Multiple sequence alignment - TraesCS5A01G523600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G523600 chr5A 100.000 6093 0 0 1 6093 684656974 684650882 0.000000e+00 11252.0
1 TraesCS5A01G523600 chr5A 86.636 434 38 8 5180 5595 552657923 552658354 4.300000e-126 462.0
2 TraesCS5A01G523600 chr5A 84.564 149 20 3 73 218 191040719 191040571 1.770000e-30 145.0
3 TraesCS5A01G523600 chr4B 85.858 2482 200 71 4 2404 646122601 646120190 0.000000e+00 2499.0
4 TraesCS5A01G523600 chr4B 87.326 1365 93 41 3593 4918 646118601 646117278 0.000000e+00 1489.0
5 TraesCS5A01G523600 chr4B 84.010 838 73 29 2781 3601 646119697 646118904 0.000000e+00 749.0
6 TraesCS5A01G523600 chr4B 86.325 234 19 8 5866 6093 646117152 646116926 6.100000e-60 243.0
7 TraesCS5A01G523600 chr4B 89.888 89 7 2 4919 5006 449229890 449229803 4.990000e-21 113.0
8 TraesCS5A01G523600 chr4B 86.420 81 10 1 4919 4998 600606466 600606546 3.030000e-13 87.9
9 TraesCS5A01G523600 chr4B 89.130 46 5 0 1316 1361 605453609 605453564 2.370000e-04 58.4
10 TraesCS5A01G523600 chr4D 86.750 2000 113 63 620 2543 502021705 502019782 0.000000e+00 2085.0
11 TraesCS5A01G523600 chr4D 89.794 1411 89 23 3530 4918 502018424 502017047 0.000000e+00 1757.0
12 TraesCS5A01G523600 chr4D 81.053 570 34 30 2708 3253 502019406 502018887 2.660000e-103 387.0
13 TraesCS5A01G523600 chr4D 88.489 278 16 3 3256 3532 502018784 502018522 7.620000e-84 322.0
14 TraesCS5A01G523600 chr4D 83.544 158 12 8 5603 5758 449047040 449047185 1.070000e-27 135.0
15 TraesCS5A01G523600 chr7A 94.767 688 24 4 4920 5598 300856513 300855829 0.000000e+00 1061.0
16 TraesCS5A01G523600 chr7A 90.272 699 36 10 4920 5598 569613986 569613300 0.000000e+00 885.0
17 TraesCS5A01G523600 chr7A 95.238 147 7 0 5612 5758 569613317 569613171 3.670000e-57 233.0
18 TraesCS5A01G523600 chr7A 93.289 149 7 2 5610 5758 300855848 300855703 3.700000e-52 217.0
19 TraesCS5A01G523600 chr7A 87.248 149 9 5 5610 5758 157203112 157203250 1.760000e-35 161.0
20 TraesCS5A01G523600 chr7B 91.691 698 38 5 4918 5598 92336656 92335962 0.000000e+00 950.0
21 TraesCS5A01G523600 chr7B 81.439 431 43 14 5195 5598 707860010 707859590 9.860000e-83 318.0
22 TraesCS5A01G523600 chr7B 80.126 317 50 11 70 382 743393007 743393314 2.210000e-54 224.0
23 TraesCS5A01G523600 chr7B 94.521 146 5 1 5611 5756 92335980 92335838 7.950000e-54 222.0
24 TraesCS5A01G523600 chr7B 91.411 163 6 3 4919 5081 74597252 74597406 3.700000e-52 217.0
25 TraesCS5A01G523600 chr1A 91.198 693 29 10 4919 5594 508866606 508865929 0.000000e+00 913.0
26 TraesCS5A01G523600 chr1A 92.857 70 4 1 77 146 528062747 528062815 3.890000e-17 100.0
27 TraesCS5A01G523600 chrUn 89.165 563 40 11 5042 5592 87128735 87129288 0.000000e+00 682.0
28 TraesCS5A01G523600 chrUn 94.301 193 9 2 4919 5111 68758529 68758339 1.660000e-75 294.0
29 TraesCS5A01G523600 chrUn 88.832 197 11 2 5265 5452 68757847 68757653 1.320000e-56 231.0
30 TraesCS5A01G523600 chrUn 96.296 135 3 1 4918 5050 87128427 87128561 2.860000e-53 220.0
31 TraesCS5A01G523600 chrUn 94.505 91 5 0 5667 5757 87129291 87129381 2.290000e-29 141.0
32 TraesCS5A01G523600 chr5D 86.624 628 41 22 5008 5598 438685782 438685161 0.000000e+00 654.0
33 TraesCS5A01G523600 chr5D 82.263 327 47 9 63 382 331325341 331325019 7.780000e-69 272.0
34 TraesCS5A01G523600 chr5D 81.081 222 34 6 17 233 177679786 177680004 2.920000e-38 171.0
35 TraesCS5A01G523600 chr5D 83.439 157 14 6 5603 5758 438685186 438685041 1.070000e-27 135.0
36 TraesCS5A01G523600 chr2B 85.390 616 46 19 5008 5598 141153838 141153242 3.140000e-167 599.0
37 TraesCS5A01G523600 chr3A 84.704 608 53 18 5008 5594 707916842 707916254 6.850000e-159 571.0
38 TraesCS5A01G523600 chr3A 85.945 434 34 12 5180 5595 32412320 32412744 7.250000e-119 438.0
39 TraesCS5A01G523600 chr4A 84.150 612 56 18 5008 5598 575729725 575730316 6.900000e-154 555.0
40 TraesCS5A01G523600 chr4A 81.761 159 14 7 5602 5758 540021514 540021369 1.070000e-22 119.0
41 TraesCS5A01G523600 chr1B 82.120 632 55 28 5008 5598 116258705 116259319 7.100000e-134 488.0
42 TraesCS5A01G523600 chr6A 86.406 434 39 9 5180 5595 450088680 450088249 2.000000e-124 457.0
43 TraesCS5A01G523600 chr5B 90.421 261 18 5 5008 5262 620763049 620762790 2.720000e-88 337.0
44 TraesCS5A01G523600 chr5B 90.421 261 18 3 5008 5262 620764273 620764014 2.720000e-88 337.0
45 TraesCS5A01G523600 chr2A 82.595 316 45 7 75 382 733624273 733623960 2.800000e-68 270.0
46 TraesCS5A01G523600 chr2A 86.792 106 14 0 76 181 733624603 733624498 1.070000e-22 119.0
47 TraesCS5A01G523600 chr7D 78.451 297 47 12 98 384 538375012 538375301 1.750000e-40 178.0
48 TraesCS5A01G523600 chr2D 83.544 158 12 7 5603 5758 598078981 598079126 1.070000e-27 135.0
49 TraesCS5A01G523600 chr3D 76.147 218 42 8 168 383 608765577 608765786 8.350000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G523600 chr5A 684650882 684656974 6092 True 11252.000000 11252 100.00000 1 6093 1 chr5A.!!$R2 6092
1 TraesCS5A01G523600 chr4B 646116926 646122601 5675 True 1245.000000 2499 85.87975 4 6093 4 chr4B.!!$R3 6089
2 TraesCS5A01G523600 chr4D 502017047 502021705 4658 True 1137.750000 2085 86.52150 620 4918 4 chr4D.!!$R1 4298
3 TraesCS5A01G523600 chr7A 300855703 300856513 810 True 639.000000 1061 94.02800 4920 5758 2 chr7A.!!$R1 838
4 TraesCS5A01G523600 chr7A 569613171 569613986 815 True 559.000000 885 92.75500 4920 5758 2 chr7A.!!$R2 838
5 TraesCS5A01G523600 chr7B 92335838 92336656 818 True 586.000000 950 93.10600 4918 5756 2 chr7B.!!$R2 838
6 TraesCS5A01G523600 chr1A 508865929 508866606 677 True 913.000000 913 91.19800 4919 5594 1 chr1A.!!$R1 675
7 TraesCS5A01G523600 chrUn 87128427 87129381 954 False 347.666667 682 93.32200 4918 5757 3 chrUn.!!$F1 839
8 TraesCS5A01G523600 chrUn 68757653 68758529 876 True 262.500000 294 91.56650 4919 5452 2 chrUn.!!$R1 533
9 TraesCS5A01G523600 chr5D 438685041 438685782 741 True 394.500000 654 85.03150 5008 5758 2 chr5D.!!$R2 750
10 TraesCS5A01G523600 chr2B 141153242 141153838 596 True 599.000000 599 85.39000 5008 5598 1 chr2B.!!$R1 590
11 TraesCS5A01G523600 chr3A 707916254 707916842 588 True 571.000000 571 84.70400 5008 5594 1 chr3A.!!$R1 586
12 TraesCS5A01G523600 chr4A 575729725 575730316 591 False 555.000000 555 84.15000 5008 5598 1 chr4A.!!$F1 590
13 TraesCS5A01G523600 chr1B 116258705 116259319 614 False 488.000000 488 82.12000 5008 5598 1 chr1B.!!$F1 590
14 TraesCS5A01G523600 chr5B 620762790 620764273 1483 True 337.000000 337 90.42100 5008 5262 2 chr5B.!!$R1 254

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
367 369 0.108585 AGCTCGTGTGGAACCATGTT 59.891 50.0 0.00 0.0 34.36 2.71 F
1824 1859 0.107752 TCCATTGCTCTGCACGCATA 60.108 50.0 6.75 0.2 38.71 3.14 F
2577 2809 0.109179 GTGATGTACGTACGGGCACA 60.109 55.0 26.58 19.2 0.00 4.57 F
3631 4610 0.170561 GCTCGGACACGACACTATGT 59.829 55.0 0.00 0.0 45.59 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 1979 0.387239 TGCATAGCGATCGATCACCG 60.387 55.000 24.40 12.93 40.25 4.94 R
3233 3694 0.036022 ACACAGGGAAGAAGAGCAGC 59.964 55.000 0.00 0.00 0.00 5.25 R
3726 4712 0.322816 CTGTGGTCCAGTCCAATGGG 60.323 60.000 0.00 0.00 41.01 4.00 R
5364 7017 1.000396 ATCTTTGGCTGGACCCTGC 60.000 57.895 9.12 9.12 37.83 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 91 4.998033 TGTTGTTTTAGCATACATGGTCGA 59.002 37.500 0.00 0.00 39.52 4.20
103 104 1.830279 TGGTCGACCATTCTACTCGT 58.170 50.000 33.23 0.00 42.01 4.18
108 109 4.280461 GTCGACCATTCTACTCGTGTATG 58.720 47.826 3.51 0.00 0.00 2.39
111 112 4.970611 CGACCATTCTACTCGTGTATGAAG 59.029 45.833 0.00 0.00 0.00 3.02
154 155 3.891422 TGGCATTCTAGGCAAAAATGG 57.109 42.857 3.96 0.00 41.47 3.16
187 188 8.795786 TGTGCTATATTTGAAAACACTGTTTC 57.204 30.769 7.62 3.11 37.89 2.78
202 203 5.365895 ACACTGTTTCAAGGACTAGTAAGGT 59.634 40.000 0.00 0.00 0.00 3.50
203 204 5.927115 CACTGTTTCAAGGACTAGTAAGGTC 59.073 44.000 0.00 0.00 0.00 3.85
204 205 5.130292 TGTTTCAAGGACTAGTAAGGTCG 57.870 43.478 0.00 0.00 34.82 4.79
219 220 7.845066 AGTAAGGTCGGATTGTATTTTTCTC 57.155 36.000 0.00 0.00 0.00 2.87
220 221 7.391620 AGTAAGGTCGGATTGTATTTTTCTCA 58.608 34.615 0.00 0.00 0.00 3.27
234 235 9.362539 TGTATTTTTCTCAACTACGGAATACTC 57.637 33.333 0.00 0.00 32.67 2.59
241 242 6.032956 TCAACTACGGAATACTCATGTGTT 57.967 37.500 5.63 0.00 0.00 3.32
243 244 7.778083 TCAACTACGGAATACTCATGTGTTAT 58.222 34.615 5.63 0.00 0.00 1.89
249 250 6.761714 ACGGAATACTCATGTGTTATTCCTTC 59.238 38.462 25.80 14.22 42.26 3.46
250 251 6.986817 CGGAATACTCATGTGTTATTCCTTCT 59.013 38.462 25.80 2.18 42.26 2.85
256 257 6.369065 ACTCATGTGTTATTCCTTCTCGAAAC 59.631 38.462 0.00 0.00 0.00 2.78
296 297 5.110814 TGGTCGACCAAATTTGATATCCT 57.889 39.130 34.60 0.00 44.35 3.24
353 355 8.642885 GTTGAATATACTATTCATGTGAGCTCG 58.357 37.037 9.64 0.00 37.79 5.03
358 360 1.730501 ATTCATGTGAGCTCGTGTGG 58.269 50.000 9.64 0.00 0.00 4.17
367 369 0.108585 AGCTCGTGTGGAACCATGTT 59.891 50.000 0.00 0.00 34.36 2.71
387 389 7.326789 CCATGTTCATCTGTGTATTTTTGTCAC 59.673 37.037 0.00 0.00 0.00 3.67
404 407 6.546972 TTGTCACGTAATGCAGAAAATGTA 57.453 33.333 0.00 0.00 0.00 2.29
411 414 8.698854 CACGTAATGCAGAAAATGTATTTGTTT 58.301 29.630 0.00 0.00 40.88 2.83
476 479 4.603985 CAACATCCGATCATTGACATTGG 58.396 43.478 0.00 0.00 0.00 3.16
480 483 3.534554 TCCGATCATTGACATTGGACAG 58.465 45.455 0.00 0.00 29.84 3.51
517 520 7.147143 TCTATCGCCTGAAACATATACTCTC 57.853 40.000 0.00 0.00 0.00 3.20
518 521 4.585955 TCGCCTGAAACATATACTCTCC 57.414 45.455 0.00 0.00 0.00 3.71
519 522 3.321111 TCGCCTGAAACATATACTCTCCC 59.679 47.826 0.00 0.00 0.00 4.30
532 535 7.236847 ACATATACTCTCCCCATCCGAAAATAA 59.763 37.037 0.00 0.00 0.00 1.40
535 538 6.509523 ACTCTCCCCATCCGAAAATAATTA 57.490 37.500 0.00 0.00 0.00 1.40
541 544 7.522542 TCCCCATCCGAAAATAATTATCAGAA 58.477 34.615 0.00 0.00 0.00 3.02
559 562 7.843490 ATCAGAAAAATGGAATGCATTTCAG 57.157 32.000 24.25 10.05 35.94 3.02
560 563 6.761312 TCAGAAAAATGGAATGCATTTCAGT 58.239 32.000 24.25 19.83 35.94 3.41
561 564 7.894708 TCAGAAAAATGGAATGCATTTCAGTA 58.105 30.769 24.25 4.39 35.94 2.74
562 565 8.030692 TCAGAAAAATGGAATGCATTTCAGTAG 58.969 33.333 24.25 11.05 35.94 2.57
564 567 8.031277 AGAAAAATGGAATGCATTTCAGTAGTC 58.969 33.333 24.25 20.22 35.94 2.59
568 579 6.544928 TGGAATGCATTTCAGTAGTCTAGA 57.455 37.500 16.76 0.00 35.94 2.43
603 614 7.534085 TTTATCCATGTGTTCGACAAGTATC 57.466 36.000 0.00 0.00 38.36 2.24
605 616 5.147330 TCCATGTGTTCGACAAGTATCTT 57.853 39.130 0.00 0.00 38.36 2.40
606 617 5.547465 TCCATGTGTTCGACAAGTATCTTT 58.453 37.500 0.00 0.00 38.36 2.52
607 618 5.408299 TCCATGTGTTCGACAAGTATCTTTG 59.592 40.000 0.00 0.00 38.36 2.77
614 626 3.119602 TCGACAAGTATCTTTGGACGGAG 60.120 47.826 0.00 0.00 34.92 4.63
616 628 3.170717 ACAAGTATCTTTGGACGGAGGA 58.829 45.455 0.00 0.00 32.32 3.71
625 637 8.968969 GTATCTTTGGACGGAGGAAGTATATAT 58.031 37.037 0.00 0.00 0.00 0.86
627 639 8.577048 TCTTTGGACGGAGGAAGTATATATAG 57.423 38.462 0.00 0.00 0.00 1.31
632 644 9.021807 TGGACGGAGGAAGTATATATAGAAAAG 57.978 37.037 0.00 0.00 0.00 2.27
712 724 3.762992 ACATGACGCGCGTTCACG 61.763 61.111 38.03 27.69 43.27 4.35
727 739 5.108480 CGCGTTCACGTTTTCTATAGATACC 60.108 44.000 2.58 0.00 42.22 2.73
746 758 8.964476 AGATACCAGATTATCATGTTTTCGTT 57.036 30.769 0.00 0.00 31.72 3.85
747 759 9.396022 AGATACCAGATTATCATGTTTTCGTTT 57.604 29.630 0.00 0.00 31.72 3.60
776 792 9.961265 TCATACACTTATATACTCCAAAAGTCG 57.039 33.333 0.00 0.00 39.55 4.18
860 880 8.895737 TGGTTGATATATAATCGCGTAGTATCA 58.104 33.333 5.77 10.03 0.00 2.15
911 931 2.613474 CGGTGACCACGGGAAAAAGATA 60.613 50.000 1.11 0.00 0.00 1.98
923 943 3.127030 GGAAAAAGATACAGCGGGAACAG 59.873 47.826 0.00 0.00 0.00 3.16
927 947 0.811616 GATACAGCGGGAACAGCCAG 60.812 60.000 0.00 0.00 38.95 4.85
994 1014 5.012148 TCCAACTGCTTCTTCTACTTAAGCT 59.988 40.000 1.29 0.00 44.66 3.74
1065 1089 1.316266 CCTCCCCATCACTCCTCCT 59.684 63.158 0.00 0.00 0.00 3.69
1066 1090 0.327000 CCTCCCCATCACTCCTCCTT 60.327 60.000 0.00 0.00 0.00 3.36
1079 1103 1.113788 CCTCCTTCTCAGGCTCTCAG 58.886 60.000 0.00 0.00 40.58 3.35
1150 1178 3.762247 AGCCGGCGCATGCATTTT 61.762 55.556 23.20 0.00 45.35 1.82
1185 1213 4.379243 AGCTCGTCGGCACCAAGG 62.379 66.667 8.15 0.00 34.17 3.61
1349 1377 4.135153 CCTGCCCGTCGTCCTCTG 62.135 72.222 0.00 0.00 0.00 3.35
1350 1378 3.062466 CTGCCCGTCGTCCTCTGA 61.062 66.667 0.00 0.00 0.00 3.27
1351 1379 3.343788 CTGCCCGTCGTCCTCTGAC 62.344 68.421 0.00 0.00 38.18 3.51
1477 1505 3.474570 CTCTTCCCCAGGAGCCCG 61.475 72.222 0.00 0.00 31.21 6.13
1752 1780 4.146640 CGTCGACGCAGATGACAA 57.853 55.556 26.59 0.00 35.62 3.18
1797 1825 1.305718 AGGTGAGTCCTCCAGCTCC 60.306 63.158 4.63 0.00 44.42 4.70
1799 1827 2.363018 TGAGTCCTCCAGCTCCGG 60.363 66.667 0.00 0.00 0.00 5.14
1800 1828 3.844090 GAGTCCTCCAGCTCCGGC 61.844 72.222 0.00 0.00 39.06 6.13
1818 1853 1.001764 CCCAGTCCATTGCTCTGCA 60.002 57.895 0.00 0.00 36.47 4.41
1819 1854 1.310933 CCCAGTCCATTGCTCTGCAC 61.311 60.000 0.00 0.00 38.71 4.57
1824 1859 0.107752 TCCATTGCTCTGCACGCATA 60.108 50.000 6.75 0.20 38.71 3.14
1886 1921 3.192230 CCCGCGCGTTGAATGCTA 61.192 61.111 29.95 0.00 0.00 3.49
1888 1923 2.348551 CGCGCGTTGAATGCTACG 60.349 61.111 24.19 3.03 44.22 3.51
1910 1945 4.094911 GTCAATCATTGCGCGATTTGTTA 58.905 39.130 12.10 1.95 30.65 2.41
1939 1979 3.236980 GCGTCGTAAATACAGTCGAGTTC 59.763 47.826 0.00 0.00 33.09 3.01
1957 1997 0.109735 TCGGTGATCGATCGCTATGC 60.110 55.000 31.66 17.80 43.74 3.14
1958 1998 0.387239 CGGTGATCGATCGCTATGCA 60.387 55.000 31.66 7.69 42.43 3.96
2037 2097 8.430063 CAAAAATTCGAAAAATCTCCACATCAG 58.570 33.333 0.00 0.00 0.00 2.90
2039 2099 5.862924 TTCGAAAAATCTCCACATCAGTC 57.137 39.130 0.00 0.00 0.00 3.51
2040 2100 4.893608 TCGAAAAATCTCCACATCAGTCA 58.106 39.130 0.00 0.00 0.00 3.41
2041 2101 4.690748 TCGAAAAATCTCCACATCAGTCAC 59.309 41.667 0.00 0.00 0.00 3.67
2042 2102 4.692625 CGAAAAATCTCCACATCAGTCACT 59.307 41.667 0.00 0.00 0.00 3.41
2045 2105 5.350504 AAATCTCCACATCAGTCACTAGG 57.649 43.478 0.00 0.00 0.00 3.02
2046 2106 2.739943 TCTCCACATCAGTCACTAGGG 58.260 52.381 0.00 0.00 0.00 3.53
2092 2175 9.530129 CTTGTGTTACGAAATTTAATCACTCTC 57.470 33.333 0.00 0.00 0.00 3.20
2125 2208 0.238289 CGATTTTCTGCAACGCTGGT 59.762 50.000 0.00 0.00 0.00 4.00
2128 2211 1.317613 TTTTCTGCAACGCTGGTGAT 58.682 45.000 0.00 0.00 0.00 3.06
2172 2261 0.534652 CGAGTAGAGGTCGTAGGGGG 60.535 65.000 0.00 0.00 32.62 5.40
2192 2281 1.962100 GACTCAAGTATAGGGACGGGG 59.038 57.143 0.00 0.00 0.00 5.73
2193 2282 0.680061 CTCAAGTATAGGGACGGGGC 59.320 60.000 0.00 0.00 0.00 5.80
2194 2283 1.111116 TCAAGTATAGGGACGGGGCG 61.111 60.000 0.00 0.00 0.00 6.13
2195 2284 1.835712 AAGTATAGGGACGGGGCGG 60.836 63.158 0.00 0.00 0.00 6.13
2196 2285 3.308705 GTATAGGGACGGGGCGGG 61.309 72.222 0.00 0.00 0.00 6.13
2265 2354 0.377203 TCGATGTGATGGAGACGACG 59.623 55.000 0.00 0.00 0.00 5.12
2266 2355 0.377203 CGATGTGATGGAGACGACGA 59.623 55.000 0.00 0.00 0.00 4.20
2267 2356 1.828832 GATGTGATGGAGACGACGAC 58.171 55.000 0.00 0.00 0.00 4.34
2273 2362 2.008329 GATGGAGACGACGACTAGTGT 58.992 52.381 0.00 0.00 0.00 3.55
2275 2364 3.044235 TGGAGACGACGACTAGTGTAA 57.956 47.619 0.00 0.00 0.00 2.41
2334 2425 3.511540 TCCTTGTCAACTCGAGTCATCAT 59.488 43.478 20.33 0.00 0.00 2.45
2349 2440 1.956629 ATCATCCACGGACCGACACC 61.957 60.000 23.38 0.00 0.00 4.16
2363 2462 4.063967 CACCCGGCTGACTGCGTA 62.064 66.667 0.00 0.00 44.05 4.42
2373 2472 1.461127 CTGACTGCGTAAACAGCTTCC 59.539 52.381 0.00 0.00 41.60 3.46
2375 2474 1.461127 GACTGCGTAAACAGCTTCCAG 59.539 52.381 0.00 0.00 41.60 3.86
2428 2604 3.646715 CCCTCCCGGAAAGGTGCA 61.647 66.667 18.32 0.00 38.74 4.57
2501 2694 1.402984 GGTGCTTCAGTCTAGACACCG 60.403 57.143 24.44 12.38 38.32 4.94
2502 2695 1.540267 GTGCTTCAGTCTAGACACCGA 59.460 52.381 24.44 14.41 0.00 4.69
2545 2774 8.260099 AGGGGAAGTATAGACAAGTTATTACC 57.740 38.462 0.00 0.00 0.00 2.85
2554 2786 4.019591 AGACAAGTTATTACCCCCACTCAC 60.020 45.833 0.00 0.00 0.00 3.51
2556 2788 1.835531 AGTTATTACCCCCACTCACCG 59.164 52.381 0.00 0.00 0.00 4.94
2577 2809 0.109179 GTGATGTACGTACGGGCACA 60.109 55.000 26.58 19.20 0.00 4.57
2604 2840 1.220477 GGAGTGAAGAGGGAGCAGC 59.780 63.158 0.00 0.00 0.00 5.25
2669 2907 2.431771 TGCGGTGACATCGGTTCG 60.432 61.111 10.65 0.00 0.00 3.95
2702 2954 4.402474 ACCAATTTATAACAGCCAGCTTCC 59.598 41.667 0.00 0.00 0.00 3.46
2730 3137 3.181462 TGCTGATTCAAGACGGCATCTAT 60.181 43.478 0.00 0.00 42.35 1.98
2731 3138 3.431572 GCTGATTCAAGACGGCATCTATC 59.568 47.826 0.00 0.00 36.27 2.08
2732 3139 4.798924 GCTGATTCAAGACGGCATCTATCT 60.799 45.833 0.00 0.00 36.27 1.98
2733 3140 5.565637 GCTGATTCAAGACGGCATCTATCTA 60.566 44.000 0.00 0.00 36.27 1.98
2734 3141 5.773575 TGATTCAAGACGGCATCTATCTAC 58.226 41.667 0.00 0.00 36.27 2.59
2736 3143 3.833732 TCAAGACGGCATCTATCTACCT 58.166 45.455 0.00 0.00 36.27 3.08
2781 3222 2.651361 CTTCACCGCTCGTGGAGT 59.349 61.111 3.09 0.00 42.52 3.85
2782 3223 1.734477 CTTCACCGCTCGTGGAGTG 60.734 63.158 3.09 0.00 42.52 3.51
2822 3263 4.377431 GCAGATGAAGTGTACTTTTCCGTG 60.377 45.833 0.00 0.00 36.11 4.94
2825 3266 3.199677 TGAAGTGTACTTTTCCGTGGTG 58.800 45.455 0.00 0.00 36.11 4.17
2850 3299 3.442996 GCGTCTTGCTCAGGTATGT 57.557 52.632 0.00 0.00 41.73 2.29
2851 3300 2.579207 GCGTCTTGCTCAGGTATGTA 57.421 50.000 0.00 0.00 41.73 2.29
2852 3301 3.099267 GCGTCTTGCTCAGGTATGTAT 57.901 47.619 0.00 0.00 41.73 2.29
2878 3327 2.357034 GTGGCACCGACACGTCAT 60.357 61.111 6.29 0.00 29.47 3.06
2881 3330 2.738521 GCACCGACACGTCATGCT 60.739 61.111 13.49 0.00 37.96 3.79
2923 3372 2.718731 CTGCCACGAAAACGCCAA 59.281 55.556 0.00 0.00 0.00 4.52
2927 3376 2.426752 CACGAAAACGCCAAGCCG 60.427 61.111 0.00 0.00 0.00 5.52
2948 3397 1.984570 TTCTCTCCTCCACAGGCCG 60.985 63.158 0.00 0.00 40.12 6.13
3131 3592 8.135529 CCGTCAGAAAATACTGTATGTAGATCA 58.864 37.037 0.22 0.00 38.79 2.92
3141 3602 7.962995 ACTGTATGTAGATCAAGGAGAAGAA 57.037 36.000 0.00 0.00 0.00 2.52
3143 3604 6.810911 TGTATGTAGATCAAGGAGAAGAAGC 58.189 40.000 0.00 0.00 0.00 3.86
3144 3605 4.744795 TGTAGATCAAGGAGAAGAAGCC 57.255 45.455 0.00 0.00 0.00 4.35
3145 3606 2.977772 AGATCAAGGAGAAGAAGCCG 57.022 50.000 0.00 0.00 0.00 5.52
3147 3608 3.037549 AGATCAAGGAGAAGAAGCCGAT 58.962 45.455 0.00 0.00 0.00 4.18
3148 3609 2.969628 TCAAGGAGAAGAAGCCGATC 57.030 50.000 0.00 0.00 0.00 3.69
3149 3610 1.482593 TCAAGGAGAAGAAGCCGATCC 59.517 52.381 0.00 0.00 0.00 3.36
3151 3612 1.573108 AGGAGAAGAAGCCGATCCAA 58.427 50.000 0.00 0.00 32.21 3.53
3153 3614 1.657822 GAGAAGAAGCCGATCCAACC 58.342 55.000 0.00 0.00 0.00 3.77
3154 3615 0.984230 AGAAGAAGCCGATCCAACCA 59.016 50.000 0.00 0.00 0.00 3.67
3155 3616 1.087501 GAAGAAGCCGATCCAACCAC 58.912 55.000 0.00 0.00 0.00 4.16
3177 3638 0.800012 CAAATGGGTTGGGACGTACG 59.200 55.000 15.01 15.01 33.18 3.67
3233 3694 3.132925 CTGTTTGGCATGTCCTTTTTGG 58.867 45.455 0.00 0.00 35.26 3.28
3234 3695 1.872952 GTTTGGCATGTCCTTTTTGGC 59.127 47.619 0.00 0.00 36.55 4.52
3253 3714 1.276421 GCTGCTCTTCTTCCCTGTGTA 59.724 52.381 0.00 0.00 0.00 2.90
3254 3715 2.093235 GCTGCTCTTCTTCCCTGTGTAT 60.093 50.000 0.00 0.00 0.00 2.29
3295 3857 6.417191 TCGAGATGGTAAATTAAACAGTGC 57.583 37.500 0.00 0.00 0.00 4.40
3526 4094 2.094649 ACGTAAGCTTTCTCTTCTCCCG 60.095 50.000 3.20 0.00 45.62 5.14
3631 4610 0.170561 GCTCGGACACGACACTATGT 59.829 55.000 0.00 0.00 45.59 2.29
3658 4637 1.886777 GCCGCCTCAGCTGAATCTC 60.887 63.158 18.85 6.04 36.60 2.75
3726 4712 1.369625 CGTTGAGTAGTCCCCATTGC 58.630 55.000 0.00 0.00 0.00 3.56
3727 4713 1.751437 GTTGAGTAGTCCCCATTGCC 58.249 55.000 0.00 0.00 0.00 4.52
3728 4714 0.623723 TTGAGTAGTCCCCATTGCCC 59.376 55.000 0.00 0.00 0.00 5.36
3729 4715 0.548926 TGAGTAGTCCCCATTGCCCA 60.549 55.000 0.00 0.00 0.00 5.36
3730 4716 0.846693 GAGTAGTCCCCATTGCCCAT 59.153 55.000 0.00 0.00 0.00 4.00
3731 4717 1.215423 GAGTAGTCCCCATTGCCCATT 59.785 52.381 0.00 0.00 0.00 3.16
3732 4718 1.063717 AGTAGTCCCCATTGCCCATTG 60.064 52.381 0.00 0.00 0.00 2.82
3769 4773 4.821589 GCGTTGAGCTCTCCCCGG 62.822 72.222 16.19 0.00 44.04 5.73
3795 4799 4.778143 CCGGCCGGTCTCCTTTGG 62.778 72.222 36.64 6.12 0.00 3.28
3797 4801 4.035102 GGCCGGTCTCCTTTGGCT 62.035 66.667 1.90 0.00 46.72 4.75
3798 4802 2.747855 GCCGGTCTCCTTTGGCTG 60.748 66.667 1.90 0.00 44.16 4.85
3799 4803 2.045926 CCGGTCTCCTTTGGCTGG 60.046 66.667 0.00 0.00 0.00 4.85
3800 4804 2.747855 CGGTCTCCTTTGGCTGGC 60.748 66.667 0.00 0.00 0.00 4.85
3801 4805 2.361737 GGTCTCCTTTGGCTGGCC 60.362 66.667 4.43 4.43 0.00 5.36
3802 4806 2.747855 GTCTCCTTTGGCTGGCCG 60.748 66.667 7.14 0.00 39.42 6.13
3803 4807 4.033776 TCTCCTTTGGCTGGCCGG 62.034 66.667 7.41 7.41 39.42 6.13
3847 4873 4.764771 ACCCTTGCCGCCATGCAT 62.765 61.111 0.00 0.00 41.70 3.96
3848 4874 4.215742 CCCTTGCCGCCATGCATG 62.216 66.667 20.19 20.19 41.70 4.06
3849 4875 4.884257 CCTTGCCGCCATGCATGC 62.884 66.667 21.69 11.82 41.70 4.06
3850 4876 4.136511 CTTGCCGCCATGCATGCA 62.137 61.111 25.04 25.04 41.70 3.96
3938 4976 0.999406 ACATACTCAACGCATCGTGC 59.001 50.000 0.00 0.58 39.99 5.34
3975 5013 0.456312 CGCAACCTGGAGAGTCGTAC 60.456 60.000 0.00 0.00 0.00 3.67
3976 5014 0.889306 GCAACCTGGAGAGTCGTACT 59.111 55.000 0.00 0.00 0.00 2.73
3977 5015 2.089980 GCAACCTGGAGAGTCGTACTA 58.910 52.381 0.00 0.00 0.00 1.82
3978 5016 2.159407 GCAACCTGGAGAGTCGTACTAC 60.159 54.545 0.00 0.00 0.00 2.73
4034 5072 5.490139 AGCACTGTAATTTTCATGGATCG 57.510 39.130 0.00 0.00 0.00 3.69
4053 5091 8.867112 TGGATCGATCTAGTGTTATTAACAAC 57.133 34.615 23.96 6.06 44.16 3.32
4160 5202 1.519455 CACAAGATCCGACGGCTCC 60.519 63.158 13.92 3.24 0.00 4.70
4231 5273 0.598680 CCGAATCTGATCGCCAGTCC 60.599 60.000 0.00 0.00 43.38 3.85
4264 5306 4.664677 ACGCACACCCAGACGAGC 62.665 66.667 0.00 0.00 0.00 5.03
4265 5307 4.662961 CGCACACCCAGACGAGCA 62.663 66.667 0.00 0.00 0.00 4.26
4266 5308 2.280797 GCACACCCAGACGAGCAA 60.281 61.111 0.00 0.00 0.00 3.91
4267 5309 2.607892 GCACACCCAGACGAGCAAC 61.608 63.158 0.00 0.00 0.00 4.17
4268 5310 1.069765 CACACCCAGACGAGCAACT 59.930 57.895 0.00 0.00 0.00 3.16
4269 5311 1.069765 ACACCCAGACGAGCAACTG 59.930 57.895 0.00 0.00 0.00 3.16
4334 5376 4.320456 CACCACGGTGCAGGAGCT 62.320 66.667 2.68 0.00 42.74 4.09
4335 5377 2.603473 ACCACGGTGCAGGAGCTA 60.603 61.111 1.68 0.00 42.74 3.32
4337 5379 2.656646 CACGGTGCAGGAGCTACA 59.343 61.111 0.00 0.00 42.74 2.74
4374 5416 4.200283 CGAGCCTGACGAGCCCTC 62.200 72.222 0.00 0.00 0.00 4.30
4399 5441 2.578178 CTCGCGCGACTCCTCAAG 60.578 66.667 31.40 13.14 0.00 3.02
4432 5480 1.003718 GGCAGTTACTTCGGGTGCT 60.004 57.895 0.00 0.00 34.46 4.40
4546 5594 4.719369 GACGAGTCGGCGCTGGTT 62.719 66.667 17.88 4.56 33.86 3.67
4684 5732 3.151022 GAGGAGGAGCGGGAGGTG 61.151 72.222 0.00 0.00 43.00 4.00
4861 5912 1.571919 GTTGAGTCTTGAGTGCACGT 58.428 50.000 12.01 0.00 0.00 4.49
4862 5913 1.933853 GTTGAGTCTTGAGTGCACGTT 59.066 47.619 12.01 0.00 0.00 3.99
4863 5914 3.120792 GTTGAGTCTTGAGTGCACGTTA 58.879 45.455 12.01 0.00 0.00 3.18
4911 5962 1.344114 GTTTCACATGCATGGTTGGGT 59.656 47.619 29.41 5.49 0.00 4.51
4912 5963 0.967662 TTCACATGCATGGTTGGGTG 59.032 50.000 29.41 17.45 0.00 4.61
4913 5964 0.899253 TCACATGCATGGTTGGGTGG 60.899 55.000 29.41 9.07 0.00 4.61
4914 5965 1.155859 ACATGCATGGTTGGGTGGT 59.844 52.632 29.41 3.16 0.00 4.16
4915 5966 1.186917 ACATGCATGGTTGGGTGGTG 61.187 55.000 29.41 2.68 0.00 4.17
4916 5967 2.285024 ATGCATGGTTGGGTGGTGC 61.285 57.895 0.00 0.00 36.39 5.01
4964 6015 7.730364 ACCTTGTGATGTCAAACTTTACTAG 57.270 36.000 0.00 0.00 0.00 2.57
5364 7017 0.388520 TGTTCCTCGCGTCTCATGTG 60.389 55.000 5.77 0.00 0.00 3.21
5441 7139 1.625818 GTCCACTGTCATTGGAGAGGT 59.374 52.381 12.00 0.00 44.06 3.85
5545 7737 1.762957 TCTTGCTCTATGGCCCAGTAC 59.237 52.381 0.00 0.00 0.00 2.73
5594 7991 5.250313 CAGGGAATAAGAGAATAGATGGGCT 59.750 44.000 0.00 0.00 0.00 5.19
5595 7992 5.854481 AGGGAATAAGAGAATAGATGGGCTT 59.146 40.000 0.00 0.00 0.00 4.35
5596 7993 5.942826 GGGAATAAGAGAATAGATGGGCTTG 59.057 44.000 0.00 0.00 0.00 4.01
5598 7995 6.652900 GGAATAAGAGAATAGATGGGCTTGTC 59.347 42.308 0.00 0.00 0.00 3.18
5599 7996 7.385894 AATAAGAGAATAGATGGGCTTGTCT 57.614 36.000 0.00 0.00 0.00 3.41
5601 7998 4.293494 AGAGAATAGATGGGCTTGTCTCA 58.707 43.478 0.00 0.00 37.59 3.27
5602 7999 4.718774 AGAGAATAGATGGGCTTGTCTCAA 59.281 41.667 0.00 0.00 37.59 3.02
5603 8000 5.190528 AGAGAATAGATGGGCTTGTCTCAAA 59.809 40.000 0.00 0.00 37.59 2.69
5604 8001 5.819991 AGAATAGATGGGCTTGTCTCAAAA 58.180 37.500 0.00 0.00 0.00 2.44
5605 8002 6.248433 AGAATAGATGGGCTTGTCTCAAAAA 58.752 36.000 0.00 0.00 0.00 1.94
5606 8003 5.904362 ATAGATGGGCTTGTCTCAAAAAC 57.096 39.130 0.00 0.00 0.00 2.43
5607 8004 3.565307 AGATGGGCTTGTCTCAAAAACA 58.435 40.909 0.00 0.00 0.00 2.83
5608 8005 3.960102 AGATGGGCTTGTCTCAAAAACAA 59.040 39.130 0.00 0.00 35.44 2.83
5609 8006 4.405358 AGATGGGCTTGTCTCAAAAACAAA 59.595 37.500 0.00 0.00 36.27 2.83
5611 8008 4.502962 TGGGCTTGTCTCAAAAACAAAAG 58.497 39.130 0.00 0.00 36.27 2.27
5612 8009 4.221703 TGGGCTTGTCTCAAAAACAAAAGA 59.778 37.500 0.00 0.00 36.27 2.52
5613 8010 4.805719 GGGCTTGTCTCAAAAACAAAAGAG 59.194 41.667 0.00 0.00 36.27 2.85
5614 8011 5.394115 GGGCTTGTCTCAAAAACAAAAGAGA 60.394 40.000 0.00 0.00 36.27 3.10
5618 8015 8.962111 GCTTGTCTCAAAAACAAAAGAGAATAG 58.038 33.333 0.00 0.00 38.70 1.73
5623 8020 8.796475 TCTCAAAAACAAAAGAGAATAGATGGG 58.204 33.333 0.00 0.00 34.45 4.00
5624 8021 7.378181 TCAAAAACAAAAGAGAATAGATGGGC 58.622 34.615 0.00 0.00 0.00 5.36
5717 8118 2.063266 TGTCGTACGAAAATCCTGTGC 58.937 47.619 21.39 3.82 0.00 4.57
5775 8176 2.679837 ACTGGTGCGAGCAAATTGATAG 59.320 45.455 0.00 0.00 0.00 2.08
5779 8180 3.302480 GGTGCGAGCAAATTGATAGTACG 60.302 47.826 6.51 0.00 26.50 3.67
5780 8181 3.306166 GTGCGAGCAAATTGATAGTACGT 59.694 43.478 0.00 0.00 0.00 3.57
5781 8182 4.501559 GTGCGAGCAAATTGATAGTACGTA 59.498 41.667 0.00 0.00 0.00 3.57
5782 8183 4.501559 TGCGAGCAAATTGATAGTACGTAC 59.498 41.667 18.10 18.10 0.00 3.67
5783 8184 4.373717 GCGAGCAAATTGATAGTACGTACG 60.374 45.833 19.49 15.01 0.00 3.67
5784 8185 4.731961 CGAGCAAATTGATAGTACGTACGT 59.268 41.667 25.98 25.98 0.00 3.57
5785 8186 5.903530 CGAGCAAATTGATAGTACGTACGTA 59.096 40.000 23.60 23.60 0.00 3.57
5798 8199 6.204075 GTACGTACGTACTTCATATCGAGT 57.796 41.667 38.40 11.49 45.30 4.18
5799 8200 7.321772 GTACGTACGTACTTCATATCGAGTA 57.678 40.000 38.40 11.19 45.30 2.59
5800 8201 6.204075 ACGTACGTACTTCATATCGAGTAC 57.796 41.667 21.41 12.23 35.21 2.73
5801 8202 5.980116 ACGTACGTACTTCATATCGAGTACT 59.020 40.000 21.41 0.00 36.08 2.73
5802 8203 6.143118 ACGTACGTACTTCATATCGAGTACTC 59.857 42.308 21.41 13.18 36.08 2.59
5830 8231 3.546724 TCCGTTTCAACTCAAACCATGA 58.453 40.909 0.00 0.00 33.37 3.07
5833 8234 4.035017 CGTTTCAACTCAAACCATGACAC 58.965 43.478 0.00 0.00 33.37 3.67
5834 8235 4.201910 CGTTTCAACTCAAACCATGACACT 60.202 41.667 0.00 0.00 33.37 3.55
5835 8236 5.650543 GTTTCAACTCAAACCATGACACTT 58.349 37.500 0.00 0.00 33.47 3.16
5836 8237 4.898829 TCAACTCAAACCATGACACTTG 57.101 40.909 0.00 0.00 33.47 3.16
5837 8238 4.269183 TCAACTCAAACCATGACACTTGT 58.731 39.130 0.00 0.00 33.47 3.16
5838 8239 4.704540 TCAACTCAAACCATGACACTTGTT 59.295 37.500 0.00 0.00 33.47 2.83
5840 8241 5.659440 ACTCAAACCATGACACTTGTTTT 57.341 34.783 0.00 0.00 33.47 2.43
5841 8242 6.036577 ACTCAAACCATGACACTTGTTTTT 57.963 33.333 0.00 0.00 33.47 1.94
5842 8243 5.868801 ACTCAAACCATGACACTTGTTTTTG 59.131 36.000 0.00 0.00 33.47 2.44
5843 8244 6.030548 TCAAACCATGACACTTGTTTTTGA 57.969 33.333 0.00 0.00 31.50 2.69
5844 8245 6.459066 TCAAACCATGACACTTGTTTTTGAA 58.541 32.000 0.00 0.00 31.50 2.69
5845 8246 6.367422 TCAAACCATGACACTTGTTTTTGAAC 59.633 34.615 0.00 0.00 31.50 3.18
5846 8247 4.420168 ACCATGACACTTGTTTTTGAACG 58.580 39.130 0.00 0.00 0.00 3.95
5847 8248 3.796178 CCATGACACTTGTTTTTGAACGG 59.204 43.478 0.00 0.00 0.00 4.44
5849 8250 4.086199 TGACACTTGTTTTTGAACGGAC 57.914 40.909 0.00 0.00 0.00 4.79
5850 8251 3.095738 GACACTTGTTTTTGAACGGACG 58.904 45.455 0.00 0.00 0.00 4.79
5851 8252 2.159490 ACACTTGTTTTTGAACGGACGG 60.159 45.455 0.00 0.00 0.00 4.79
5853 8254 2.353579 ACTTGTTTTTGAACGGACGGAG 59.646 45.455 0.00 0.00 0.00 4.63
5869 8305 2.887152 ACGGAGTACTTCGTACCTTGTT 59.113 45.455 27.60 0.00 41.94 2.83
5871 8307 3.058016 CGGAGTACTTCGTACCTTGTTGA 60.058 47.826 15.78 0.00 39.58 3.18
5888 8324 1.144691 TGAGGGGAATTGACACCACA 58.855 50.000 0.00 0.00 35.49 4.17
5902 8338 2.224426 ACACCACACACCGTTATGACAT 60.224 45.455 0.00 0.00 0.00 3.06
5903 8339 2.415168 CACCACACACCGTTATGACATC 59.585 50.000 0.00 0.00 0.00 3.06
5904 8340 2.037902 ACCACACACCGTTATGACATCA 59.962 45.455 0.00 0.00 0.00 3.07
5906 8342 2.415168 CACACACCGTTATGACATCACC 59.585 50.000 0.00 0.00 0.00 4.02
5907 8343 2.301870 ACACACCGTTATGACATCACCT 59.698 45.455 0.00 0.00 0.00 4.00
6038 8478 7.573843 GCTTGCTCGGCATTGTAATATCTTTAT 60.574 37.037 0.00 0.00 38.76 1.40
6039 8479 7.364522 TGCTCGGCATTGTAATATCTTTATC 57.635 36.000 0.00 0.00 31.71 1.75
6041 8481 7.095229 TGCTCGGCATTGTAATATCTTTATCAC 60.095 37.037 0.00 0.00 31.71 3.06
6051 8491 8.784994 TGTAATATCTTTATCACCGAGACTCTC 58.215 37.037 0.03 0.00 0.00 3.20
6052 8492 9.005777 GTAATATCTTTATCACCGAGACTCTCT 57.994 37.037 4.52 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 9.801873 GACCATGTATGCTAAAACAACATATTT 57.198 29.630 0.00 0.00 0.00 1.40
64 65 7.497579 TCGACCATGTATGCTAAAACAACATAT 59.502 33.333 0.00 0.00 0.00 1.78
66 67 5.645929 TCGACCATGTATGCTAAAACAACAT 59.354 36.000 0.00 0.00 0.00 2.71
67 68 4.998033 TCGACCATGTATGCTAAAACAACA 59.002 37.500 0.00 0.00 0.00 3.33
68 69 5.321516 GTCGACCATGTATGCTAAAACAAC 58.678 41.667 3.51 0.00 0.00 3.32
71 72 3.936453 TGGTCGACCATGTATGCTAAAAC 59.064 43.478 33.23 1.62 42.01 2.43
90 91 5.916661 ACTTCATACACGAGTAGAATGGT 57.083 39.130 0.00 0.00 32.86 3.55
103 104 8.681806 TGTCATTTCTTTGTGAAACTTCATACA 58.318 29.630 0.00 0.00 46.08 2.29
108 109 5.748630 GGGTGTCATTTCTTTGTGAAACTTC 59.251 40.000 0.00 0.00 46.08 3.01
111 112 5.004922 TGGGTGTCATTTCTTTGTGAAAC 57.995 39.130 0.00 0.00 46.08 2.78
176 177 6.766467 CCTTACTAGTCCTTGAAACAGTGTTT 59.234 38.462 21.00 21.00 0.00 2.83
187 188 4.159879 ACAATCCGACCTTACTAGTCCTTG 59.840 45.833 0.00 0.00 0.00 3.61
202 203 6.311935 CCGTAGTTGAGAAAAATACAATCCGA 59.688 38.462 0.00 0.00 0.00 4.55
203 204 6.311935 TCCGTAGTTGAGAAAAATACAATCCG 59.688 38.462 0.00 0.00 0.00 4.18
204 205 7.605410 TCCGTAGTTGAGAAAAATACAATCC 57.395 36.000 0.00 0.00 0.00 3.01
219 220 8.420374 AATAACACATGAGTATTCCGTAGTTG 57.580 34.615 0.00 0.00 0.00 3.16
220 221 7.709613 GGAATAACACATGAGTATTCCGTAGTT 59.290 37.037 20.65 0.00 37.50 2.24
234 235 6.727824 AGTTTCGAGAAGGAATAACACATG 57.272 37.500 0.00 0.00 0.00 3.21
236 237 6.780706 GAAGTTTCGAGAAGGAATAACACA 57.219 37.500 0.00 0.00 0.00 3.72
256 257 3.508762 ACCATTCTACTTGCGTACGAAG 58.491 45.455 21.65 20.11 0.00 3.79
260 261 2.850647 GTCGACCATTCTACTTGCGTAC 59.149 50.000 3.51 0.00 0.00 3.67
266 267 6.001460 TCAAATTTGGTCGACCATTCTACTT 58.999 36.000 36.52 19.20 46.97 2.24
327 328 8.642885 CGAGCTCACATGAATAGTATATTCAAC 58.357 37.037 15.40 3.49 40.84 3.18
344 346 1.069090 GGTTCCACACGAGCTCACA 59.931 57.895 15.40 0.00 0.00 3.58
348 350 0.108585 AACATGGTTCCACACGAGCT 59.891 50.000 0.00 0.00 0.00 4.09
353 355 3.058016 CACAGATGAACATGGTTCCACAC 60.058 47.826 6.64 0.00 0.00 3.82
358 360 7.867403 ACAAAAATACACAGATGAACATGGTTC 59.133 33.333 0.00 2.25 0.00 3.62
367 369 7.716768 TTACGTGACAAAAATACACAGATGA 57.283 32.000 0.00 0.00 34.69 2.92
452 455 2.989909 TGTCAATGATCGGATGTTGCT 58.010 42.857 0.00 0.00 0.00 3.91
458 461 4.132336 CTGTCCAATGTCAATGATCGGAT 58.868 43.478 0.00 0.00 0.00 4.18
468 471 4.365514 TTTAAGCCTCTGTCCAATGTCA 57.634 40.909 0.00 0.00 0.00 3.58
498 501 3.555168 GGGGAGAGTATATGTTTCAGGCG 60.555 52.174 0.00 0.00 0.00 5.52
507 510 5.483685 TTTTCGGATGGGGAGAGTATATG 57.516 43.478 0.00 0.00 0.00 1.78
508 511 7.808279 TTATTTTCGGATGGGGAGAGTATAT 57.192 36.000 0.00 0.00 0.00 0.86
513 516 7.168219 TGATAATTATTTTCGGATGGGGAGAG 58.832 38.462 0.00 0.00 0.00 3.20
517 520 7.759489 TTCTGATAATTATTTTCGGATGGGG 57.241 36.000 7.54 0.00 0.00 4.96
546 549 8.144478 TGTATCTAGACTACTGAAATGCATTCC 58.856 37.037 13.38 0.00 37.22 3.01
574 585 8.788806 ACTTGTCGAACACATGGATAAAAATTA 58.211 29.630 0.00 0.00 34.98 1.40
576 587 7.214467 ACTTGTCGAACACATGGATAAAAAT 57.786 32.000 0.00 0.00 34.98 1.82
586 597 5.408604 GTCCAAAGATACTTGTCGAACACAT 59.591 40.000 0.00 0.00 33.90 3.21
603 614 8.577048 TCTATATATACTTCCTCCGTCCAAAG 57.423 38.462 0.00 0.00 0.00 2.77
605 616 8.945195 TTTCTATATATACTTCCTCCGTCCAA 57.055 34.615 0.00 0.00 0.00 3.53
606 617 8.945195 TTTTCTATATATACTTCCTCCGTCCA 57.055 34.615 0.00 0.00 0.00 4.02
607 618 8.468399 CCTTTTCTATATATACTTCCTCCGTCC 58.532 40.741 0.00 0.00 0.00 4.79
616 628 9.257651 GCGTGTGTTCCTTTTCTATATATACTT 57.742 33.333 0.00 0.00 0.00 2.24
625 637 4.748102 CACTAAGCGTGTGTTCCTTTTCTA 59.252 41.667 0.00 0.00 38.84 2.10
627 639 3.848554 GCACTAAGCGTGTGTTCCTTTTC 60.849 47.826 8.17 0.00 45.57 2.29
750 762 9.961265 CGACTTTTGGAGTATATAAGTGTATGA 57.039 33.333 0.00 0.00 39.19 2.15
751 763 9.193133 CCGACTTTTGGAGTATATAAGTGTATG 57.807 37.037 0.00 0.00 39.19 2.39
757 770 7.378995 CGAAGACCGACTTTTGGAGTATATAAG 59.621 40.741 0.00 0.00 39.19 1.73
767 780 2.928116 GGATACGAAGACCGACTTTTGG 59.072 50.000 0.00 0.00 41.76 3.28
775 791 0.029035 CGGAGTGGATACGAAGACCG 59.971 60.000 0.00 0.00 37.47 4.79
776 792 0.384669 CCGGAGTGGATACGAAGACC 59.615 60.000 0.00 0.00 37.47 3.85
830 846 3.242944 CGCGATTATATATCAACCAGCCG 59.757 47.826 0.00 0.00 0.00 5.52
860 880 2.111878 GCAGTCAGCACCACCTGT 59.888 61.111 0.00 0.00 44.79 4.00
994 1014 3.957586 CAGCTGTGGGGTGGCTCA 61.958 66.667 5.25 0.00 39.52 4.26
1065 1089 1.479709 GGTAGCTGAGAGCCTGAGAA 58.520 55.000 0.00 0.00 43.77 2.87
1066 1090 0.396417 GGGTAGCTGAGAGCCTGAGA 60.396 60.000 0.00 0.00 43.77 3.27
1079 1103 2.396157 CGGCGAGGTTTTGGGTAGC 61.396 63.158 0.00 0.00 0.00 3.58
1174 1202 3.998672 GGTCGACCTTGGTGCCGA 61.999 66.667 27.64 0.00 0.00 5.54
1211 1239 4.357947 TGCCGACTGCCGAGTGTC 62.358 66.667 0.00 0.00 41.76 3.67
1381 1409 4.083862 GGCGCCGTCTCCTCCTTT 62.084 66.667 12.58 0.00 0.00 3.11
1711 1739 2.885861 GAGCTGGACGACGGTGAT 59.114 61.111 0.00 0.00 0.00 3.06
1744 1772 4.778143 GCGGCGGGGTTGTCATCT 62.778 66.667 9.78 0.00 0.00 2.90
1797 1825 2.825836 GAGCAATGGACTGGGCCG 60.826 66.667 0.00 0.00 0.00 6.13
1799 1827 2.413142 GCAGAGCAATGGACTGGGC 61.413 63.158 0.00 0.00 33.00 5.36
1800 1828 1.001764 TGCAGAGCAATGGACTGGG 60.002 57.895 0.00 0.00 34.76 4.45
1802 1830 1.792301 CGTGCAGAGCAATGGACTG 59.208 57.895 10.30 0.00 41.47 3.51
1818 1853 2.607635 CGGCAACTAGTCAAATATGCGT 59.392 45.455 8.47 0.00 34.73 5.24
1819 1854 2.599848 GCGGCAACTAGTCAAATATGCG 60.600 50.000 8.47 5.92 34.73 4.73
1824 1859 1.359848 CGAGCGGCAACTAGTCAAAT 58.640 50.000 1.45 0.00 0.00 2.32
1885 1920 1.566404 ATCGCGCAATGATTGACGTA 58.434 45.000 9.76 5.70 34.63 3.57
1886 1921 0.726827 AATCGCGCAATGATTGACGT 59.273 45.000 9.76 0.00 34.86 4.34
1888 1923 2.518949 ACAAATCGCGCAATGATTGAC 58.481 42.857 9.76 0.00 36.24 3.18
1910 1945 0.994263 GTATTTACGACGCGCCAACT 59.006 50.000 5.73 0.00 0.00 3.16
1939 1979 0.387239 TGCATAGCGATCGATCACCG 60.387 55.000 24.40 12.93 40.25 4.94
1996 2040 2.380064 TTTTGTTGAGGTGCCCATCT 57.620 45.000 0.00 0.00 0.00 2.90
2006 2050 8.268738 GTGGAGATTTTTCGAATTTTTGTTGAG 58.731 33.333 0.00 0.00 0.00 3.02
2172 2261 1.962100 CCCCGTCCCTATACTTGAGTC 59.038 57.143 0.00 0.00 0.00 3.36
2193 2282 4.227134 CACGGAGAGCCCATCCCG 62.227 72.222 0.00 0.00 43.42 5.14
2194 2283 3.083997 ACACGGAGAGCCCATCCC 61.084 66.667 0.00 0.00 32.86 3.85
2195 2284 2.185310 AACACACGGAGAGCCCATCC 62.185 60.000 0.00 0.00 34.14 3.51
2196 2285 0.535335 TAACACACGGAGAGCCCATC 59.465 55.000 0.00 0.00 34.14 3.51
2207 2296 0.802494 GGGCTCACCAATAACACACG 59.198 55.000 0.00 0.00 39.85 4.49
2265 2354 7.710896 ACGGGTACAATCTTATTACACTAGTC 58.289 38.462 0.00 0.00 0.00 2.59
2266 2355 7.651027 ACGGGTACAATCTTATTACACTAGT 57.349 36.000 0.00 0.00 0.00 2.57
2267 2356 8.078596 GGTACGGGTACAATCTTATTACACTAG 58.921 40.741 10.81 0.00 37.78 2.57
2273 2362 5.305128 CAGGGGTACGGGTACAATCTTATTA 59.695 44.000 10.81 0.00 37.78 0.98
2275 2364 3.644738 CAGGGGTACGGGTACAATCTTAT 59.355 47.826 10.81 0.00 37.78 1.73
2349 2440 1.626654 CTGTTTACGCAGTCAGCCGG 61.627 60.000 0.00 0.00 43.93 6.13
2351 2442 1.497722 GCTGTTTACGCAGTCAGCC 59.502 57.895 10.66 0.00 46.06 4.85
2373 2472 2.104859 CCCACATGTCAGCGAGCTG 61.105 63.158 18.20 18.20 44.86 4.24
2375 2474 2.821366 CCCCACATGTCAGCGAGC 60.821 66.667 0.00 0.00 0.00 5.03
2398 2497 2.161030 CGGGAGGGAGTATACTACTGC 58.839 57.143 14.87 15.43 45.18 4.40
2414 2590 1.976474 GCAATGCACCTTTCCGGGA 60.976 57.895 0.00 0.00 36.97 5.14
2428 2604 0.602638 TTTCTGAGGCACGTCGCAAT 60.603 50.000 11.20 0.77 45.17 3.56
2554 2786 0.028505 CCCGTACGTACATCACTCGG 59.971 60.000 24.50 17.17 35.13 4.63
2556 2788 0.452987 TGCCCGTACGTACATCACTC 59.547 55.000 24.50 8.15 0.00 3.51
2566 2798 1.858458 CACTCATAATGTGCCCGTACG 59.142 52.381 8.69 8.69 0.00 3.67
2577 2809 4.624913 TCCCTCTTCACTCCACTCATAAT 58.375 43.478 0.00 0.00 0.00 1.28
2645 2883 1.214589 GATGTCACCGCACCGTACT 59.785 57.895 0.00 0.00 0.00 2.73
2648 2886 4.735132 CCGATGTCACCGCACCGT 62.735 66.667 0.00 0.00 0.00 4.83
2649 2887 4.735132 ACCGATGTCACCGCACCG 62.735 66.667 0.00 0.00 0.00 4.94
2651 2889 2.726691 CGAACCGATGTCACCGCAC 61.727 63.158 0.00 0.00 0.00 5.34
2652 2890 2.431771 CGAACCGATGTCACCGCA 60.432 61.111 0.00 0.00 0.00 5.69
2653 2891 2.126228 TCGAACCGATGTCACCGC 60.126 61.111 0.00 0.00 0.00 5.68
2669 2907 6.457528 GCTGTTATAAATTGGTGAGCTCACTC 60.458 42.308 38.17 29.33 45.73 3.51
2681 2933 4.601019 CGGAAGCTGGCTGTTATAAATTG 58.399 43.478 0.00 0.00 0.00 2.32
2730 3137 3.399952 AGTTAGCCTTGCCTAGGTAGA 57.600 47.619 11.31 0.00 46.61 2.59
2731 3138 5.565045 CGATTAGTTAGCCTTGCCTAGGTAG 60.565 48.000 11.31 8.28 46.61 3.18
2732 3139 4.280174 CGATTAGTTAGCCTTGCCTAGGTA 59.720 45.833 11.31 2.03 46.61 3.08
2733 3140 3.069729 CGATTAGTTAGCCTTGCCTAGGT 59.930 47.826 11.31 0.00 46.61 3.08
2736 3143 2.698797 AGCGATTAGTTAGCCTTGCCTA 59.301 45.455 0.00 0.00 0.00 3.93
2749 3158 0.248498 TGAAGCGGACGAGCGATTAG 60.248 55.000 0.00 0.00 43.00 1.73
2780 3221 6.024552 TCTGCCAAAATTTATGAGTTCCAC 57.975 37.500 0.00 0.00 0.00 4.02
2781 3222 6.436847 TCATCTGCCAAAATTTATGAGTTCCA 59.563 34.615 0.00 0.00 0.00 3.53
2782 3223 6.866480 TCATCTGCCAAAATTTATGAGTTCC 58.134 36.000 0.00 0.00 0.00 3.62
2783 3224 8.031277 ACTTCATCTGCCAAAATTTATGAGTTC 58.969 33.333 0.00 0.00 0.00 3.01
2784 3225 7.816031 CACTTCATCTGCCAAAATTTATGAGTT 59.184 33.333 0.00 0.00 0.00 3.01
2822 3263 3.046280 GCAAGACGCTACTACCACC 57.954 57.895 0.00 0.00 37.77 4.61
2881 3330 1.674651 AGCAGACGTAGGTGCTCGA 60.675 57.895 12.51 0.00 46.78 4.04
2911 3360 4.322385 GCGGCTTGGCGTTTTCGT 62.322 61.111 17.26 0.00 46.03 3.85
2923 3372 3.453679 GGAGGAGAGAACGCGGCT 61.454 66.667 12.47 7.37 0.00 5.52
2927 3376 1.216710 CCTGTGGAGGAGAGAACGC 59.783 63.158 0.00 0.00 42.93 4.84
3018 3472 8.988546 ACACATAGATGTAGATACACTCTTCT 57.011 34.615 0.00 0.00 39.39 2.85
3042 3496 0.234625 TCGCGTTGCAAATGTCAGAC 59.765 50.000 5.77 0.00 34.61 3.51
3102 3560 8.188799 TCTACATACAGTATTTTCTGACGGAAG 58.811 37.037 0.00 0.00 38.63 3.46
3104 3562 7.634671 TCTACATACAGTATTTTCTGACGGA 57.365 36.000 0.65 0.00 38.63 4.69
3131 3592 1.573108 TGGATCGGCTTCTTCTCCTT 58.427 50.000 0.00 0.00 0.00 3.36
3137 3598 0.322546 GGTGGTTGGATCGGCTTCTT 60.323 55.000 0.00 0.00 0.00 2.52
3138 3599 1.299976 GGTGGTTGGATCGGCTTCT 59.700 57.895 0.00 0.00 0.00 2.85
3141 3602 3.728373 GGGGTGGTTGGATCGGCT 61.728 66.667 0.00 0.00 0.00 5.52
3143 3604 0.324275 ATTTGGGGTGGTTGGATCGG 60.324 55.000 0.00 0.00 0.00 4.18
3144 3605 0.817013 CATTTGGGGTGGTTGGATCG 59.183 55.000 0.00 0.00 0.00 3.69
3145 3606 1.194218 CCATTTGGGGTGGTTGGATC 58.806 55.000 0.00 0.00 31.96 3.36
3147 3608 4.963944 CCATTTGGGGTGGTTGGA 57.036 55.556 0.00 0.00 31.96 3.53
3167 3628 1.069427 CAACCCAACGTACGTCCCA 59.931 57.895 23.05 0.00 0.00 4.37
3168 3629 1.668793 CCAACCCAACGTACGTCCC 60.669 63.158 23.05 0.00 0.00 4.46
3169 3630 0.532640 AACCAACCCAACGTACGTCC 60.533 55.000 23.05 0.00 0.00 4.79
3170 3631 1.298602 AAACCAACCCAACGTACGTC 58.701 50.000 23.05 0.00 0.00 4.34
3171 3632 1.670295 GAAAACCAACCCAACGTACGT 59.330 47.619 16.72 16.72 0.00 3.57
3172 3633 1.333081 CGAAAACCAACCCAACGTACG 60.333 52.381 15.01 15.01 0.00 3.67
3173 3634 1.939255 TCGAAAACCAACCCAACGTAC 59.061 47.619 0.00 0.00 0.00 3.67
3174 3635 2.322355 TCGAAAACCAACCCAACGTA 57.678 45.000 0.00 0.00 0.00 3.57
3175 3636 1.682740 ATCGAAAACCAACCCAACGT 58.317 45.000 0.00 0.00 0.00 3.99
3176 3637 2.033550 TCAATCGAAAACCAACCCAACG 59.966 45.455 0.00 0.00 0.00 4.10
3177 3638 3.181485 TGTCAATCGAAAACCAACCCAAC 60.181 43.478 0.00 0.00 0.00 3.77
3233 3694 0.036022 ACACAGGGAAGAAGAGCAGC 59.964 55.000 0.00 0.00 0.00 5.25
3234 3695 3.055530 ACATACACAGGGAAGAAGAGCAG 60.056 47.826 0.00 0.00 0.00 4.24
3253 3714 8.830580 CATCTCGATCATTTTAACCACTTACAT 58.169 33.333 0.00 0.00 0.00 2.29
3254 3715 7.279981 CCATCTCGATCATTTTAACCACTTACA 59.720 37.037 0.00 0.00 0.00 2.41
3450 4018 3.925914 AAGGGGGTAGCAGGCGAGT 62.926 63.158 0.00 0.00 0.00 4.18
3451 4019 3.083997 AAGGGGGTAGCAGGCGAG 61.084 66.667 0.00 0.00 0.00 5.03
3452 4020 3.081409 GAAGGGGGTAGCAGGCGA 61.081 66.667 0.00 0.00 0.00 5.54
3513 4081 6.308015 TGAATTAATCCGGGAGAAGAGAAA 57.692 37.500 0.00 0.00 0.00 2.52
3526 4094 2.218603 ACGGCACCGATGAATTAATCC 58.781 47.619 17.40 0.00 42.83 3.01
3608 4587 2.355837 TGTCGTGTCCGAGCAAGC 60.356 61.111 0.00 0.00 45.26 4.01
3631 4610 1.656818 GCTGAGGCGGCTTTAATGCA 61.657 55.000 14.76 4.06 32.24 3.96
3658 4637 1.264749 TGGGTCGATCTGGAGGTTGG 61.265 60.000 0.00 0.00 0.00 3.77
3726 4712 0.322816 CTGTGGTCCAGTCCAATGGG 60.323 60.000 0.00 0.00 41.01 4.00
3727 4713 0.322816 CCTGTGGTCCAGTCCAATGG 60.323 60.000 0.00 0.00 39.74 3.16
3728 4714 0.962356 GCCTGTGGTCCAGTCCAATG 60.962 60.000 0.00 0.00 39.74 2.82
3729 4715 1.380302 GCCTGTGGTCCAGTCCAAT 59.620 57.895 0.00 0.00 39.74 3.16
3730 4716 2.055689 CTGCCTGTGGTCCAGTCCAA 62.056 60.000 0.00 0.00 39.74 3.53
3731 4717 2.447572 TGCCTGTGGTCCAGTCCA 60.448 61.111 0.00 0.00 39.74 4.02
3732 4718 2.348998 CTGCCTGTGGTCCAGTCC 59.651 66.667 0.00 0.00 39.74 3.85
3781 4785 2.747855 CAGCCAAAGGAGACCGGC 60.748 66.667 0.00 0.00 45.23 6.13
3800 4804 2.022240 GAGGTCTCTAGCCAAGCCGG 62.022 65.000 0.00 0.00 38.11 6.13
3801 4805 1.439644 GAGGTCTCTAGCCAAGCCG 59.560 63.158 0.00 0.00 0.00 5.52
3802 4806 1.691195 GGGAGGTCTCTAGCCAAGCC 61.691 65.000 0.00 0.00 0.00 4.35
3803 4807 0.978146 TGGGAGGTCTCTAGCCAAGC 60.978 60.000 0.00 0.00 0.00 4.01
3804 4808 1.415659 CATGGGAGGTCTCTAGCCAAG 59.584 57.143 0.00 0.00 0.00 3.61
3805 4809 1.008327 TCATGGGAGGTCTCTAGCCAA 59.992 52.381 0.00 0.00 0.00 4.52
3938 4976 5.164225 GGTTGCGAAAAACTTATTTACTGCG 60.164 40.000 0.00 0.00 0.00 5.18
3975 5013 2.619177 ACCTAGTGCTGCTCATACGTAG 59.381 50.000 0.08 0.00 0.00 3.51
3976 5014 2.617308 GACCTAGTGCTGCTCATACGTA 59.383 50.000 0.00 0.00 0.00 3.57
3977 5015 1.405821 GACCTAGTGCTGCTCATACGT 59.594 52.381 0.00 0.00 0.00 3.57
3978 5016 1.405463 TGACCTAGTGCTGCTCATACG 59.595 52.381 0.00 0.00 0.00 3.06
4034 5072 8.596380 GCTGTGAGTTGTTAATAACACTAGATC 58.404 37.037 16.24 5.58 41.97 2.75
4053 5091 6.027749 GGTTAATTAAATCAACGGCTGTGAG 58.972 40.000 0.00 0.00 0.00 3.51
4231 5273 2.497092 CGTGTCGTCAGATTCCGCG 61.497 63.158 0.00 0.00 0.00 6.46
4328 5370 2.107705 CACGATCGGTGTAGCTCCT 58.892 57.895 20.98 0.00 41.89 3.69
4337 5379 1.153745 GCTCTGCTTCACGATCGGT 60.154 57.895 20.98 1.94 0.00 4.69
4432 5480 2.678934 AGGAGCAGCCGTTCCGTA 60.679 61.111 0.00 0.00 46.66 4.02
4546 5594 1.672030 CCATTCCTGTGCAGCACGA 60.672 57.895 20.67 9.93 37.14 4.35
4696 5744 1.892819 CGTCCATCACCAGCACCTCT 61.893 60.000 0.00 0.00 0.00 3.69
4736 5784 3.672255 CTGCCAATGCCAAGTCGCG 62.672 63.158 0.00 0.00 36.33 5.87
4772 5820 4.079028 CACGACGTGCACATATTTTACAC 58.921 43.478 18.64 0.00 0.00 2.90
4862 5913 8.714179 CGTCATGTTTTAACACTCCAGTTAATA 58.286 33.333 0.00 0.00 41.89 0.98
4863 5914 7.227910 ACGTCATGTTTTAACACTCCAGTTAAT 59.772 33.333 0.00 0.00 41.89 1.40
5364 7017 1.000396 ATCTTTGGCTGGACCCTGC 60.000 57.895 9.12 9.12 37.83 4.85
5441 7139 1.281867 CTTGCCTCCCCTTCACACATA 59.718 52.381 0.00 0.00 0.00 2.29
5545 7737 4.331968 TCTGTAACAATTAGTTGGGCCAG 58.668 43.478 6.23 0.00 41.50 4.85
5596 7993 9.617975 CCATCTATTCTCTTTTGTTTTTGAGAC 57.382 33.333 0.00 0.00 35.60 3.36
5598 7995 7.543520 GCCCATCTATTCTCTTTTGTTTTTGAG 59.456 37.037 0.00 0.00 0.00 3.02
5599 7996 7.233348 AGCCCATCTATTCTCTTTTGTTTTTGA 59.767 33.333 0.00 0.00 0.00 2.69
5601 7998 7.544804 AGCCCATCTATTCTCTTTTGTTTTT 57.455 32.000 0.00 0.00 0.00 1.94
5602 7999 7.015584 ACAAGCCCATCTATTCTCTTTTGTTTT 59.984 33.333 0.00 0.00 0.00 2.43
5603 8000 6.494835 ACAAGCCCATCTATTCTCTTTTGTTT 59.505 34.615 0.00 0.00 0.00 2.83
5604 8001 6.012745 ACAAGCCCATCTATTCTCTTTTGTT 58.987 36.000 0.00 0.00 0.00 2.83
5605 8002 5.416952 CACAAGCCCATCTATTCTCTTTTGT 59.583 40.000 0.00 0.00 0.00 2.83
5606 8003 5.416952 ACACAAGCCCATCTATTCTCTTTTG 59.583 40.000 0.00 0.00 0.00 2.44
5607 8004 5.574188 ACACAAGCCCATCTATTCTCTTTT 58.426 37.500 0.00 0.00 0.00 2.27
5608 8005 5.184892 ACACAAGCCCATCTATTCTCTTT 57.815 39.130 0.00 0.00 0.00 2.52
5609 8006 4.851639 ACACAAGCCCATCTATTCTCTT 57.148 40.909 0.00 0.00 0.00 2.85
5611 8008 5.283457 ACTACACAAGCCCATCTATTCTC 57.717 43.478 0.00 0.00 0.00 2.87
5612 8009 5.700402 AACTACACAAGCCCATCTATTCT 57.300 39.130 0.00 0.00 0.00 2.40
5613 8010 7.859325 TTTAACTACACAAGCCCATCTATTC 57.141 36.000 0.00 0.00 0.00 1.75
5614 8011 8.823220 AATTTAACTACACAAGCCCATCTATT 57.177 30.769 0.00 0.00 0.00 1.73
5618 8015 5.417580 TGGAATTTAACTACACAAGCCCATC 59.582 40.000 0.00 0.00 0.00 3.51
5620 8017 4.730966 TGGAATTTAACTACACAAGCCCA 58.269 39.130 0.00 0.00 0.00 5.36
5621 8018 5.715434 TTGGAATTTAACTACACAAGCCC 57.285 39.130 0.00 0.00 0.00 5.19
5623 8020 9.221775 CGATATTTGGAATTTAACTACACAAGC 57.778 33.333 0.00 0.00 0.00 4.01
5624 8021 9.221775 GCGATATTTGGAATTTAACTACACAAG 57.778 33.333 0.00 0.00 0.00 3.16
5779 8180 7.168972 AGTGAGTACTCGATATGAAGTACGTAC 59.831 40.741 18.10 18.10 41.19 3.67
5780 8181 7.205992 AGTGAGTACTCGATATGAAGTACGTA 58.794 38.462 17.85 0.00 41.19 3.57
5781 8182 6.047870 AGTGAGTACTCGATATGAAGTACGT 58.952 40.000 17.85 0.00 41.19 3.57
5782 8183 6.528014 AGTGAGTACTCGATATGAAGTACG 57.472 41.667 17.85 0.00 41.19 3.67
5796 8197 2.169330 GAAACGGAGGGAGTGAGTACT 58.831 52.381 0.00 0.00 40.66 2.73
5797 8198 1.891150 TGAAACGGAGGGAGTGAGTAC 59.109 52.381 0.00 0.00 0.00 2.73
5798 8199 2.297698 TGAAACGGAGGGAGTGAGTA 57.702 50.000 0.00 0.00 0.00 2.59
5799 8200 1.070289 GTTGAAACGGAGGGAGTGAGT 59.930 52.381 0.00 0.00 0.00 3.41
5800 8201 1.344763 AGTTGAAACGGAGGGAGTGAG 59.655 52.381 0.00 0.00 0.00 3.51
5801 8202 1.343465 GAGTTGAAACGGAGGGAGTGA 59.657 52.381 0.00 0.00 0.00 3.41
5802 8203 1.070134 TGAGTTGAAACGGAGGGAGTG 59.930 52.381 0.00 0.00 0.00 3.51
5830 8231 2.159490 CCGTCCGTTCAAAAACAAGTGT 60.159 45.455 0.00 0.00 34.93 3.55
5833 8234 2.353579 ACTCCGTCCGTTCAAAAACAAG 59.646 45.455 0.00 0.00 34.93 3.16
5834 8235 2.358015 ACTCCGTCCGTTCAAAAACAA 58.642 42.857 0.00 0.00 34.93 2.83
5835 8236 2.027003 ACTCCGTCCGTTCAAAAACA 57.973 45.000 0.00 0.00 34.93 2.83
5836 8237 3.126073 AGTACTCCGTCCGTTCAAAAAC 58.874 45.455 0.00 0.00 0.00 2.43
5837 8238 3.457610 AGTACTCCGTCCGTTCAAAAA 57.542 42.857 0.00 0.00 0.00 1.94
5838 8239 3.383761 GAAGTACTCCGTCCGTTCAAAA 58.616 45.455 0.00 0.00 0.00 2.44
5840 8241 1.069022 CGAAGTACTCCGTCCGTTCAA 60.069 52.381 0.00 0.00 0.00 2.69
5841 8242 0.518636 CGAAGTACTCCGTCCGTTCA 59.481 55.000 0.00 0.00 0.00 3.18
5842 8243 0.519077 ACGAAGTACTCCGTCCGTTC 59.481 55.000 0.00 0.00 41.94 3.95
5843 8244 1.808411 TACGAAGTACTCCGTCCGTT 58.192 50.000 11.50 0.00 45.11 4.44
5844 8245 3.532896 TACGAAGTACTCCGTCCGT 57.467 52.632 11.50 10.80 45.11 4.69
5854 8255 2.564062 CCCCTCAACAAGGTACGAAGTA 59.436 50.000 0.00 0.00 44.56 2.24
5856 8257 1.621814 TCCCCTCAACAAGGTACGAAG 59.378 52.381 0.00 0.00 44.56 3.79
5857 8258 1.719529 TCCCCTCAACAAGGTACGAA 58.280 50.000 0.00 0.00 44.56 3.85
5860 8261 3.756963 GTCAATTCCCCTCAACAAGGTAC 59.243 47.826 0.00 0.00 44.56 3.34
5861 8262 3.396276 TGTCAATTCCCCTCAACAAGGTA 59.604 43.478 0.00 0.00 44.56 3.08
5862 8263 2.176798 TGTCAATTCCCCTCAACAAGGT 59.823 45.455 0.00 0.00 44.56 3.50
5864 8265 2.558359 GGTGTCAATTCCCCTCAACAAG 59.442 50.000 0.00 0.00 0.00 3.16
5869 8305 1.144691 TGTGGTGTCAATTCCCCTCA 58.855 50.000 0.00 0.00 0.00 3.86
5871 8307 0.850100 TGTGTGGTGTCAATTCCCCT 59.150 50.000 0.00 0.00 0.00 4.79
5874 8310 0.591170 CGGTGTGTGGTGTCAATTCC 59.409 55.000 0.00 0.00 0.00 3.01
5888 8324 4.811969 TTAGGTGATGTCATAACGGTGT 57.188 40.909 0.00 0.00 0.00 4.16
5902 8338 6.821665 CCAAGGAGAAAATACGATTTAGGTGA 59.178 38.462 0.00 0.00 0.00 4.02
5903 8339 6.458342 GCCAAGGAGAAAATACGATTTAGGTG 60.458 42.308 0.00 0.00 0.00 4.00
5904 8340 5.589050 GCCAAGGAGAAAATACGATTTAGGT 59.411 40.000 0.00 0.00 0.00 3.08
5906 8342 6.677781 TGCCAAGGAGAAAATACGATTTAG 57.322 37.500 0.00 0.00 0.00 1.85
5907 8343 6.657541 ACTTGCCAAGGAGAAAATACGATTTA 59.342 34.615 9.64 0.00 0.00 1.40
5994 8433 6.573617 GCAAGCGCTGTTTGAAAATATATT 57.426 33.333 12.58 0.00 34.30 1.28
6010 8449 2.252127 TTACAATGCCGAGCAAGCGC 62.252 55.000 0.00 0.00 43.62 5.92
6011 8450 0.378257 ATTACAATGCCGAGCAAGCG 59.622 50.000 2.68 0.00 43.62 4.68
6012 8451 3.499918 AGATATTACAATGCCGAGCAAGC 59.500 43.478 2.68 0.00 43.62 4.01
6013 8452 5.679734 AAGATATTACAATGCCGAGCAAG 57.320 39.130 2.68 2.27 43.62 4.01
6014 8453 7.443879 TGATAAAGATATTACAATGCCGAGCAA 59.556 33.333 2.68 0.00 43.62 3.91
6015 8454 6.934083 TGATAAAGATATTACAATGCCGAGCA 59.066 34.615 1.01 1.01 44.86 4.26
6016 8455 7.237173 GTGATAAAGATATTACAATGCCGAGC 58.763 38.462 0.00 0.00 30.48 5.03
6038 8478 0.251386 AGCCAAGAGAGTCTCGGTGA 60.251 55.000 21.78 0.00 35.36 4.02
6039 8479 0.108898 CAGCCAAGAGAGTCTCGGTG 60.109 60.000 14.47 15.40 35.36 4.94
6041 8481 0.172352 GTCAGCCAAGAGAGTCTCGG 59.828 60.000 14.47 11.58 35.36 4.63
6056 8496 5.503662 TGTGCAATATTAAGGCATGTCAG 57.496 39.130 0.00 0.00 40.05 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.