Multiple sequence alignment - TraesCS5A01G521800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G521800 chr5A 100.000 4168 0 0 1 4168 682936183 682932016 0.000000e+00 7697.0
1 TraesCS5A01G521800 chr5A 85.567 97 9 3 3965 4060 569558535 569558627 3.430000e-16 97.1
2 TraesCS5A01G521800 chr4D 93.456 1849 63 16 1683 3501 501317526 501319346 0.000000e+00 2691.0
3 TraesCS5A01G521800 chr4D 80.174 918 67 48 392 1264 501315961 501316808 7.770000e-162 580.0
4 TraesCS5A01G521800 chr4D 87.129 303 16 8 3504 3783 501319378 501319680 5.200000e-84 322.0
5 TraesCS5A01G521800 chr4D 96.522 115 4 0 4054 4168 501320144 501320258 1.530000e-44 191.0
6 TraesCS5A01G521800 chr4D 98.969 97 1 0 3870 3966 501320050 501320146 1.540000e-39 174.0
7 TraesCS5A01G521800 chr4D 89.247 93 7 2 3962 4051 71381011 71380919 3.410000e-21 113.0
8 TraesCS5A01G521800 chr4B 92.538 1769 82 26 1720 3457 645297696 645299445 0.000000e+00 2490.0
9 TraesCS5A01G521800 chr4B 91.534 378 30 1 1 376 43769630 43769253 1.720000e-143 520.0
10 TraesCS5A01G521800 chr4B 78.029 842 80 49 359 1179 645296439 645297196 2.300000e-117 433.0
11 TraesCS5A01G521800 chr4B 92.653 245 16 2 3555 3798 645299533 645299776 6.630000e-93 351.0
12 TraesCS5A01G521800 chr4B 93.377 151 10 0 3816 3966 645299887 645300037 1.510000e-54 224.0
13 TraesCS5A01G521800 chr4B 97.345 113 3 0 4054 4166 645300035 645300147 4.250000e-45 193.0
14 TraesCS5A01G521800 chr4B 100.000 53 0 0 3504 3556 645299444 645299496 9.540000e-17 99.0
15 TraesCS5A01G521800 chr6A 89.583 672 52 13 1802 2460 437703212 437702546 0.000000e+00 837.0
16 TraesCS5A01G521800 chr6A 86.555 238 26 4 3563 3797 398098835 398098601 1.490000e-64 257.0
17 TraesCS5A01G521800 chr6A 86.076 237 28 3 3563 3797 302778945 302778712 2.490000e-62 250.0
18 TraesCS5A01G521800 chr7B 88.657 670 63 9 1800 2458 42361830 42361163 0.000000e+00 804.0
19 TraesCS5A01G521800 chr7B 97.183 71 1 1 3958 4028 714743603 714743672 7.320000e-23 119.0
20 TraesCS5A01G521800 chr2D 92.021 376 28 1 1 374 121769362 121769737 1.030000e-145 527.0
21 TraesCS5A01G521800 chr3D 91.270 378 31 1 2 377 188363863 188363486 7.990000e-142 514.0
22 TraesCS5A01G521800 chr3D 90.765 379 31 3 1 376 511254059 511253682 1.730000e-138 503.0
23 TraesCS5A01G521800 chr3D 88.421 95 4 5 3964 4051 570266823 570266729 1.580000e-19 108.0
24 TraesCS5A01G521800 chr6D 91.029 379 29 4 1 376 423800833 423801209 1.340000e-139 507.0
25 TraesCS5A01G521800 chr7D 90.957 376 32 1 1 374 400187871 400188246 4.810000e-139 505.0
26 TraesCS5A01G521800 chr7D 90.957 376 32 1 1 374 448517234 448517609 4.810000e-139 505.0
27 TraesCS5A01G521800 chr7D 90.957 376 32 1 1 374 513327401 513327776 4.810000e-139 505.0
28 TraesCS5A01G521800 chr7D 90.501 379 34 1 2 378 35187955 35188333 2.240000e-137 499.0
29 TraesCS5A01G521800 chr7D 90.426 94 2 2 3965 4058 610810903 610810989 2.630000e-22 117.0
30 TraesCS5A01G521800 chr6B 86.928 459 33 13 1684 2127 32111567 32112013 1.350000e-134 490.0
31 TraesCS5A01G521800 chr6B 85.830 247 28 6 3554 3797 9102793 9103035 5.350000e-64 255.0
32 TraesCS5A01G521800 chr6B 97.183 71 2 0 3958 4028 121797042 121796972 2.040000e-23 121.0
33 TraesCS5A01G521800 chr3A 86.555 238 25 5 3563 3797 733185449 733185682 5.350000e-64 255.0
34 TraesCS5A01G521800 chr3A 85.246 244 30 5 3555 3795 714773323 714773563 3.220000e-61 246.0
35 TraesCS5A01G521800 chr1A 85.772 246 27 7 3555 3795 117215162 117215404 1.920000e-63 254.0
36 TraesCS5A01G521800 chr1A 86.192 239 28 3 3563 3798 532737065 532736829 1.920000e-63 254.0
37 TraesCS5A01G521800 chr5B 86.192 239 25 6 3563 3797 534012157 534012391 6.920000e-63 252.0
38 TraesCS5A01G521800 chr5B 97.059 34 1 0 1341 1374 37737064 37737031 1.620000e-04 58.4
39 TraesCS5A01G521800 chr5B 100.000 29 0 0 4029 4057 17980601 17980573 2.000000e-03 54.7
40 TraesCS5A01G521800 chr5D 87.719 114 9 4 3962 4072 464686726 464686615 1.220000e-25 128.0
41 TraesCS5A01G521800 chr5D 87.755 49 6 0 1326 1374 428134596 428134644 1.620000e-04 58.4
42 TraesCS5A01G521800 chr2B 92.222 90 4 3 3965 4051 129659860 129659771 1.570000e-24 124.0
43 TraesCS5A01G521800 chr1B 98.529 68 1 0 3961 4028 623732115 623732048 2.040000e-23 121.0
44 TraesCS5A01G521800 chr4A 95.890 73 3 0 2386 2458 670379869 670379797 7.320000e-23 119.0
45 TraesCS5A01G521800 chr3B 90.741 54 5 0 1321 1374 818690553 818690500 5.780000e-09 73.1
46 TraesCS5A01G521800 chr3B 91.837 49 4 0 1326 1374 321022692 321022644 7.480000e-08 69.4
47 TraesCS5A01G521800 chr3B 88.889 54 6 0 1321 1374 818600737 818600684 2.690000e-07 67.6
48 TraesCS5A01G521800 chr3B 88.889 54 6 0 1321 1374 818645485 818645432 2.690000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G521800 chr5A 682932016 682936183 4167 True 7697.000000 7697 100.000000 1 4168 1 chr5A.!!$R1 4167
1 TraesCS5A01G521800 chr4D 501315961 501320258 4297 False 791.600000 2691 91.250000 392 4168 5 chr4D.!!$F1 3776
2 TraesCS5A01G521800 chr4B 645296439 645300147 3708 False 631.666667 2490 92.323667 359 4166 6 chr4B.!!$F1 3807
3 TraesCS5A01G521800 chr6A 437702546 437703212 666 True 837.000000 837 89.583000 1802 2460 1 chr6A.!!$R3 658
4 TraesCS5A01G521800 chr7B 42361163 42361830 667 True 804.000000 804 88.657000 1800 2458 1 chr7B.!!$R1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.030235 GTTGGGCCGTCACTTTTGTC 59.970 55.0 0.0 0.0 0.0 3.18 F
1152 1230 0.039035 ATTCCGCCCTTGCCTGTTTA 59.961 50.0 0.0 0.0 0.0 2.01 F
1562 1947 0.322975 GCTGCCCATATCATCGACCT 59.677 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1445 1531 0.032217 GGGCAAATCTTCCCATCCCA 60.032 55.0 0.0 0.0 42.18 4.37 R
2849 3341 0.771127 AAGGTTAGGACAGCCAAGCA 59.229 50.0 0.0 0.0 36.29 3.91 R
3495 4013 0.535335 GTATGCAGTCCAGGGAACGA 59.465 55.0 0.0 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.045926 CGAGGGAGCAAAGGTGGG 60.046 66.667 0.00 0.00 0.00 4.61
18 19 2.361737 GAGGGAGCAAAGGTGGGC 60.362 66.667 0.00 0.00 0.00 5.36
19 20 3.185203 AGGGAGCAAAGGTGGGCA 61.185 61.111 0.00 0.00 0.00 5.36
20 21 2.677875 GGGAGCAAAGGTGGGCAG 60.678 66.667 0.00 0.00 0.00 4.85
21 22 2.436109 GGAGCAAAGGTGGGCAGA 59.564 61.111 0.00 0.00 0.00 4.26
22 23 1.000396 GGAGCAAAGGTGGGCAGAT 60.000 57.895 0.00 0.00 0.00 2.90
23 24 1.318158 GGAGCAAAGGTGGGCAGATG 61.318 60.000 0.00 0.00 0.00 2.90
24 25 0.610232 GAGCAAAGGTGGGCAGATGT 60.610 55.000 0.00 0.00 0.00 3.06
25 26 0.896940 AGCAAAGGTGGGCAGATGTG 60.897 55.000 0.00 0.00 0.00 3.21
26 27 1.880819 GCAAAGGTGGGCAGATGTGG 61.881 60.000 0.00 0.00 0.00 4.17
27 28 0.251297 CAAAGGTGGGCAGATGTGGA 60.251 55.000 0.00 0.00 0.00 4.02
28 29 0.251341 AAAGGTGGGCAGATGTGGAC 60.251 55.000 0.00 0.00 0.00 4.02
29 30 2.436646 GGTGGGCAGATGTGGACG 60.437 66.667 0.00 0.00 0.00 4.79
30 31 2.436646 GTGGGCAGATGTGGACGG 60.437 66.667 0.00 0.00 0.00 4.79
31 32 4.408821 TGGGCAGATGTGGACGGC 62.409 66.667 0.00 0.00 0.00 5.68
33 34 4.451150 GGCAGATGTGGACGGCGA 62.451 66.667 16.62 0.00 0.00 5.54
34 35 2.887568 GCAGATGTGGACGGCGAG 60.888 66.667 16.62 0.00 0.00 5.03
35 36 2.573869 CAGATGTGGACGGCGAGT 59.426 61.111 16.62 0.00 0.00 4.18
36 37 1.807226 CAGATGTGGACGGCGAGTA 59.193 57.895 16.62 0.00 0.00 2.59
37 38 0.385751 CAGATGTGGACGGCGAGTAT 59.614 55.000 16.62 0.00 0.00 2.12
38 39 0.385751 AGATGTGGACGGCGAGTATG 59.614 55.000 16.62 0.00 0.00 2.39
39 40 0.597637 GATGTGGACGGCGAGTATGG 60.598 60.000 16.62 0.00 0.00 2.74
40 41 1.040893 ATGTGGACGGCGAGTATGGA 61.041 55.000 16.62 0.00 0.00 3.41
41 42 1.040893 TGTGGACGGCGAGTATGGAT 61.041 55.000 16.62 0.00 0.00 3.41
42 43 0.597637 GTGGACGGCGAGTATGGATG 60.598 60.000 16.62 0.00 0.00 3.51
43 44 0.753848 TGGACGGCGAGTATGGATGA 60.754 55.000 16.62 0.00 0.00 2.92
44 45 0.039074 GGACGGCGAGTATGGATGAG 60.039 60.000 16.62 0.00 0.00 2.90
45 46 0.039074 GACGGCGAGTATGGATGAGG 60.039 60.000 16.62 0.00 0.00 3.86
46 47 0.467474 ACGGCGAGTATGGATGAGGA 60.467 55.000 16.62 0.00 0.00 3.71
47 48 0.039074 CGGCGAGTATGGATGAGGAC 60.039 60.000 0.00 0.00 0.00 3.85
48 49 0.039074 GGCGAGTATGGATGAGGACG 60.039 60.000 0.00 0.00 0.00 4.79
49 50 0.039074 GCGAGTATGGATGAGGACGG 60.039 60.000 0.00 0.00 0.00 4.79
50 51 0.039074 CGAGTATGGATGAGGACGGC 60.039 60.000 0.00 0.00 0.00 5.68
51 52 0.318762 GAGTATGGATGAGGACGGCC 59.681 60.000 0.00 0.00 0.00 6.13
52 53 1.122019 AGTATGGATGAGGACGGCCC 61.122 60.000 1.76 0.00 33.31 5.80
53 54 1.841556 TATGGATGAGGACGGCCCC 60.842 63.158 1.76 0.00 34.66 5.80
71 72 2.740826 GCTGCACGGTCGGCTTAA 60.741 61.111 0.00 0.00 35.53 1.85
72 73 2.322081 GCTGCACGGTCGGCTTAAA 61.322 57.895 0.00 0.00 35.53 1.52
73 74 1.847890 GCTGCACGGTCGGCTTAAAA 61.848 55.000 0.00 0.00 35.53 1.52
74 75 0.589223 CTGCACGGTCGGCTTAAAAA 59.411 50.000 0.00 0.00 0.00 1.94
114 115 3.829044 CGTGGGCCCGTCGTCATA 61.829 66.667 24.88 0.44 0.00 2.15
115 116 2.580276 GTGGGCCCGTCGTCATAA 59.420 61.111 19.37 0.00 0.00 1.90
116 117 1.078988 GTGGGCCCGTCGTCATAAA 60.079 57.895 19.37 0.00 0.00 1.40
117 118 0.463116 GTGGGCCCGTCGTCATAAAT 60.463 55.000 19.37 0.00 0.00 1.40
118 119 0.253610 TGGGCCCGTCGTCATAAATT 59.746 50.000 19.37 0.00 0.00 1.82
119 120 1.485480 TGGGCCCGTCGTCATAAATTA 59.515 47.619 19.37 0.00 0.00 1.40
120 121 2.093075 TGGGCCCGTCGTCATAAATTAA 60.093 45.455 19.37 0.00 0.00 1.40
121 122 2.546789 GGGCCCGTCGTCATAAATTAAG 59.453 50.000 5.69 0.00 0.00 1.85
122 123 2.032290 GGCCCGTCGTCATAAATTAAGC 60.032 50.000 0.00 0.00 0.00 3.09
123 124 2.870411 GCCCGTCGTCATAAATTAAGCT 59.130 45.455 0.00 0.00 0.00 3.74
124 125 3.303132 GCCCGTCGTCATAAATTAAGCTG 60.303 47.826 0.00 0.00 0.00 4.24
125 126 4.116961 CCCGTCGTCATAAATTAAGCTGA 58.883 43.478 0.00 0.00 0.00 4.26
126 127 4.025979 CCCGTCGTCATAAATTAAGCTGAC 60.026 45.833 0.00 0.00 35.72 3.51
127 128 4.025979 CCGTCGTCATAAATTAAGCTGACC 60.026 45.833 0.00 0.00 35.66 4.02
128 129 4.317139 CGTCGTCATAAATTAAGCTGACCG 60.317 45.833 0.00 0.00 35.66 4.79
129 130 3.554324 TCGTCATAAATTAAGCTGACCGC 59.446 43.478 0.00 0.00 35.66 5.68
130 131 3.601586 CGTCATAAATTAAGCTGACCGCG 60.602 47.826 0.00 0.00 45.59 6.46
131 132 3.308866 GTCATAAATTAAGCTGACCGCGT 59.691 43.478 4.92 0.00 45.59 6.01
132 133 3.308595 TCATAAATTAAGCTGACCGCGTG 59.691 43.478 4.92 0.00 45.59 5.34
133 134 0.802494 AAATTAAGCTGACCGCGTGG 59.198 50.000 14.93 14.93 45.59 4.94
134 135 1.024579 AATTAAGCTGACCGCGTGGG 61.025 55.000 21.14 6.53 45.59 4.61
146 147 4.388499 CGTGGGCAGCGGGTAGTT 62.388 66.667 0.00 0.00 0.00 2.24
147 148 2.746277 GTGGGCAGCGGGTAGTTG 60.746 66.667 0.00 0.00 0.00 3.16
148 149 4.028490 TGGGCAGCGGGTAGTTGG 62.028 66.667 0.00 0.00 0.00 3.77
149 150 3.712907 GGGCAGCGGGTAGTTGGA 61.713 66.667 0.00 0.00 0.00 3.53
150 151 2.436115 GGCAGCGGGTAGTTGGAC 60.436 66.667 0.00 0.00 0.00 4.02
151 152 2.813908 GCAGCGGGTAGTTGGACG 60.814 66.667 0.00 0.00 0.00 4.79
152 153 2.125673 CAGCGGGTAGTTGGACGG 60.126 66.667 0.00 0.00 0.00 4.79
153 154 4.078516 AGCGGGTAGTTGGACGGC 62.079 66.667 0.00 0.00 0.00 5.68
155 156 4.807039 CGGGTAGTTGGACGGCCG 62.807 72.222 26.86 26.86 36.79 6.13
158 159 4.382320 GTAGTTGGACGGCCGCCA 62.382 66.667 29.62 29.62 36.79 5.69
159 160 3.395702 TAGTTGGACGGCCGCCAT 61.396 61.111 32.27 23.75 34.90 4.40
160 161 3.673956 TAGTTGGACGGCCGCCATG 62.674 63.158 32.27 7.55 34.90 3.66
209 210 2.813908 GAAGCGTCCGTTCGGCAT 60.814 61.111 6.35 0.00 0.00 4.40
210 211 2.799540 GAAGCGTCCGTTCGGCATC 61.800 63.158 6.35 0.00 0.00 3.91
211 212 4.814294 AGCGTCCGTTCGGCATCC 62.814 66.667 6.35 0.00 0.00 3.51
237 238 4.299756 GCATTTGGGGCGCAAATT 57.700 50.000 32.15 18.74 30.66 1.82
238 239 2.553962 GCATTTGGGGCGCAAATTT 58.446 47.368 32.15 16.65 30.66 1.82
239 240 0.168568 GCATTTGGGGCGCAAATTTG 59.831 50.000 32.15 25.80 30.66 2.32
240 241 0.803740 CATTTGGGGCGCAAATTTGG 59.196 50.000 32.15 20.80 30.66 3.28
241 242 0.689623 ATTTGGGGCGCAAATTTGGA 59.310 45.000 29.96 11.06 0.00 3.53
242 243 0.250081 TTTGGGGCGCAAATTTGGAC 60.250 50.000 23.74 11.46 0.00 4.02
243 244 2.105806 TTGGGGCGCAAATTTGGACC 62.106 55.000 19.47 18.87 0.00 4.46
244 245 2.126110 GGGCGCAAATTTGGACCG 60.126 61.111 19.47 14.83 0.00 4.79
245 246 2.809174 GGCGCAAATTTGGACCGC 60.809 61.111 24.48 24.48 43.51 5.68
246 247 2.049618 GCGCAAATTTGGACCGCA 60.050 55.556 26.33 0.00 43.67 5.69
247 248 1.663074 GCGCAAATTTGGACCGCAA 60.663 52.632 26.33 0.00 43.67 4.85
248 249 1.218230 GCGCAAATTTGGACCGCAAA 61.218 50.000 26.33 0.00 43.67 3.68
249 250 1.427435 CGCAAATTTGGACCGCAAAT 58.573 45.000 19.47 0.00 34.11 2.32
250 251 1.126479 CGCAAATTTGGACCGCAAATG 59.874 47.619 19.47 0.00 33.13 2.32
251 252 1.136000 GCAAATTTGGACCGCAAATGC 60.136 47.619 19.47 0.00 33.13 3.56
274 275 4.318021 CACGGACGACACGGACGT 62.318 66.667 0.00 0.00 46.58 4.34
286 287 2.766970 ACGGACGTGATTTGGTTTTG 57.233 45.000 0.00 0.00 0.00 2.44
287 288 1.335496 ACGGACGTGATTTGGTTTTGG 59.665 47.619 0.00 0.00 0.00 3.28
288 289 1.335506 CGGACGTGATTTGGTTTTGGG 60.336 52.381 0.00 0.00 0.00 4.12
289 290 1.684450 GGACGTGATTTGGTTTTGGGT 59.316 47.619 0.00 0.00 0.00 4.51
290 291 2.287970 GGACGTGATTTGGTTTTGGGTC 60.288 50.000 0.00 0.00 0.00 4.46
291 292 1.335496 ACGTGATTTGGTTTTGGGTCG 59.665 47.619 0.00 0.00 0.00 4.79
292 293 1.335506 CGTGATTTGGTTTTGGGTCGG 60.336 52.381 0.00 0.00 0.00 4.79
293 294 0.676736 TGATTTGGTTTTGGGTCGGC 59.323 50.000 0.00 0.00 0.00 5.54
294 295 0.388006 GATTTGGTTTTGGGTCGGCG 60.388 55.000 0.00 0.00 0.00 6.46
295 296 2.428960 ATTTGGTTTTGGGTCGGCGC 62.429 55.000 0.00 0.00 0.00 6.53
298 299 3.956317 GTTTTGGGTCGGCGCGTT 61.956 61.111 8.43 0.00 0.00 4.84
299 300 3.955101 TTTTGGGTCGGCGCGTTG 61.955 61.111 8.43 0.00 0.00 4.10
311 312 3.284449 GCGTTGGGCCGTCACTTT 61.284 61.111 0.00 0.00 34.80 2.66
312 313 2.841160 GCGTTGGGCCGTCACTTTT 61.841 57.895 0.00 0.00 34.80 2.27
313 314 1.008995 CGTTGGGCCGTCACTTTTG 60.009 57.895 0.00 0.00 0.00 2.44
314 315 1.720694 CGTTGGGCCGTCACTTTTGT 61.721 55.000 0.00 0.00 0.00 2.83
315 316 0.030235 GTTGGGCCGTCACTTTTGTC 59.970 55.000 0.00 0.00 0.00 3.18
316 317 1.104577 TTGGGCCGTCACTTTTGTCC 61.105 55.000 0.00 0.00 0.00 4.02
317 318 1.527380 GGGCCGTCACTTTTGTCCA 60.527 57.895 0.00 0.00 0.00 4.02
318 319 0.893727 GGGCCGTCACTTTTGTCCAT 60.894 55.000 0.00 0.00 0.00 3.41
319 320 1.612199 GGGCCGTCACTTTTGTCCATA 60.612 52.381 0.00 0.00 0.00 2.74
320 321 1.467342 GGCCGTCACTTTTGTCCATAC 59.533 52.381 0.00 0.00 0.00 2.39
321 322 1.467342 GCCGTCACTTTTGTCCATACC 59.533 52.381 0.00 0.00 0.00 2.73
322 323 1.730064 CCGTCACTTTTGTCCATACCG 59.270 52.381 0.00 0.00 0.00 4.02
323 324 2.610976 CCGTCACTTTTGTCCATACCGA 60.611 50.000 0.00 0.00 0.00 4.69
324 325 2.410730 CGTCACTTTTGTCCATACCGAC 59.589 50.000 0.00 0.00 0.00 4.79
325 326 3.660865 GTCACTTTTGTCCATACCGACT 58.339 45.455 0.00 0.00 33.70 4.18
326 327 3.678548 GTCACTTTTGTCCATACCGACTC 59.321 47.826 0.00 0.00 33.70 3.36
327 328 3.322541 TCACTTTTGTCCATACCGACTCA 59.677 43.478 0.00 0.00 33.70 3.41
328 329 4.062293 CACTTTTGTCCATACCGACTCAA 58.938 43.478 0.00 0.00 33.70 3.02
329 330 4.513692 CACTTTTGTCCATACCGACTCAAA 59.486 41.667 0.00 0.00 33.70 2.69
330 331 4.514066 ACTTTTGTCCATACCGACTCAAAC 59.486 41.667 0.00 0.00 33.70 2.93
331 332 2.357327 TGTCCATACCGACTCAAACG 57.643 50.000 0.00 0.00 33.70 3.60
348 349 2.582436 GGAGGTCCGCGGATGAAA 59.418 61.111 33.58 4.89 0.00 2.69
349 350 1.146263 GGAGGTCCGCGGATGAAAT 59.854 57.895 33.58 15.51 0.00 2.17
350 351 1.160329 GGAGGTCCGCGGATGAAATG 61.160 60.000 33.58 0.00 0.00 2.32
351 352 1.153168 AGGTCCGCGGATGAAATGG 60.153 57.895 33.58 0.00 0.00 3.16
352 353 1.153249 GGTCCGCGGATGAAATGGA 60.153 57.895 33.58 1.12 0.00 3.41
353 354 0.535102 GGTCCGCGGATGAAATGGAT 60.535 55.000 33.58 0.00 0.00 3.41
354 355 0.868406 GTCCGCGGATGAAATGGATC 59.132 55.000 33.58 10.49 0.00 3.36
355 356 0.599991 TCCGCGGATGAAATGGATCG 60.600 55.000 27.28 0.00 0.00 3.69
356 357 1.568612 CCGCGGATGAAATGGATCGG 61.569 60.000 24.07 0.00 0.00 4.18
357 358 0.880278 CGCGGATGAAATGGATCGGT 60.880 55.000 0.00 0.00 0.00 4.69
358 359 0.868406 GCGGATGAAATGGATCGGTC 59.132 55.000 0.00 0.00 0.00 4.79
359 360 1.512926 CGGATGAAATGGATCGGTCC 58.487 55.000 8.12 8.12 45.31 4.46
360 361 1.070758 CGGATGAAATGGATCGGTCCT 59.929 52.381 17.40 0.00 45.32 3.85
361 362 2.485479 CGGATGAAATGGATCGGTCCTT 60.485 50.000 17.40 6.81 45.32 3.36
362 363 3.555966 GGATGAAATGGATCGGTCCTTT 58.444 45.455 17.40 13.45 45.32 3.11
363 364 3.316308 GGATGAAATGGATCGGTCCTTTG 59.684 47.826 17.40 0.00 45.32 2.77
364 365 3.712016 TGAAATGGATCGGTCCTTTGA 57.288 42.857 17.40 5.55 45.32 2.69
381 382 2.743636 TGAAGTTGCTCTAAGGACGG 57.256 50.000 0.00 0.00 0.00 4.79
383 384 2.231478 TGAAGTTGCTCTAAGGACGGAG 59.769 50.000 0.00 0.00 0.00 4.63
390 391 2.042230 TAAGGACGGAGGGAGGGC 60.042 66.667 0.00 0.00 0.00 5.19
405 406 2.301346 GAGGGCCATGTGAAATACAGG 58.699 52.381 6.18 0.00 43.80 4.00
413 414 1.621317 TGTGAAATACAGGGAGACGCA 59.379 47.619 0.00 0.00 33.42 5.24
463 465 2.099431 GCGCTTGTCAGCTGGAGAG 61.099 63.158 15.13 12.17 44.85 3.20
567 573 0.109342 CCTGACACACCAAGAAGGCT 59.891 55.000 0.00 0.00 43.14 4.58
568 574 1.233019 CTGACACACCAAGAAGGCTG 58.767 55.000 0.00 0.00 43.14 4.85
569 575 0.179020 TGACACACCAAGAAGGCTGG 60.179 55.000 0.00 0.00 43.14 4.85
570 576 1.518903 GACACACCAAGAAGGCTGGC 61.519 60.000 0.00 0.00 43.14 4.85
611 633 1.601419 CCATCCACAAAGCCAGCCAG 61.601 60.000 0.00 0.00 0.00 4.85
612 634 1.980772 ATCCACAAAGCCAGCCAGC 60.981 57.895 0.00 0.00 0.00 4.85
613 635 3.688159 CCACAAAGCCAGCCAGCC 61.688 66.667 0.00 0.00 0.00 4.85
682 706 2.908688 AACAAAACCTGTTGCCATCC 57.091 45.000 0.00 0.00 46.80 3.51
683 707 1.786937 ACAAAACCTGTTGCCATCCA 58.213 45.000 0.00 0.00 32.99 3.41
687 711 0.680921 AACCTGTTGCCATCCATCGG 60.681 55.000 0.00 0.00 0.00 4.18
688 712 1.077501 CCTGTTGCCATCCATCGGT 60.078 57.895 0.00 0.00 0.00 4.69
693 717 2.203209 GCCATCCATCGGTGGTCC 60.203 66.667 15.92 0.00 46.16 4.46
755 779 3.645975 CCCACACACGCGGAACAC 61.646 66.667 12.47 0.00 0.00 3.32
761 785 1.007271 ACACGCGGAACACAGAGAG 60.007 57.895 12.47 0.00 0.00 3.20
763 787 1.004277 CACGCGGAACACAGAGAGAC 61.004 60.000 12.47 0.00 0.00 3.36
764 788 1.444553 CGCGGAACACAGAGAGACC 60.445 63.158 0.00 0.00 0.00 3.85
765 789 1.666011 GCGGAACACAGAGAGACCA 59.334 57.895 0.00 0.00 0.00 4.02
803 846 1.667724 CTCGCCAGTCAATCAACCATC 59.332 52.381 0.00 0.00 0.00 3.51
804 847 0.734889 CGCCAGTCAATCAACCATCC 59.265 55.000 0.00 0.00 0.00 3.51
805 848 1.838112 GCCAGTCAATCAACCATCCA 58.162 50.000 0.00 0.00 0.00 3.41
806 849 1.747355 GCCAGTCAATCAACCATCCAG 59.253 52.381 0.00 0.00 0.00 3.86
807 850 1.747355 CCAGTCAATCAACCATCCAGC 59.253 52.381 0.00 0.00 0.00 4.85
808 851 1.747355 CAGTCAATCAACCATCCAGCC 59.253 52.381 0.00 0.00 0.00 4.85
809 852 1.355381 AGTCAATCAACCATCCAGCCA 59.645 47.619 0.00 0.00 0.00 4.75
810 853 1.747355 GTCAATCAACCATCCAGCCAG 59.253 52.381 0.00 0.00 0.00 4.85
811 854 0.458669 CAATCAACCATCCAGCCAGC 59.541 55.000 0.00 0.00 0.00 4.85
812 855 0.685458 AATCAACCATCCAGCCAGCC 60.685 55.000 0.00 0.00 0.00 4.85
813 856 1.866483 ATCAACCATCCAGCCAGCCA 61.866 55.000 0.00 0.00 0.00 4.75
814 857 2.050350 CAACCATCCAGCCAGCCAG 61.050 63.158 0.00 0.00 0.00 4.85
842 894 0.336048 CCAACCAATCACCCCCATCT 59.664 55.000 0.00 0.00 0.00 2.90
848 900 2.227928 AATCACCCCCATCTCCCCCT 62.228 60.000 0.00 0.00 0.00 4.79
849 901 2.644628 ATCACCCCCATCTCCCCCTC 62.645 65.000 0.00 0.00 0.00 4.30
850 902 4.124126 ACCCCCATCTCCCCCTCC 62.124 72.222 0.00 0.00 0.00 4.30
851 903 4.928520 CCCCCATCTCCCCCTCCC 62.929 77.778 0.00 0.00 0.00 4.30
852 904 4.928520 CCCCATCTCCCCCTCCCC 62.929 77.778 0.00 0.00 0.00 4.81
853 905 4.928520 CCCATCTCCCCCTCCCCC 62.929 77.778 0.00 0.00 0.00 5.40
914 966 4.150454 CCCGCTCTCCCTCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
915 967 2.520741 CCGCTCTCCCTCTCCCTC 60.521 72.222 0.00 0.00 0.00 4.30
917 969 1.528309 CGCTCTCCCTCTCCCTCTC 60.528 68.421 0.00 0.00 0.00 3.20
932 984 1.747325 CTCTCCCTCTAGCTGCTGCC 61.747 65.000 13.43 0.00 40.80 4.85
943 995 4.703060 TGCTGCCGCTGCTTGCTA 62.703 61.111 21.13 0.00 40.11 3.49
944 996 3.873883 GCTGCCGCTGCTTGCTAG 61.874 66.667 14.47 8.53 40.11 3.42
946 998 2.434884 TGCCGCTGCTTGCTAGTC 60.435 61.111 11.42 0.00 40.11 2.59
951 1003 1.153269 GCTGCTTGCTAGTCCTCCC 60.153 63.158 0.00 0.00 38.95 4.30
954 1006 2.501610 CTTGCTAGTCCTCCCCGC 59.498 66.667 0.00 0.00 0.00 6.13
1041 1103 2.821688 GCCGCTGCTGATGCTTCTC 61.822 63.158 0.00 0.00 40.48 2.87
1042 1104 2.523507 CCGCTGCTGATGCTTCTCG 61.524 63.158 0.00 0.00 40.48 4.04
1043 1105 2.523507 CGCTGCTGATGCTTCTCGG 61.524 63.158 0.00 0.04 40.48 4.63
1045 1116 2.124983 TGCTGATGCTTCTCGGCC 60.125 61.111 11.21 0.00 45.22 6.13
1049 1120 2.899339 GATGCTTCTCGGCCTGGC 60.899 66.667 11.05 11.05 0.00 4.85
1113 1190 1.360551 CGATCCGCTCTACAGGTGG 59.639 63.158 0.00 0.00 35.84 4.61
1115 1192 0.755698 GATCCGCTCTACAGGTGGGA 60.756 60.000 0.00 0.00 35.30 4.37
1118 1195 1.668101 CCGCTCTACAGGTGGGACTC 61.668 65.000 0.00 0.00 0.00 3.36
1122 1199 0.790993 TCTACAGGTGGGACTCCCTT 59.209 55.000 15.64 0.00 45.70 3.95
1145 1223 2.897350 CCGAGATTCCGCCCTTGC 60.897 66.667 0.00 0.00 0.00 4.01
1146 1224 2.897350 CGAGATTCCGCCCTTGCC 60.897 66.667 0.00 0.00 0.00 4.52
1148 1226 1.821332 GAGATTCCGCCCTTGCCTG 60.821 63.158 0.00 0.00 0.00 4.85
1149 1227 2.044946 GATTCCGCCCTTGCCTGT 60.045 61.111 0.00 0.00 0.00 4.00
1150 1228 1.678970 GATTCCGCCCTTGCCTGTT 60.679 57.895 0.00 0.00 0.00 3.16
1151 1229 1.228862 ATTCCGCCCTTGCCTGTTT 60.229 52.632 0.00 0.00 0.00 2.83
1152 1230 0.039035 ATTCCGCCCTTGCCTGTTTA 59.961 50.000 0.00 0.00 0.00 2.01
1153 1231 0.891904 TTCCGCCCTTGCCTGTTTAC 60.892 55.000 0.00 0.00 0.00 2.01
1154 1232 1.303317 CCGCCCTTGCCTGTTTACT 60.303 57.895 0.00 0.00 0.00 2.24
1192 1270 1.375326 GGTTCCCGCTCCTTGAGTT 59.625 57.895 0.00 0.00 31.39 3.01
1193 1271 0.955919 GGTTCCCGCTCCTTGAGTTG 60.956 60.000 0.00 0.00 31.39 3.16
1194 1272 1.302511 TTCCCGCTCCTTGAGTTGC 60.303 57.895 0.00 0.00 31.39 4.17
1195 1273 3.121030 CCCGCTCCTTGAGTTGCG 61.121 66.667 0.00 0.00 46.74 4.85
1196 1274 2.357517 CCGCTCCTTGAGTTGCGT 60.358 61.111 0.00 0.00 45.90 5.24
1197 1275 2.671177 CCGCTCCTTGAGTTGCGTG 61.671 63.158 0.00 0.00 45.90 5.34
1201 1279 1.845809 CTCCTTGAGTTGCGTGTGCC 61.846 60.000 0.00 0.00 41.78 5.01
1202 1280 1.893808 CCTTGAGTTGCGTGTGCCT 60.894 57.895 0.00 0.00 41.78 4.75
1203 1281 1.447317 CCTTGAGTTGCGTGTGCCTT 61.447 55.000 0.00 0.00 41.78 4.35
1205 1283 1.723608 TTGAGTTGCGTGTGCCTTGG 61.724 55.000 0.00 0.00 41.78 3.61
1206 1284 2.124320 AGTTGCGTGTGCCTTGGT 60.124 55.556 0.00 0.00 41.78 3.67
1207 1285 2.117941 GAGTTGCGTGTGCCTTGGTC 62.118 60.000 0.00 0.00 41.78 4.02
1208 1286 2.186826 GTTGCGTGTGCCTTGGTCT 61.187 57.895 0.00 0.00 41.78 3.85
1209 1287 1.453015 TTGCGTGTGCCTTGGTCTT 60.453 52.632 0.00 0.00 41.78 3.01
1210 1288 1.723608 TTGCGTGTGCCTTGGTCTTG 61.724 55.000 0.00 0.00 41.78 3.02
1236 1314 1.723542 CTCTGATGCCGATTGCGTATC 59.276 52.381 0.00 0.00 45.60 2.24
1265 1343 2.673341 TCGCCGACTGTCAGAGCT 60.673 61.111 6.91 0.00 0.00 4.09
1266 1344 2.505777 CGCCGACTGTCAGAGCTG 60.506 66.667 6.91 0.00 0.00 4.24
1268 1346 2.505777 CCGACTGTCAGAGCTGCG 60.506 66.667 6.91 2.34 0.00 5.18
1270 1348 2.085262 CGACTGTCAGAGCTGCGTG 61.085 63.158 6.91 0.00 0.00 5.34
1287 1365 1.967908 CGTGCTAATAGTACGCTACGC 59.032 52.381 17.01 0.00 46.22 4.42
1306 1384 3.483959 GCTCTCGCCTTCTTGCTG 58.516 61.111 0.00 0.00 0.00 4.41
1307 1385 2.748843 GCTCTCGCCTTCTTGCTGC 61.749 63.158 0.00 0.00 0.00 5.25
1308 1386 1.079266 CTCTCGCCTTCTTGCTGCT 60.079 57.895 0.00 0.00 0.00 4.24
1309 1387 1.360194 CTCTCGCCTTCTTGCTGCTG 61.360 60.000 0.00 0.00 0.00 4.41
1310 1388 3.036783 CTCGCCTTCTTGCTGCTGC 62.037 63.158 8.89 8.89 40.20 5.25
1311 1389 3.054503 CGCCTTCTTGCTGCTGCT 61.055 61.111 17.00 0.00 40.48 4.24
1312 1390 2.567049 GCCTTCTTGCTGCTGCTG 59.433 61.111 17.00 9.59 40.48 4.41
1313 1391 2.567049 CCTTCTTGCTGCTGCTGC 59.433 61.111 22.51 22.51 40.48 5.25
1314 1392 1.972223 CCTTCTTGCTGCTGCTGCT 60.972 57.895 27.67 0.00 40.48 4.24
1315 1393 1.210413 CTTCTTGCTGCTGCTGCTG 59.790 57.895 27.67 20.66 40.48 4.41
1332 1410 2.159043 TGCTGCTGCTACCATCTTCTAC 60.159 50.000 17.00 0.00 40.48 2.59
1349 1427 3.346315 TCTACCACATGCTGTTGATTGG 58.654 45.455 0.00 0.00 0.00 3.16
1385 1464 9.723601 ATTGATACTACCAGTACTAGTACTAGC 57.276 37.037 30.34 18.96 43.98 3.42
1433 1519 7.912383 TGCAACTTCAACTAGTTTTGTAGTAC 58.088 34.615 5.07 3.50 36.43 2.73
1437 1523 8.883954 ACTTCAACTAGTTTTGTAGTACTTCC 57.116 34.615 5.07 0.00 35.89 3.46
1438 1524 7.930325 ACTTCAACTAGTTTTGTAGTACTTCCC 59.070 37.037 5.07 0.00 35.89 3.97
1439 1525 7.607615 TCAACTAGTTTTGTAGTACTTCCCT 57.392 36.000 5.07 0.00 32.69 4.20
1440 1526 8.710749 TCAACTAGTTTTGTAGTACTTCCCTA 57.289 34.615 5.07 0.00 32.69 3.53
1441 1527 8.800332 TCAACTAGTTTTGTAGTACTTCCCTAG 58.200 37.037 5.07 6.00 32.69 3.02
1442 1528 8.800332 CAACTAGTTTTGTAGTACTTCCCTAGA 58.200 37.037 5.07 0.00 32.69 2.43
1443 1529 8.578448 ACTAGTTTTGTAGTACTTCCCTAGAG 57.422 38.462 0.00 0.00 31.14 2.43
1444 1530 6.283544 AGTTTTGTAGTACTTCCCTAGAGC 57.716 41.667 0.00 0.00 0.00 4.09
1445 1531 6.017830 AGTTTTGTAGTACTTCCCTAGAGCT 58.982 40.000 0.00 0.00 0.00 4.09
1446 1532 5.916661 TTTGTAGTACTTCCCTAGAGCTG 57.083 43.478 0.00 0.00 0.00 4.24
1447 1533 3.899726 TGTAGTACTTCCCTAGAGCTGG 58.100 50.000 0.00 0.00 0.00 4.85
1448 1534 2.463047 AGTACTTCCCTAGAGCTGGG 57.537 55.000 0.93 0.93 45.90 4.45
1456 1542 1.055040 CCTAGAGCTGGGATGGGAAG 58.945 60.000 0.00 0.00 32.26 3.46
1474 1560 1.081242 GATTTGCCCGCACTGTGTG 60.081 57.895 14.19 14.19 36.51 3.82
1491 1847 4.452733 GCCACTTCCCTCCGTCCG 62.453 72.222 0.00 0.00 0.00 4.79
1496 1852 2.524887 TTCCCTCCGTCCGGTTGT 60.525 61.111 0.00 0.00 36.47 3.32
1498 1854 3.622826 CCCTCCGTCCGGTTGTGT 61.623 66.667 0.00 0.00 36.47 3.72
1499 1855 2.424302 CCTCCGTCCGGTTGTGTT 59.576 61.111 0.00 0.00 36.47 3.32
1500 1856 1.227734 CCTCCGTCCGGTTGTGTTT 60.228 57.895 0.00 0.00 36.47 2.83
1501 1857 1.503818 CCTCCGTCCGGTTGTGTTTG 61.504 60.000 0.00 0.00 36.47 2.93
1502 1858 2.113131 CTCCGTCCGGTTGTGTTTGC 62.113 60.000 0.00 0.00 36.47 3.68
1504 1860 2.725641 GTCCGGTTGTGTTTGCCC 59.274 61.111 0.00 0.00 0.00 5.36
1505 1861 2.122167 GTCCGGTTGTGTTTGCCCA 61.122 57.895 0.00 0.00 0.00 5.36
1506 1862 1.379977 TCCGGTTGTGTTTGCCCAA 60.380 52.632 0.00 0.00 0.00 4.12
1507 1863 1.227118 CCGGTTGTGTTTGCCCAAC 60.227 57.895 0.00 0.00 40.12 3.77
1508 1864 1.513158 CGGTTGTGTTTGCCCAACA 59.487 52.632 0.00 0.00 43.55 3.33
1527 1912 7.352739 CCCAACAATATAGTAATTTCAGCGAC 58.647 38.462 0.00 0.00 0.00 5.19
1553 1938 2.689983 GTTTGCTTACTGCTGCCCATAT 59.310 45.455 0.00 0.00 43.37 1.78
1554 1939 2.260844 TGCTTACTGCTGCCCATATC 57.739 50.000 0.00 0.00 43.37 1.63
1562 1947 0.322975 GCTGCCCATATCATCGACCT 59.677 55.000 0.00 0.00 0.00 3.85
1576 1961 4.456806 ACCTTGTCGGTTCAGTGC 57.543 55.556 0.00 0.00 46.37 4.40
1630 2025 3.307242 GTGCCAGATCTCGTGTTAACATC 59.693 47.826 12.26 4.80 0.00 3.06
1659 2054 4.553330 TTGGACCTGGAAATCTGTCTAC 57.447 45.455 0.00 0.00 0.00 2.59
1660 2055 2.838202 TGGACCTGGAAATCTGTCTACC 59.162 50.000 0.00 0.00 0.00 3.18
1690 2139 5.301045 TCCATTGGATGCTTGAATTCAGATC 59.699 40.000 8.41 10.98 0.00 2.75
1717 2166 8.542953 TCGAATTCAGTCATATTCAGAATTTCG 58.457 33.333 6.22 7.58 38.58 3.46
1748 2209 6.016276 AGGAACATTAGCAACGACAAAGAAAT 60.016 34.615 0.00 0.00 0.00 2.17
1772 2239 8.743085 ATACTACTCTGTACCGTCTTTTCATA 57.257 34.615 0.00 0.00 0.00 2.15
1778 2245 4.562082 TGTACCGTCTTTTCATACCACTG 58.438 43.478 0.00 0.00 0.00 3.66
1793 2260 3.761897 ACCACTGCTGTATTTGGCTTTA 58.238 40.909 0.00 0.00 31.76 1.85
1794 2261 4.344104 ACCACTGCTGTATTTGGCTTTAT 58.656 39.130 0.00 0.00 31.76 1.40
1795 2262 4.158394 ACCACTGCTGTATTTGGCTTTATG 59.842 41.667 0.00 0.00 31.76 1.90
1796 2263 4.398988 CCACTGCTGTATTTGGCTTTATGA 59.601 41.667 0.00 0.00 0.00 2.15
1797 2264 5.068198 CCACTGCTGTATTTGGCTTTATGAT 59.932 40.000 0.00 0.00 0.00 2.45
1798 2265 5.975344 CACTGCTGTATTTGGCTTTATGATG 59.025 40.000 0.00 0.00 0.00 3.07
1817 2290 3.957671 TGATGAAGATGCGCTGATTTC 57.042 42.857 9.73 8.16 0.00 2.17
1833 2319 6.091305 CGCTGATTTCTTCATACAGTTTGAGA 59.909 38.462 0.00 0.00 32.72 3.27
1834 2320 7.239972 GCTGATTTCTTCATACAGTTTGAGAC 58.760 38.462 0.00 0.00 32.72 3.36
1835 2321 7.118971 GCTGATTTCTTCATACAGTTTGAGACT 59.881 37.037 0.00 0.00 34.30 3.24
1836 2322 8.908786 TGATTTCTTCATACAGTTTGAGACTT 57.091 30.769 0.00 0.00 36.10 3.01
1837 2323 8.777413 TGATTTCTTCATACAGTTTGAGACTTG 58.223 33.333 0.00 0.00 36.10 3.16
1838 2324 7.496529 TTTCTTCATACAGTTTGAGACTTGG 57.503 36.000 0.00 0.00 36.10 3.61
1857 2343 1.588082 CCAGCAACCAACCAGCATC 59.412 57.895 0.00 0.00 0.00 3.91
1864 2350 3.872240 GCAACCAACCAGCATCCTAGTAA 60.872 47.826 0.00 0.00 0.00 2.24
1882 2368 9.667107 TCCTAGTAATTACTCATGTTTTCCTTG 57.333 33.333 21.25 0.00 37.73 3.61
1884 2370 6.842163 AGTAATTACTCATGTTTTCCTTGCG 58.158 36.000 12.50 0.00 0.00 4.85
1983 2469 4.530857 CCGACCGATGACCAGCCC 62.531 72.222 0.00 0.00 0.00 5.19
2022 2508 1.421410 CGCACGAGCCATTGTACCTC 61.421 60.000 0.00 0.00 37.52 3.85
2175 2661 2.054232 TTCAGGTACCTCTAGCTCCG 57.946 55.000 12.84 0.00 0.00 4.63
2501 2993 5.513495 GTCTAGCAGTCTACGTTTTCAGATG 59.487 44.000 0.00 0.00 0.00 2.90
2535 3027 6.312918 GTCGACAGTTAATTAATCCAGCTTGA 59.687 38.462 11.55 0.00 0.00 3.02
2849 3341 5.777732 TGGTGGTAGTGCTGGAAATTAAAAT 59.222 36.000 0.00 0.00 0.00 1.82
2930 3424 0.108615 GCGTTGCTCAGCTCCTTCTA 60.109 55.000 0.00 0.00 0.00 2.10
2980 3474 2.357034 TTCACGCCTGAAGGTCGC 60.357 61.111 11.45 0.00 37.94 5.19
2996 3490 2.625823 CGCCTTTGTTGCCATCGGT 61.626 57.895 0.00 0.00 0.00 4.69
3023 3517 3.052869 TCCTCTCACTATACCTGGAAGCA 60.053 47.826 0.00 0.00 0.00 3.91
3169 3663 7.243487 GCAATCATGAAGAAGAAACGATAACA 58.757 34.615 0.00 0.00 0.00 2.41
3363 3863 5.437060 TGTGATAGCCCTTTGTATTTCTCC 58.563 41.667 0.00 0.00 0.00 3.71
3373 3873 7.526359 GCCCTTTGTATTTCTCCCATTTACAAA 60.526 37.037 0.00 0.00 39.27 2.83
3385 3893 5.600484 TCCCATTTACAAACCAATTGAGTGT 59.400 36.000 7.12 10.03 41.85 3.55
3386 3894 5.695816 CCCATTTACAAACCAATTGAGTGTG 59.304 40.000 7.12 10.84 41.85 3.82
3388 3896 6.420604 CCATTTACAAACCAATTGAGTGTGTC 59.579 38.462 19.83 0.00 41.85 3.67
3404 3922 3.126000 GTGTGTCCATCTCTTTTAGCTGC 59.874 47.826 0.00 0.00 0.00 5.25
3434 3952 6.497624 AGCAGTTCTGATCTCTATGGATTT 57.502 37.500 3.84 0.00 0.00 2.17
3442 3960 6.153510 TCTGATCTCTATGGATTTGATACCGG 59.846 42.308 0.00 0.00 0.00 5.28
3464 3982 5.740569 CGGAACATGATCTTATGCTTTTGTG 59.259 40.000 0.00 0.00 0.00 3.33
3465 3983 6.623549 CGGAACATGATCTTATGCTTTTGTGT 60.624 38.462 0.00 0.00 0.00 3.72
3466 3984 6.749118 GGAACATGATCTTATGCTTTTGTGTC 59.251 38.462 0.00 0.00 0.00 3.67
3480 3998 8.523523 TGCTTTTGTGTCTTTGATTGATTATG 57.476 30.769 0.00 0.00 0.00 1.90
3481 3999 8.358895 TGCTTTTGTGTCTTTGATTGATTATGA 58.641 29.630 0.00 0.00 0.00 2.15
3490 4008 8.778358 GTCTTTGATTGATTATGAGATGGTACC 58.222 37.037 4.43 4.43 0.00 3.34
3495 4013 4.577096 TGATTATGAGATGGTACCCCCTT 58.423 43.478 10.07 0.00 0.00 3.95
3501 4019 0.179702 GATGGTACCCCCTTCGTTCC 59.820 60.000 10.07 0.00 0.00 3.62
3603 4191 3.880047 TGTACCCTACGTGATTTGGAG 57.120 47.619 0.00 0.00 0.00 3.86
3604 4192 3.167485 TGTACCCTACGTGATTTGGAGT 58.833 45.455 0.00 0.00 0.00 3.85
3619 4207 9.341899 GTGATTTGGAGTAATGTTTGATAACAC 57.658 33.333 0.00 0.00 46.38 3.32
3666 4261 8.792633 CAACAAAGAGGTTTGAGTGGATTATTA 58.207 33.333 4.91 0.00 45.22 0.98
3836 4585 1.468520 ACATGTACAAATCCACAGCGC 59.531 47.619 0.00 0.00 0.00 5.92
3837 4586 1.739466 CATGTACAAATCCACAGCGCT 59.261 47.619 2.64 2.64 0.00 5.92
3839 4588 3.046968 TGTACAAATCCACAGCGCTAA 57.953 42.857 10.99 0.00 0.00 3.09
3840 4589 3.403968 TGTACAAATCCACAGCGCTAAA 58.596 40.909 10.99 0.00 0.00 1.85
3842 4591 4.457603 TGTACAAATCCACAGCGCTAAATT 59.542 37.500 10.99 4.70 0.00 1.82
3843 4592 4.519540 ACAAATCCACAGCGCTAAATTT 57.480 36.364 10.99 10.84 0.00 1.82
3888 4766 5.873179 TTTTTCTAGAACGGCCACATAAG 57.127 39.130 4.18 0.00 0.00 1.73
3969 4847 2.813908 CGCAGCCCGTTGTACTCC 60.814 66.667 0.00 0.00 0.00 3.85
3970 4848 2.436115 GCAGCCCGTTGTACTCCC 60.436 66.667 0.00 0.00 0.00 4.30
3971 4849 2.955881 GCAGCCCGTTGTACTCCCT 61.956 63.158 0.00 0.00 0.00 4.20
3972 4850 1.218316 CAGCCCGTTGTACTCCCTC 59.782 63.158 0.00 0.00 0.00 4.30
3973 4851 1.988406 AGCCCGTTGTACTCCCTCC 60.988 63.158 0.00 0.00 0.00 4.30
3974 4852 2.890371 CCCGTTGTACTCCCTCCG 59.110 66.667 0.00 0.00 0.00 4.63
3975 4853 1.980772 CCCGTTGTACTCCCTCCGT 60.981 63.158 0.00 0.00 0.00 4.69
3976 4854 1.509923 CCGTTGTACTCCCTCCGTC 59.490 63.158 0.00 0.00 0.00 4.79
3977 4855 1.509923 CGTTGTACTCCCTCCGTCC 59.490 63.158 0.00 0.00 0.00 4.79
3978 4856 1.895966 GTTGTACTCCCTCCGTCCC 59.104 63.158 0.00 0.00 0.00 4.46
3979 4857 0.901580 GTTGTACTCCCTCCGTCCCA 60.902 60.000 0.00 0.00 0.00 4.37
3980 4858 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
3981 4859 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
3982 4860 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
3983 4861 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
3984 4862 0.618981 ACTCCCTCCGTCCCAAAATC 59.381 55.000 0.00 0.00 0.00 2.17
3985 4863 0.107165 CTCCCTCCGTCCCAAAATCC 60.107 60.000 0.00 0.00 0.00 3.01
3986 4864 0.549169 TCCCTCCGTCCCAAAATCCT 60.549 55.000 0.00 0.00 0.00 3.24
3987 4865 0.331616 CCCTCCGTCCCAAAATCCTT 59.668 55.000 0.00 0.00 0.00 3.36
3988 4866 1.463674 CCTCCGTCCCAAAATCCTTG 58.536 55.000 0.00 0.00 0.00 3.61
3989 4867 1.271926 CCTCCGTCCCAAAATCCTTGT 60.272 52.381 0.00 0.00 0.00 3.16
3990 4868 2.084546 CTCCGTCCCAAAATCCTTGTC 58.915 52.381 0.00 0.00 0.00 3.18
3991 4869 1.702957 TCCGTCCCAAAATCCTTGTCT 59.297 47.619 0.00 0.00 0.00 3.41
3992 4870 2.107552 TCCGTCCCAAAATCCTTGTCTT 59.892 45.455 0.00 0.00 0.00 3.01
3993 4871 3.328343 TCCGTCCCAAAATCCTTGTCTTA 59.672 43.478 0.00 0.00 0.00 2.10
3994 4872 3.689649 CCGTCCCAAAATCCTTGTCTTAG 59.310 47.826 0.00 0.00 0.00 2.18
3995 4873 4.564821 CCGTCCCAAAATCCTTGTCTTAGA 60.565 45.833 0.00 0.00 0.00 2.10
3996 4874 5.186198 CGTCCCAAAATCCTTGTCTTAGAT 58.814 41.667 0.00 0.00 0.00 1.98
3997 4875 5.648092 CGTCCCAAAATCCTTGTCTTAGATT 59.352 40.000 0.00 0.00 0.00 2.40
3998 4876 6.151144 CGTCCCAAAATCCTTGTCTTAGATTT 59.849 38.462 0.00 0.00 40.92 2.17
3999 4877 7.315890 GTCCCAAAATCCTTGTCTTAGATTTG 58.684 38.462 0.00 0.00 39.51 2.32
4000 4878 7.010160 TCCCAAAATCCTTGTCTTAGATTTGT 58.990 34.615 0.00 0.00 39.51 2.83
4001 4879 7.176690 TCCCAAAATCCTTGTCTTAGATTTGTC 59.823 37.037 0.00 0.00 39.51 3.18
4002 4880 7.177392 CCCAAAATCCTTGTCTTAGATTTGTCT 59.823 37.037 0.00 0.00 39.51 3.41
4003 4881 9.231297 CCAAAATCCTTGTCTTAGATTTGTCTA 57.769 33.333 0.00 0.00 39.51 2.59
4009 4887 9.582431 TCCTTGTCTTAGATTTGTCTAAATACG 57.418 33.333 0.26 0.00 36.66 3.06
4010 4888 8.818057 CCTTGTCTTAGATTTGTCTAAATACGG 58.182 37.037 0.26 0.00 36.66 4.02
4011 4889 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
4013 4891 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
4014 4892 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
4021 4899 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
4022 4900 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
4023 4901 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
4024 4902 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
4025 4903 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
4026 4904 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
4027 4905 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
4028 4906 3.250744 ACGGATGTATCAAGTCACGTTG 58.749 45.455 0.00 0.00 0.00 4.10
4029 4907 3.057104 ACGGATGTATCAAGTCACGTTGA 60.057 43.478 0.00 0.00 40.68 3.18
4030 4908 7.168581 ATACGGATGTATCAAGTCACGTTGAC 61.169 42.308 9.30 9.30 41.18 3.18
4031 4909 9.439994 ATACGGATGTATCAAGTCACGTTGACA 62.440 40.741 16.74 2.47 42.32 3.58
4042 4920 4.041723 GTCACGTTGACAAGAATTTTGGG 58.958 43.478 11.62 0.00 46.22 4.12
4043 4921 3.948473 TCACGTTGACAAGAATTTTGGGA 59.052 39.130 0.00 0.00 0.00 4.37
4044 4922 4.041723 CACGTTGACAAGAATTTTGGGAC 58.958 43.478 0.00 0.00 0.00 4.46
4045 4923 3.242936 ACGTTGACAAGAATTTTGGGACG 60.243 43.478 15.10 15.10 33.05 4.79
4046 4924 3.638484 GTTGACAAGAATTTTGGGACGG 58.362 45.455 0.00 0.00 0.00 4.79
4047 4925 3.216187 TGACAAGAATTTTGGGACGGA 57.784 42.857 0.00 0.00 0.00 4.69
4048 4926 3.146066 TGACAAGAATTTTGGGACGGAG 58.854 45.455 0.00 0.00 0.00 4.63
4049 4927 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
4050 4928 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
4051 4929 0.331616 AGAATTTTGGGACGGAGGGG 59.668 55.000 0.00 0.00 0.00 4.79
4052 4930 0.683179 GAATTTTGGGACGGAGGGGG 60.683 60.000 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.361737 GCCCACCTTTGCTCCCTC 60.362 66.667 0.00 0.00 0.00 4.30
2 3 3.185203 TGCCCACCTTTGCTCCCT 61.185 61.111 0.00 0.00 0.00 4.20
3 4 2.505364 ATCTGCCCACCTTTGCTCCC 62.505 60.000 0.00 0.00 0.00 4.30
4 5 1.000396 ATCTGCCCACCTTTGCTCC 60.000 57.895 0.00 0.00 0.00 4.70
6 7 0.896940 CACATCTGCCCACCTTTGCT 60.897 55.000 0.00 0.00 0.00 3.91
7 8 1.588082 CACATCTGCCCACCTTTGC 59.412 57.895 0.00 0.00 0.00 3.68
8 9 0.251297 TCCACATCTGCCCACCTTTG 60.251 55.000 0.00 0.00 0.00 2.77
9 10 0.251341 GTCCACATCTGCCCACCTTT 60.251 55.000 0.00 0.00 0.00 3.11
10 11 1.380302 GTCCACATCTGCCCACCTT 59.620 57.895 0.00 0.00 0.00 3.50
11 12 2.959484 CGTCCACATCTGCCCACCT 61.959 63.158 0.00 0.00 0.00 4.00
12 13 2.436646 CGTCCACATCTGCCCACC 60.437 66.667 0.00 0.00 0.00 4.61
13 14 2.436646 CCGTCCACATCTGCCCAC 60.437 66.667 0.00 0.00 0.00 4.61
14 15 4.408821 GCCGTCCACATCTGCCCA 62.409 66.667 0.00 0.00 0.00 5.36
16 17 4.451150 TCGCCGTCCACATCTGCC 62.451 66.667 0.00 0.00 0.00 4.85
17 18 2.279502 TACTCGCCGTCCACATCTGC 62.280 60.000 0.00 0.00 0.00 4.26
18 19 0.385751 ATACTCGCCGTCCACATCTG 59.614 55.000 0.00 0.00 0.00 2.90
19 20 0.385751 CATACTCGCCGTCCACATCT 59.614 55.000 0.00 0.00 0.00 2.90
20 21 0.597637 CCATACTCGCCGTCCACATC 60.598 60.000 0.00 0.00 0.00 3.06
21 22 1.040893 TCCATACTCGCCGTCCACAT 61.041 55.000 0.00 0.00 0.00 3.21
22 23 1.040893 ATCCATACTCGCCGTCCACA 61.041 55.000 0.00 0.00 0.00 4.17
23 24 0.597637 CATCCATACTCGCCGTCCAC 60.598 60.000 0.00 0.00 0.00 4.02
24 25 0.753848 TCATCCATACTCGCCGTCCA 60.754 55.000 0.00 0.00 0.00 4.02
25 26 0.039074 CTCATCCATACTCGCCGTCC 60.039 60.000 0.00 0.00 0.00 4.79
26 27 0.039074 CCTCATCCATACTCGCCGTC 60.039 60.000 0.00 0.00 0.00 4.79
27 28 0.467474 TCCTCATCCATACTCGCCGT 60.467 55.000 0.00 0.00 0.00 5.68
28 29 0.039074 GTCCTCATCCATACTCGCCG 60.039 60.000 0.00 0.00 0.00 6.46
29 30 0.039074 CGTCCTCATCCATACTCGCC 60.039 60.000 0.00 0.00 0.00 5.54
30 31 0.039074 CCGTCCTCATCCATACTCGC 60.039 60.000 0.00 0.00 0.00 5.03
31 32 0.039074 GCCGTCCTCATCCATACTCG 60.039 60.000 0.00 0.00 0.00 4.18
32 33 0.318762 GGCCGTCCTCATCCATACTC 59.681 60.000 0.00 0.00 0.00 2.59
33 34 1.122019 GGGCCGTCCTCATCCATACT 61.122 60.000 0.00 0.00 0.00 2.12
34 35 1.371558 GGGCCGTCCTCATCCATAC 59.628 63.158 0.00 0.00 0.00 2.39
35 36 1.841556 GGGGCCGTCCTCATCCATA 60.842 63.158 0.00 0.00 35.33 2.74
36 37 3.171388 GGGGCCGTCCTCATCCAT 61.171 66.667 0.00 0.00 35.33 3.41
54 55 1.847890 TTTTAAGCCGACCGTGCAGC 61.848 55.000 0.00 0.00 0.00 5.25
55 56 0.589223 TTTTTAAGCCGACCGTGCAG 59.411 50.000 0.00 0.00 0.00 4.41
56 57 2.704108 TTTTTAAGCCGACCGTGCA 58.296 47.368 5.87 0.00 0.00 4.57
97 98 2.839043 TTTATGACGACGGGCCCACG 62.839 60.000 28.91 28.91 40.31 4.94
98 99 0.463116 ATTTATGACGACGGGCCCAC 60.463 55.000 24.92 14.45 0.00 4.61
99 100 0.253610 AATTTATGACGACGGGCCCA 59.746 50.000 24.92 0.00 0.00 5.36
100 101 2.243602 TAATTTATGACGACGGGCCC 57.756 50.000 13.57 13.57 0.00 5.80
101 102 2.032290 GCTTAATTTATGACGACGGGCC 60.032 50.000 0.00 0.00 0.00 5.80
102 103 2.870411 AGCTTAATTTATGACGACGGGC 59.130 45.455 0.00 0.00 0.00 6.13
103 104 4.025979 GTCAGCTTAATTTATGACGACGGG 60.026 45.833 0.00 0.00 33.42 5.28
104 105 4.025979 GGTCAGCTTAATTTATGACGACGG 60.026 45.833 0.00 0.00 42.34 4.79
105 106 4.317139 CGGTCAGCTTAATTTATGACGACG 60.317 45.833 0.00 0.00 42.34 5.12
106 107 4.550255 GCGGTCAGCTTAATTTATGACGAC 60.550 45.833 0.00 0.00 42.34 4.34
107 108 3.554324 GCGGTCAGCTTAATTTATGACGA 59.446 43.478 0.00 0.00 42.34 4.20
108 109 3.601586 CGCGGTCAGCTTAATTTATGACG 60.602 47.826 0.00 0.00 45.59 4.35
109 110 3.308866 ACGCGGTCAGCTTAATTTATGAC 59.691 43.478 12.47 0.00 45.59 3.06
110 111 3.308595 CACGCGGTCAGCTTAATTTATGA 59.691 43.478 12.47 0.00 45.59 2.15
111 112 3.546020 CCACGCGGTCAGCTTAATTTATG 60.546 47.826 12.47 0.00 45.59 1.90
112 113 2.612212 CCACGCGGTCAGCTTAATTTAT 59.388 45.455 12.47 0.00 45.59 1.40
113 114 2.004017 CCACGCGGTCAGCTTAATTTA 58.996 47.619 12.47 0.00 45.59 1.40
114 115 0.802494 CCACGCGGTCAGCTTAATTT 59.198 50.000 12.47 0.00 45.59 1.82
115 116 1.024579 CCCACGCGGTCAGCTTAATT 61.025 55.000 12.47 0.00 45.59 1.40
116 117 1.449601 CCCACGCGGTCAGCTTAAT 60.450 57.895 12.47 0.00 45.59 1.40
117 118 2.047655 CCCACGCGGTCAGCTTAA 60.048 61.111 12.47 0.00 45.59 1.85
118 119 4.752879 GCCCACGCGGTCAGCTTA 62.753 66.667 12.47 0.00 45.59 3.09
129 130 4.388499 AACTACCCGCTGCCCACG 62.388 66.667 0.00 0.00 0.00 4.94
130 131 2.746277 CAACTACCCGCTGCCCAC 60.746 66.667 0.00 0.00 0.00 4.61
131 132 4.028490 CCAACTACCCGCTGCCCA 62.028 66.667 0.00 0.00 0.00 5.36
132 133 3.712907 TCCAACTACCCGCTGCCC 61.713 66.667 0.00 0.00 0.00 5.36
133 134 2.436115 GTCCAACTACCCGCTGCC 60.436 66.667 0.00 0.00 0.00 4.85
134 135 2.813908 CGTCCAACTACCCGCTGC 60.814 66.667 0.00 0.00 0.00 5.25
135 136 2.125673 CCGTCCAACTACCCGCTG 60.126 66.667 0.00 0.00 0.00 5.18
136 137 4.078516 GCCGTCCAACTACCCGCT 62.079 66.667 0.00 0.00 0.00 5.52
138 139 4.807039 CGGCCGTCCAACTACCCG 62.807 72.222 19.50 0.00 0.00 5.28
141 142 3.675619 ATGGCGGCCGTCCAACTAC 62.676 63.158 34.25 14.76 37.13 2.73
142 143 3.395702 ATGGCGGCCGTCCAACTA 61.396 61.111 34.25 16.48 37.13 2.24
169 170 3.121030 CTTTCCCGCTGTCCGCAG 61.121 66.667 0.00 0.00 45.23 5.18
192 193 2.799540 GATGCCGAACGGACGCTTC 61.800 63.158 17.63 5.88 37.50 3.86
193 194 2.813908 GATGCCGAACGGACGCTT 60.814 61.111 17.63 0.14 37.50 4.68
194 195 4.814294 GGATGCCGAACGGACGCT 62.814 66.667 17.63 0.00 37.50 5.07
223 224 0.250081 GTCCAAATTTGCGCCCCAAA 60.250 50.000 12.92 0.00 46.64 3.28
224 225 1.369321 GTCCAAATTTGCGCCCCAA 59.631 52.632 12.92 0.00 0.00 4.12
225 226 2.578714 GGTCCAAATTTGCGCCCCA 61.579 57.895 12.92 0.00 0.00 4.96
226 227 2.264480 GGTCCAAATTTGCGCCCC 59.736 61.111 12.92 5.44 0.00 5.80
227 228 2.126110 CGGTCCAAATTTGCGCCC 60.126 61.111 12.92 10.15 0.00 6.13
228 229 2.809174 GCGGTCCAAATTTGCGCC 60.809 61.111 22.98 19.10 33.23 6.53
229 230 1.218230 TTTGCGGTCCAAATTTGCGC 61.218 50.000 25.25 25.25 38.46 6.09
230 231 2.892305 TTTGCGGTCCAAATTTGCG 58.108 47.368 12.92 11.82 38.46 4.85
257 258 4.318021 ACGTCCGTGTCGTCCGTG 62.318 66.667 0.00 0.00 36.85 4.94
258 259 4.318021 CACGTCCGTGTCGTCCGT 62.318 66.667 11.49 0.00 40.91 4.69
259 260 2.791396 AATCACGTCCGTGTCGTCCG 62.791 60.000 18.23 0.00 45.55 4.79
260 261 0.665369 AAATCACGTCCGTGTCGTCC 60.665 55.000 18.23 0.00 45.55 4.79
261 262 0.433492 CAAATCACGTCCGTGTCGTC 59.567 55.000 18.23 0.00 45.55 4.20
262 263 0.942410 CCAAATCACGTCCGTGTCGT 60.942 55.000 18.23 4.84 45.55 4.34
263 264 0.942410 ACCAAATCACGTCCGTGTCG 60.942 55.000 18.23 6.63 45.55 4.35
264 265 1.223187 AACCAAATCACGTCCGTGTC 58.777 50.000 18.23 0.00 45.55 3.67
265 266 1.670791 AAACCAAATCACGTCCGTGT 58.329 45.000 18.23 4.69 45.55 4.49
266 267 2.380660 CAAAACCAAATCACGTCCGTG 58.619 47.619 13.37 13.37 46.64 4.94
267 268 1.335496 CCAAAACCAAATCACGTCCGT 59.665 47.619 0.00 0.00 0.00 4.69
268 269 1.335506 CCCAAAACCAAATCACGTCCG 60.336 52.381 0.00 0.00 0.00 4.79
269 270 1.684450 ACCCAAAACCAAATCACGTCC 59.316 47.619 0.00 0.00 0.00 4.79
270 271 2.603652 CGACCCAAAACCAAATCACGTC 60.604 50.000 0.00 0.00 0.00 4.34
271 272 1.335496 CGACCCAAAACCAAATCACGT 59.665 47.619 0.00 0.00 0.00 4.49
272 273 1.335506 CCGACCCAAAACCAAATCACG 60.336 52.381 0.00 0.00 0.00 4.35
273 274 1.604438 GCCGACCCAAAACCAAATCAC 60.604 52.381 0.00 0.00 0.00 3.06
274 275 0.676736 GCCGACCCAAAACCAAATCA 59.323 50.000 0.00 0.00 0.00 2.57
275 276 0.388006 CGCCGACCCAAAACCAAATC 60.388 55.000 0.00 0.00 0.00 2.17
276 277 1.663173 CGCCGACCCAAAACCAAAT 59.337 52.632 0.00 0.00 0.00 2.32
277 278 3.121019 CGCCGACCCAAAACCAAA 58.879 55.556 0.00 0.00 0.00 3.28
278 279 3.597728 GCGCCGACCCAAAACCAA 61.598 61.111 0.00 0.00 0.00 3.67
281 282 3.956317 AACGCGCCGACCCAAAAC 61.956 61.111 5.73 0.00 0.00 2.43
282 283 3.955101 CAACGCGCCGACCCAAAA 61.955 61.111 5.73 0.00 0.00 2.44
294 295 2.841160 AAAAGTGACGGCCCAACGC 61.841 57.895 0.00 0.00 37.37 4.84
295 296 1.008995 CAAAAGTGACGGCCCAACG 60.009 57.895 0.00 0.00 40.31 4.10
296 297 0.030235 GACAAAAGTGACGGCCCAAC 59.970 55.000 0.00 0.00 0.00 3.77
297 298 1.104577 GGACAAAAGTGACGGCCCAA 61.105 55.000 0.00 0.00 0.00 4.12
298 299 1.527380 GGACAAAAGTGACGGCCCA 60.527 57.895 0.00 0.00 0.00 5.36
299 300 0.893727 ATGGACAAAAGTGACGGCCC 60.894 55.000 0.00 0.00 0.00 5.80
300 301 1.467342 GTATGGACAAAAGTGACGGCC 59.533 52.381 0.00 0.00 0.00 6.13
301 302 1.467342 GGTATGGACAAAAGTGACGGC 59.533 52.381 0.00 0.00 0.00 5.68
302 303 1.730064 CGGTATGGACAAAAGTGACGG 59.270 52.381 0.00 0.00 0.00 4.79
303 304 2.410730 GTCGGTATGGACAAAAGTGACG 59.589 50.000 0.00 0.00 36.91 4.35
304 305 3.660865 AGTCGGTATGGACAAAAGTGAC 58.339 45.455 0.00 0.00 39.42 3.67
305 306 3.322541 TGAGTCGGTATGGACAAAAGTGA 59.677 43.478 0.00 0.00 39.42 3.41
306 307 3.659786 TGAGTCGGTATGGACAAAAGTG 58.340 45.455 0.00 0.00 39.42 3.16
307 308 4.345859 TTGAGTCGGTATGGACAAAAGT 57.654 40.909 0.00 0.00 39.42 2.66
308 309 4.377022 CGTTTGAGTCGGTATGGACAAAAG 60.377 45.833 0.00 0.00 39.42 2.27
309 310 3.495377 CGTTTGAGTCGGTATGGACAAAA 59.505 43.478 0.00 0.00 39.42 2.44
310 311 3.061322 CGTTTGAGTCGGTATGGACAAA 58.939 45.455 0.00 0.00 39.42 2.83
311 312 2.610976 CCGTTTGAGTCGGTATGGACAA 60.611 50.000 0.00 0.00 42.62 3.18
312 313 1.067425 CCGTTTGAGTCGGTATGGACA 60.067 52.381 0.00 0.00 42.62 4.02
313 314 1.203052 TCCGTTTGAGTCGGTATGGAC 59.797 52.381 4.36 0.00 46.86 4.02
314 315 1.475280 CTCCGTTTGAGTCGGTATGGA 59.525 52.381 4.36 0.00 46.86 3.41
315 316 1.470979 CCTCCGTTTGAGTCGGTATGG 60.471 57.143 4.36 2.80 46.86 2.74
316 317 1.203994 ACCTCCGTTTGAGTCGGTATG 59.796 52.381 4.36 0.00 46.86 2.39
317 318 1.475682 GACCTCCGTTTGAGTCGGTAT 59.524 52.381 4.36 0.00 46.86 2.73
318 319 0.883833 GACCTCCGTTTGAGTCGGTA 59.116 55.000 4.36 0.00 46.86 4.02
319 320 1.664306 GACCTCCGTTTGAGTCGGT 59.336 57.895 4.36 0.00 46.86 4.69
321 322 4.573162 GGACCTCCGTTTGAGTCG 57.427 61.111 0.00 0.00 39.65 4.18
331 332 1.146263 ATTTCATCCGCGGACCTCC 59.854 57.895 33.75 0.00 0.00 4.30
332 333 1.160329 CCATTTCATCCGCGGACCTC 61.160 60.000 33.75 0.00 0.00 3.85
333 334 1.153168 CCATTTCATCCGCGGACCT 60.153 57.895 33.75 13.97 0.00 3.85
334 335 0.535102 ATCCATTTCATCCGCGGACC 60.535 55.000 33.75 0.00 0.00 4.46
335 336 0.868406 GATCCATTTCATCCGCGGAC 59.132 55.000 33.75 9.96 0.00 4.79
336 337 0.599991 CGATCCATTTCATCCGCGGA 60.600 55.000 33.12 33.12 0.00 5.54
337 338 1.568612 CCGATCCATTTCATCCGCGG 61.569 60.000 22.12 22.12 0.00 6.46
338 339 0.880278 ACCGATCCATTTCATCCGCG 60.880 55.000 0.00 0.00 0.00 6.46
339 340 0.868406 GACCGATCCATTTCATCCGC 59.132 55.000 0.00 0.00 0.00 5.54
340 341 1.512926 GGACCGATCCATTTCATCCG 58.487 55.000 0.00 0.00 45.47 4.18
350 351 1.468914 GCAACTTCAAAGGACCGATCC 59.531 52.381 0.00 0.00 46.69 3.36
351 352 2.416893 GAGCAACTTCAAAGGACCGATC 59.583 50.000 0.00 0.00 0.00 3.69
352 353 2.039084 AGAGCAACTTCAAAGGACCGAT 59.961 45.455 0.00 0.00 0.00 4.18
353 354 1.416401 AGAGCAACTTCAAAGGACCGA 59.584 47.619 0.00 0.00 0.00 4.69
354 355 1.884235 AGAGCAACTTCAAAGGACCG 58.116 50.000 0.00 0.00 0.00 4.79
355 356 3.753797 CCTTAGAGCAACTTCAAAGGACC 59.246 47.826 0.00 0.00 35.16 4.46
356 357 4.452795 GTCCTTAGAGCAACTTCAAAGGAC 59.547 45.833 18.94 18.94 45.94 3.85
357 358 4.642429 GTCCTTAGAGCAACTTCAAAGGA 58.358 43.478 8.57 8.57 38.08 3.36
358 359 3.433615 CGTCCTTAGAGCAACTTCAAAGG 59.566 47.826 0.00 0.00 34.74 3.11
359 360 3.433615 CCGTCCTTAGAGCAACTTCAAAG 59.566 47.826 0.00 0.00 0.00 2.77
360 361 3.070446 TCCGTCCTTAGAGCAACTTCAAA 59.930 43.478 0.00 0.00 0.00 2.69
361 362 2.631062 TCCGTCCTTAGAGCAACTTCAA 59.369 45.455 0.00 0.00 0.00 2.69
362 363 2.231478 CTCCGTCCTTAGAGCAACTTCA 59.769 50.000 0.00 0.00 0.00 3.02
363 364 2.417515 CCTCCGTCCTTAGAGCAACTTC 60.418 54.545 0.00 0.00 0.00 3.01
364 365 1.550976 CCTCCGTCCTTAGAGCAACTT 59.449 52.381 0.00 0.00 0.00 2.66
381 382 0.259938 ATTTCACATGGCCCTCCCTC 59.740 55.000 0.00 0.00 0.00 4.30
383 384 1.064017 TGTATTTCACATGGCCCTCCC 60.064 52.381 0.00 0.00 30.04 4.30
390 391 3.198068 CGTCTCCCTGTATTTCACATGG 58.802 50.000 0.00 0.00 42.63 3.66
463 465 2.287909 TGGCGCAACATAAACAAACTCC 60.288 45.455 10.83 0.00 0.00 3.85
635 657 7.201741 GGGATATTTACTTGAGTTTCCTTGCTC 60.202 40.741 0.00 0.00 0.00 4.26
638 660 6.821665 TCGGGATATTTACTTGAGTTTCCTTG 59.178 38.462 0.00 0.00 0.00 3.61
696 720 1.364171 CGATTAGACGGAGGCCAGG 59.636 63.158 5.01 0.00 0.00 4.45
697 721 0.030908 GACGATTAGACGGAGGCCAG 59.969 60.000 5.01 0.00 37.61 4.85
755 779 1.038130 CGGTAGGGGTGGTCTCTCTG 61.038 65.000 0.00 0.00 0.00 3.35
781 824 0.036388 GGTTGATTGACTGGCGAGGA 60.036 55.000 0.00 0.00 0.00 3.71
784 827 1.678728 GGATGGTTGATTGACTGGCGA 60.679 52.381 0.00 0.00 0.00 5.54
812 855 4.980702 TGGTTGGCTGGCTGGCTG 62.981 66.667 18.27 2.91 42.34 4.85
813 856 3.534704 ATTGGTTGGCTGGCTGGCT 62.535 57.895 18.27 0.00 42.34 4.75
814 857 2.999063 ATTGGTTGGCTGGCTGGC 60.999 61.111 11.09 11.09 42.18 4.85
865 917 2.218953 TCCATTAATCCACGCGAGAC 57.781 50.000 15.93 0.00 0.00 3.36
907 959 1.149101 AGCTAGAGGGAGAGGGAGAG 58.851 60.000 0.00 0.00 0.00 3.20
908 960 0.850100 CAGCTAGAGGGAGAGGGAGA 59.150 60.000 0.00 0.00 0.00 3.71
909 961 0.827507 GCAGCTAGAGGGAGAGGGAG 60.828 65.000 0.00 0.00 0.00 4.30
910 962 1.231641 GCAGCTAGAGGGAGAGGGA 59.768 63.158 0.00 0.00 0.00 4.20
911 963 1.114722 CAGCAGCTAGAGGGAGAGGG 61.115 65.000 0.00 0.00 0.00 4.30
913 965 1.741525 GCAGCAGCTAGAGGGAGAG 59.258 63.158 0.00 0.00 37.91 3.20
914 966 1.760086 GGCAGCAGCTAGAGGGAGA 60.760 63.158 0.00 0.00 41.70 3.71
915 967 2.820973 GGCAGCAGCTAGAGGGAG 59.179 66.667 0.00 0.00 41.70 4.30
917 969 4.906792 GCGGCAGCAGCTAGAGGG 62.907 72.222 10.66 0.00 44.35 4.30
1033 1095 4.845580 CGCCAGGCCGAGAAGCAT 62.846 66.667 5.63 0.00 0.00 3.79
1113 1190 2.764547 CGGGGAGGAAGGGAGTCC 60.765 72.222 0.00 0.00 38.03 3.85
1115 1192 1.595058 ATCTCGGGGAGGAAGGGAGT 61.595 60.000 0.00 0.00 0.00 3.85
1118 1195 1.411651 GGAATCTCGGGGAGGAAGGG 61.412 65.000 0.00 0.00 0.00 3.95
1122 1199 2.838225 GCGGAATCTCGGGGAGGA 60.838 66.667 0.00 0.00 0.00 3.71
1145 1223 2.039084 ACTGCCAAGGAGAGTAAACAGG 59.961 50.000 0.00 0.00 0.00 4.00
1146 1224 3.409026 ACTGCCAAGGAGAGTAAACAG 57.591 47.619 0.00 0.00 0.00 3.16
1148 1226 2.814336 CCAACTGCCAAGGAGAGTAAAC 59.186 50.000 0.00 0.00 0.00 2.01
1149 1227 2.224769 CCCAACTGCCAAGGAGAGTAAA 60.225 50.000 0.00 0.00 0.00 2.01
1150 1228 1.351017 CCCAACTGCCAAGGAGAGTAA 59.649 52.381 0.00 0.00 0.00 2.24
1151 1229 0.984230 CCCAACTGCCAAGGAGAGTA 59.016 55.000 0.00 0.00 0.00 2.59
1152 1230 1.763770 CCCAACTGCCAAGGAGAGT 59.236 57.895 0.00 0.00 0.00 3.24
1153 1231 1.001641 CCCCAACTGCCAAGGAGAG 60.002 63.158 0.00 0.00 0.00 3.20
1154 1232 2.538141 CCCCCAACTGCCAAGGAGA 61.538 63.158 0.00 0.00 0.00 3.71
1183 1261 1.891919 GGCACACGCAACTCAAGGA 60.892 57.895 0.00 0.00 41.24 3.36
1189 1267 2.124320 ACCAAGGCACACGCAACT 60.124 55.556 0.00 0.00 41.24 3.16
1192 1270 2.186160 CAAGACCAAGGCACACGCA 61.186 57.895 0.00 0.00 41.24 5.24
1193 1271 2.639286 CAAGACCAAGGCACACGC 59.361 61.111 0.00 0.00 37.44 5.34
1194 1272 2.639286 GCAAGACCAAGGCACACG 59.361 61.111 0.00 0.00 0.00 4.49
1195 1273 2.564721 GGGCAAGACCAAGGCACAC 61.565 63.158 0.00 0.00 42.05 3.82
1196 1274 2.203480 GGGCAAGACCAAGGCACA 60.203 61.111 0.00 0.00 42.05 4.57
1197 1275 3.365265 CGGGCAAGACCAAGGCAC 61.365 66.667 0.00 0.00 42.05 5.01
1201 1279 0.671781 CAGAGACGGGCAAGACCAAG 60.672 60.000 0.00 0.00 42.05 3.61
1202 1280 1.118965 TCAGAGACGGGCAAGACCAA 61.119 55.000 0.00 0.00 42.05 3.67
1203 1281 0.904865 ATCAGAGACGGGCAAGACCA 60.905 55.000 0.00 0.00 42.05 4.02
1205 1283 1.086634 GCATCAGAGACGGGCAAGAC 61.087 60.000 0.00 0.00 0.00 3.01
1206 1284 1.219124 GCATCAGAGACGGGCAAGA 59.781 57.895 0.00 0.00 0.00 3.02
1207 1285 1.817099 GGCATCAGAGACGGGCAAG 60.817 63.158 0.00 0.00 0.00 4.01
1208 1286 2.268920 GGCATCAGAGACGGGCAA 59.731 61.111 0.00 0.00 0.00 4.52
1209 1287 4.147449 CGGCATCAGAGACGGGCA 62.147 66.667 0.00 0.00 0.00 5.36
1210 1288 2.650813 AATCGGCATCAGAGACGGGC 62.651 60.000 0.00 0.00 0.00 6.13
1236 1314 2.805353 CGGCGAGACTGTTCCACG 60.805 66.667 0.00 0.00 0.00 4.94
1290 1368 1.079266 AGCAGCAAGAAGGCGAGAG 60.079 57.895 0.00 0.00 39.27 3.20
1291 1369 1.375140 CAGCAGCAAGAAGGCGAGA 60.375 57.895 0.00 0.00 39.27 4.04
1292 1370 3.036783 GCAGCAGCAAGAAGGCGAG 62.037 63.158 0.00 0.00 41.58 5.03
1293 1371 3.052082 GCAGCAGCAAGAAGGCGA 61.052 61.111 0.00 0.00 41.58 5.54
1294 1372 3.054503 AGCAGCAGCAAGAAGGCG 61.055 61.111 3.17 0.00 45.49 5.52
1295 1373 2.567049 CAGCAGCAGCAAGAAGGC 59.433 61.111 3.17 0.00 45.49 4.35
1296 1374 1.972223 AGCAGCAGCAGCAAGAAGG 60.972 57.895 12.92 0.00 45.49 3.46
1297 1375 1.210413 CAGCAGCAGCAGCAAGAAG 59.790 57.895 12.92 0.00 45.49 2.85
1298 1376 3.351450 CAGCAGCAGCAGCAAGAA 58.649 55.556 12.92 0.00 45.49 2.52
1307 1385 1.437772 GATGGTAGCAGCAGCAGCAG 61.438 60.000 12.92 0.00 45.49 4.24
1308 1386 1.450848 GATGGTAGCAGCAGCAGCA 60.451 57.895 12.92 5.91 45.49 4.41
1309 1387 0.747283 AAGATGGTAGCAGCAGCAGC 60.747 55.000 13.30 0.46 45.49 5.25
1310 1388 1.134461 AGAAGATGGTAGCAGCAGCAG 60.134 52.381 13.30 0.00 45.49 4.24
1311 1389 0.907486 AGAAGATGGTAGCAGCAGCA 59.093 50.000 13.30 0.00 45.49 4.41
1312 1390 2.478831 GTAGAAGATGGTAGCAGCAGC 58.521 52.381 13.30 3.63 42.56 5.25
1313 1391 2.432146 TGGTAGAAGATGGTAGCAGCAG 59.568 50.000 13.30 0.00 0.00 4.24
1314 1392 2.168521 GTGGTAGAAGATGGTAGCAGCA 59.831 50.000 13.30 0.00 0.00 4.41
1315 1393 2.168521 TGTGGTAGAAGATGGTAGCAGC 59.831 50.000 0.98 0.98 0.00 5.25
1316 1394 4.375272 CATGTGGTAGAAGATGGTAGCAG 58.625 47.826 0.00 0.00 0.00 4.24
1317 1395 3.432186 GCATGTGGTAGAAGATGGTAGCA 60.432 47.826 0.00 0.00 0.00 3.49
1318 1396 3.134458 GCATGTGGTAGAAGATGGTAGC 58.866 50.000 0.00 0.00 0.00 3.58
1319 1397 4.375272 CAGCATGTGGTAGAAGATGGTAG 58.625 47.826 0.00 0.00 31.12 3.18
1320 1398 4.406648 CAGCATGTGGTAGAAGATGGTA 57.593 45.455 0.00 0.00 31.12 3.25
1383 1462 1.072331 CCCAGAAACCACAGTAGTGCT 59.928 52.381 0.00 0.00 44.53 4.40
1384 1463 1.523758 CCCAGAAACCACAGTAGTGC 58.476 55.000 0.00 0.00 44.53 4.40
1385 1464 1.697432 TCCCCAGAAACCACAGTAGTG 59.303 52.381 0.00 0.00 45.47 2.74
1437 1523 1.055040 CTTCCCATCCCAGCTCTAGG 58.945 60.000 0.00 0.00 0.00 3.02
1438 1524 2.094100 TCTTCCCATCCCAGCTCTAG 57.906 55.000 0.00 0.00 0.00 2.43
1439 1525 2.803285 ATCTTCCCATCCCAGCTCTA 57.197 50.000 0.00 0.00 0.00 2.43
1440 1526 1.904440 AATCTTCCCATCCCAGCTCT 58.096 50.000 0.00 0.00 0.00 4.09
1441 1527 2.305009 CAAATCTTCCCATCCCAGCTC 58.695 52.381 0.00 0.00 0.00 4.09
1442 1528 1.687368 GCAAATCTTCCCATCCCAGCT 60.687 52.381 0.00 0.00 0.00 4.24
1443 1529 0.749049 GCAAATCTTCCCATCCCAGC 59.251 55.000 0.00 0.00 0.00 4.85
1444 1530 1.406903 GGCAAATCTTCCCATCCCAG 58.593 55.000 0.00 0.00 0.00 4.45
1445 1531 0.032217 GGGCAAATCTTCCCATCCCA 60.032 55.000 0.00 0.00 42.18 4.37
1446 1532 1.109323 CGGGCAAATCTTCCCATCCC 61.109 60.000 0.00 0.00 42.75 3.85
1447 1533 1.738346 GCGGGCAAATCTTCCCATCC 61.738 60.000 0.00 0.00 42.75 3.51
1448 1534 1.037030 TGCGGGCAAATCTTCCCATC 61.037 55.000 0.00 0.00 42.75 3.51
1449 1535 1.000233 TGCGGGCAAATCTTCCCAT 60.000 52.632 0.00 0.00 42.75 4.00
1456 1542 1.081242 CACACAGTGCGGGCAAATC 60.081 57.895 0.00 0.00 0.00 2.17
1474 1560 4.452733 CGGACGGAGGGAAGTGGC 62.453 72.222 0.00 0.00 0.00 5.01
1476 1562 2.580601 AACCGGACGGAGGGAAGTG 61.581 63.158 18.80 0.00 38.96 3.16
1481 1837 2.669777 AAACACAACCGGACGGAGGG 62.670 60.000 18.80 12.68 38.96 4.30
1498 1854 7.978975 GCTGAAATTACTATATTGTTGGGCAAA 59.021 33.333 0.00 0.00 40.91 3.68
1499 1855 7.488322 GCTGAAATTACTATATTGTTGGGCAA 58.512 34.615 0.00 0.00 41.89 4.52
1500 1856 6.238621 CGCTGAAATTACTATATTGTTGGGCA 60.239 38.462 0.00 0.00 0.00 5.36
1501 1857 6.017440 TCGCTGAAATTACTATATTGTTGGGC 60.017 38.462 0.00 0.00 0.00 5.36
1502 1858 7.011950 TGTCGCTGAAATTACTATATTGTTGGG 59.988 37.037 0.00 0.00 0.00 4.12
1512 1868 7.279981 AGCAAACATATGTCGCTGAAATTACTA 59.720 33.333 24.43 0.00 0.00 1.82
1513 1869 6.094048 AGCAAACATATGTCGCTGAAATTACT 59.906 34.615 24.43 5.93 0.00 2.24
1514 1870 6.258160 AGCAAACATATGTCGCTGAAATTAC 58.742 36.000 24.43 4.01 0.00 1.89
1515 1871 6.435430 AGCAAACATATGTCGCTGAAATTA 57.565 33.333 24.43 0.00 0.00 1.40
1516 1872 5.314923 AGCAAACATATGTCGCTGAAATT 57.685 34.783 24.43 5.79 0.00 1.82
1562 1947 1.593209 GGACGCACTGAACCGACAA 60.593 57.895 0.00 0.00 0.00 3.18
1576 1961 1.705727 GCGAACCATAACACGGACG 59.294 57.895 0.00 0.00 0.00 4.79
1612 2002 4.494484 TGGTGATGTTAACACGAGATCTG 58.506 43.478 11.22 0.00 38.90 2.90
1630 2025 0.251297 TTCCAGGTCCAATGCTGGTG 60.251 55.000 0.00 0.00 43.97 4.17
1659 2054 2.426024 CAAGCATCCAATGGAGAGTTGG 59.574 50.000 8.40 0.00 45.94 3.77
1660 2055 3.349927 TCAAGCATCCAATGGAGAGTTG 58.650 45.455 8.40 10.53 34.05 3.16
1690 2139 9.861138 GAAATTCTGAATATGACTGAATTCGAG 57.139 33.333 18.60 2.47 41.43 4.04
1702 2151 9.443283 GTTCCTGAATTCGAAATTCTGAATATG 57.557 33.333 19.13 0.00 33.85 1.78
1717 2166 5.106712 TGTCGTTGCTAATGTTCCTGAATTC 60.107 40.000 0.00 0.00 0.00 2.17
1748 2209 7.066284 GGTATGAAAAGACGGTACAGAGTAGTA 59.934 40.741 0.00 0.00 0.00 1.82
1772 2239 2.292828 AAGCCAAATACAGCAGTGGT 57.707 45.000 0.00 0.00 33.43 4.16
1778 2245 6.973843 TCATCATCATAAAGCCAAATACAGC 58.026 36.000 0.00 0.00 0.00 4.40
1793 2260 3.121738 TCAGCGCATCTTCATCATCAT 57.878 42.857 11.47 0.00 0.00 2.45
1794 2261 2.607631 TCAGCGCATCTTCATCATCA 57.392 45.000 11.47 0.00 0.00 3.07
1795 2262 4.213694 AGAAATCAGCGCATCTTCATCATC 59.786 41.667 11.47 0.00 0.00 2.92
1796 2263 4.135306 AGAAATCAGCGCATCTTCATCAT 58.865 39.130 11.47 0.00 0.00 2.45
1797 2264 3.538591 AGAAATCAGCGCATCTTCATCA 58.461 40.909 11.47 0.00 0.00 3.07
1798 2265 4.525686 GAAGAAATCAGCGCATCTTCATC 58.474 43.478 23.06 13.96 44.49 2.92
1817 2290 4.154918 GGCCAAGTCTCAAACTGTATGAAG 59.845 45.833 0.00 0.00 38.58 3.02
1833 2319 2.133641 GGTTGGTTGCTGGCCAAGT 61.134 57.895 7.01 0.00 45.50 3.16
1834 2320 2.091102 CTGGTTGGTTGCTGGCCAAG 62.091 60.000 7.01 1.85 45.50 3.61
1835 2321 2.042537 TGGTTGGTTGCTGGCCAA 60.043 55.556 7.01 0.00 43.04 4.52
1836 2322 2.521465 CTGGTTGGTTGCTGGCCA 60.521 61.111 4.71 4.71 0.00 5.36
1837 2323 3.994853 GCTGGTTGGTTGCTGGCC 61.995 66.667 0.00 0.00 0.00 5.36
1838 2324 2.496828 GATGCTGGTTGGTTGCTGGC 62.497 60.000 0.00 0.00 0.00 4.85
1857 2343 8.398665 GCAAGGAAAACATGAGTAATTACTAGG 58.601 37.037 18.03 12.39 36.50 3.02
1864 2350 5.705609 AACGCAAGGAAAACATGAGTAAT 57.294 34.783 0.00 0.00 46.39 1.89
1983 2469 1.695893 CGTACCATGCCTTGTCAGCG 61.696 60.000 0.00 0.00 0.00 5.18
2022 2508 1.059913 AGTTCCACTCCTTCCACTGG 58.940 55.000 0.00 0.00 0.00 4.00
2175 2661 8.764524 ACTGATGAAGACATAAAGACTAACAC 57.235 34.615 0.00 0.00 36.82 3.32
2414 2905 3.434319 ATGGCCAAGAGCGCGTTG 61.434 61.111 10.96 16.12 45.17 4.10
2600 3092 3.561313 GCCAAGATGAGGGAGTAACCAAA 60.561 47.826 0.00 0.00 41.20 3.28
2849 3341 0.771127 AAGGTTAGGACAGCCAAGCA 59.229 50.000 0.00 0.00 36.29 3.91
2930 3424 1.200760 TAGCAGCCCACACTGTCCAT 61.201 55.000 0.00 0.00 39.96 3.41
2996 3490 3.627492 CCAGGTATAGTGAGAGGACACCA 60.627 52.174 0.00 0.00 41.12 4.17
3023 3517 2.501128 CGCGGAGGGACATCATGT 59.499 61.111 0.00 0.00 46.37 3.21
3149 3643 5.352569 AGCCTGTTATCGTTTCTTCTTCATG 59.647 40.000 0.00 0.00 0.00 3.07
3363 3863 6.279882 ACACACTCAATTGGTTTGTAAATGG 58.720 36.000 13.69 3.78 36.65 3.16
3373 3873 3.328931 AGAGATGGACACACTCAATTGGT 59.671 43.478 5.42 0.00 33.69 3.67
3385 3893 3.701205 TGCAGCTAAAAGAGATGGACA 57.299 42.857 0.00 0.00 42.15 4.02
3388 3896 2.681848 CCAGTGCAGCTAAAAGAGATGG 59.318 50.000 0.00 0.00 42.15 3.51
3434 3952 5.012046 AGCATAAGATCATGTTCCGGTATCA 59.988 40.000 0.00 0.00 0.00 2.15
3442 3960 7.533426 AGACACAAAAGCATAAGATCATGTTC 58.467 34.615 0.00 0.00 0.00 3.18
3464 3982 8.778358 GGTACCATCTCATAATCAATCAAAGAC 58.222 37.037 7.15 0.00 0.00 3.01
3465 3983 8.908786 GGTACCATCTCATAATCAATCAAAGA 57.091 34.615 7.15 0.00 0.00 2.52
3490 4008 1.918800 AGTCCAGGGAACGAAGGGG 60.919 63.158 0.00 0.00 0.00 4.79
3495 4013 0.535335 GTATGCAGTCCAGGGAACGA 59.465 55.000 0.00 0.00 0.00 3.85
3501 4019 1.089920 GTGCTTGTATGCAGTCCAGG 58.910 55.000 0.00 0.00 44.20 4.45
3888 4766 1.555533 AGTGCTAAGCCTAACCAGTCC 59.444 52.381 0.00 0.00 0.00 3.85
3966 4844 0.107165 GGATTTTGGGACGGAGGGAG 60.107 60.000 0.00 0.00 0.00 4.30
3967 4845 0.549169 AGGATTTTGGGACGGAGGGA 60.549 55.000 0.00 0.00 0.00 4.20
3968 4846 0.331616 AAGGATTTTGGGACGGAGGG 59.668 55.000 0.00 0.00 0.00 4.30
3969 4847 1.271926 ACAAGGATTTTGGGACGGAGG 60.272 52.381 0.00 0.00 0.00 4.30
3970 4848 2.084546 GACAAGGATTTTGGGACGGAG 58.915 52.381 0.00 0.00 0.00 4.63
3971 4849 1.702957 AGACAAGGATTTTGGGACGGA 59.297 47.619 0.00 0.00 0.00 4.69
3972 4850 2.200373 AGACAAGGATTTTGGGACGG 57.800 50.000 0.00 0.00 0.00 4.79
3973 4851 4.575885 TCTAAGACAAGGATTTTGGGACG 58.424 43.478 0.00 0.00 0.00 4.79
3974 4852 7.039714 ACAAATCTAAGACAAGGATTTTGGGAC 60.040 37.037 0.00 0.00 37.51 4.46
3975 4853 7.010160 ACAAATCTAAGACAAGGATTTTGGGA 58.990 34.615 0.00 0.00 37.51 4.37
3976 4854 7.177392 AGACAAATCTAAGACAAGGATTTTGGG 59.823 37.037 0.00 0.00 37.51 4.12
3977 4855 8.115490 AGACAAATCTAAGACAAGGATTTTGG 57.885 34.615 0.00 0.00 37.51 3.28
3983 4861 9.582431 CGTATTTAGACAAATCTAAGACAAGGA 57.418 33.333 9.81 0.00 45.93 3.36
3984 4862 8.818057 CCGTATTTAGACAAATCTAAGACAAGG 58.182 37.037 9.81 4.16 45.93 3.61
3985 4863 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
3987 4865 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
3988 4866 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
3995 4873 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
3996 4874 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
3997 4875 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
3998 4876 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
3999 4877 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
4000 4878 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
4001 4879 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
4002 4880 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
4003 4881 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
4004 4882 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
4005 4883 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
4006 4884 4.156373 TCAACGTGACTTGATACATCCGTA 59.844 41.667 0.00 0.00 0.00 4.02
4007 4885 3.057104 TCAACGTGACTTGATACATCCGT 60.057 43.478 0.00 0.00 0.00 4.69
4008 4886 3.303495 GTCAACGTGACTTGATACATCCG 59.697 47.826 9.86 0.00 43.73 4.18
4009 4887 4.842139 GTCAACGTGACTTGATACATCC 57.158 45.455 9.86 0.00 43.73 3.51
4021 4899 3.948473 TCCCAAAATTCTTGTCAACGTGA 59.052 39.130 0.00 0.00 0.00 4.35
4022 4900 4.041723 GTCCCAAAATTCTTGTCAACGTG 58.958 43.478 0.00 0.00 0.00 4.49
4023 4901 3.242936 CGTCCCAAAATTCTTGTCAACGT 60.243 43.478 0.00 0.00 0.00 3.99
4024 4902 3.296628 CGTCCCAAAATTCTTGTCAACG 58.703 45.455 0.00 0.00 0.00 4.10
4025 4903 3.316868 TCCGTCCCAAAATTCTTGTCAAC 59.683 43.478 0.00 0.00 0.00 3.18
4026 4904 3.556999 TCCGTCCCAAAATTCTTGTCAA 58.443 40.909 0.00 0.00 0.00 3.18
4027 4905 3.146066 CTCCGTCCCAAAATTCTTGTCA 58.854 45.455 0.00 0.00 0.00 3.58
4028 4906 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
4029 4907 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
4030 4908 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
4031 4909 1.272480 CCCCTCCGTCCCAAAATTCTT 60.272 52.381 0.00 0.00 0.00 2.52
4032 4910 0.331616 CCCCTCCGTCCCAAAATTCT 59.668 55.000 0.00 0.00 0.00 2.40
4033 4911 0.683179 CCCCCTCCGTCCCAAAATTC 60.683 60.000 0.00 0.00 0.00 2.17
4034 4912 1.386550 CCCCCTCCGTCCCAAAATT 59.613 57.895 0.00 0.00 0.00 1.82
4035 4913 3.096357 CCCCCTCCGTCCCAAAAT 58.904 61.111 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.