.338 52.381 0.00 0.00 46.01 4.04
141 142 3.348119 TGTGTAAGCAAATATCCGCCAA 58.652 40.909 0.00 0.00 0.00 4.52
144 145 4.752101 AGATCTGTGTAAGCAAATATCCGC 59.248 41.667 0.00 0.00 0.00 5.54
153 154 7.217200 AGAAAACAACTAGATCTGTGTAAGCA 58.783 34.615 5.18 0.00 0.00 3.91
194 195 4.416620 CCTTTTAATTAAACGGCATGCGA 58.583 39.130 17.62 0.00 29.56 5.10
195 196 4.753516 CCTTTTAATTAAACGGCATGCG 57.246 40.909 17.62 9.76 29.56 4.73
201 202 6.210078 TGAGTGTTGCCTTTTAATTAAACGG 58.790 36.000 22.88 22.88 37.57 4.44
207 208 6.403866 TCACATGAGTGTTGCCTTTTAATT 57.596 33.333 0.00 0.00 46.01 1.40
208 209 6.017400 CTCACATGAGTGTTGCCTTTTAAT 57.983 37.500 0.00 0.00 46.01 1.40
209 210 5.437289 CTCACATGAGTGTTGCCTTTTAA 57.563 39.130 0.00 0.00 46.01 1.52
211 212 3.996150 CTCACATGAGTGTTGCCTTTT 57.004 42.857 0.00 0.00 46.01 2.27
223 224 6.429791 TTTTGTTCGAGAAAACTCACATGA 57.570 33.333 0.00 0.00 0.00 3.07
225 226 7.264373 AGATTTTGTTCGAGAAAACTCACAT 57.736 32.000 6.58 0.00 0.00 3.21
226 227 6.677781 AGATTTTGTTCGAGAAAACTCACA 57.322 33.333 6.58 0.00 0.00 3.58
227 228 6.075362 GCAAGATTTTGTTCGAGAAAACTCAC 60.075 38.462 6.58 0.00 36.65 3.51
228 229 5.971202 GCAAGATTTTGTTCGAGAAAACTCA 59.029 36.000 6.58 0.00 36.65 3.41
284 350 4.572389 CAGAAGATATTTCACTTCCCCGTG 59.428 45.833 0.00 0.00 42.09 4.94
285 351 4.469945 TCAGAAGATATTTCACTTCCCCGT 59.530 41.667 0.00 0.00 42.09 5.28
358 427 6.636562 TCTGAAACGAGGGAGTATATCTTC 57.363 41.667 0.00 0.00 0.00 2.87
367 436 4.184629 CCTTACATTCTGAAACGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
368 437 3.581332 ACCTTACATTCTGAAACGAGGGA 59.419 43.478 13.42 0.00 0.00 4.20
369 438 3.684788 CACCTTACATTCTGAAACGAGGG 59.315 47.826 13.42 8.20 0.00 4.30
370 439 4.315803 ACACCTTACATTCTGAAACGAGG 58.684 43.478 0.00 2.94 0.00 4.63
371 440 7.330946 TCAATACACCTTACATTCTGAAACGAG 59.669 37.037 0.00 0.00 0.00 4.18
372 441 7.156000 TCAATACACCTTACATTCTGAAACGA 58.844 34.615 0.00 0.00 0.00 3.85
373 442 7.359262 TCAATACACCTTACATTCTGAAACG 57.641 36.000 0.00 0.00 0.00 3.60
377 446 8.664798 CGAAAATCAATACACCTTACATTCTGA 58.335 33.333 0.00 0.00 0.00 3.27
380 449 7.218204 GCACGAAAATCAATACACCTTACATTC 59.782 37.037 0.00 0.00 0.00 2.67
383 452 5.470437 TGCACGAAAATCAATACACCTTACA 59.530 36.000 0.00 0.00 0.00 2.41
384 453 5.933790 TGCACGAAAATCAATACACCTTAC 58.066 37.500 0.00 0.00 0.00 2.34
385 454 6.205853 ACTTGCACGAAAATCAATACACCTTA 59.794 34.615 0.00 0.00 0.00 2.69
387 456 4.518970 ACTTGCACGAAAATCAATACACCT 59.481 37.500 0.00 0.00 0.00 4.00
388 457 4.794169 ACTTGCACGAAAATCAATACACC 58.206 39.130 0.00 0.00 0.00 4.16
389 458 5.448438 TGACTTGCACGAAAATCAATACAC 58.552 37.500 0.00 0.00 0.00 2.90
390 459 5.681337 TGACTTGCACGAAAATCAATACA 57.319 34.783 0.00 0.00 0.00 2.29
391 460 5.342259 GGTTGACTTGCACGAAAATCAATAC 59.658 40.000 0.00 0.00 0.00 1.89
395 464 2.685388 TGGTTGACTTGCACGAAAATCA 59.315 40.909 0.00 0.00 0.00 2.57
396 465 3.243068 ACTGGTTGACTTGCACGAAAATC 60.243 43.478 0.00 0.00 0.00 2.17
397 466 2.687935 ACTGGTTGACTTGCACGAAAAT 59.312 40.909 0.00 0.00 0.00 1.82
398 467 2.088423 ACTGGTTGACTTGCACGAAAA 58.912 42.857 0.00 0.00 0.00 2.29
399 468 1.745232 ACTGGTTGACTTGCACGAAA 58.255 45.000 0.00 0.00 0.00 3.46
400 469 1.400142 CAACTGGTTGACTTGCACGAA 59.600 47.619 7.61 0.00 42.93 3.85
401 470 1.013596 CAACTGGTTGACTTGCACGA 58.986 50.000 7.61 0.00 42.93 4.35
402 471 1.013596 TCAACTGGTTGACTTGCACG 58.986 50.000 11.53 0.00 43.90 5.34
409 478 7.549256 GTTGGTCAAACTTTCAACTGGTTGAC 61.549 42.308 14.66 13.48 41.06 3.18
410 479 4.082845 TGGTCAAACTTTCAACTGGTTGA 58.917 39.130 11.53 11.53 46.72 3.18
412 481 4.282195 TGTTGGTCAAACTTTCAACTGGTT 59.718 37.500 0.00 0.00 39.87 3.67
413 482 3.829601 TGTTGGTCAAACTTTCAACTGGT 59.170 39.130 0.00 0.00 39.87 4.00
414 483 4.448537 TGTTGGTCAAACTTTCAACTGG 57.551 40.909 0.00 0.00 39.87 4.00
415 484 9.398170 CTATAATGTTGGTCAAACTTTCAACTG 57.602 33.333 0.00 0.00 39.87 3.16
416 485 9.349713 TCTATAATGTTGGTCAAACTTTCAACT 57.650 29.630 0.00 0.00 39.87 3.16
417 486 9.959749 TTCTATAATGTTGGTCAAACTTTCAAC 57.040 29.630 0.00 0.00 39.70 3.18
419 488 9.126151 TGTTCTATAATGTTGGTCAAACTTTCA 57.874 29.630 0.00 0.00 39.70 2.69
420 489 9.959749 TTGTTCTATAATGTTGGTCAAACTTTC 57.040 29.630 0.00 0.00 39.70 2.62
440 509 9.846248 GTATTGCAGATGTTTCTATTTTGTTCT 57.154 29.630 0.00 0.00 0.00 3.01
442 511 8.806146 AGGTATTGCAGATGTTTCTATTTTGTT 58.194 29.630 0.00 0.00 0.00 2.83
443 512 8.353423 AGGTATTGCAGATGTTTCTATTTTGT 57.647 30.769 0.00 0.00 0.00 2.83
476 545 8.840321 CGATCATGGAAGGTAGTTCAATATTTT 58.160 33.333 0.00 0.00 36.82 1.82
477 546 8.210946 TCGATCATGGAAGGTAGTTCAATATTT 58.789 33.333 0.00 0.00 36.82 1.40
478 547 7.735917 TCGATCATGGAAGGTAGTTCAATATT 58.264 34.615 0.00 0.00 36.82 1.28
479 548 7.303182 TCGATCATGGAAGGTAGTTCAATAT 57.697 36.000 0.00 0.00 36.82 1.28
480 549 6.724893 TCGATCATGGAAGGTAGTTCAATA 57.275 37.500 0.00 0.00 36.82 1.90
481 550 5.614324 TCGATCATGGAAGGTAGTTCAAT 57.386 39.130 0.00 0.00 36.82 2.57
483 552 4.649218 TGATCGATCATGGAAGGTAGTTCA 59.351 41.667 23.99 0.00 36.82 3.18
484 553 5.201713 TGATCGATCATGGAAGGTAGTTC 57.798 43.478 23.99 0.00 0.00 3.01
485 554 5.614324 TTGATCGATCATGGAAGGTAGTT 57.386 39.130 27.75 0.00 36.56 2.24
487 556 6.226052 TCATTTGATCGATCATGGAAGGTAG 58.774 40.000 27.75 11.21 36.56 3.18
490 559 7.860918 ATATCATTTGATCGATCATGGAAGG 57.139 36.000 27.75 19.98 36.56 3.46
539 608 9.846248 CAAAGACGGAAAATGAGAGAAAAATAT 57.154 29.630 0.00 0.00 0.00 1.28
540 609 8.296713 CCAAAGACGGAAAATGAGAGAAAAATA 58.703 33.333 0.00 0.00 0.00 1.40
541 610 7.147976 CCAAAGACGGAAAATGAGAGAAAAAT 58.852 34.615 0.00 0.00 0.00 1.82
552 621 0.178947 TGGGCCCAAAGACGGAAAAT 60.179 50.000 26.33 0.00 0.00 1.82
557 626 3.966543 AGGTGGGCCCAAAGACGG 61.967 66.667 30.64 0.00 34.66 4.79
575 644 2.773993 TGACTCGGGGGTATTTTGAC 57.226 50.000 0.00 0.00 0.00 3.18
576 645 4.310022 AAATGACTCGGGGGTATTTTGA 57.690 40.909 0.00 0.00 0.00 2.69
577 646 5.400066 AAAAATGACTCGGGGGTATTTTG 57.600 39.130 7.03 0.00 32.92 2.44
631 726 4.148825 CCCTTCCTCACCCGAGCG 62.149 72.222 0.00 0.00 38.00 5.03
632 727 2.291043 TTCCCTTCCTCACCCGAGC 61.291 63.158 0.00 0.00 38.00 5.03
633 728 1.192146 TGTTCCCTTCCTCACCCGAG 61.192 60.000 0.00 0.00 39.16 4.63
634 729 1.152204 TGTTCCCTTCCTCACCCGA 60.152 57.895 0.00 0.00 0.00 5.14
635 730 1.192146 TCTGTTCCCTTCCTCACCCG 61.192 60.000 0.00 0.00 0.00 5.28
636 731 0.615850 CTCTGTTCCCTTCCTCACCC 59.384 60.000 0.00 0.00 0.00 4.61
637 732 1.276705 GACTCTGTTCCCTTCCTCACC 59.723 57.143 0.00 0.00 0.00 4.02
638 733 2.232696 GAGACTCTGTTCCCTTCCTCAC 59.767 54.545 0.00 0.00 0.00 3.51
639 734 2.530701 GAGACTCTGTTCCCTTCCTCA 58.469 52.381 0.00 0.00 0.00 3.86
640 735 1.828595 GGAGACTCTGTTCCCTTCCTC 59.171 57.143 1.74 0.00 0.00 3.71
646 741 1.828595 GAGGAAGGAGACTCTGTTCCC 59.171 57.143 23.15 15.51 42.68 3.97
982 1129 2.095461 CATGTCAGACCGAAGAGAGGA 58.905 52.381 0.00 0.00 0.00 3.71
1243 1390 2.048127 GACGACTTGGCCTTCGCT 60.048 61.111 18.27 8.60 38.88 4.93
1358 1508 4.970662 AACATCATCCGACAAATCCTTG 57.029 40.909 0.00 0.00 38.61 3.61
1369 1519 3.067180 AGGCTTGCAATAAACATCATCCG 59.933 43.478 0.00 0.00 0.00 4.18
1393 1544 5.630121 ACTGGTAGATGGTTGTTCAATTCA 58.370 37.500 0.00 0.00 0.00 2.57
1399 1550 3.197983 AGGCTACTGGTAGATGGTTGTTC 59.802 47.826 11.44 0.00 35.21 3.18
1482 1735 1.234821 TGTAGCGCTGGTTTTTCCTG 58.765 50.000 22.90 0.00 38.06 3.86
1558 1816 7.120619 GATGTATCTATCATCTGCTGGACAGC 61.121 46.154 16.98 16.98 46.76 4.40
1644 1906 9.283768 TCATATTGTTGTGTATGACTGAAAACT 57.716 29.630 0.00 0.00 33.60 2.66
1702 1973 8.664798 CCGTCTCATAATGTAAGACATTTTTCA 58.335 33.333 9.92 0.00 45.80 2.69
1703 1974 8.879759 TCCGTCTCATAATGTAAGACATTTTTC 58.120 33.333 9.92 0.00 45.80 2.29
1704 1975 8.786826 TCCGTCTCATAATGTAAGACATTTTT 57.213 30.769 9.92 0.00 45.80 1.94
1708 1979 5.011125 CCCTCCGTCTCATAATGTAAGACAT 59.989 44.000 0.00 0.00 41.31 3.06
1709 1980 4.341235 CCCTCCGTCTCATAATGTAAGACA 59.659 45.833 0.00 0.00 39.49 3.41
1710 1981 4.583489 TCCCTCCGTCTCATAATGTAAGAC 59.417 45.833 0.00 0.00 36.82 3.01
1711 1982 4.800023 TCCCTCCGTCTCATAATGTAAGA 58.200 43.478 0.00 0.00 0.00 2.10
1712 1983 4.585162 ACTCCCTCCGTCTCATAATGTAAG 59.415 45.833 0.00 0.00 0.00 2.34
1713 1984 4.543689 ACTCCCTCCGTCTCATAATGTAA 58.456 43.478 0.00 0.00 0.00 2.41
1714 1985 4.180377 ACTCCCTCCGTCTCATAATGTA 57.820 45.455 0.00 0.00 0.00 2.29
1715 1986 3.033659 ACTCCCTCCGTCTCATAATGT 57.966 47.619 0.00 0.00 0.00 2.71
1716 1987 4.145807 AGTACTCCCTCCGTCTCATAATG 58.854 47.826 0.00 0.00 0.00 1.90
1717 1988 4.456662 AGTACTCCCTCCGTCTCATAAT 57.543 45.455 0.00 0.00 0.00 1.28
1718 1989 3.947612 AGTACTCCCTCCGTCTCATAA 57.052 47.619 0.00 0.00 0.00 1.90
1719 1990 5.579753 AATAGTACTCCCTCCGTCTCATA 57.420 43.478 0.00 0.00 0.00 2.15
1720 1991 4.456662 AATAGTACTCCCTCCGTCTCAT 57.543 45.455 0.00 0.00 0.00 2.90
1721 1992 3.947612 AATAGTACTCCCTCCGTCTCA 57.052 47.619 0.00 0.00 0.00 3.27
1722 1993 4.761227 CCTAAATAGTACTCCCTCCGTCTC 59.239 50.000 0.00 0.00 0.00 3.36
1723 1994 4.414846 TCCTAAATAGTACTCCCTCCGTCT 59.585 45.833 0.00 0.00 0.00 4.18
1724 1995 4.723309 TCCTAAATAGTACTCCCTCCGTC 58.277 47.826 0.00 0.00 0.00 4.79
1725 1996 4.803329 TCCTAAATAGTACTCCCTCCGT 57.197 45.455 0.00 0.00 0.00 4.69
1726 1997 6.667558 ATTTCCTAAATAGTACTCCCTCCG 57.332 41.667 0.00 0.00 0.00 4.63
1727 1998 9.322769 TGATATTTCCTAAATAGTACTCCCTCC 57.677 37.037 0.00 0.00 36.83 4.30
1729 2000 9.102453 GGTGATATTTCCTAAATAGTACTCCCT 57.898 37.037 0.00 0.00 36.83 4.20
1730 2001 9.102453 AGGTGATATTTCCTAAATAGTACTCCC 57.898 37.037 0.00 0.00 36.83 4.30
1731 2002 9.930693 CAGGTGATATTTCCTAAATAGTACTCC 57.069 37.037 0.00 0.00 36.83 3.85
1736 2007 8.376270 GGCTACAGGTGATATTTCCTAAATAGT 58.624 37.037 0.35 0.00 36.83 2.12
1737 2008 8.375506 TGGCTACAGGTGATATTTCCTAAATAG 58.624 37.037 0.35 4.62 36.83 1.73
1738 2009 8.270137 TGGCTACAGGTGATATTTCCTAAATA 57.730 34.615 0.35 0.00 37.71 1.40
1739 2010 7.149202 TGGCTACAGGTGATATTTCCTAAAT 57.851 36.000 0.35 0.00 32.26 1.40
1740 2011 6.569127 TGGCTACAGGTGATATTTCCTAAA 57.431 37.500 0.35 0.00 32.26 1.85
1741 2012 6.174720 CTGGCTACAGGTGATATTTCCTAA 57.825 41.667 0.35 0.00 41.13 2.69
1742 2013 5.808366 CTGGCTACAGGTGATATTTCCTA 57.192 43.478 0.35 0.00 41.13 2.94
1743 2014 4.696479 CTGGCTACAGGTGATATTTCCT 57.304 45.455 0.00 0.00 41.13 3.36
1757 2028 2.403252 ACTGTTGGCATACTGGCTAC 57.597 50.000 8.00 8.00 45.65 3.58
1758 2029 3.744214 GCATACTGTTGGCATACTGGCTA 60.744 47.826 2.28 0.00 44.10 3.93
1759 2030 2.923121 CATACTGTTGGCATACTGGCT 58.077 47.619 2.28 0.00 44.10 4.75
1760 2031 1.334869 GCATACTGTTGGCATACTGGC 59.665 52.381 0.00 0.00 44.03 4.85
1761 2032 2.615447 CTGCATACTGTTGGCATACTGG 59.385 50.000 6.54 0.00 36.87 4.00
1762 2033 3.064408 CACTGCATACTGTTGGCATACTG 59.936 47.826 6.54 0.00 36.87 2.74
1763 2034 3.273434 CACTGCATACTGTTGGCATACT 58.727 45.455 6.54 0.00 36.87 2.12
1764 2035 2.355756 CCACTGCATACTGTTGGCATAC 59.644 50.000 6.54 0.00 36.87 2.39
1765 2036 2.026356 ACCACTGCATACTGTTGGCATA 60.026 45.455 6.54 0.00 36.87 3.14
1766 2037 1.272092 ACCACTGCATACTGTTGGCAT 60.272 47.619 6.54 0.00 36.87 4.40
1767 2038 0.110295 ACCACTGCATACTGTTGGCA 59.890 50.000 6.03 6.03 35.96 4.92
1768 2039 1.247567 AACCACTGCATACTGTTGGC 58.752 50.000 0.00 0.00 0.00 4.52
1769 2040 3.317711 TGAAAACCACTGCATACTGTTGG 59.682 43.478 0.00 0.00 0.00 3.77
1770 2041 4.036734 ACTGAAAACCACTGCATACTGTTG 59.963 41.667 0.00 0.00 0.00 3.33
1771 2042 4.207165 ACTGAAAACCACTGCATACTGTT 58.793 39.130 0.00 0.00 0.00 3.16
1772 2043 3.815401 GACTGAAAACCACTGCATACTGT 59.185 43.478 0.00 0.00 0.00 3.55
1773 2044 3.814842 TGACTGAAAACCACTGCATACTG 59.185 43.478 0.00 0.00 0.00 2.74
1774 2045 4.085357 TGACTGAAAACCACTGCATACT 57.915 40.909 0.00 0.00 0.00 2.12
1775 2046 5.411361 TGTATGACTGAAAACCACTGCATAC 59.589 40.000 0.00 0.00 38.06 2.39
1776 2047 5.411361 GTGTATGACTGAAAACCACTGCATA 59.589 40.000 0.00 0.00 0.00 3.14
1777 2048 4.216257 GTGTATGACTGAAAACCACTGCAT 59.784 41.667 0.00 0.00 0.00 3.96
1778 2049 3.563808 GTGTATGACTGAAAACCACTGCA 59.436 43.478 0.00 0.00 0.00 4.41
1779 2050 3.563808 TGTGTATGACTGAAAACCACTGC 59.436 43.478 0.00 0.00 0.00 4.40
1780 2051 5.065859 TGTTGTGTATGACTGAAAACCACTG 59.934 40.000 0.00 0.00 0.00 3.66
1781 2052 5.189928 TGTTGTGTATGACTGAAAACCACT 58.810 37.500 0.00 0.00 0.00 4.00
1782 2053 5.493133 TGTTGTGTATGACTGAAAACCAC 57.507 39.130 0.00 0.00 0.00 4.16
1783 2054 6.707440 ATTGTTGTGTATGACTGAAAACCA 57.293 33.333 0.00 0.00 0.00 3.67
1784 2055 7.593644 GGTTATTGTTGTGTATGACTGAAAACC 59.406 37.037 0.00 0.00 0.00 3.27
1785 2056 8.132362 TGGTTATTGTTGTGTATGACTGAAAAC 58.868 33.333 0.00 0.00 0.00 2.43
1786 2057 8.226819 TGGTTATTGTTGTGTATGACTGAAAA 57.773 30.769 0.00 0.00 0.00 2.29
1787 2058 7.521423 GCTGGTTATTGTTGTGTATGACTGAAA 60.521 37.037 0.00 0.00 0.00 2.69
1788 2059 6.072728 GCTGGTTATTGTTGTGTATGACTGAA 60.073 38.462 0.00 0.00 0.00 3.02
1789 2060 5.411361 GCTGGTTATTGTTGTGTATGACTGA 59.589 40.000 0.00 0.00 0.00 3.41
1790 2061 5.181056 TGCTGGTTATTGTTGTGTATGACTG 59.819 40.000 0.00 0.00 0.00 3.51
1791 2062 5.181245 GTGCTGGTTATTGTTGTGTATGACT 59.819 40.000 0.00 0.00 0.00 3.41
1792 2063 5.390613 GTGCTGGTTATTGTTGTGTATGAC 58.609 41.667 0.00 0.00 0.00 3.06
1793 2064 4.457603 GGTGCTGGTTATTGTTGTGTATGA 59.542 41.667 0.00 0.00 0.00 2.15
1794 2065 4.458989 AGGTGCTGGTTATTGTTGTGTATG 59.541 41.667 0.00 0.00 0.00 2.39
1795 2066 4.662278 AGGTGCTGGTTATTGTTGTGTAT 58.338 39.130 0.00 0.00 0.00 2.29
1796 2067 4.093472 AGGTGCTGGTTATTGTTGTGTA 57.907 40.909 0.00 0.00 0.00 2.90
1797 2068 2.944129 AGGTGCTGGTTATTGTTGTGT 58.056 42.857 0.00 0.00 0.00 3.72
1798 2069 4.458989 ACATAGGTGCTGGTTATTGTTGTG 59.541 41.667 0.00 0.00 0.00 3.33
1799 2070 4.662278 ACATAGGTGCTGGTTATTGTTGT 58.338 39.130 0.00 0.00 0.00 3.32
1800 2071 5.880332 ACTACATAGGTGCTGGTTATTGTTG 59.120 40.000 0.00 0.00 0.00 3.33
1801 2072 6.062258 ACTACATAGGTGCTGGTTATTGTT 57.938 37.500 0.00 0.00 0.00 2.83
1802 2073 5.693769 ACTACATAGGTGCTGGTTATTGT 57.306 39.130 0.00 0.00 0.00 2.71
1803 2074 7.116376 CGAATACTACATAGGTGCTGGTTATTG 59.884 40.741 0.00 0.00 0.00 1.90
1804 2075 7.152645 CGAATACTACATAGGTGCTGGTTATT 58.847 38.462 0.00 0.00 0.00 1.40
1805 2076 6.295123 CCGAATACTACATAGGTGCTGGTTAT 60.295 42.308 0.00 0.00 0.00 1.89
1817 2088 9.705103 AATAGGGTAATAGCCGAATACTACATA 57.295 33.333 2.53 0.00 41.56 2.29
1818 2089 8.605325 AATAGGGTAATAGCCGAATACTACAT 57.395 34.615 2.53 0.00 41.56 2.29
1962 2243 5.008415 CCTCAAAGCAAATACCTGCAGATAG 59.992 44.000 17.39 0.15 45.18 2.08
1966 2247 2.165030 CCCTCAAAGCAAATACCTGCAG 59.835 50.000 6.78 6.78 45.18 4.41
1986 2267 1.718757 CTGCTAAATGCCCTGCGTCC 61.719 60.000 0.00 0.00 42.00 4.79
2016 2297 1.484240 GGCTCCAGACTCACATAAGCT 59.516 52.381 0.00 0.00 0.00 3.74
2029 2310 1.841302 TAGTGGTTGCAGGGCTCCAG 61.841 60.000 6.10 0.00 35.17 3.86
2166 2447 0.396435 CCCTTACATCTATGCCGGCA 59.604 55.000 34.80 34.80 0.00 5.69
2341 2644 0.685660 AAAGTGGTCGGACCCTTCTC 59.314 55.000 23.81 9.42 37.50 2.87
2342 2645 0.396811 CAAAGTGGTCGGACCCTTCT 59.603 55.000 23.81 15.83 37.50 2.85
2343 2646 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
2345 2648 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
2346 2649 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
2347 2650 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
2348 2651 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
2353 2656 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
2354 2657 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
2355 2658 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
2356 2659 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
2357 2660 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
2358 2661 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
2359 2662 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
2360 2663 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
2361 2664 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
2362 2665 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
2363 2666 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
2364 2667 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
2365 2668 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
2366 2669 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
2367 2670 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
2368 2671 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
2369 2672 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
2370 2673 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
2371 2674 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
2372 2675 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
2373 2676 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
2374 2677 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
2375 2678 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
2376 2679 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
2377 2680 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
2378 2681 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
2379 2682 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
2380 2683 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
2381 2684 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
2382 2685 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
2383 2686 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
2384 2687 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
2385 2688 3.603532 TCAGCCTCTTGCAGAAATGTAG 58.396 45.455 0.00 0.00 44.83 2.74
2386 2689 3.701205 TCAGCCTCTTGCAGAAATGTA 57.299 42.857 0.00 0.00 44.83 2.29
2387 2690 2.574006 TCAGCCTCTTGCAGAAATGT 57.426 45.000 0.00 0.00 44.83 2.71
2388 2691 3.181489 GGAATCAGCCTCTTGCAGAAATG 60.181 47.826 0.00 0.00 44.83 2.32
2389 2692 3.022406 GGAATCAGCCTCTTGCAGAAAT 58.978 45.455 0.00 0.00 44.83 2.17
2390 2693 2.224843 TGGAATCAGCCTCTTGCAGAAA 60.225 45.455 0.00 0.00 44.83 2.52
2391 2694 1.352017 TGGAATCAGCCTCTTGCAGAA 59.648 47.619 0.00 0.00 44.83 3.02
2392 2695 0.986527 TGGAATCAGCCTCTTGCAGA 59.013 50.000 0.00 0.00 44.83 4.26
2393 2696 1.380524 CTGGAATCAGCCTCTTGCAG 58.619 55.000 0.00 0.00 44.83 4.41
2394 2697 0.034767 CCTGGAATCAGCCTCTTGCA 60.035 55.000 0.00 0.00 44.83 4.08
2395 2698 0.254178 TCCTGGAATCAGCCTCTTGC 59.746 55.000 0.00 0.00 39.61 4.01
2396 2699 1.558756 AGTCCTGGAATCAGCCTCTTG 59.441 52.381 0.00 0.00 39.61 3.02
2397 2700 1.963985 AGTCCTGGAATCAGCCTCTT 58.036 50.000 0.00 0.00 39.61 2.85
2398 2701 1.558756 CAAGTCCTGGAATCAGCCTCT 59.441 52.381 0.00 0.00 39.61 3.69
2399 2702 1.556911 TCAAGTCCTGGAATCAGCCTC 59.443 52.381 0.00 0.00 39.61 4.70
2400 2703 1.661463 TCAAGTCCTGGAATCAGCCT 58.339 50.000 0.00 0.00 39.61 4.58
2401 2704 2.087646 GTTCAAGTCCTGGAATCAGCC 58.912 52.381 0.00 0.00 39.61 4.85
2402 2705 2.087646 GGTTCAAGTCCTGGAATCAGC 58.912 52.381 0.00 0.00 39.61 4.26
2403 2706 2.716217 GGGTTCAAGTCCTGGAATCAG 58.284 52.381 0.00 0.00 40.59 2.90
2404 2707 1.003118 CGGGTTCAAGTCCTGGAATCA 59.997 52.381 0.00 0.00 0.00 2.57
2405 2708 1.003233 ACGGGTTCAAGTCCTGGAATC 59.997 52.381 0.00 0.00 35.79 2.52
2406 2709 1.064825 ACGGGTTCAAGTCCTGGAAT 58.935 50.000 0.00 0.00 35.79 3.01
2407 2710 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
2408 2711 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
2409 2712 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
2410 2713 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
2411 2714 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
2412 2715 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
2413 2716 0.680061 AGAGGTCACGGGTTCAAGTC 59.320 55.000 0.00 0.00 0.00 3.01
2414 2717 1.129058 AAGAGGTCACGGGTTCAAGT 58.871 50.000 0.00 0.00 0.00 3.16
2415 2718 1.512926 CAAGAGGTCACGGGTTCAAG 58.487 55.000 0.00 0.00 0.00 3.02
2416 2719 0.107831 CCAAGAGGTCACGGGTTCAA 59.892 55.000 0.00 0.00 0.00 2.69
2417 2720 1.752198 CCAAGAGGTCACGGGTTCA 59.248 57.895 0.00 0.00 0.00 3.18
2418 2721 4.695560 CCAAGAGGTCACGGGTTC 57.304 61.111 0.00 0.00 0.00 3.62
2431 2734 1.954528 CTGCTGCCTTGTGACCAAG 59.045 57.895 0.00 0.00 46.33 3.61
2432 2735 2.195567 GCTGCTGCCTTGTGACCAA 61.196 57.895 3.85 0.00 0.00 3.67
2433 2736 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
2434 2737 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
2435 2738 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
2436 2739 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
2437 2740 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
2438 2741 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
2439 2742 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
2440 2743 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
2441 2744 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
2442 2745 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
2447 2750 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
2448 2751 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2449 2752 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2450 2753 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2451 2754 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2452 2755 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2453 2756 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2461 2764 3.567579 TTGAAGGGGAGCCTTGGCG 62.568 63.158 5.95 0.00 0.00 5.69
2462 2765 0.615827 ATTTGAAGGGGAGCCTTGGC 60.616 55.000 2.97 2.97 0.00 4.52
2463 2766 1.006400 AGATTTGAAGGGGAGCCTTGG 59.994 52.381 0.00 0.00 0.00 3.61
2464 2767 2.521547 AGATTTGAAGGGGAGCCTTG 57.478 50.000 0.00 0.00 0.00 3.61
2465 2768 3.593780 ACTTAGATTTGAAGGGGAGCCTT 59.406 43.478 0.00 0.00 0.00 4.35
2466 2769 3.193782 ACTTAGATTTGAAGGGGAGCCT 58.806 45.455 0.00 0.00 0.00 4.58
2467 2770 3.653835 ACTTAGATTTGAAGGGGAGCC 57.346 47.619 0.00 0.00 0.00 4.70
2468 2771 3.129462 GCAACTTAGATTTGAAGGGGAGC 59.871 47.826 0.00 0.00 0.00 4.70
2469 2772 4.156739 GTGCAACTTAGATTTGAAGGGGAG 59.843 45.833 0.00 0.00 0.00 4.30
2470 2773 4.079253 GTGCAACTTAGATTTGAAGGGGA 58.921 43.478 0.00 0.00 0.00 4.81
2471 2774 3.826157 TGTGCAACTTAGATTTGAAGGGG 59.174 43.478 0.00 0.00 38.04 4.79
2472 2775 4.616835 GCTGTGCAACTTAGATTTGAAGGG 60.617 45.833 0.00 0.00 38.04 3.95
2473 2776 4.022935 TGCTGTGCAACTTAGATTTGAAGG 60.023 41.667 0.00 0.00 38.04 3.46
2474 2777 5.112220 TGCTGTGCAACTTAGATTTGAAG 57.888 39.130 0.00 0.00 38.04 3.02
2477 2780 4.801891 ACATGCTGTGCAACTTAGATTTG 58.198 39.130 0.00 0.00 43.62 2.32
2482 2785 3.902261 TGAACATGCTGTGCAACTTAG 57.098 42.857 0.00 0.00 43.62 2.18
2529 2832 2.030274 GCAATGAGCACCCTACGTTTTT 60.030 45.455 0.00 0.00 44.79 1.94
2542 2846 2.667473 AAATGGCTGAAGCAATGAGC 57.333 45.000 4.43 0.00 44.36 4.26
2588 2893 5.631026 CACCTGATATGCAACAGTACAAAC 58.369 41.667 14.54 0.00 32.93 2.93
2608 2913 2.159296 AGACAAAAAGAACCAACGCACC 60.159 45.455 0.00 0.00 0.00 5.01
2611 2916 3.414549 TCAGACAAAAAGAACCAACGC 57.585 42.857 0.00 0.00 0.00 4.84
2636 2953 0.098905 CATCAGCAGCAGCACACATC 59.901 55.000 3.17 0.00 45.49 3.06
2703 3023 5.276270 CGCTCCCAATTTGATTTATGACAG 58.724 41.667 0.00 0.00 0.00 3.51
2759 3079 3.242673 ACTCCGTCGTATTCTTTCGCTAG 60.243 47.826 0.00 0.00 0.00 3.42
2888 4880 4.250464 TCATTGAGAAACGGGATGTGTAC 58.750 43.478 0.00 0.00 0.00 2.90
2906 4898 3.868077 GCGTTAGATGCAGACTCTTCATT 59.132 43.478 0.00 0.00 0.00 2.57
2908 4900 2.417379 GGCGTTAGATGCAGACTCTTCA 60.417 50.000 0.00 0.00 0.00 3.02
3217 8766 1.669115 CACCTCCTTGTGCTCCACG 60.669 63.158 0.00 0.00 37.14 4.94
3333 8889 4.699522 GGACGCGGGTTCAGGCTT 62.700 66.667 12.47 0.00 0.00 4.35
3347 8903 2.357034 TGCGACTCCAAAGCGGAC 60.357 61.111 0.00 0.00 39.64 4.79
3349 8905 1.080093 TAGTGCGACTCCAAAGCGG 60.080 57.895 0.00 0.00 0.00 5.52
3404 8960 1.135689 GCTTGCACATAGTCGGGTTTG 60.136 52.381 0.00 0.00 0.00 2.93
3460 9017 3.222603 GGAGAATGTGGGTGTCAAACTT 58.777 45.455 0.00 0.00 0.00 2.66
3519 9076 1.493861 CCCTCTCATCAGCAAGGAGA 58.506 55.000 3.87 3.87 36.35 3.71
3525 9082 3.092511 GGGCCCCTCTCATCAGCA 61.093 66.667 12.23 0.00 0.00 4.41
3561 9118 5.807011 CCTTGTCCAAAAGTTTTCAGACTTG 59.193 40.000 20.64 15.18 39.68 3.16
3569 9126 5.163311 CCCAGAATCCTTGTCCAAAAGTTTT 60.163 40.000 0.00 0.00 0.00 2.43
3704 9261 1.210722 CCTACCTTTGGAGAAGAGCCC 59.789 57.143 0.00 0.00 0.00 5.19
3795 9353 1.358402 CCTCAGATCCTGCTCGTCG 59.642 63.158 0.00 0.00 0.00 5.12
3907 9476 5.488919 TCCTATTGACTCCAAGGTGAGATTT 59.511 40.000 0.00 0.00 35.48 2.17
3908 9477 5.032846 TCCTATTGACTCCAAGGTGAGATT 58.967 41.667 0.00 0.00 35.48 2.40
3909 9478 4.624913 TCCTATTGACTCCAAGGTGAGAT 58.375 43.478 0.00 0.00 35.48 2.75
3911 9480 4.026744 TCTCCTATTGACTCCAAGGTGAG 58.973 47.826 0.00 0.00 35.48 3.51
3927 9496 2.034939 TGTGCTTTTTCGTCGTCTCCTA 59.965 45.455 0.00 0.00 0.00 2.94
3929 9498 1.214367 TGTGCTTTTTCGTCGTCTCC 58.786 50.000 0.00 0.00 0.00 3.71
3950 9519 5.536161 ACCATTGTTATGCTTTAGCCTATGG 59.464 40.000 13.33 13.33 41.18 2.74
3966 9535 5.779771 AGTGATCAATTACCCAACCATTGTT 59.220 36.000 0.00 0.00 34.14 2.83
3983 9552 4.437682 AGTTTCCTTCACCAAGTGATCA 57.562 40.909 0.00 0.00 42.40 2.92
4034 9605 0.774276 TTGTTGCATGACCCCTACCA 59.226 50.000 0.00 0.00 0.00 3.25
4035 9606 1.173913 GTTGTTGCATGACCCCTACC 58.826 55.000 0.00 0.00 0.00 3.18
4036 9607 1.173913 GGTTGTTGCATGACCCCTAC 58.826 55.000 0.00 0.00 0.00 3.18
4037 9608 0.039035 GGGTTGTTGCATGACCCCTA 59.961 55.000 17.59 0.00 45.94 3.53
4038 9609 1.228862 GGGTTGTTGCATGACCCCT 60.229 57.895 17.59 0.00 45.94 4.79
4039 9610 3.376546 GGGTTGTTGCATGACCCC 58.623 61.111 17.59 8.45 45.94 4.95
4041 9612 1.327303 TCTTGGGTTGTTGCATGACC 58.673 50.000 0.00 5.36 0.00 4.02
4042 9613 3.665745 AATCTTGGGTTGTTGCATGAC 57.334 42.857 0.00 0.00 0.00 3.06
4043 9614 4.686191 AAAATCTTGGGTTGTTGCATGA 57.314 36.364 0.00 0.00 0.00 3.07
4044 9615 7.299586 CAATTAAAATCTTGGGTTGTTGCATG 58.700 34.615 0.00 0.00 0.00 4.06
4045 9616 6.430616 CCAATTAAAATCTTGGGTTGTTGCAT 59.569 34.615 0.00 0.00 38.60 3.96
4046 9617 5.762218 CCAATTAAAATCTTGGGTTGTTGCA 59.238 36.000 0.00 0.00 38.60 4.08
4047 9618 6.239908 CCAATTAAAATCTTGGGTTGTTGC 57.760 37.500 0.00 0.00 38.60 4.17
4157 9729 2.099652 CTGGGTGCCTTGTCACTCGA 62.100 60.000 0.00 0.00 40.26 4.04
4210 9782 4.727507 TGTGTTAATGCCGCCATATTTT 57.272 36.364 0.00 0.00 0.00 1.82
4216 9788 1.339535 TGAGATGTGTTAATGCCGCCA 60.340 47.619 0.00 0.00 0.00 5.69
4230 12414 3.044156 TCTCCCCCTCTTGAATGAGATG 58.956 50.000 0.00 0.00 36.23 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.