Multiple sequence alignment - TraesCS5A01G522000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G522000 chr5A 100.000 4153 0 0 1 4153 683234699 683230547 0.000000e+00 7670.0
1 TraesCS5A01G522000 chr4D 91.334 2804 138 55 725 3478 500852232 500849484 0.000000e+00 3735.0
2 TraesCS5A01G522000 chr4D 87.952 830 47 23 2653 3473 500887206 500886421 0.000000e+00 929.0
3 TraesCS5A01G522000 chr4D 87.410 834 52 26 2654 3478 500924730 500923941 0.000000e+00 909.0
4 TraesCS5A01G522000 chr4D 87.410 834 52 26 2654 3478 500961161 500960372 0.000000e+00 909.0
5 TraesCS5A01G522000 chr4D 87.305 835 53 26 2653 3478 500983989 500983199 0.000000e+00 905.0
6 TraesCS5A01G522000 chr4D 86.473 414 52 2 3741 4152 500885478 500885067 6.330000e-123 451.0
7 TraesCS5A01G522000 chr4D 86.265 415 51 3 3741 4152 500982260 500981849 2.950000e-121 446.0
8 TraesCS5A01G522000 chr4D 85.266 414 57 2 3741 4152 500913354 500912943 1.380000e-114 424.0
9 TraesCS5A01G522000 chr4D 85.266 414 57 2 3741 4152 500951210 500950799 1.380000e-114 424.0
10 TraesCS5A01G522000 chr4D 88.272 162 14 3 687 848 500929370 500929526 5.480000e-44 189.0
11 TraesCS5A01G522000 chr4D 88.272 162 14 3 687 848 500965285 500965441 5.480000e-44 189.0
12 TraesCS5A01G522000 chr4D 100.000 31 0 0 4121 4151 72341824 72341794 1.610000e-04 58.4
13 TraesCS5A01G522000 chr4B 91.643 2501 121 39 723 3188 644828703 644826256 0.000000e+00 3380.0
14 TraesCS5A01G522000 chrUn 99.049 526 5 0 1 526 363083598 363083073 0.000000e+00 944.0
15 TraesCS5A01G522000 chrUn 87.410 834 52 26 2654 3478 317844987 317845776 0.000000e+00 909.0
16 TraesCS5A01G522000 chrUn 80.973 473 67 16 43 512 58376201 58376653 1.840000e-93 353.0
17 TraesCS5A01G522000 chrUn 100.000 57 0 0 1 57 292085813 292085869 5.680000e-19 106.0
18 TraesCS5A01G522000 chrUn 100.000 57 0 0 1 57 475180320 475180264 5.680000e-19 106.0
19 TraesCS5A01G522000 chr3A 97.645 467 8 1 1 467 204202699 204203162 0.000000e+00 798.0
20 TraesCS5A01G522000 chr1A 85.512 635 82 8 1148 1779 338590566 338589939 0.000000e+00 654.0
21 TraesCS5A01G522000 chr1A 83.249 591 83 11 2393 2978 338589537 338588958 2.840000e-146 529.0
22 TraesCS5A01G522000 chr1A 87.826 345 36 5 1892 2233 338589928 338589587 2.330000e-107 399.0
23 TraesCS5A01G522000 chr1D 85.420 631 78 11 1142 1768 261734468 261735088 0.000000e+00 643.0
24 TraesCS5A01G522000 chr1D 83.276 586 82 12 2389 2969 261735499 261736073 3.680000e-145 525.0
25 TraesCS5A01G522000 chr1D 88.116 345 35 5 1892 2233 261735112 261735453 5.000000e-109 405.0
26 TraesCS5A01G522000 chr1B 85.577 624 78 9 1148 1768 350399123 350398509 0.000000e+00 643.0
27 TraesCS5A01G522000 chr1B 88.081 344 35 5 1893 2233 350398484 350398144 1.800000e-108 403.0
28 TraesCS5A01G522000 chr1B 86.777 242 28 2 233 473 569879752 569879990 2.460000e-67 267.0
29 TraesCS5A01G522000 chr1B 94.595 37 2 0 4115 4151 599112118 599112154 1.610000e-04 58.4
30 TraesCS5A01G522000 chr2A 78.777 556 106 12 1150 1699 652332089 652331540 3.050000e-96 363.0
31 TraesCS5A01G522000 chr2A 94.286 35 2 0 4115 4149 308557383 308557417 2.000000e-03 54.7
32 TraesCS5A01G522000 chr7A 97.297 37 1 0 4114 4150 543815883 543815919 3.470000e-06 63.9
33 TraesCS5A01G522000 chr6A 94.595 37 2 0 4115 4151 252033148 252033184 1.610000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G522000 chr5A 683230547 683234699 4152 True 7670.000000 7670 100.0000 1 4153 1 chr5A.!!$R1 4152
1 TraesCS5A01G522000 chr4D 500849484 500852232 2748 True 3735.000000 3735 91.3340 725 3478 1 chr4D.!!$R2 2753
2 TraesCS5A01G522000 chr4D 500923941 500924730 789 True 909.000000 909 87.4100 2654 3478 1 chr4D.!!$R4 824
3 TraesCS5A01G522000 chr4D 500960372 500961161 789 True 909.000000 909 87.4100 2654 3478 1 chr4D.!!$R6 824
4 TraesCS5A01G522000 chr4D 500885067 500887206 2139 True 690.000000 929 87.2125 2653 4152 2 chr4D.!!$R7 1499
5 TraesCS5A01G522000 chr4D 500981849 500983989 2140 True 675.500000 905 86.7850 2653 4152 2 chr4D.!!$R8 1499
6 TraesCS5A01G522000 chr4B 644826256 644828703 2447 True 3380.000000 3380 91.6430 723 3188 1 chr4B.!!$R1 2465
7 TraesCS5A01G522000 chrUn 363083073 363083598 525 True 944.000000 944 99.0490 1 526 1 chrUn.!!$R1 525
8 TraesCS5A01G522000 chrUn 317844987 317845776 789 False 909.000000 909 87.4100 2654 3478 1 chrUn.!!$F3 824
9 TraesCS5A01G522000 chr1A 338588958 338590566 1608 True 527.333333 654 85.5290 1148 2978 3 chr1A.!!$R1 1830
10 TraesCS5A01G522000 chr1D 261734468 261736073 1605 False 524.333333 643 85.6040 1142 2969 3 chr1D.!!$F1 1827
11 TraesCS5A01G522000 chr1B 350398144 350399123 979 True 523.000000 643 86.8290 1148 2233 2 chr1B.!!$R1 1085
12 TraesCS5A01G522000 chr2A 652331540 652332089 549 True 363.000000 363 78.7770 1150 1699 1 chr2A.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
672 673 0.037232 AGCAGGAGCAAAGGTACGTC 60.037 55.0 0.00 0.0 45.49 4.34 F
1842 1864 0.100682 CGTGGTCGATCGGTCTGAAT 59.899 55.0 16.41 0.0 39.71 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 1867 0.454285 GCACACGCACGCATACATTT 60.454 50.0 0.0 0.0 38.36 2.32 R
3594 4389 0.037232 GCTACAACCTCCAGCTCGTT 60.037 55.0 0.0 0.0 32.46 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
230 231 7.041635 TGGCAGTAATACTAGTAATGCGTTA 57.958 36.000 6.70 0.00 33.08 3.18
367 368 4.643953 CGACGTTGGTATTGTTACATTGG 58.356 43.478 0.00 0.00 0.00 3.16
368 369 4.436317 CGACGTTGGTATTGTTACATTGGG 60.436 45.833 0.00 0.00 0.00 4.12
369 370 4.653868 ACGTTGGTATTGTTACATTGGGA 58.346 39.130 0.00 0.00 0.00 4.37
370 371 5.258051 ACGTTGGTATTGTTACATTGGGAT 58.742 37.500 0.00 0.00 0.00 3.85
371 372 5.124776 ACGTTGGTATTGTTACATTGGGATG 59.875 40.000 0.00 0.00 39.25 3.51
372 373 5.348164 GTTGGTATTGTTACATTGGGATGC 58.652 41.667 0.00 0.00 36.72 3.91
373 374 3.629855 TGGTATTGTTACATTGGGATGCG 59.370 43.478 0.00 0.00 36.72 4.73
374 375 3.004315 GGTATTGTTACATTGGGATGCGG 59.996 47.826 0.00 0.00 36.72 5.69
375 376 1.468985 TTGTTACATTGGGATGCGGG 58.531 50.000 0.00 0.00 36.72 6.13
376 377 0.395036 TGTTACATTGGGATGCGGGG 60.395 55.000 0.00 0.00 36.72 5.73
377 378 1.454847 TTACATTGGGATGCGGGGC 60.455 57.895 0.00 0.00 36.72 5.80
378 379 2.920076 TTACATTGGGATGCGGGGCC 62.920 60.000 0.00 0.00 36.72 5.80
399 400 4.351938 CACGTCCAAGCGGTCCGA 62.352 66.667 17.49 0.00 35.98 4.55
400 401 3.379445 ACGTCCAAGCGGTCCGAT 61.379 61.111 17.49 5.54 35.98 4.18
401 402 2.885644 CGTCCAAGCGGTCCGATG 60.886 66.667 17.49 12.86 31.95 3.84
402 403 2.511600 GTCCAAGCGGTCCGATGG 60.512 66.667 23.61 23.61 36.95 3.51
403 404 3.000819 TCCAAGCGGTCCGATGGT 61.001 61.111 26.51 2.38 36.94 3.55
404 405 2.819595 CCAAGCGGTCCGATGGTG 60.820 66.667 22.09 10.56 33.10 4.17
405 406 3.499737 CAAGCGGTCCGATGGTGC 61.500 66.667 17.49 0.00 0.00 5.01
406 407 3.706373 AAGCGGTCCGATGGTGCT 61.706 61.111 17.49 0.00 37.53 4.40
407 408 3.958147 AAGCGGTCCGATGGTGCTG 62.958 63.158 17.49 0.00 35.77 4.41
408 409 4.760047 GCGGTCCGATGGTGCTGT 62.760 66.667 17.49 0.00 0.00 4.40
409 410 2.889617 CGGTCCGATGGTGCTGTA 59.110 61.111 4.91 0.00 0.00 2.74
410 411 1.226974 CGGTCCGATGGTGCTGTAG 60.227 63.158 4.91 0.00 0.00 2.74
411 412 1.898154 GGTCCGATGGTGCTGTAGT 59.102 57.895 0.00 0.00 0.00 2.73
412 413 0.460284 GGTCCGATGGTGCTGTAGTG 60.460 60.000 0.00 0.00 0.00 2.74
413 414 0.246635 GTCCGATGGTGCTGTAGTGT 59.753 55.000 0.00 0.00 0.00 3.55
414 415 0.246360 TCCGATGGTGCTGTAGTGTG 59.754 55.000 0.00 0.00 0.00 3.82
415 416 0.740868 CCGATGGTGCTGTAGTGTGG 60.741 60.000 0.00 0.00 0.00 4.17
416 417 1.361668 CGATGGTGCTGTAGTGTGGC 61.362 60.000 0.00 0.00 0.00 5.01
417 418 1.002134 ATGGTGCTGTAGTGTGGCC 60.002 57.895 0.00 0.00 0.00 5.36
418 419 2.742372 GGTGCTGTAGTGTGGCCG 60.742 66.667 0.00 0.00 0.00 6.13
419 420 2.742372 GTGCTGTAGTGTGGCCGG 60.742 66.667 0.00 0.00 0.00 6.13
420 421 2.920384 TGCTGTAGTGTGGCCGGA 60.920 61.111 5.05 0.00 0.00 5.14
421 422 2.125512 GCTGTAGTGTGGCCGGAG 60.126 66.667 5.05 0.00 0.00 4.63
422 423 2.125512 CTGTAGTGTGGCCGGAGC 60.126 66.667 5.05 0.00 38.76 4.70
423 424 3.989698 CTGTAGTGTGGCCGGAGCG 62.990 68.421 5.05 0.00 41.24 5.03
427 428 4.830765 GTGTGGCCGGAGCGCATA 62.831 66.667 11.47 0.00 41.24 3.14
428 429 4.089239 TGTGGCCGGAGCGCATAA 62.089 61.111 11.47 0.00 41.24 1.90
429 430 2.591715 GTGGCCGGAGCGCATAAT 60.592 61.111 11.47 0.00 41.24 1.28
430 431 2.186826 GTGGCCGGAGCGCATAATT 61.187 57.895 11.47 0.00 41.24 1.40
431 432 0.882927 GTGGCCGGAGCGCATAATTA 60.883 55.000 11.47 0.00 41.24 1.40
432 433 0.602638 TGGCCGGAGCGCATAATTAG 60.603 55.000 11.47 0.00 41.24 1.73
433 434 1.298859 GGCCGGAGCGCATAATTAGG 61.299 60.000 11.47 3.83 41.24 2.69
434 435 0.602905 GCCGGAGCGCATAATTAGGT 60.603 55.000 11.47 0.00 0.00 3.08
435 436 1.337447 GCCGGAGCGCATAATTAGGTA 60.337 52.381 11.47 0.00 0.00 3.08
436 437 2.868839 GCCGGAGCGCATAATTAGGTAA 60.869 50.000 11.47 0.00 0.00 2.85
437 438 3.596214 CCGGAGCGCATAATTAGGTAAT 58.404 45.455 11.47 0.00 0.00 1.89
438 439 3.617263 CCGGAGCGCATAATTAGGTAATC 59.383 47.826 11.47 0.00 0.00 1.75
439 440 4.495422 CGGAGCGCATAATTAGGTAATCT 58.505 43.478 11.47 0.00 0.00 2.40
440 441 5.393787 CCGGAGCGCATAATTAGGTAATCTA 60.394 44.000 11.47 0.00 0.00 1.98
441 442 5.515626 CGGAGCGCATAATTAGGTAATCTAC 59.484 44.000 11.47 0.00 0.00 2.59
442 443 5.515626 GGAGCGCATAATTAGGTAATCTACG 59.484 44.000 11.47 0.00 0.00 3.51
443 444 4.863131 AGCGCATAATTAGGTAATCTACGC 59.137 41.667 11.47 7.60 35.65 4.42
444 445 4.259292 GCGCATAATTAGGTAATCTACGCG 60.259 45.833 3.53 3.53 40.66 6.01
445 446 4.855388 CGCATAATTAGGTAATCTACGCGT 59.145 41.667 19.17 19.17 33.64 6.01
446 447 6.023435 CGCATAATTAGGTAATCTACGCGTA 58.977 40.000 19.40 19.40 33.64 4.42
447 448 6.194142 CGCATAATTAGGTAATCTACGCGTAG 59.806 42.308 34.93 34.93 33.64 3.51
462 463 2.080286 CGTAGCCACACTTTAGCAGT 57.920 50.000 0.00 0.00 35.35 4.40
463 464 1.993370 CGTAGCCACACTTTAGCAGTC 59.007 52.381 0.00 0.00 30.92 3.51
464 465 2.347731 GTAGCCACACTTTAGCAGTCC 58.652 52.381 0.00 0.00 30.92 3.85
465 466 1.059913 AGCCACACTTTAGCAGTCCT 58.940 50.000 0.00 0.00 30.92 3.85
466 467 2.257207 AGCCACACTTTAGCAGTCCTA 58.743 47.619 0.00 0.00 30.92 2.94
467 468 2.840651 AGCCACACTTTAGCAGTCCTAT 59.159 45.455 0.00 0.00 30.92 2.57
468 469 4.030913 AGCCACACTTTAGCAGTCCTATA 58.969 43.478 0.00 0.00 30.92 1.31
469 470 4.656112 AGCCACACTTTAGCAGTCCTATAT 59.344 41.667 0.00 0.00 30.92 0.86
470 471 5.839063 AGCCACACTTTAGCAGTCCTATATA 59.161 40.000 0.00 0.00 30.92 0.86
471 472 6.498651 AGCCACACTTTAGCAGTCCTATATAT 59.501 38.462 0.00 0.00 30.92 0.86
472 473 7.674348 AGCCACACTTTAGCAGTCCTATATATA 59.326 37.037 0.00 0.00 30.92 0.86
473 474 8.478877 GCCACACTTTAGCAGTCCTATATATAT 58.521 37.037 0.00 0.00 30.92 0.86
553 554 9.898152 TTTAAAAACATGAGGATTTCTTGGTTT 57.102 25.926 0.00 1.60 46.77 3.27
554 555 7.790823 AAAAACATGAGGATTTCTTGGTTTG 57.209 32.000 0.00 0.00 45.12 2.93
555 556 5.473066 AACATGAGGATTTCTTGGTTTGG 57.527 39.130 0.00 0.00 35.76 3.28
556 557 4.739793 ACATGAGGATTTCTTGGTTTGGA 58.260 39.130 0.00 0.00 35.76 3.53
557 558 4.524328 ACATGAGGATTTCTTGGTTTGGAC 59.476 41.667 0.00 0.00 35.76 4.02
558 559 4.453480 TGAGGATTTCTTGGTTTGGACT 57.547 40.909 0.00 0.00 0.00 3.85
559 560 4.144297 TGAGGATTTCTTGGTTTGGACTG 58.856 43.478 0.00 0.00 0.00 3.51
560 561 4.141274 TGAGGATTTCTTGGTTTGGACTGA 60.141 41.667 0.00 0.00 0.00 3.41
561 562 4.145052 AGGATTTCTTGGTTTGGACTGAC 58.855 43.478 0.00 0.00 0.00 3.51
562 563 3.888930 GGATTTCTTGGTTTGGACTGACA 59.111 43.478 0.00 0.00 0.00 3.58
563 564 4.340950 GGATTTCTTGGTTTGGACTGACAA 59.659 41.667 0.00 0.00 0.00 3.18
564 565 5.163457 GGATTTCTTGGTTTGGACTGACAAA 60.163 40.000 0.00 0.00 37.96 2.83
565 566 4.981806 TTCTTGGTTTGGACTGACAAAG 57.018 40.909 0.00 0.00 40.67 2.77
566 567 3.963129 TCTTGGTTTGGACTGACAAAGT 58.037 40.909 0.00 0.00 40.67 2.66
567 568 5.105567 TCTTGGTTTGGACTGACAAAGTA 57.894 39.130 0.00 0.00 40.67 2.24
568 569 5.502079 TCTTGGTTTGGACTGACAAAGTAA 58.498 37.500 0.00 0.00 40.67 2.24
569 570 6.126409 TCTTGGTTTGGACTGACAAAGTAAT 58.874 36.000 0.00 0.00 40.67 1.89
570 571 5.766150 TGGTTTGGACTGACAAAGTAATG 57.234 39.130 0.00 0.00 40.67 1.90
571 572 5.197451 TGGTTTGGACTGACAAAGTAATGT 58.803 37.500 0.00 0.00 40.67 2.71
590 591 9.871238 AGTAATGTCACTCGATTATTAACAACT 57.129 29.630 0.00 0.00 0.00 3.16
593 594 8.771920 ATGTCACTCGATTATTAACAACTTGA 57.228 30.769 0.00 0.00 0.00 3.02
594 595 8.014322 TGTCACTCGATTATTAACAACTTGAC 57.986 34.615 0.00 0.00 0.00 3.18
595 596 7.870954 TGTCACTCGATTATTAACAACTTGACT 59.129 33.333 0.00 0.00 31.76 3.41
596 597 9.350357 GTCACTCGATTATTAACAACTTGACTA 57.650 33.333 0.00 0.00 0.00 2.59
597 598 9.350357 TCACTCGATTATTAACAACTTGACTAC 57.650 33.333 0.00 0.00 0.00 2.73
598 599 9.135843 CACTCGATTATTAACAACTTGACTACA 57.864 33.333 0.00 0.00 0.00 2.74
599 600 9.701098 ACTCGATTATTAACAACTTGACTACAA 57.299 29.630 0.00 0.00 34.65 2.41
610 611 9.893305 AACAACTTGACTACAATATTTTACTGC 57.107 29.630 0.00 0.00 35.37 4.40
611 612 9.284968 ACAACTTGACTACAATATTTTACTGCT 57.715 29.630 0.00 0.00 35.37 4.24
612 613 9.546909 CAACTTGACTACAATATTTTACTGCTG 57.453 33.333 0.00 0.00 35.37 4.41
613 614 8.268850 ACTTGACTACAATATTTTACTGCTGG 57.731 34.615 0.00 0.00 35.37 4.85
614 615 7.883311 ACTTGACTACAATATTTTACTGCTGGT 59.117 33.333 0.00 0.00 35.37 4.00
615 616 9.378551 CTTGACTACAATATTTTACTGCTGGTA 57.621 33.333 0.00 0.00 35.37 3.25
616 617 9.727859 TTGACTACAATATTTTACTGCTGGTAA 57.272 29.630 0.00 0.00 38.48 2.85
617 618 9.378551 TGACTACAATATTTTACTGCTGGTAAG 57.621 33.333 0.00 0.00 40.87 2.34
618 619 8.732746 ACTACAATATTTTACTGCTGGTAAGG 57.267 34.615 0.00 0.00 40.87 2.69
619 620 8.545472 ACTACAATATTTTACTGCTGGTAAGGA 58.455 33.333 0.00 0.00 40.87 3.36
620 621 9.561069 CTACAATATTTTACTGCTGGTAAGGAT 57.439 33.333 0.00 2.26 40.87 3.24
621 622 8.823220 ACAATATTTTACTGCTGGTAAGGATT 57.177 30.769 0.00 0.00 40.87 3.01
622 623 8.686334 ACAATATTTTACTGCTGGTAAGGATTG 58.314 33.333 18.17 18.17 40.87 2.67
623 624 5.582689 ATTTTACTGCTGGTAAGGATTGC 57.417 39.130 0.00 0.00 40.87 3.56
624 625 3.712016 TTACTGCTGGTAAGGATTGCA 57.288 42.857 0.00 0.00 35.69 4.08
625 626 1.826385 ACTGCTGGTAAGGATTGCAC 58.174 50.000 0.00 0.00 29.70 4.57
626 627 1.098050 CTGCTGGTAAGGATTGCACC 58.902 55.000 0.00 0.00 29.70 5.01
627 628 0.698238 TGCTGGTAAGGATTGCACCT 59.302 50.000 0.00 0.00 42.69 4.00
628 629 1.098050 GCTGGTAAGGATTGCACCTG 58.902 55.000 0.00 0.00 40.49 4.00
629 630 1.755179 CTGGTAAGGATTGCACCTGG 58.245 55.000 0.00 0.00 40.49 4.45
630 631 1.281867 CTGGTAAGGATTGCACCTGGA 59.718 52.381 0.00 0.00 40.49 3.86
631 632 1.281867 TGGTAAGGATTGCACCTGGAG 59.718 52.381 0.00 0.00 40.49 3.86
632 633 1.559682 GGTAAGGATTGCACCTGGAGA 59.440 52.381 0.00 0.00 40.49 3.71
633 634 2.173569 GGTAAGGATTGCACCTGGAGAT 59.826 50.000 0.00 0.00 40.49 2.75
634 635 2.431954 AAGGATTGCACCTGGAGATG 57.568 50.000 0.00 0.00 40.49 2.90
635 636 0.106819 AGGATTGCACCTGGAGATGC 60.107 55.000 0.00 0.00 42.40 3.91
636 637 1.105759 GGATTGCACCTGGAGATGCC 61.106 60.000 0.00 0.00 41.33 4.40
637 638 1.076485 ATTGCACCTGGAGATGCCC 60.076 57.895 0.00 0.00 41.33 5.36
638 639 1.578215 ATTGCACCTGGAGATGCCCT 61.578 55.000 0.00 0.00 41.33 5.19
639 640 0.913934 TTGCACCTGGAGATGCCCTA 60.914 55.000 0.00 0.00 41.33 3.53
640 641 0.913934 TGCACCTGGAGATGCCCTAA 60.914 55.000 0.00 0.00 41.33 2.69
641 642 0.179034 GCACCTGGAGATGCCCTAAG 60.179 60.000 0.00 0.00 35.73 2.18
642 643 0.471617 CACCTGGAGATGCCCTAAGG 59.528 60.000 0.00 0.00 35.78 2.69
654 655 1.839424 CCCTAAGGGCAAAGACCAAG 58.161 55.000 0.00 0.00 35.35 3.61
655 656 1.177401 CCTAAGGGCAAAGACCAAGC 58.823 55.000 0.00 0.00 29.21 4.01
656 657 1.547675 CCTAAGGGCAAAGACCAAGCA 60.548 52.381 0.00 0.00 29.21 3.91
657 658 1.815003 CTAAGGGCAAAGACCAAGCAG 59.185 52.381 0.00 0.00 29.21 4.24
658 659 0.829182 AAGGGCAAAGACCAAGCAGG 60.829 55.000 0.00 0.00 45.67 4.85
659 660 1.228552 GGGCAAAGACCAAGCAGGA 60.229 57.895 1.83 0.00 41.22 3.86
660 661 1.246737 GGGCAAAGACCAAGCAGGAG 61.247 60.000 1.83 0.00 41.22 3.69
661 662 1.583477 GCAAAGACCAAGCAGGAGC 59.417 57.895 1.83 0.00 41.22 4.70
662 663 1.174712 GCAAAGACCAAGCAGGAGCA 61.175 55.000 1.83 0.00 45.49 4.26
663 664 1.321474 CAAAGACCAAGCAGGAGCAA 58.679 50.000 1.83 0.00 45.49 3.91
664 665 1.682854 CAAAGACCAAGCAGGAGCAAA 59.317 47.619 1.83 0.00 45.49 3.68
665 666 1.613836 AAGACCAAGCAGGAGCAAAG 58.386 50.000 1.83 0.00 45.49 2.77
666 667 0.251077 AGACCAAGCAGGAGCAAAGG 60.251 55.000 1.83 0.00 45.49 3.11
667 668 0.538287 GACCAAGCAGGAGCAAAGGT 60.538 55.000 1.83 0.00 45.49 3.50
668 669 0.771127 ACCAAGCAGGAGCAAAGGTA 59.229 50.000 1.83 0.00 45.49 3.08
669 670 1.168714 CCAAGCAGGAGCAAAGGTAC 58.831 55.000 0.00 0.00 45.49 3.34
670 671 0.798776 CAAGCAGGAGCAAAGGTACG 59.201 55.000 0.00 0.00 45.49 3.67
671 672 0.396811 AAGCAGGAGCAAAGGTACGT 59.603 50.000 0.00 0.00 45.49 3.57
672 673 0.037232 AGCAGGAGCAAAGGTACGTC 60.037 55.000 0.00 0.00 45.49 4.34
673 674 1.019805 GCAGGAGCAAAGGTACGTCC 61.020 60.000 0.00 0.00 41.58 4.79
674 675 0.320374 CAGGAGCAAAGGTACGTCCA 59.680 55.000 0.00 0.00 39.02 4.02
675 676 0.608640 AGGAGCAAAGGTACGTCCAG 59.391 55.000 0.00 0.00 39.02 3.86
676 677 0.606604 GGAGCAAAGGTACGTCCAGA 59.393 55.000 0.00 0.00 39.02 3.86
677 678 1.207329 GGAGCAAAGGTACGTCCAGAT 59.793 52.381 0.00 0.00 39.02 2.90
678 679 2.354805 GGAGCAAAGGTACGTCCAGATT 60.355 50.000 0.00 0.00 39.02 2.40
679 680 3.335579 GAGCAAAGGTACGTCCAGATTT 58.664 45.455 0.00 0.00 39.02 2.17
680 681 3.074412 AGCAAAGGTACGTCCAGATTTG 58.926 45.455 0.00 2.48 39.02 2.32
681 682 3.071479 GCAAAGGTACGTCCAGATTTGA 58.929 45.455 15.14 0.00 39.02 2.69
682 683 3.500680 GCAAAGGTACGTCCAGATTTGAA 59.499 43.478 15.14 0.00 39.02 2.69
683 684 4.378459 GCAAAGGTACGTCCAGATTTGAAG 60.378 45.833 15.14 0.00 39.02 3.02
684 685 2.973945 AGGTACGTCCAGATTTGAAGC 58.026 47.619 0.00 0.00 39.02 3.86
685 686 2.007608 GGTACGTCCAGATTTGAAGCC 58.992 52.381 0.00 0.00 35.97 4.35
686 687 2.354805 GGTACGTCCAGATTTGAAGCCT 60.355 50.000 0.00 0.00 35.97 4.58
687 688 2.568623 ACGTCCAGATTTGAAGCCTT 57.431 45.000 0.00 0.00 0.00 4.35
688 689 2.154462 ACGTCCAGATTTGAAGCCTTG 58.846 47.619 0.00 0.00 0.00 3.61
689 690 2.224523 ACGTCCAGATTTGAAGCCTTGA 60.225 45.455 0.00 0.00 0.00 3.02
690 691 2.813754 CGTCCAGATTTGAAGCCTTGAA 59.186 45.455 0.00 0.00 0.00 2.69
691 692 3.120060 CGTCCAGATTTGAAGCCTTGAAG 60.120 47.826 0.00 0.00 0.00 3.02
692 693 3.192212 GTCCAGATTTGAAGCCTTGAAGG 59.808 47.826 6.92 6.92 38.80 3.46
693 694 3.160269 CCAGATTTGAAGCCTTGAAGGT 58.840 45.455 13.58 0.00 37.80 3.50
694 695 3.575687 CCAGATTTGAAGCCTTGAAGGTT 59.424 43.478 13.58 3.41 37.80 3.50
695 696 4.766891 CCAGATTTGAAGCCTTGAAGGTTA 59.233 41.667 13.58 0.00 37.80 2.85
696 697 5.335976 CCAGATTTGAAGCCTTGAAGGTTAC 60.336 44.000 13.58 5.07 37.80 2.50
697 698 4.455877 AGATTTGAAGCCTTGAAGGTTACG 59.544 41.667 13.58 0.00 37.80 3.18
698 699 2.922740 TGAAGCCTTGAAGGTTACGT 57.077 45.000 13.58 0.00 37.80 3.57
699 700 2.762745 TGAAGCCTTGAAGGTTACGTC 58.237 47.619 13.58 4.86 37.80 4.34
700 701 2.074576 GAAGCCTTGAAGGTTACGTCC 58.925 52.381 13.58 0.00 37.80 4.79
701 702 1.053424 AGCCTTGAAGGTTACGTCCA 58.947 50.000 13.58 0.00 37.80 4.02
702 703 1.154197 GCCTTGAAGGTTACGTCCAC 58.846 55.000 13.58 0.00 37.80 4.02
703 704 1.270678 GCCTTGAAGGTTACGTCCACT 60.271 52.381 13.58 0.00 37.80 4.00
704 705 2.413837 CCTTGAAGGTTACGTCCACTG 58.586 52.381 2.25 0.00 0.00 3.66
705 706 2.036733 CCTTGAAGGTTACGTCCACTGA 59.963 50.000 2.25 0.00 0.00 3.41
706 707 3.493699 CCTTGAAGGTTACGTCCACTGAA 60.494 47.826 2.25 0.00 0.00 3.02
707 708 4.315803 CTTGAAGGTTACGTCCACTGAAT 58.684 43.478 0.00 0.00 0.00 2.57
708 709 3.921677 TGAAGGTTACGTCCACTGAATC 58.078 45.455 0.00 0.00 0.00 2.52
709 710 3.576982 TGAAGGTTACGTCCACTGAATCT 59.423 43.478 0.00 0.00 0.00 2.40
710 711 3.870633 AGGTTACGTCCACTGAATCTC 57.129 47.619 0.00 0.00 0.00 2.75
711 712 3.432378 AGGTTACGTCCACTGAATCTCT 58.568 45.455 0.00 0.00 0.00 3.10
712 713 3.833070 AGGTTACGTCCACTGAATCTCTT 59.167 43.478 0.00 0.00 0.00 2.85
713 714 4.082136 AGGTTACGTCCACTGAATCTCTTC 60.082 45.833 0.00 0.00 0.00 2.87
714 715 4.082136 GGTTACGTCCACTGAATCTCTTCT 60.082 45.833 0.00 0.00 32.29 2.85
715 716 3.859411 ACGTCCACTGAATCTCTTCTC 57.141 47.619 0.00 0.00 32.29 2.87
716 717 2.494073 ACGTCCACTGAATCTCTTCTCC 59.506 50.000 0.00 0.00 32.29 3.71
717 718 2.493675 CGTCCACTGAATCTCTTCTCCA 59.506 50.000 0.00 0.00 32.29 3.86
718 719 3.131933 CGTCCACTGAATCTCTTCTCCAT 59.868 47.826 0.00 0.00 32.29 3.41
719 720 4.692228 GTCCACTGAATCTCTTCTCCATC 58.308 47.826 0.00 0.00 32.29 3.51
720 721 4.161189 GTCCACTGAATCTCTTCTCCATCA 59.839 45.833 0.00 0.00 32.29 3.07
721 722 4.161189 TCCACTGAATCTCTTCTCCATCAC 59.839 45.833 0.00 0.00 32.29 3.06
722 723 4.081254 CCACTGAATCTCTTCTCCATCACA 60.081 45.833 0.00 0.00 32.29 3.58
723 724 4.869297 CACTGAATCTCTTCTCCATCACAC 59.131 45.833 0.00 0.00 32.29 3.82
724 725 4.111198 CTGAATCTCTTCTCCATCACACG 58.889 47.826 0.00 0.00 32.29 4.49
725 726 3.763897 TGAATCTCTTCTCCATCACACGA 59.236 43.478 0.00 0.00 32.29 4.35
726 727 3.791973 ATCTCTTCTCCATCACACGAC 57.208 47.619 0.00 0.00 0.00 4.34
727 728 2.796557 TCTCTTCTCCATCACACGACT 58.203 47.619 0.00 0.00 0.00 4.18
743 744 1.699343 GACTAACACTCACTCGCCAC 58.301 55.000 0.00 0.00 0.00 5.01
829 830 0.106669 TCATCACTCGTCCGGATCCT 60.107 55.000 7.81 0.00 0.00 3.24
885 888 2.687200 ACCGCATCTGCACCCCTA 60.687 61.111 2.72 0.00 42.21 3.53
935 938 0.679505 TCGATTCACGATCCCCATCC 59.320 55.000 0.00 0.00 46.45 3.51
949 952 7.182026 ACGATCCCCATCCATCTATATAAACAA 59.818 37.037 0.00 0.00 0.00 2.83
996 999 5.753744 CGAAGCTAGATTACTCTGACGAAT 58.246 41.667 0.00 0.00 32.66 3.34
1006 1009 0.726827 TCTGACGAATTTCATGGCGC 59.273 50.000 0.00 0.00 0.00 6.53
1042 1045 3.166490 TTACCCGTGGCGCTTGTCA 62.166 57.895 7.64 0.00 0.00 3.58
1068 1071 2.861006 GCGGTTCTTGGCTCGTTC 59.139 61.111 0.00 0.00 0.00 3.95
1089 1092 3.443925 CTCAGACTCGCCGCCTCA 61.444 66.667 0.00 0.00 0.00 3.86
1113 1122 2.186384 CAGGGAGAGGAAGCTGCG 59.814 66.667 0.00 0.00 0.00 5.18
1116 1125 4.168291 GGAGAGGAAGCTGCGGGG 62.168 72.222 0.00 0.00 0.00 5.73
1799 1814 4.520846 GTACATGCAGCGCACGCC 62.521 66.667 17.78 0.00 43.04 5.68
1841 1863 0.956902 TCGTGGTCGATCGGTCTGAA 60.957 55.000 16.41 0.00 41.35 3.02
1842 1864 0.100682 CGTGGTCGATCGGTCTGAAT 59.899 55.000 16.41 0.00 39.71 2.57
1844 1866 1.927174 GTGGTCGATCGGTCTGAATTG 59.073 52.381 16.41 0.00 0.00 2.32
1845 1867 1.822371 TGGTCGATCGGTCTGAATTGA 59.178 47.619 16.41 0.00 0.00 2.57
2286 2311 2.867624 CATGTTCTCCCCCATGGTATG 58.132 52.381 11.73 0.00 35.82 2.39
2320 2353 4.124238 CTCCAAACTAACTCCAAACGTGA 58.876 43.478 0.00 0.00 0.00 4.35
2364 2397 1.816074 GACGGTGCCCTTGATTAACA 58.184 50.000 0.00 0.00 0.00 2.41
2366 2399 1.883926 ACGGTGCCCTTGATTAACAAC 59.116 47.619 0.00 0.00 34.56 3.32
2367 2400 1.135803 CGGTGCCCTTGATTAACAACG 60.136 52.381 0.00 0.00 34.56 4.10
2370 2403 2.812011 GTGCCCTTGATTAACAACGACT 59.188 45.455 0.00 0.00 34.56 4.18
2371 2404 3.071479 TGCCCTTGATTAACAACGACTC 58.929 45.455 0.00 0.00 34.56 3.36
2372 2405 3.071479 GCCCTTGATTAACAACGACTCA 58.929 45.455 0.00 0.00 34.56 3.41
2374 2407 4.201822 GCCCTTGATTAACAACGACTCATC 60.202 45.833 0.00 0.00 34.56 2.92
2979 3015 1.003355 CGGCAGGTCAGACCAACAT 60.003 57.895 22.31 0.00 41.95 2.71
2980 3016 0.249120 CGGCAGGTCAGACCAACATA 59.751 55.000 22.31 0.00 41.95 2.29
2981 3017 1.739067 GGCAGGTCAGACCAACATAC 58.261 55.000 22.31 3.93 41.95 2.39
2982 3018 1.359848 GCAGGTCAGACCAACATACG 58.640 55.000 22.31 2.18 41.95 3.06
2983 3019 1.067142 GCAGGTCAGACCAACATACGA 60.067 52.381 22.31 0.00 41.95 3.43
2984 3020 2.611971 GCAGGTCAGACCAACATACGAA 60.612 50.000 22.31 0.00 41.95 3.85
3001 3039 6.428159 ACATACGAATTCTTTCTGCTTCAACT 59.572 34.615 3.52 0.00 0.00 3.16
3002 3040 5.349824 ACGAATTCTTTCTGCTTCAACTC 57.650 39.130 3.52 0.00 0.00 3.01
3003 3041 5.059833 ACGAATTCTTTCTGCTTCAACTCT 58.940 37.500 3.52 0.00 0.00 3.24
3019 3057 3.676291 ACTCTTCTTCTTCTCCTGCAC 57.324 47.619 0.00 0.00 0.00 4.57
3080 3140 4.346730 TCATTTGCCTGTCTTTGGATGAT 58.653 39.130 0.00 0.00 0.00 2.45
3081 3141 4.400251 TCATTTGCCTGTCTTTGGATGATC 59.600 41.667 0.00 0.00 0.00 2.92
3082 3142 3.438216 TTGCCTGTCTTTGGATGATCA 57.562 42.857 0.00 0.00 0.00 2.92
3112 3172 0.620556 AACAGGTACATGGGGCTCAG 59.379 55.000 12.79 0.00 0.00 3.35
3173 3237 1.595489 GCATGTGCATTCGATCCGTTC 60.595 52.381 0.00 0.00 41.59 3.95
3185 3249 6.435430 TTCGATCCGTTCATTCATTTCATT 57.565 33.333 0.00 0.00 0.00 2.57
3190 3254 4.097714 CCGTTCATTCATTTCATTCACGG 58.902 43.478 0.00 0.00 38.78 4.94
3191 3255 3.543494 CGTTCATTCATTTCATTCACGGC 59.457 43.478 0.00 0.00 0.00 5.68
3192 3256 3.403613 TCATTCATTTCATTCACGGCG 57.596 42.857 4.80 4.80 0.00 6.46
3193 3257 2.097304 TCATTCATTTCATTCACGGCGG 59.903 45.455 13.24 0.00 0.00 6.13
3194 3258 1.529226 TTCATTTCATTCACGGCGGT 58.471 45.000 13.24 0.00 0.00 5.68
3221 3291 2.267961 CCAGCCTCCAACCGTACC 59.732 66.667 0.00 0.00 0.00 3.34
3240 3310 0.449388 CTTCATGCTTCCTTCGTGCC 59.551 55.000 0.00 0.00 0.00 5.01
3241 3311 1.298157 TTCATGCTTCCTTCGTGCCG 61.298 55.000 0.00 0.00 0.00 5.69
3262 3332 2.117156 CGGGCTGCTTGGGAGATTG 61.117 63.158 0.00 0.00 0.00 2.67
3288 3358 6.405278 TGGGATTTCTTGTTTCTTTCTTCC 57.595 37.500 0.00 0.00 0.00 3.46
3304 3374 6.828273 TCTTTCTTCCAGAGATTGTTTTGTGA 59.172 34.615 0.00 0.00 33.49 3.58
3307 3377 5.885352 TCTTCCAGAGATTGTTTTGTGAACA 59.115 36.000 0.00 0.00 0.00 3.18
3308 3378 5.756195 TCCAGAGATTGTTTTGTGAACAG 57.244 39.130 0.00 0.00 0.00 3.16
3309 3379 4.036734 TCCAGAGATTGTTTTGTGAACAGC 59.963 41.667 0.00 0.00 0.00 4.40
3310 3380 4.037208 CCAGAGATTGTTTTGTGAACAGCT 59.963 41.667 0.00 0.00 0.00 4.24
3311 3381 4.974275 CAGAGATTGTTTTGTGAACAGCTG 59.026 41.667 13.48 13.48 0.00 4.24
3312 3382 4.037208 AGAGATTGTTTTGTGAACAGCTGG 59.963 41.667 19.93 0.00 0.00 4.85
3313 3383 3.701040 AGATTGTTTTGTGAACAGCTGGT 59.299 39.130 19.93 12.79 0.00 4.00
3314 3384 3.951775 TTGTTTTGTGAACAGCTGGTT 57.048 38.095 19.93 9.92 44.10 3.67
3315 3385 3.229276 TGTTTTGTGAACAGCTGGTTG 57.771 42.857 19.93 0.00 40.63 3.77
3316 3386 2.560542 TGTTTTGTGAACAGCTGGTTGT 59.439 40.909 19.93 0.00 40.63 3.32
3317 3387 3.006323 TGTTTTGTGAACAGCTGGTTGTT 59.994 39.130 19.93 3.33 43.61 2.83
3318 3388 4.218635 TGTTTTGTGAACAGCTGGTTGTTA 59.781 37.500 19.93 0.00 41.15 2.41
3319 3389 4.630894 TTTGTGAACAGCTGGTTGTTAG 57.369 40.909 19.93 0.00 41.15 2.34
3335 3405 6.999272 TGGTTGTTAGTGGTTACATACACATT 59.001 34.615 0.00 0.00 39.99 2.71
3336 3406 7.502895 TGGTTGTTAGTGGTTACATACACATTT 59.497 33.333 0.00 0.00 39.99 2.32
3337 3407 7.806014 GGTTGTTAGTGGTTACATACACATTTG 59.194 37.037 0.00 0.00 39.99 2.32
3338 3408 8.347035 GTTGTTAGTGGTTACATACACATTTGT 58.653 33.333 0.00 0.00 39.99 2.83
3383 3453 9.982291 TTATTGTAACGCTTGTGAGATAAAATC 57.018 29.630 0.00 0.00 0.00 2.17
3384 3454 7.428282 TTGTAACGCTTGTGAGATAAAATCA 57.572 32.000 0.00 0.00 0.00 2.57
3414 3484 3.607422 TGTGAGATCAAACACTTTGCG 57.393 42.857 15.05 0.00 40.43 4.85
3416 3486 2.548057 GTGAGATCAAACACTTTGCGGA 59.452 45.455 0.00 0.00 40.43 5.54
3444 3519 3.607422 TGTGAGATGAAACACTTTGCG 57.393 42.857 0.00 0.00 37.81 4.85
3473 3548 7.324354 TCCTTTTTATTTATACGGCCACTTC 57.676 36.000 2.24 0.00 0.00 3.01
3478 3553 1.860676 TTATACGGCCACTTCGCATC 58.139 50.000 2.24 0.00 0.00 3.91
3479 3554 0.747852 TATACGGCCACTTCGCATCA 59.252 50.000 2.24 0.00 0.00 3.07
3482 3557 2.480555 GGCCACTTCGCATCAACG 59.519 61.111 0.00 0.00 0.00 4.10
3483 3558 2.325082 GGCCACTTCGCATCAACGT 61.325 57.895 0.00 0.00 0.00 3.99
3506 4253 3.032609 CATCGCTCGCACCGGATC 61.033 66.667 9.46 0.00 0.00 3.36
3530 4277 0.810031 GGACGTTGCGCATGGACTAT 60.810 55.000 12.75 0.00 0.00 2.12
3549 4296 3.716539 TACATCGCCCGCTGCTCAC 62.717 63.158 0.00 0.00 38.05 3.51
3590 4385 4.803426 CTCCACGAGGCGGTGCTC 62.803 72.222 6.26 0.00 36.59 4.26
3609 4404 1.284982 CGTCAACGAGCTGGAGGTTG 61.285 60.000 1.44 6.48 43.02 3.77
3614 4409 1.517257 CGAGCTGGAGGTTGTAGCG 60.517 63.158 0.00 0.00 42.10 4.26
3616 4411 2.820037 GCTGGAGGTTGTAGCGCC 60.820 66.667 2.29 0.00 36.06 6.53
3617 4412 2.509336 CTGGAGGTTGTAGCGCCG 60.509 66.667 2.29 0.00 38.44 6.46
3618 4413 4.752879 TGGAGGTTGTAGCGCCGC 62.753 66.667 2.29 0.00 38.44 6.53
3620 4415 2.886124 GAGGTTGTAGCGCCGCTC 60.886 66.667 18.06 8.34 40.44 5.03
3626 4421 2.905880 GTAGCGCCGCTCCTCCTA 60.906 66.667 18.06 0.00 40.44 2.94
3628 4423 3.709348 TAGCGCCGCTCCTCCTACA 62.709 63.158 18.06 0.00 40.44 2.74
3634 4429 3.851128 GCTCCTCCTACACCCGCC 61.851 72.222 0.00 0.00 0.00 6.13
3636 4431 4.051167 TCCTCCTACACCCGCCGA 62.051 66.667 0.00 0.00 0.00 5.54
3640 4435 2.162338 CTCCTACACCCGCCGAAACA 62.162 60.000 0.00 0.00 0.00 2.83
3643 4438 3.862394 TACACCCGCCGAAACACCG 62.862 63.158 0.00 0.00 0.00 4.94
3646 4441 4.675029 CCCGCCGAAACACCGACT 62.675 66.667 0.00 0.00 0.00 4.18
3647 4442 3.411351 CCGCCGAAACACCGACTG 61.411 66.667 0.00 0.00 0.00 3.51
3648 4443 4.072088 CGCCGAAACACCGACTGC 62.072 66.667 0.00 0.00 0.00 4.40
3649 4444 2.665185 GCCGAAACACCGACTGCT 60.665 61.111 0.00 0.00 0.00 4.24
3650 4445 2.668280 GCCGAAACACCGACTGCTC 61.668 63.158 0.00 0.00 0.00 4.26
3651 4446 1.006102 CCGAAACACCGACTGCTCT 60.006 57.895 0.00 0.00 0.00 4.09
3652 4447 1.009389 CCGAAACACCGACTGCTCTC 61.009 60.000 0.00 0.00 0.00 3.20
3653 4448 1.009389 CGAAACACCGACTGCTCTCC 61.009 60.000 0.00 0.00 0.00 3.71
3654 4449 0.670854 GAAACACCGACTGCTCTCCC 60.671 60.000 0.00 0.00 0.00 4.30
3655 4450 1.407656 AAACACCGACTGCTCTCCCA 61.408 55.000 0.00 0.00 0.00 4.37
3656 4451 2.100879 AACACCGACTGCTCTCCCAC 62.101 60.000 0.00 0.00 0.00 4.61
3657 4452 2.997897 ACCGACTGCTCTCCCACC 60.998 66.667 0.00 0.00 0.00 4.61
3658 4453 2.997315 CCGACTGCTCTCCCACCA 60.997 66.667 0.00 0.00 0.00 4.17
3659 4454 2.362369 CCGACTGCTCTCCCACCAT 61.362 63.158 0.00 0.00 0.00 3.55
3660 4455 1.153489 CGACTGCTCTCCCACCATG 60.153 63.158 0.00 0.00 0.00 3.66
3661 4456 1.607801 CGACTGCTCTCCCACCATGA 61.608 60.000 0.00 0.00 0.00 3.07
3662 4457 0.107945 GACTGCTCTCCCACCATGAC 60.108 60.000 0.00 0.00 0.00 3.06
3663 4458 1.153489 CTGCTCTCCCACCATGACG 60.153 63.158 0.00 0.00 0.00 4.35
3664 4459 2.187946 GCTCTCCCACCATGACGG 59.812 66.667 0.00 0.00 42.50 4.79
3665 4460 2.187946 CTCTCCCACCATGACGGC 59.812 66.667 0.00 0.00 39.03 5.68
3666 4461 3.723235 CTCTCCCACCATGACGGCG 62.723 68.421 4.80 4.80 39.03 6.46
3667 4462 4.082523 CTCCCACCATGACGGCGT 62.083 66.667 14.65 14.65 39.03 5.68
3668 4463 3.605749 CTCCCACCATGACGGCGTT 62.606 63.158 16.19 0.00 39.03 4.84
3669 4464 3.430862 CCCACCATGACGGCGTTG 61.431 66.667 16.19 9.69 39.03 4.10
3670 4465 3.430862 CCACCATGACGGCGTTGG 61.431 66.667 24.97 24.97 39.03 3.77
3671 4466 2.358125 CACCATGACGGCGTTGGA 60.358 61.111 31.26 13.01 39.03 3.53
3672 4467 2.047274 ACCATGACGGCGTTGGAG 60.047 61.111 31.26 16.53 39.03 3.86
3673 4468 2.047274 CCATGACGGCGTTGGAGT 60.047 61.111 22.97 1.64 31.94 3.85
3674 4469 2.390599 CCATGACGGCGTTGGAGTG 61.391 63.158 22.97 12.95 31.94 3.51
3675 4470 2.742372 ATGACGGCGTTGGAGTGC 60.742 61.111 16.19 0.00 0.00 4.40
3680 4475 2.357760 GGCGTTGGAGTGCGGTTA 60.358 61.111 0.00 0.00 0.00 2.85
3681 4476 2.674084 GGCGTTGGAGTGCGGTTAC 61.674 63.158 0.00 0.00 0.00 2.50
3682 4477 3.007070 GCGTTGGAGTGCGGTTACG 62.007 63.158 0.00 0.00 44.63 3.18
3702 4497 4.314440 GGTGGGTGCGCTGACTCA 62.314 66.667 9.73 1.68 0.00 3.41
3705 4500 2.887568 GGGTGCGCTGACTCATCG 60.888 66.667 9.73 0.00 0.00 3.84
3706 4501 3.558411 GGTGCGCTGACTCATCGC 61.558 66.667 18.16 18.16 46.88 4.58
3711 4506 2.419198 GCTGACTCATCGCCGGAT 59.581 61.111 5.05 0.00 0.00 4.18
3723 4518 1.451936 GCCGGATGCCACCTCTATT 59.548 57.895 5.05 0.00 0.00 1.73
3727 4522 1.414181 CGGATGCCACCTCTATTGTCT 59.586 52.381 0.00 0.00 0.00 3.41
3728 4523 2.804572 CGGATGCCACCTCTATTGTCTG 60.805 54.545 0.00 0.00 0.00 3.51
3734 4529 2.432510 CCACCTCTATTGTCTGGTCCTC 59.567 54.545 0.00 0.00 0.00 3.71
3735 4530 2.099921 CACCTCTATTGTCTGGTCCTCG 59.900 54.545 0.00 0.00 0.00 4.63
3736 4531 1.067821 CCTCTATTGTCTGGTCCTCGC 59.932 57.143 0.00 0.00 0.00 5.03
3737 4532 1.067821 CTCTATTGTCTGGTCCTCGCC 59.932 57.143 0.00 0.00 0.00 5.54
3738 4533 0.249073 CTATTGTCTGGTCCTCGCCG 60.249 60.000 0.00 0.00 0.00 6.46
3739 4534 2.292794 TATTGTCTGGTCCTCGCCGC 62.293 60.000 0.00 0.00 0.00 6.53
3763 4558 0.743688 CTGACATCTGGCGAGCTAGT 59.256 55.000 8.26 0.00 0.00 2.57
3775 4570 0.462759 GAGCTAGTCGGCAAGCCAAT 60.463 55.000 12.19 0.66 39.64 3.16
3781 4576 1.746615 TCGGCAAGCCAATCTCAGC 60.747 57.895 12.19 0.00 35.37 4.26
3782 4577 2.768492 CGGCAAGCCAATCTCAGCC 61.768 63.158 12.19 0.00 40.50 4.85
3783 4578 2.421399 GGCAAGCCAATCTCAGCCC 61.421 63.158 6.14 0.00 38.96 5.19
3784 4579 1.679977 GCAAGCCAATCTCAGCCCA 60.680 57.895 0.00 0.00 0.00 5.36
3785 4580 1.041447 GCAAGCCAATCTCAGCCCAT 61.041 55.000 0.00 0.00 0.00 4.00
3787 4582 0.627451 AAGCCAATCTCAGCCCATCA 59.373 50.000 0.00 0.00 0.00 3.07
3788 4583 0.106819 AGCCAATCTCAGCCCATCAC 60.107 55.000 0.00 0.00 0.00 3.06
3789 4584 1.442526 GCCAATCTCAGCCCATCACG 61.443 60.000 0.00 0.00 0.00 4.35
3816 4611 1.805945 GCTTGTCAGCCGGTCGTAG 60.806 63.158 1.90 0.00 40.61 3.51
3841 4636 2.419297 CGGATAACTCCTGCTTCTGCTT 60.419 50.000 0.00 0.00 39.65 3.91
3854 4649 1.103803 TCTGCTTCGTCGATAGGCTT 58.896 50.000 13.62 0.00 39.78 4.35
3886 4681 1.812922 CAGAGCTCACGGTCATGGC 60.813 63.158 17.77 0.00 40.07 4.40
3897 4692 2.358615 TCATGGCTGACGTGGTGC 60.359 61.111 2.28 0.00 36.71 5.01
3898 4693 2.669229 CATGGCTGACGTGGTGCA 60.669 61.111 0.00 0.00 32.27 4.57
3903 4698 2.108976 CTGACGTGGTGCAGTGGT 59.891 61.111 0.00 0.00 0.00 4.16
3907 4702 3.952675 CGTGGTGCAGTGGTGTGC 61.953 66.667 0.00 0.00 44.27 4.57
3909 4704 3.807839 TGGTGCAGTGGTGTGCCT 61.808 61.111 0.00 0.00 43.28 4.75
3913 4708 1.526686 TGCAGTGGTGTGCCTGAAG 60.527 57.895 0.00 0.00 43.28 3.02
3924 4719 1.070758 GTGCCTGAAGAGGAGACAACA 59.929 52.381 0.00 0.00 42.93 3.33
3937 4732 5.741011 AGGAGACAACATTTAAATAGCGGA 58.259 37.500 0.00 0.00 0.00 5.54
3953 4748 3.626924 GACACCGGCCAGGACACT 61.627 66.667 18.74 0.00 45.00 3.55
3956 4751 4.988716 ACCGGCCAGGACACTCGA 62.989 66.667 18.74 0.00 45.00 4.04
3981 4776 2.147958 GTGAGTTAATGTGGGCGTCAA 58.852 47.619 0.00 0.00 0.00 3.18
3982 4777 2.095919 GTGAGTTAATGTGGGCGTCAAC 60.096 50.000 0.00 0.00 0.00 3.18
3992 4787 1.161563 GGGCGTCAACGAAGGTTTCA 61.162 55.000 6.75 0.00 43.02 2.69
3994 4789 0.653636 GCGTCAACGAAGGTTTCACA 59.346 50.000 6.75 0.00 43.02 3.58
3999 4794 1.782028 AACGAAGGTTTCACAGCCGC 61.782 55.000 0.00 0.00 30.42 6.53
4015 4810 1.426041 CCGCCGCGCTAGTTTAATGT 61.426 55.000 7.42 0.00 0.00 2.71
4020 4815 0.043310 GCGCTAGTTTAATGTCGCCG 60.043 55.000 0.00 0.00 37.02 6.46
4036 4831 2.214216 CCGGGCCGATGGATAGGAA 61.214 63.158 30.79 0.00 0.00 3.36
4038 4833 1.375326 GGGCCGATGGATAGGAACC 59.625 63.158 0.00 0.00 0.00 3.62
4067 4862 3.435186 GGAGCAAAGCCGTCCAGC 61.435 66.667 0.00 0.00 0.00 4.85
4073 4868 3.553095 AAAGCCGTCCAGCCCTGTC 62.553 63.158 0.00 0.00 0.00 3.51
4080 4875 4.394712 CCAGCCCTGTCCGGTCAC 62.395 72.222 0.00 0.00 0.00 3.67
4096 4891 0.038618 TCACGTGTCTCCGACATTGG 60.039 55.000 16.51 0.00 44.63 3.16
4115 4910 0.836400 GAACAGGGTGGAGACCAGGA 60.836 60.000 0.00 0.00 45.25 3.86
4117 4912 1.992277 CAGGGTGGAGACCAGGAGG 60.992 68.421 0.00 0.00 45.25 4.30
4124 4919 2.284258 AGACCAGGAGGCGCTCTT 60.284 61.111 7.64 0.00 39.06 2.85
4125 4920 2.125350 GACCAGGAGGCGCTCTTG 60.125 66.667 7.64 9.54 37.34 3.02
4149 4944 4.520846 GCGCCGCTTCAATGTCGG 62.521 66.667 0.00 6.89 45.46 4.79
4152 4947 4.513519 CCGCTTCAATGTCGGCTA 57.486 55.556 0.00 0.00 36.53 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 169 3.576356 CGTCGCCCATGCATCCAC 61.576 66.667 0.00 0.00 37.32 4.02
382 383 3.642778 ATCGGACCGCTTGGACGTG 62.643 63.158 9.66 0.00 37.71 4.49
383 384 3.379445 ATCGGACCGCTTGGACGT 61.379 61.111 9.66 0.00 37.71 4.34
384 385 2.885644 CATCGGACCGCTTGGACG 60.886 66.667 9.66 0.00 37.78 4.79
385 386 2.511600 CCATCGGACCGCTTGGAC 60.512 66.667 23.83 0.00 33.78 4.02
386 387 3.000819 ACCATCGGACCGCTTGGA 61.001 61.111 30.76 8.49 35.17 3.53
387 388 2.819595 CACCATCGGACCGCTTGG 60.820 66.667 25.45 25.45 36.46 3.61
388 389 3.499737 GCACCATCGGACCGCTTG 61.500 66.667 9.66 9.30 0.00 4.01
389 390 3.706373 AGCACCATCGGACCGCTT 61.706 61.111 9.66 0.00 0.00 4.68
390 391 4.457496 CAGCACCATCGGACCGCT 62.457 66.667 9.66 0.00 0.00 5.52
391 392 3.365291 TACAGCACCATCGGACCGC 62.365 63.158 9.66 0.00 0.00 5.68
392 393 1.226974 CTACAGCACCATCGGACCG 60.227 63.158 7.84 7.84 0.00 4.79
393 394 0.460284 CACTACAGCACCATCGGACC 60.460 60.000 0.00 0.00 0.00 4.46
394 395 0.246635 ACACTACAGCACCATCGGAC 59.753 55.000 0.00 0.00 0.00 4.79
395 396 0.246360 CACACTACAGCACCATCGGA 59.754 55.000 0.00 0.00 0.00 4.55
396 397 0.740868 CCACACTACAGCACCATCGG 60.741 60.000 0.00 0.00 0.00 4.18
397 398 1.361668 GCCACACTACAGCACCATCG 61.362 60.000 0.00 0.00 0.00 3.84
398 399 1.026718 GGCCACACTACAGCACCATC 61.027 60.000 0.00 0.00 0.00 3.51
399 400 1.002134 GGCCACACTACAGCACCAT 60.002 57.895 0.00 0.00 0.00 3.55
400 401 2.429930 GGCCACACTACAGCACCA 59.570 61.111 0.00 0.00 0.00 4.17
401 402 2.742372 CGGCCACACTACAGCACC 60.742 66.667 2.24 0.00 0.00 5.01
402 403 2.742372 CCGGCCACACTACAGCAC 60.742 66.667 2.24 0.00 0.00 4.40
403 404 2.920384 TCCGGCCACACTACAGCA 60.920 61.111 2.24 0.00 0.00 4.41
404 405 2.125512 CTCCGGCCACACTACAGC 60.126 66.667 2.24 0.00 0.00 4.40
405 406 2.125512 GCTCCGGCCACACTACAG 60.126 66.667 2.24 0.00 0.00 2.74
406 407 4.063967 CGCTCCGGCCACACTACA 62.064 66.667 2.24 0.00 34.44 2.74
410 411 4.830765 TATGCGCTCCGGCCACAC 62.831 66.667 9.73 0.00 34.44 3.82
411 412 2.884997 AATTATGCGCTCCGGCCACA 62.885 55.000 9.73 0.00 34.44 4.17
412 413 0.882927 TAATTATGCGCTCCGGCCAC 60.883 55.000 9.73 0.00 34.44 5.01
413 414 0.602638 CTAATTATGCGCTCCGGCCA 60.603 55.000 9.73 0.00 34.44 5.36
414 415 1.298859 CCTAATTATGCGCTCCGGCC 61.299 60.000 9.73 0.00 34.44 6.13
415 416 0.602905 ACCTAATTATGCGCTCCGGC 60.603 55.000 9.73 0.00 0.00 6.13
416 417 2.736144 TACCTAATTATGCGCTCCGG 57.264 50.000 9.73 0.00 0.00 5.14
417 418 4.495422 AGATTACCTAATTATGCGCTCCG 58.505 43.478 9.73 0.00 0.00 4.63
418 419 5.515626 CGTAGATTACCTAATTATGCGCTCC 59.484 44.000 9.73 0.00 0.00 4.70
419 420 5.004535 GCGTAGATTACCTAATTATGCGCTC 59.995 44.000 9.73 0.00 40.24 5.03
420 421 4.863131 GCGTAGATTACCTAATTATGCGCT 59.137 41.667 9.73 0.00 40.24 5.92
421 422 4.259292 CGCGTAGATTACCTAATTATGCGC 60.259 45.833 0.00 0.00 40.12 6.09
422 423 4.855388 ACGCGTAGATTACCTAATTATGCG 59.145 41.667 11.67 19.14 42.28 4.73
423 424 6.020837 GCTACGCGTAGATTACCTAATTATGC 60.021 42.308 42.08 22.05 35.21 3.14
424 425 6.471519 GGCTACGCGTAGATTACCTAATTATG 59.528 42.308 42.08 16.84 35.21 1.90
425 426 6.151648 TGGCTACGCGTAGATTACCTAATTAT 59.848 38.462 42.08 4.76 35.21 1.28
426 427 5.473162 TGGCTACGCGTAGATTACCTAATTA 59.527 40.000 42.08 18.60 35.21 1.40
427 428 4.279169 TGGCTACGCGTAGATTACCTAATT 59.721 41.667 42.08 5.87 35.21 1.40
428 429 3.822735 TGGCTACGCGTAGATTACCTAAT 59.177 43.478 42.08 6.35 35.21 1.73
429 430 3.003689 GTGGCTACGCGTAGATTACCTAA 59.996 47.826 42.08 19.85 35.21 2.69
430 431 2.549754 GTGGCTACGCGTAGATTACCTA 59.450 50.000 42.08 22.98 35.21 3.08
431 432 1.336125 GTGGCTACGCGTAGATTACCT 59.664 52.381 42.08 7.94 35.21 3.08
432 433 1.066002 TGTGGCTACGCGTAGATTACC 59.934 52.381 42.08 32.84 35.21 2.85
433 434 2.114825 GTGTGGCTACGCGTAGATTAC 58.885 52.381 42.08 33.24 35.21 1.89
434 435 2.019249 AGTGTGGCTACGCGTAGATTA 58.981 47.619 42.08 26.35 42.10 1.75
435 436 0.815734 AGTGTGGCTACGCGTAGATT 59.184 50.000 42.08 20.19 42.10 2.40
436 437 0.815734 AAGTGTGGCTACGCGTAGAT 59.184 50.000 42.08 20.56 42.10 1.98
437 438 0.599558 AAAGTGTGGCTACGCGTAGA 59.400 50.000 42.08 24.44 42.10 2.59
438 439 2.182825 CTAAAGTGTGGCTACGCGTAG 58.817 52.381 35.95 35.95 42.10 3.51
439 440 1.733389 GCTAAAGTGTGGCTACGCGTA 60.733 52.381 19.40 19.40 42.10 4.42
440 441 1.012486 GCTAAAGTGTGGCTACGCGT 61.012 55.000 19.17 19.17 42.10 6.01
441 442 1.011968 TGCTAAAGTGTGGCTACGCG 61.012 55.000 3.53 3.53 42.10 6.01
442 443 0.721718 CTGCTAAAGTGTGGCTACGC 59.278 55.000 5.50 5.50 37.58 4.42
443 444 1.993370 GACTGCTAAAGTGTGGCTACG 59.007 52.381 0.00 0.00 40.07 3.51
444 445 2.028020 AGGACTGCTAAAGTGTGGCTAC 60.028 50.000 0.00 0.00 40.07 3.58
445 446 2.257207 AGGACTGCTAAAGTGTGGCTA 58.743 47.619 0.00 0.00 40.07 3.93
446 447 1.059913 AGGACTGCTAAAGTGTGGCT 58.940 50.000 0.00 0.00 40.07 4.75
447 448 2.762535 TAGGACTGCTAAAGTGTGGC 57.237 50.000 0.00 0.00 40.07 5.01
527 528 9.898152 AAACCAAGAAATCCTCATGTTTTTAAA 57.102 25.926 0.00 0.00 0.00 1.52
528 529 9.323985 CAAACCAAGAAATCCTCATGTTTTTAA 57.676 29.630 0.00 0.00 0.00 1.52
529 530 7.930865 CCAAACCAAGAAATCCTCATGTTTTTA 59.069 33.333 0.00 0.00 0.00 1.52
530 531 6.767423 CCAAACCAAGAAATCCTCATGTTTTT 59.233 34.615 0.00 0.00 0.00 1.94
531 532 6.099557 TCCAAACCAAGAAATCCTCATGTTTT 59.900 34.615 0.00 0.00 0.00 2.43
532 533 5.602145 TCCAAACCAAGAAATCCTCATGTTT 59.398 36.000 0.00 0.00 0.00 2.83
533 534 5.011023 GTCCAAACCAAGAAATCCTCATGTT 59.989 40.000 0.00 0.00 0.00 2.71
534 535 4.524328 GTCCAAACCAAGAAATCCTCATGT 59.476 41.667 0.00 0.00 0.00 3.21
535 536 4.768968 AGTCCAAACCAAGAAATCCTCATG 59.231 41.667 0.00 0.00 0.00 3.07
536 537 4.768968 CAGTCCAAACCAAGAAATCCTCAT 59.231 41.667 0.00 0.00 0.00 2.90
537 538 4.141274 TCAGTCCAAACCAAGAAATCCTCA 60.141 41.667 0.00 0.00 0.00 3.86
538 539 4.216472 GTCAGTCCAAACCAAGAAATCCTC 59.784 45.833 0.00 0.00 0.00 3.71
539 540 4.145052 GTCAGTCCAAACCAAGAAATCCT 58.855 43.478 0.00 0.00 0.00 3.24
540 541 3.888930 TGTCAGTCCAAACCAAGAAATCC 59.111 43.478 0.00 0.00 0.00 3.01
541 542 5.514274 TTGTCAGTCCAAACCAAGAAATC 57.486 39.130 0.00 0.00 0.00 2.17
542 543 5.422012 ACTTTGTCAGTCCAAACCAAGAAAT 59.578 36.000 0.00 0.00 31.38 2.17
543 544 4.770010 ACTTTGTCAGTCCAAACCAAGAAA 59.230 37.500 0.00 0.00 31.38 2.52
544 545 4.340617 ACTTTGTCAGTCCAAACCAAGAA 58.659 39.130 0.00 0.00 31.38 2.52
545 546 3.963129 ACTTTGTCAGTCCAAACCAAGA 58.037 40.909 0.00 0.00 31.38 3.02
546 547 5.828299 TTACTTTGTCAGTCCAAACCAAG 57.172 39.130 0.00 0.00 36.88 3.61
547 548 5.654650 ACATTACTTTGTCAGTCCAAACCAA 59.345 36.000 0.00 0.00 36.88 3.67
548 549 5.197451 ACATTACTTTGTCAGTCCAAACCA 58.803 37.500 0.00 0.00 36.88 3.67
549 550 5.758924 GACATTACTTTGTCAGTCCAAACC 58.241 41.667 0.00 0.00 44.38 3.27
564 565 9.871238 AGTTGTTAATAATCGAGTGACATTACT 57.129 29.630 0.00 0.00 0.00 2.24
567 568 9.214957 TCAAGTTGTTAATAATCGAGTGACATT 57.785 29.630 2.11 0.00 0.00 2.71
568 569 8.656849 GTCAAGTTGTTAATAATCGAGTGACAT 58.343 33.333 2.11 0.00 0.00 3.06
569 570 7.870954 AGTCAAGTTGTTAATAATCGAGTGACA 59.129 33.333 2.11 0.00 0.00 3.58
570 571 8.240883 AGTCAAGTTGTTAATAATCGAGTGAC 57.759 34.615 2.11 0.00 0.00 3.67
571 572 9.350357 GTAGTCAAGTTGTTAATAATCGAGTGA 57.650 33.333 2.11 0.00 0.00 3.41
572 573 9.135843 TGTAGTCAAGTTGTTAATAATCGAGTG 57.864 33.333 2.11 0.00 0.00 3.51
573 574 9.701098 TTGTAGTCAAGTTGTTAATAATCGAGT 57.299 29.630 2.11 0.00 0.00 4.18
584 585 9.893305 GCAGTAAAATATTGTAGTCAAGTTGTT 57.107 29.630 2.11 0.00 36.97 2.83
585 586 9.284968 AGCAGTAAAATATTGTAGTCAAGTTGT 57.715 29.630 2.11 0.00 36.97 3.32
586 587 9.546909 CAGCAGTAAAATATTGTAGTCAAGTTG 57.453 33.333 0.00 0.00 36.97 3.16
587 588 8.730680 CCAGCAGTAAAATATTGTAGTCAAGTT 58.269 33.333 0.00 0.00 36.97 2.66
588 589 7.883311 ACCAGCAGTAAAATATTGTAGTCAAGT 59.117 33.333 0.00 0.00 36.97 3.16
589 590 8.268850 ACCAGCAGTAAAATATTGTAGTCAAG 57.731 34.615 0.00 0.00 36.97 3.02
590 591 9.727859 TTACCAGCAGTAAAATATTGTAGTCAA 57.272 29.630 0.00 0.00 38.01 3.18
591 592 9.378551 CTTACCAGCAGTAAAATATTGTAGTCA 57.621 33.333 0.00 0.00 40.43 3.41
592 593 8.827677 CCTTACCAGCAGTAAAATATTGTAGTC 58.172 37.037 0.00 0.00 40.43 2.59
593 594 8.545472 TCCTTACCAGCAGTAAAATATTGTAGT 58.455 33.333 0.00 0.00 40.43 2.73
594 595 8.958119 TCCTTACCAGCAGTAAAATATTGTAG 57.042 34.615 0.00 0.00 40.43 2.74
595 596 9.914834 AATCCTTACCAGCAGTAAAATATTGTA 57.085 29.630 0.00 0.00 40.43 2.41
596 597 8.686334 CAATCCTTACCAGCAGTAAAATATTGT 58.314 33.333 13.39 0.00 40.43 2.71
597 598 7.649306 GCAATCCTTACCAGCAGTAAAATATTG 59.351 37.037 15.26 15.26 40.43 1.90
598 599 7.341769 TGCAATCCTTACCAGCAGTAAAATATT 59.658 33.333 0.00 0.00 40.43 1.28
599 600 6.833416 TGCAATCCTTACCAGCAGTAAAATAT 59.167 34.615 0.00 0.00 40.43 1.28
600 601 6.094881 GTGCAATCCTTACCAGCAGTAAAATA 59.905 38.462 0.00 0.00 40.43 1.40
601 602 5.016173 TGCAATCCTTACCAGCAGTAAAAT 58.984 37.500 0.00 0.00 40.43 1.82
602 603 4.217550 GTGCAATCCTTACCAGCAGTAAAA 59.782 41.667 0.00 0.00 40.43 1.52
603 604 3.756434 GTGCAATCCTTACCAGCAGTAAA 59.244 43.478 0.00 0.00 40.43 2.01
604 605 3.343617 GTGCAATCCTTACCAGCAGTAA 58.656 45.455 0.00 0.17 38.65 2.24
605 606 2.355716 GGTGCAATCCTTACCAGCAGTA 60.356 50.000 0.00 0.00 35.66 2.74
606 607 1.614317 GGTGCAATCCTTACCAGCAGT 60.614 52.381 0.00 0.00 35.66 4.40
607 608 1.098050 GGTGCAATCCTTACCAGCAG 58.902 55.000 0.00 0.00 35.66 4.24
608 609 0.698238 AGGTGCAATCCTTACCAGCA 59.302 50.000 0.00 0.00 36.94 4.41
609 610 1.098050 CAGGTGCAATCCTTACCAGC 58.902 55.000 0.00 0.00 36.94 4.85
610 611 1.281867 TCCAGGTGCAATCCTTACCAG 59.718 52.381 0.00 0.00 36.94 4.00
611 612 1.281867 CTCCAGGTGCAATCCTTACCA 59.718 52.381 0.00 0.00 36.94 3.25
612 613 1.559682 TCTCCAGGTGCAATCCTTACC 59.440 52.381 0.00 0.00 35.37 2.85
613 614 3.209410 CATCTCCAGGTGCAATCCTTAC 58.791 50.000 0.00 0.00 35.37 2.34
614 615 2.421952 GCATCTCCAGGTGCAATCCTTA 60.422 50.000 6.96 0.00 40.94 2.69
615 616 1.684248 GCATCTCCAGGTGCAATCCTT 60.684 52.381 6.96 0.00 40.94 3.36
616 617 0.106819 GCATCTCCAGGTGCAATCCT 60.107 55.000 6.96 0.00 40.94 3.24
617 618 1.105759 GGCATCTCCAGGTGCAATCC 61.106 60.000 13.77 0.00 43.00 3.01
618 619 1.105759 GGGCATCTCCAGGTGCAATC 61.106 60.000 13.77 0.00 43.00 2.67
619 620 1.076485 GGGCATCTCCAGGTGCAAT 60.076 57.895 13.77 0.00 43.00 3.56
620 621 0.913934 TAGGGCATCTCCAGGTGCAA 60.914 55.000 13.77 0.00 43.00 4.08
621 622 0.913934 TTAGGGCATCTCCAGGTGCA 60.914 55.000 13.77 0.00 43.00 4.57
622 623 0.179034 CTTAGGGCATCTCCAGGTGC 60.179 60.000 2.96 2.96 40.55 5.01
623 624 0.471617 CCTTAGGGCATCTCCAGGTG 59.528 60.000 0.00 0.00 36.21 4.00
624 625 0.695803 CCCTTAGGGCATCTCCAGGT 60.696 60.000 3.52 0.00 35.35 4.00
625 626 2.149530 CCCTTAGGGCATCTCCAGG 58.850 63.158 3.52 0.00 35.35 4.45
636 637 1.177401 GCTTGGTCTTTGCCCTTAGG 58.823 55.000 0.00 0.00 0.00 2.69
637 638 1.815003 CTGCTTGGTCTTTGCCCTTAG 59.185 52.381 0.00 0.00 0.00 2.18
638 639 1.547675 CCTGCTTGGTCTTTGCCCTTA 60.548 52.381 0.00 0.00 0.00 2.69
639 640 0.829182 CCTGCTTGGTCTTTGCCCTT 60.829 55.000 0.00 0.00 0.00 3.95
640 641 1.228675 CCTGCTTGGTCTTTGCCCT 60.229 57.895 0.00 0.00 0.00 5.19
641 642 1.228552 TCCTGCTTGGTCTTTGCCC 60.229 57.895 0.00 0.00 37.07 5.36
642 643 1.871126 GCTCCTGCTTGGTCTTTGCC 61.871 60.000 0.00 0.00 37.07 4.52
643 644 1.174712 TGCTCCTGCTTGGTCTTTGC 61.175 55.000 0.00 0.00 40.48 3.68
644 645 1.321474 TTGCTCCTGCTTGGTCTTTG 58.679 50.000 0.00 0.00 40.48 2.77
645 646 1.959282 CTTTGCTCCTGCTTGGTCTTT 59.041 47.619 0.00 0.00 40.48 2.52
646 647 1.613836 CTTTGCTCCTGCTTGGTCTT 58.386 50.000 0.00 0.00 40.48 3.01
647 648 0.251077 CCTTTGCTCCTGCTTGGTCT 60.251 55.000 0.00 0.00 40.48 3.85
648 649 0.538287 ACCTTTGCTCCTGCTTGGTC 60.538 55.000 0.00 0.00 40.48 4.02
649 650 0.771127 TACCTTTGCTCCTGCTTGGT 59.229 50.000 0.00 0.00 40.48 3.67
650 651 1.168714 GTACCTTTGCTCCTGCTTGG 58.831 55.000 0.00 0.00 40.48 3.61
651 652 0.798776 CGTACCTTTGCTCCTGCTTG 59.201 55.000 0.00 0.00 40.48 4.01
652 653 0.396811 ACGTACCTTTGCTCCTGCTT 59.603 50.000 0.00 0.00 40.48 3.91
653 654 0.037232 GACGTACCTTTGCTCCTGCT 60.037 55.000 0.00 0.00 40.48 4.24
654 655 1.019805 GGACGTACCTTTGCTCCTGC 61.020 60.000 0.00 0.00 36.24 4.85
655 656 0.320374 TGGACGTACCTTTGCTCCTG 59.680 55.000 0.00 0.00 39.86 3.86
656 657 0.608640 CTGGACGTACCTTTGCTCCT 59.391 55.000 0.00 0.00 39.86 3.69
657 658 0.606604 TCTGGACGTACCTTTGCTCC 59.393 55.000 0.00 0.00 39.86 4.70
658 659 2.674796 ATCTGGACGTACCTTTGCTC 57.325 50.000 0.00 0.00 39.86 4.26
659 660 3.074412 CAAATCTGGACGTACCTTTGCT 58.926 45.455 0.00 0.00 39.86 3.91
660 661 3.071479 TCAAATCTGGACGTACCTTTGC 58.929 45.455 10.94 0.00 39.86 3.68
661 662 4.378459 GCTTCAAATCTGGACGTACCTTTG 60.378 45.833 9.95 9.95 39.86 2.77
662 663 3.751698 GCTTCAAATCTGGACGTACCTTT 59.248 43.478 0.00 0.00 39.86 3.11
663 664 3.335579 GCTTCAAATCTGGACGTACCTT 58.664 45.455 0.00 0.00 39.86 3.50
664 665 2.354805 GGCTTCAAATCTGGACGTACCT 60.355 50.000 0.00 0.00 39.86 3.08
665 666 2.007608 GGCTTCAAATCTGGACGTACC 58.992 52.381 0.00 0.00 39.54 3.34
666 667 2.973945 AGGCTTCAAATCTGGACGTAC 58.026 47.619 0.00 0.00 0.00 3.67
667 668 3.007506 TCAAGGCTTCAAATCTGGACGTA 59.992 43.478 0.00 0.00 0.00 3.57
668 669 2.154462 CAAGGCTTCAAATCTGGACGT 58.846 47.619 0.00 0.00 0.00 4.34
669 670 2.426522 TCAAGGCTTCAAATCTGGACG 58.573 47.619 0.00 0.00 0.00 4.79
670 671 3.192212 CCTTCAAGGCTTCAAATCTGGAC 59.808 47.826 0.00 0.00 0.00 4.02
671 672 3.181429 ACCTTCAAGGCTTCAAATCTGGA 60.181 43.478 2.20 0.00 39.63 3.86
672 673 3.160269 ACCTTCAAGGCTTCAAATCTGG 58.840 45.455 2.20 0.00 39.63 3.86
673 674 4.861102 AACCTTCAAGGCTTCAAATCTG 57.139 40.909 2.20 0.00 39.63 2.90
674 675 4.455877 CGTAACCTTCAAGGCTTCAAATCT 59.544 41.667 2.20 0.00 39.63 2.40
675 676 4.215613 ACGTAACCTTCAAGGCTTCAAATC 59.784 41.667 2.20 0.00 39.63 2.17
676 677 4.142038 ACGTAACCTTCAAGGCTTCAAAT 58.858 39.130 2.20 0.00 39.63 2.32
677 678 3.547746 ACGTAACCTTCAAGGCTTCAAA 58.452 40.909 2.20 0.00 39.63 2.69
678 679 3.135994 GACGTAACCTTCAAGGCTTCAA 58.864 45.455 2.20 0.00 39.63 2.69
679 680 2.549349 GGACGTAACCTTCAAGGCTTCA 60.549 50.000 2.20 0.00 39.63 3.02
680 681 2.074576 GGACGTAACCTTCAAGGCTTC 58.925 52.381 2.20 0.00 39.63 3.86
681 682 1.418637 TGGACGTAACCTTCAAGGCTT 59.581 47.619 2.20 0.00 39.63 4.35
682 683 1.053424 TGGACGTAACCTTCAAGGCT 58.947 50.000 2.20 0.00 39.63 4.58
683 684 1.154197 GTGGACGTAACCTTCAAGGC 58.846 55.000 2.20 0.00 39.63 4.35
684 685 2.036733 TCAGTGGACGTAACCTTCAAGG 59.963 50.000 0.22 0.22 42.49 3.61
685 686 3.380479 TCAGTGGACGTAACCTTCAAG 57.620 47.619 0.00 0.00 0.00 3.02
686 687 3.823281 TTCAGTGGACGTAACCTTCAA 57.177 42.857 0.00 0.00 0.00 2.69
687 688 3.576982 AGATTCAGTGGACGTAACCTTCA 59.423 43.478 0.00 0.00 0.00 3.02
688 689 4.082136 AGAGATTCAGTGGACGTAACCTTC 60.082 45.833 0.00 0.00 0.00 3.46
689 690 3.833070 AGAGATTCAGTGGACGTAACCTT 59.167 43.478 0.00 0.00 0.00 3.50
690 691 3.432378 AGAGATTCAGTGGACGTAACCT 58.568 45.455 0.00 0.00 0.00 3.50
691 692 3.870633 AGAGATTCAGTGGACGTAACC 57.129 47.619 0.00 0.00 0.00 2.85
692 693 5.061920 AGAAGAGATTCAGTGGACGTAAC 57.938 43.478 0.00 0.00 0.00 2.50
693 694 4.158025 GGAGAAGAGATTCAGTGGACGTAA 59.842 45.833 0.00 0.00 0.00 3.18
694 695 3.695060 GGAGAAGAGATTCAGTGGACGTA 59.305 47.826 0.00 0.00 0.00 3.57
695 696 2.494073 GGAGAAGAGATTCAGTGGACGT 59.506 50.000 0.00 0.00 0.00 4.34
696 697 2.493675 TGGAGAAGAGATTCAGTGGACG 59.506 50.000 0.00 0.00 0.00 4.79
697 698 4.161189 TGATGGAGAAGAGATTCAGTGGAC 59.839 45.833 0.00 0.00 0.00 4.02
698 699 4.161189 GTGATGGAGAAGAGATTCAGTGGA 59.839 45.833 0.00 0.00 0.00 4.02
699 700 4.081254 TGTGATGGAGAAGAGATTCAGTGG 60.081 45.833 0.00 0.00 0.00 4.00
700 701 4.869297 GTGTGATGGAGAAGAGATTCAGTG 59.131 45.833 0.00 0.00 0.00 3.66
701 702 4.381398 CGTGTGATGGAGAAGAGATTCAGT 60.381 45.833 0.00 0.00 0.00 3.41
702 703 4.111198 CGTGTGATGGAGAAGAGATTCAG 58.889 47.826 0.00 0.00 0.00 3.02
703 704 3.763897 TCGTGTGATGGAGAAGAGATTCA 59.236 43.478 0.00 0.00 0.00 2.57
704 705 4.109050 GTCGTGTGATGGAGAAGAGATTC 58.891 47.826 0.00 0.00 0.00 2.52
705 706 3.766591 AGTCGTGTGATGGAGAAGAGATT 59.233 43.478 0.00 0.00 0.00 2.40
706 707 3.360867 AGTCGTGTGATGGAGAAGAGAT 58.639 45.455 0.00 0.00 0.00 2.75
707 708 2.796557 AGTCGTGTGATGGAGAAGAGA 58.203 47.619 0.00 0.00 0.00 3.10
708 709 4.082733 TGTTAGTCGTGTGATGGAGAAGAG 60.083 45.833 0.00 0.00 0.00 2.85
709 710 3.824443 TGTTAGTCGTGTGATGGAGAAGA 59.176 43.478 0.00 0.00 0.00 2.87
710 711 3.921021 GTGTTAGTCGTGTGATGGAGAAG 59.079 47.826 0.00 0.00 0.00 2.85
711 712 3.572682 AGTGTTAGTCGTGTGATGGAGAA 59.427 43.478 0.00 0.00 0.00 2.87
712 713 3.154710 AGTGTTAGTCGTGTGATGGAGA 58.845 45.455 0.00 0.00 0.00 3.71
713 714 3.057526 TGAGTGTTAGTCGTGTGATGGAG 60.058 47.826 0.00 0.00 0.00 3.86
714 715 2.888414 TGAGTGTTAGTCGTGTGATGGA 59.112 45.455 0.00 0.00 0.00 3.41
715 716 2.987149 GTGAGTGTTAGTCGTGTGATGG 59.013 50.000 0.00 0.00 0.00 3.51
716 717 3.902150 AGTGAGTGTTAGTCGTGTGATG 58.098 45.455 0.00 0.00 0.00 3.07
717 718 3.365064 CGAGTGAGTGTTAGTCGTGTGAT 60.365 47.826 0.00 0.00 36.51 3.06
718 719 2.032290 CGAGTGAGTGTTAGTCGTGTGA 60.032 50.000 0.00 0.00 36.51 3.58
719 720 2.307929 CGAGTGAGTGTTAGTCGTGTG 58.692 52.381 0.00 0.00 36.51 3.82
720 721 1.334779 GCGAGTGAGTGTTAGTCGTGT 60.335 52.381 0.00 0.00 41.68 4.49
721 722 1.328439 GCGAGTGAGTGTTAGTCGTG 58.672 55.000 0.00 0.00 41.68 4.35
722 723 0.240411 GGCGAGTGAGTGTTAGTCGT 59.760 55.000 0.00 0.00 41.68 4.34
723 724 0.240145 TGGCGAGTGAGTGTTAGTCG 59.760 55.000 0.00 0.00 42.33 4.18
724 725 1.269998 AGTGGCGAGTGAGTGTTAGTC 59.730 52.381 0.00 0.00 0.00 2.59
725 726 1.329256 AGTGGCGAGTGAGTGTTAGT 58.671 50.000 0.00 0.00 0.00 2.24
726 727 3.570926 TTAGTGGCGAGTGAGTGTTAG 57.429 47.619 0.00 0.00 0.00 2.34
727 728 4.325028 TTTTAGTGGCGAGTGAGTGTTA 57.675 40.909 0.00 0.00 0.00 2.41
772 773 1.094785 CGTCGGGATCCTTTGCATTT 58.905 50.000 12.58 0.00 0.00 2.32
773 774 0.251916 TCGTCGGGATCCTTTGCATT 59.748 50.000 12.58 0.00 0.00 3.56
795 796 3.868077 AGTGATGATAGAAAGAACAGCGC 59.132 43.478 0.00 0.00 0.00 5.92
829 830 1.002430 AGTGCAAAGATGAGCTCCGAA 59.998 47.619 12.15 0.00 0.00 4.30
920 923 1.806496 AGATGGATGGGGATCGTGAA 58.194 50.000 0.00 0.00 0.00 3.18
949 952 3.306472 TTGCTGGTTAACCTCTGGTTT 57.694 42.857 24.78 0.00 44.33 3.27
961 964 0.322456 TAGCTTCGCCATTGCTGGTT 60.322 50.000 0.00 0.00 45.10 3.67
987 990 0.726827 GCGCCATGAAATTCGTCAGA 59.273 50.000 0.00 0.00 0.00 3.27
1050 1053 3.011760 GAACGAGCCAAGAACCGCG 62.012 63.158 0.00 0.00 0.00 6.46
1051 1054 1.668151 AGAACGAGCCAAGAACCGC 60.668 57.895 0.00 0.00 0.00 5.68
1065 1068 1.446966 GGCGAGTCTGAGGCAGAAC 60.447 63.158 0.00 0.00 42.46 3.01
1089 1092 1.537397 TTCCTCTCCCTGCTGCTGT 60.537 57.895 0.00 0.00 0.00 4.40
1281 1296 2.996153 TTGCCGTACGGGTAGCCA 60.996 61.111 33.98 20.55 38.44 4.75
1722 1737 3.231736 AGGAACACGGTGAGGCGT 61.232 61.111 16.29 2.40 0.00 5.68
1826 1848 2.579207 TCAATTCAGACCGATCGACC 57.421 50.000 18.66 7.67 0.00 4.79
1841 1863 2.161410 ACACGCACGCATACATTTCAAT 59.839 40.909 0.00 0.00 0.00 2.57
1842 1864 1.533299 ACACGCACGCATACATTTCAA 59.467 42.857 0.00 0.00 0.00 2.69
1844 1866 1.523501 CACACGCACGCATACATTTC 58.476 50.000 0.00 0.00 0.00 2.17
1845 1867 0.454285 GCACACGCACGCATACATTT 60.454 50.000 0.00 0.00 38.36 2.32
1966 1988 1.513158 CGACAGGATCACCTCGCTT 59.487 57.895 0.00 0.00 45.94 4.68
2286 2311 1.072505 TTTGGAGAAGGTGTCGGCC 59.927 57.895 0.00 0.00 0.00 6.13
2367 2400 5.050499 GTGGTGATCAATGAATCGATGAGTC 60.050 44.000 0.00 0.00 0.00 3.36
2370 2403 4.129380 GGTGGTGATCAATGAATCGATGA 58.871 43.478 0.00 0.00 0.00 2.92
2371 2404 3.878699 TGGTGGTGATCAATGAATCGATG 59.121 43.478 0.00 0.00 0.00 3.84
2372 2405 4.132336 CTGGTGGTGATCAATGAATCGAT 58.868 43.478 0.00 0.00 0.00 3.59
2374 2407 3.310774 GTCTGGTGGTGATCAATGAATCG 59.689 47.826 0.00 0.00 0.00 3.34
2375 2408 3.310774 CGTCTGGTGGTGATCAATGAATC 59.689 47.826 0.00 0.00 0.00 2.52
2376 2409 3.273434 CGTCTGGTGGTGATCAATGAAT 58.727 45.455 0.00 0.00 0.00 2.57
2378 2411 1.066215 CCGTCTGGTGGTGATCAATGA 60.066 52.381 0.00 0.00 0.00 2.57
2379 2412 1.372582 CCGTCTGGTGGTGATCAATG 58.627 55.000 0.00 0.00 0.00 2.82
2381 2414 1.676968 CCCGTCTGGTGGTGATCAA 59.323 57.895 0.00 0.00 0.00 2.57
2670 2703 1.153429 GTAGGTGAAGCGGGCGAAT 60.153 57.895 0.00 0.00 0.00 3.34
2979 3015 6.223852 AGAGTTGAAGCAGAAAGAATTCGTA 58.776 36.000 0.00 0.00 40.63 3.43
2980 3016 5.059833 AGAGTTGAAGCAGAAAGAATTCGT 58.940 37.500 0.00 0.00 40.63 3.85
2981 3017 5.604010 AGAGTTGAAGCAGAAAGAATTCG 57.396 39.130 0.00 0.00 40.63 3.34
2982 3018 7.200778 AGAAGAGTTGAAGCAGAAAGAATTC 57.799 36.000 0.00 0.00 35.70 2.17
2983 3019 7.501892 AGAAGAAGAGTTGAAGCAGAAAGAATT 59.498 33.333 0.00 0.00 0.00 2.17
2984 3020 6.997476 AGAAGAAGAGTTGAAGCAGAAAGAAT 59.003 34.615 0.00 0.00 0.00 2.40
3001 3039 2.230025 CGAGTGCAGGAGAAGAAGAAGA 59.770 50.000 0.00 0.00 0.00 2.87
3002 3040 2.230025 TCGAGTGCAGGAGAAGAAGAAG 59.770 50.000 0.00 0.00 0.00 2.85
3003 3041 2.239400 TCGAGTGCAGGAGAAGAAGAA 58.761 47.619 0.00 0.00 0.00 2.52
3019 3057 1.346365 TTTCGTCGGAGCAAATCGAG 58.654 50.000 0.00 0.00 36.00 4.04
3080 3140 0.748450 ACCTGTTCGACCGAGTTTGA 59.252 50.000 0.00 0.00 0.00 2.69
3081 3141 2.056577 GTACCTGTTCGACCGAGTTTG 58.943 52.381 0.00 0.00 0.00 2.93
3082 3142 1.682854 TGTACCTGTTCGACCGAGTTT 59.317 47.619 0.00 0.00 0.00 2.66
3112 3172 1.063183 CCATCCCTCCTCCTGAATCC 58.937 60.000 0.00 0.00 0.00 3.01
3173 3237 2.159393 ACCGCCGTGAATGAAATGAATG 60.159 45.455 0.00 0.00 0.00 2.67
3194 3258 3.249189 GAGGCTGGGTGGGTGACA 61.249 66.667 0.00 0.00 0.00 3.58
3208 3278 2.012051 GCATGAAGGTACGGTTGGAGG 61.012 57.143 0.00 0.00 0.00 4.30
3221 3291 0.449388 GGCACGAAGGAAGCATGAAG 59.551 55.000 0.00 0.00 0.00 3.02
3262 3332 5.787380 AGAAAGAAACAAGAAATCCCATGC 58.213 37.500 0.00 0.00 0.00 4.06
3288 3358 4.974275 CAGCTGTTCACAAAACAATCTCTG 59.026 41.667 5.25 0.00 0.00 3.35
3304 3374 2.729028 ACCACTAACAACCAGCTGTT 57.271 45.000 13.81 3.47 42.20 3.16
3307 3377 3.849563 TGTAACCACTAACAACCAGCT 57.150 42.857 0.00 0.00 0.00 4.24
3308 3378 4.998672 TGTATGTAACCACTAACAACCAGC 59.001 41.667 0.00 0.00 0.00 4.85
3309 3379 5.992829 TGTGTATGTAACCACTAACAACCAG 59.007 40.000 0.00 0.00 32.76 4.00
3310 3380 5.926663 TGTGTATGTAACCACTAACAACCA 58.073 37.500 0.00 0.00 32.76 3.67
3311 3381 7.443259 AATGTGTATGTAACCACTAACAACC 57.557 36.000 0.00 0.00 32.76 3.77
3312 3382 8.347035 ACAAATGTGTATGTAACCACTAACAAC 58.653 33.333 0.00 0.00 35.72 3.32
3313 3383 8.453238 ACAAATGTGTATGTAACCACTAACAA 57.547 30.769 0.00 0.00 35.72 2.83
3314 3384 8.346300 CAACAAATGTGTATGTAACCACTAACA 58.654 33.333 0.00 0.00 36.80 2.41
3315 3385 8.347035 ACAACAAATGTGTATGTAACCACTAAC 58.653 33.333 0.00 0.00 41.93 2.34
3316 3386 8.453238 ACAACAAATGTGTATGTAACCACTAA 57.547 30.769 0.00 0.00 41.93 2.24
3317 3387 8.346300 CAACAACAAATGTGTATGTAACCACTA 58.654 33.333 0.00 0.00 42.99 2.74
3318 3388 6.952773 ACAACAAATGTGTATGTAACCACT 57.047 33.333 0.00 0.00 41.93 4.00
3319 3389 6.975772 ACAACAACAAATGTGTATGTAACCAC 59.024 34.615 0.00 0.00 42.99 4.16
3359 3429 7.962918 GTGATTTTATCTCACAAGCGTTACAAT 59.037 33.333 0.00 0.00 42.08 2.71
3361 3431 6.827641 GTGATTTTATCTCACAAGCGTTACA 58.172 36.000 0.00 0.00 42.08 2.41
3402 3472 3.837213 ATGATCTCCGCAAAGTGTTTG 57.163 42.857 0.00 0.00 43.44 2.93
3414 3484 6.373774 AGTGTTTCATCTCACAAATGATCTCC 59.626 38.462 0.00 0.00 37.07 3.71
3416 3486 7.756395 AAGTGTTTCATCTCACAAATGATCT 57.244 32.000 0.00 0.00 37.07 2.75
3444 3519 7.646526 GTGGCCGTATAAATAAAAAGGATGAAC 59.353 37.037 0.00 0.00 0.00 3.18
3500 4247 4.189188 AACGTCCGCGAGATCCGG 62.189 66.667 8.23 0.00 46.88 5.14
3549 4296 1.132500 AAATCTCCGGGCTTCCTAGG 58.868 55.000 0.82 0.82 0.00 3.02
3550 4297 1.811941 GCAAATCTCCGGGCTTCCTAG 60.812 57.143 0.00 0.00 0.00 3.02
3551 4298 0.180406 GCAAATCTCCGGGCTTCCTA 59.820 55.000 0.00 0.00 0.00 2.94
3590 4385 1.006102 AACCTCCAGCTCGTTGACG 60.006 57.895 0.00 0.00 41.45 4.35
3594 4389 0.037232 GCTACAACCTCCAGCTCGTT 60.037 55.000 0.00 0.00 32.46 3.85
3596 4391 1.517257 CGCTACAACCTCCAGCTCG 60.517 63.158 0.00 0.00 33.03 5.03
3599 4394 2.820037 GGCGCTACAACCTCCAGC 60.820 66.667 7.64 0.00 0.00 4.85
3602 4397 4.452733 AGCGGCGCTACAACCTCC 62.453 66.667 35.68 0.00 36.99 4.30
3609 4404 2.905880 TAGGAGGAGCGGCGCTAC 60.906 66.667 35.90 35.90 39.88 3.58
3614 4409 3.851128 GGGTGTAGGAGGAGCGGC 61.851 72.222 0.00 0.00 0.00 6.53
3616 4411 4.208686 GCGGGTGTAGGAGGAGCG 62.209 72.222 0.00 0.00 0.00 5.03
3617 4412 3.851128 GGCGGGTGTAGGAGGAGC 61.851 72.222 0.00 0.00 0.00 4.70
3618 4413 3.528370 CGGCGGGTGTAGGAGGAG 61.528 72.222 0.00 0.00 0.00 3.69
3620 4415 2.652095 TTTCGGCGGGTGTAGGAGG 61.652 63.158 7.21 0.00 0.00 4.30
3628 4423 4.974989 GTCGGTGTTTCGGCGGGT 62.975 66.667 7.21 0.00 0.00 5.28
3634 4429 1.009389 GGAGAGCAGTCGGTGTTTCG 61.009 60.000 0.00 0.00 0.00 3.46
3636 4431 1.371558 GGGAGAGCAGTCGGTGTTT 59.628 57.895 0.00 0.00 0.00 2.83
3640 4435 2.997897 GGTGGGAGAGCAGTCGGT 60.998 66.667 0.00 0.00 0.00 4.69
3643 4438 0.107945 GTCATGGTGGGAGAGCAGTC 60.108 60.000 0.00 0.00 34.93 3.51
3646 4441 2.659063 CCGTCATGGTGGGAGAGCA 61.659 63.158 0.00 0.00 36.23 4.26
3647 4442 2.187946 CCGTCATGGTGGGAGAGC 59.812 66.667 0.00 0.00 0.00 4.09
3648 4443 2.187946 GCCGTCATGGTGGGAGAG 59.812 66.667 6.32 0.00 41.21 3.20
3649 4444 3.770040 CGCCGTCATGGTGGGAGA 61.770 66.667 6.32 0.00 44.97 3.71
3655 4450 2.047274 CTCCAACGCCGTCATGGT 60.047 61.111 7.76 0.00 41.21 3.55
3656 4451 2.047274 ACTCCAACGCCGTCATGG 60.047 61.111 1.46 1.46 42.50 3.66
3657 4452 3.027170 GCACTCCAACGCCGTCATG 62.027 63.158 0.00 0.00 0.00 3.07
3658 4453 2.742372 GCACTCCAACGCCGTCAT 60.742 61.111 0.00 0.00 0.00 3.06
3663 4458 2.357760 TAACCGCACTCCAACGCC 60.358 61.111 0.00 0.00 0.00 5.68
3664 4459 2.858158 GTAACCGCACTCCAACGC 59.142 61.111 0.00 0.00 0.00 4.84
3665 4460 3.152703 CGTAACCGCACTCCAACG 58.847 61.111 0.00 0.00 0.00 4.10
3685 4480 3.612247 ATGAGTCAGCGCACCCACC 62.612 63.158 11.47 0.00 0.00 4.61
3686 4481 2.046892 ATGAGTCAGCGCACCCAC 60.047 61.111 11.47 0.00 0.00 4.61
3687 4482 2.265739 GATGAGTCAGCGCACCCA 59.734 61.111 11.47 0.00 0.00 4.51
3688 4483 2.887568 CGATGAGTCAGCGCACCC 60.888 66.667 18.79 0.00 36.27 4.61
3702 4497 4.241555 GAGGTGGCATCCGGCGAT 62.242 66.667 9.30 0.00 46.16 4.58
3705 4500 0.886490 CAATAGAGGTGGCATCCGGC 60.886 60.000 0.00 0.00 43.74 6.13
3706 4501 0.469917 ACAATAGAGGTGGCATCCGG 59.530 55.000 0.00 0.00 0.00 5.14
3711 4506 1.555075 GACCAGACAATAGAGGTGGCA 59.445 52.381 0.00 0.00 33.77 4.92
3712 4507 1.134371 GGACCAGACAATAGAGGTGGC 60.134 57.143 0.00 0.00 33.77 5.01
3713 4508 2.432510 GAGGACCAGACAATAGAGGTGG 59.567 54.545 0.00 0.00 33.77 4.61
3715 4510 2.379972 CGAGGACCAGACAATAGAGGT 58.620 52.381 0.00 0.00 37.00 3.85
3749 4544 2.851071 GCCGACTAGCTCGCCAGAT 61.851 63.158 0.00 0.00 41.46 2.90
3752 4547 3.356639 CTTGCCGACTAGCTCGCCA 62.357 63.158 0.00 2.69 41.46 5.69
3763 4558 1.746615 GCTGAGATTGGCTTGCCGA 60.747 57.895 3.80 3.80 0.00 5.54
3768 4563 0.627451 TGATGGGCTGAGATTGGCTT 59.373 50.000 0.00 0.00 0.00 4.35
3775 4570 2.265739 GTGCGTGATGGGCTGAGA 59.734 61.111 0.00 0.00 0.00 3.27
3781 4576 2.815211 CCTGTCGTGCGTGATGGG 60.815 66.667 0.00 0.00 0.00 4.00
3782 4577 3.490759 GCCTGTCGTGCGTGATGG 61.491 66.667 0.00 0.00 0.00 3.51
3783 4578 2.029288 AAGCCTGTCGTGCGTGATG 61.029 57.895 0.00 0.00 0.00 3.07
3784 4579 2.029288 CAAGCCTGTCGTGCGTGAT 61.029 57.895 0.00 0.00 40.05 3.06
3785 4580 2.661537 CAAGCCTGTCGTGCGTGA 60.662 61.111 0.00 0.00 40.05 4.35
3787 4582 2.661866 GACAAGCCTGTCGTGCGT 60.662 61.111 0.00 0.00 42.54 5.24
3823 4618 2.234908 ACGAAGCAGAAGCAGGAGTTAT 59.765 45.455 0.00 0.00 45.49 1.89
3824 4619 1.618837 ACGAAGCAGAAGCAGGAGTTA 59.381 47.619 0.00 0.00 45.49 2.24
3841 4636 0.458669 GTGGGAAAGCCTATCGACGA 59.541 55.000 0.00 0.00 0.00 4.20
3886 4681 2.108976 ACCACTGCACCACGTCAG 59.891 61.111 0.74 0.74 36.45 3.51
3897 4692 0.604780 CCTCTTCAGGCACACCACTG 60.605 60.000 0.00 0.00 39.06 3.66
3898 4693 0.764369 TCCTCTTCAGGCACACCACT 60.764 55.000 0.00 0.00 40.12 4.00
3903 4698 1.070758 GTTGTCTCCTCTTCAGGCACA 59.929 52.381 0.00 0.00 40.12 4.57
3907 4702 7.693969 ATTTAAATGTTGTCTCCTCTTCAGG 57.306 36.000 0.00 0.00 42.01 3.86
3909 4704 7.064609 CGCTATTTAAATGTTGTCTCCTCTTCA 59.935 37.037 11.05 0.00 0.00 3.02
3913 4708 5.815740 TCCGCTATTTAAATGTTGTCTCCTC 59.184 40.000 11.05 0.00 0.00 3.71
3924 4719 1.944709 GCCGGTGTCCGCTATTTAAAT 59.055 47.619 1.90 5.89 46.86 1.40
3937 4732 3.626924 GAGTGTCCTGGCCGGTGT 61.627 66.667 11.58 0.00 0.00 4.16
3953 4748 3.595173 CCACATTAACTCACCACATCGA 58.405 45.455 0.00 0.00 0.00 3.59
3956 4751 2.446435 GCCCACATTAACTCACCACAT 58.554 47.619 0.00 0.00 0.00 3.21
3981 4776 2.251642 GCGGCTGTGAAACCTTCGT 61.252 57.895 0.00 0.00 34.36 3.85
3982 4777 2.556287 GCGGCTGTGAAACCTTCG 59.444 61.111 0.00 0.00 34.36 3.79
3994 4789 2.918230 ATTAAACTAGCGCGGCGGCT 62.918 55.000 25.03 22.65 46.88 5.52
3999 4794 0.043310 GCGACATTAAACTAGCGCGG 60.043 55.000 8.83 1.05 35.02 6.46
4020 4815 1.375326 GGTTCCTATCCATCGGCCC 59.625 63.158 0.00 0.00 0.00 5.80
4036 4831 1.153429 GCTCCGCATTCTAACCGGT 60.153 57.895 0.00 0.00 42.48 5.28
4038 4833 1.062587 CTTTGCTCCGCATTCTAACCG 59.937 52.381 0.00 0.00 38.76 4.44
4067 4862 3.569049 GACACGTGACCGGACAGGG 62.569 68.421 25.01 18.09 46.96 4.45
4073 4868 3.359523 TCGGAGACACGTGACCGG 61.360 66.667 32.97 21.28 44.57 5.28
4096 4891 0.836400 TCCTGGTCTCCACCCTGTTC 60.836 60.000 0.00 0.00 42.99 3.18
4132 4927 4.520846 CCGACATTGAAGCGGCGC 62.521 66.667 26.86 26.86 38.46 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.