Multiple sequence alignment - TraesCS5A01G521700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G521700 chr5A 100.000 5729 0 0 947 6675 682927110 682932838 0.000000e+00 10580.0
1 TraesCS5A01G521700 chr5A 87.625 1099 65 32 1172 2230 608640863 608639796 0.000000e+00 1210.0
2 TraesCS5A01G521700 chr5A 100.000 458 0 0 1 458 682926164 682926621 0.000000e+00 846.0
3 TraesCS5A01G521700 chr5A 85.246 671 78 11 3911 4567 682928929 682929592 0.000000e+00 671.0
4 TraesCS5A01G521700 chr5A 85.246 671 78 11 2766 3429 682930074 682930730 0.000000e+00 671.0
5 TraesCS5A01G521700 chr5A 90.789 76 7 0 2309 2384 608639765 608639690 1.180000e-17 102.0
6 TraesCS5A01G521700 chr5A 85.567 97 9 3 5961 6056 569558627 569558535 5.510000e-16 97.1
7 TraesCS5A01G521700 chr4D 92.268 3453 174 41 2557 5967 501323545 501320144 0.000000e+00 4811.0
8 TraesCS5A01G521700 chr4D 86.399 1147 120 20 3431 4567 501323783 501322663 0.000000e+00 1221.0
9 TraesCS5A01G521700 chr4D 83.735 1371 105 56 948 2230 501325624 501324284 0.000000e+00 1188.0
10 TraesCS5A01G521700 chr4D 86.697 669 73 9 2766 3429 501322205 501321548 0.000000e+00 728.0
11 TraesCS5A01G521700 chr4D 87.129 303 16 8 6238 6517 501319680 501319378 8.350000e-84 322.0
12 TraesCS5A01G521700 chr4D 80.260 461 43 28 1 458 501326559 501326144 3.020000e-78 303.0
13 TraesCS5A01G521700 chr4D 92.818 181 12 1 2370 2550 82733536 82733715 1.850000e-65 261.0
14 TraesCS5A01G521700 chr4D 86.592 179 17 5 3431 3607 501324319 501324146 2.460000e-44 191.0
15 TraesCS5A01G521700 chr4D 98.969 97 1 0 6055 6151 501320146 501320050 2.470000e-39 174.0
16 TraesCS5A01G521700 chr4D 82.659 173 10 6 6520 6675 501319346 501319177 1.170000e-27 135.0
17 TraesCS5A01G521700 chr4D 89.247 93 7 2 5970 6059 71380919 71381011 5.470000e-21 113.0
18 TraesCS5A01G521700 chr4B 90.993 3464 179 62 2557 5967 645303418 645300035 0.000000e+00 4545.0
19 TraesCS5A01G521700 chr4B 85.466 1149 119 22 3435 4573 645303654 645302544 0.000000e+00 1153.0
20 TraesCS5A01G521700 chr4B 87.929 903 62 22 1034 1915 645304751 645303875 0.000000e+00 1020.0
21 TraesCS5A01G521700 chr4B 83.333 678 83 16 2766 3429 645302111 645301450 3.440000e-167 599.0
22 TraesCS5A01G521700 chr4B 84.599 461 32 19 1 458 645305706 645305282 8.000000e-114 422.0
23 TraesCS5A01G521700 chr4B 92.653 245 16 2 6223 6466 645299776 645299533 1.070000e-92 351.0
24 TraesCS5A01G521700 chr4B 93.377 151 10 0 6055 6205 645300037 645299887 2.420000e-54 224.0
25 TraesCS5A01G521700 chr4B 100.000 53 0 0 6465 6517 645299496 645299444 1.530000e-16 99.0
26 TraesCS5A01G521700 chr2A 85.998 1107 72 26 1172 2230 594174289 594175360 0.000000e+00 1109.0
27 TraesCS5A01G521700 chr2A 89.873 79 8 0 2306 2384 594175388 594175466 1.180000e-17 102.0
28 TraesCS5A01G521700 chr7A 87.283 920 71 24 1175 2077 45330435 45329545 0.000000e+00 1009.0
29 TraesCS5A01G521700 chr7A 88.991 763 47 14 1174 1908 622259892 622259139 0.000000e+00 909.0
30 TraesCS5A01G521700 chr7A 89.860 286 11 7 1962 2230 622259133 622258849 1.070000e-92 351.0
31 TraesCS5A01G521700 chr6A 88.448 857 49 24 1393 2230 137905908 137906733 0.000000e+00 989.0
32 TraesCS5A01G521700 chr6A 92.647 204 12 2 1100 1300 48104029 48104232 2.350000e-74 291.0
33 TraesCS5A01G521700 chr6A 86.555 238 26 4 6224 6458 398098601 398098835 2.390000e-64 257.0
34 TraesCS5A01G521700 chr6A 86.076 237 28 3 6224 6458 302778712 302778945 4.000000e-62 250.0
35 TraesCS5A01G521700 chr6A 87.342 79 10 0 2306 2384 137906761 137906839 2.560000e-14 91.6
36 TraesCS5A01G521700 chr6B 94.764 191 10 0 1110 1300 84611209 84611399 1.410000e-76 298.0
37 TraesCS5A01G521700 chr6B 85.830 247 28 6 6224 6467 9103035 9102793 8.590000e-64 255.0
38 TraesCS5A01G521700 chr6B 97.183 71 2 0 5993 6063 121796972 121797042 3.270000e-23 121.0
39 TraesCS5A01G521700 chrUn 92.754 207 12 3 1100 1303 153369067 153368861 5.060000e-76 296.0
40 TraesCS5A01G521700 chrUn 96.364 165 6 0 2383 2547 71399526 71399690 8.530000e-69 272.0
41 TraesCS5A01G521700 chr5D 97.590 166 4 0 2382 2547 60139910 60139745 1.100000e-72 285.0
42 TraesCS5A01G521700 chr5D 87.719 114 9 4 5949 6059 464686615 464686726 1.950000e-25 128.0
43 TraesCS5A01G521700 chr3B 96.988 166 5 0 2382 2547 190901963 190902128 5.100000e-71 279.0
44 TraesCS5A01G521700 chr3D 95.402 174 8 0 2378 2551 396430336 396430163 1.830000e-70 278.0
45 TraesCS5A01G521700 chr3D 88.421 95 4 5 5970 6057 570266729 570266823 2.550000e-19 108.0
46 TraesCS5A01G521700 chr2D 95.906 171 6 1 2382 2551 595489269 595489439 6.590000e-70 276.0
47 TraesCS5A01G521700 chr2D 94.253 174 10 0 2378 2551 288620643 288620470 3.970000e-67 267.0
48 TraesCS5A01G521700 chr3A 96.386 166 6 0 2382 2547 40915055 40914890 2.370000e-69 274.0
49 TraesCS5A01G521700 chr3A 86.555 238 25 5 6224 6458 733185682 733185449 8.590000e-64 255.0
50 TraesCS5A01G521700 chr3A 85.246 244 30 5 6226 6466 714773563 714773323 5.170000e-61 246.0
51 TraesCS5A01G521700 chr1D 94.675 169 9 0 2383 2551 128530637 128530469 5.130000e-66 263.0
52 TraesCS5A01G521700 chr1A 85.772 246 27 7 6226 6466 117215404 117215162 3.090000e-63 254.0
53 TraesCS5A01G521700 chr1A 86.192 239 28 3 6223 6458 532736829 532737065 3.090000e-63 254.0
54 TraesCS5A01G521700 chr5B 86.192 239 25 6 6224 6458 534012391 534012157 1.110000e-62 252.0
55 TraesCS5A01G521700 chr5B 100.000 29 0 0 5964 5992 17980573 17980601 3.000000e-03 54.7
56 TraesCS5A01G521700 chr2B 92.222 90 4 3 5970 6056 129659771 129659860 2.530000e-24 124.0
57 TraesCS5A01G521700 chr1B 98.529 68 1 0 5993 6060 623732048 623732115 3.270000e-23 121.0
58 TraesCS5A01G521700 chr7B 97.183 71 1 1 5993 6063 714743672 714743603 1.180000e-22 119.0
59 TraesCS5A01G521700 chr7D 90.426 94 2 2 5963 6056 610810989 610810903 4.230000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G521700 chr5A 682926164 682932838 6674 False 3192.000000 10580 92.623000 1 6675 4 chr5A.!!$F1 6674
1 TraesCS5A01G521700 chr5A 608639690 608640863 1173 True 656.000000 1210 89.207000 1172 2384 2 chr5A.!!$R2 1212
2 TraesCS5A01G521700 chr4D 501319177 501326559 7382 True 1008.111111 4811 87.189778 1 6675 9 chr4D.!!$R1 6674
3 TraesCS5A01G521700 chr4B 645299444 645305706 6262 True 1051.625000 4545 89.793750 1 6517 8 chr4B.!!$R1 6516
4 TraesCS5A01G521700 chr2A 594174289 594175466 1177 False 605.500000 1109 87.935500 1172 2384 2 chr2A.!!$F1 1212
5 TraesCS5A01G521700 chr7A 45329545 45330435 890 True 1009.000000 1009 87.283000 1175 2077 1 chr7A.!!$R1 902
6 TraesCS5A01G521700 chr7A 622258849 622259892 1043 True 630.000000 909 89.425500 1174 2230 2 chr7A.!!$R2 1056
7 TraesCS5A01G521700 chr6A 137905908 137906839 931 False 540.300000 989 87.895000 1393 2384 2 chr6A.!!$F4 991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 424 1.002366 ACAGCAGATAAAAGCGAGCG 58.998 50.0 0.00 0.00 35.48 5.03 F
1329 1401 0.106217 CTCTCCTCCTCCTCCTCACC 60.106 65.0 0.00 0.00 0.00 4.02 F
2395 3225 0.108281 GGCTTGTACTCCCTCCGTTC 60.108 60.0 0.00 0.00 0.00 3.95 F
3452 4308 0.447801 CCCTTGTCTGTATTGCGTGC 59.552 55.0 0.00 0.00 0.00 5.34 F
3973 4829 0.315568 CTGCGATGGGCTCTAGTACC 59.684 60.0 0.00 0.00 44.05 3.34 F
3974 4830 0.396556 TGCGATGGGCTCTAGTACCA 60.397 55.0 5.52 5.52 44.05 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2377 3207 0.108281 GGAACGGAGGGAGTACAAGC 60.108 60.000 0.00 0.0 0.00 4.01 R
2640 3471 1.065272 GGTGGGCCCAGTTTATAACGA 60.065 52.381 29.55 0.0 36.23 3.85 R
3949 4805 0.185175 TAGAGCCCATCGCAGTCCTA 59.815 55.000 0.00 0.0 41.38 2.94 R
5445 6326 0.322008 GGTTGCAAGGTCCTGGAGAG 60.322 60.000 0.00 0.0 0.00 3.20 R
5668 6554 0.251354 CCACATAGCCAGCTCACTGT 59.749 55.000 0.00 0.0 42.81 3.55 R
5968 6859 0.331616 AGAATTTTGGGACGGAGGGG 59.668 55.000 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 1.335810 CACGCCATGATAATGCAAGCT 59.664 47.619 0.00 0.00 0.00 3.74
75 76 2.346847 GCAAGCTAGAAGACGTGACATG 59.653 50.000 0.00 0.00 0.00 3.21
78 79 2.159503 AGCTAGAAGACGTGACATGTCG 60.160 50.000 20.54 12.98 39.07 4.35
111 114 2.167281 GCAGATGGTAGCACAAGAGAGA 59.833 50.000 0.00 0.00 0.00 3.10
172 177 4.903638 ACACGATAAACAACGACATCAG 57.096 40.909 0.00 0.00 0.00 2.90
190 195 1.152881 GGGCTCAGATTCCGCCAAT 60.153 57.895 10.29 0.00 45.53 3.16
276 281 5.299949 CAATCCAACAAAAAGAAGGGGAAG 58.700 41.667 0.00 0.00 0.00 3.46
277 282 4.258457 TCCAACAAAAAGAAGGGGAAGA 57.742 40.909 0.00 0.00 0.00 2.87
279 284 5.026790 TCCAACAAAAAGAAGGGGAAGAAA 58.973 37.500 0.00 0.00 0.00 2.52
282 287 6.183361 CCAACAAAAAGAAGGGGAAGAAAGAT 60.183 38.462 0.00 0.00 0.00 2.40
322 327 6.081356 ACCCCACCAAGATTGATAAGAAAAA 58.919 36.000 0.00 0.00 0.00 1.94
351 356 4.120755 GCCAGCCAAGAGGAGGGG 62.121 72.222 0.00 0.00 36.89 4.79
352 357 2.285668 CCAGCCAAGAGGAGGGGA 60.286 66.667 0.00 0.00 36.89 4.81
355 360 3.093172 GCCAAGAGGAGGGGAGGG 61.093 72.222 0.00 0.00 36.89 4.30
356 361 2.456840 CCAAGAGGAGGGGAGGGT 59.543 66.667 0.00 0.00 36.89 4.34
357 362 1.997874 CCAAGAGGAGGGGAGGGTG 60.998 68.421 0.00 0.00 36.89 4.61
358 363 1.229658 CAAGAGGAGGGGAGGGTGT 60.230 63.158 0.00 0.00 0.00 4.16
418 423 1.734465 ACACAGCAGATAAAAGCGAGC 59.266 47.619 0.00 0.00 35.48 5.03
419 424 1.002366 ACAGCAGATAAAAGCGAGCG 58.998 50.000 0.00 0.00 35.48 5.03
421 426 1.257415 CAGCAGATAAAAGCGAGCGAG 59.743 52.381 0.00 0.00 35.48 5.03
423 428 1.927174 GCAGATAAAAGCGAGCGAGAA 59.073 47.619 0.00 0.00 0.00 2.87
425 430 3.001736 GCAGATAAAAGCGAGCGAGAAAT 59.998 43.478 0.00 0.00 0.00 2.17
426 431 4.209288 GCAGATAAAAGCGAGCGAGAAATA 59.791 41.667 0.00 0.00 0.00 1.40
427 432 5.611412 GCAGATAAAAGCGAGCGAGAAATAG 60.611 44.000 0.00 0.00 0.00 1.73
428 433 5.687730 CAGATAAAAGCGAGCGAGAAATAGA 59.312 40.000 0.00 0.00 0.00 1.98
1015 1054 1.146263 CCGATGGAGCAGGTAACCC 59.854 63.158 0.00 0.00 37.17 4.11
1040 1079 4.471726 CGCGAGCGTACGAGGGTT 62.472 66.667 21.65 0.00 35.09 4.11
1041 1080 2.126189 GCGAGCGTACGAGGGTTT 60.126 61.111 21.65 0.00 35.09 3.27
1042 1081 2.157073 GCGAGCGTACGAGGGTTTC 61.157 63.158 21.65 0.00 35.09 2.78
1084 1155 8.356657 TCTTGTTTTTGTTCTTGTCTTCTCAAA 58.643 29.630 0.00 0.00 0.00 2.69
1085 1156 8.519492 TTGTTTTTGTTCTTGTCTTCTCAAAG 57.481 30.769 0.00 0.00 0.00 2.77
1086 1157 6.586082 TGTTTTTGTTCTTGTCTTCTCAAAGC 59.414 34.615 0.00 0.00 32.18 3.51
1087 1158 4.536364 TTGTTCTTGTCTTCTCAAAGCG 57.464 40.909 0.00 0.00 32.18 4.68
1088 1159 2.287915 TGTTCTTGTCTTCTCAAAGCGC 59.712 45.455 0.00 0.00 32.18 5.92
1089 1160 1.139989 TCTTGTCTTCTCAAAGCGCG 58.860 50.000 0.00 0.00 32.18 6.86
1107 1178 2.788581 CGCGTGTGGTGTGTTTGT 59.211 55.556 0.00 0.00 0.00 2.83
1108 1179 1.582424 CGCGTGTGGTGTGTTTGTG 60.582 57.895 0.00 0.00 0.00 3.33
1109 1180 1.871789 GCGTGTGGTGTGTTTGTGC 60.872 57.895 0.00 0.00 0.00 4.57
1110 1181 1.582424 CGTGTGGTGTGTTTGTGCG 60.582 57.895 0.00 0.00 0.00 5.34
1179 1250 3.549433 TACAAGGCCCGGGACAGGA 62.549 63.158 32.91 15.83 0.00 3.86
1315 1386 0.729816 GTCAAGTGCGTCGTCTCTCC 60.730 60.000 0.00 0.00 0.00 3.71
1326 1398 0.179029 CGTCTCTCCTCCTCCTCCTC 60.179 65.000 0.00 0.00 0.00 3.71
1327 1399 0.923358 GTCTCTCCTCCTCCTCCTCA 59.077 60.000 0.00 0.00 0.00 3.86
1329 1401 0.106217 CTCTCCTCCTCCTCCTCACC 60.106 65.000 0.00 0.00 0.00 4.02
1332 1404 2.443016 CTCCTCCTCCTCACCCCG 60.443 72.222 0.00 0.00 0.00 5.73
1333 1405 3.273654 TCCTCCTCCTCACCCCGT 61.274 66.667 0.00 0.00 0.00 5.28
1336 1408 4.393778 TCCTCCTCACCCCGTCCC 62.394 72.222 0.00 0.00 0.00 4.46
1463 1576 3.185246 AGTGGGCATTAAGTCGAGATG 57.815 47.619 0.00 0.00 0.00 2.90
1464 1577 2.158900 AGTGGGCATTAAGTCGAGATGG 60.159 50.000 0.00 0.00 0.00 3.51
1465 1578 2.115427 TGGGCATTAAGTCGAGATGGA 58.885 47.619 0.00 0.00 0.00 3.41
1466 1579 2.103094 TGGGCATTAAGTCGAGATGGAG 59.897 50.000 0.00 0.00 0.00 3.86
1467 1580 2.365617 GGGCATTAAGTCGAGATGGAGA 59.634 50.000 0.00 0.00 0.00 3.71
1468 1581 3.007398 GGGCATTAAGTCGAGATGGAGAT 59.993 47.826 0.00 0.00 0.00 2.75
1514 1640 2.295909 TGCAACAGTAAATGAACAGGCC 59.704 45.455 0.00 0.00 0.00 5.19
1534 1660 4.275196 GGCCGGATTTAGAACCTATGAAAC 59.725 45.833 5.05 0.00 0.00 2.78
1597 1725 8.871125 CCATCTATTTATAGGGTGAGTGTTAGT 58.129 37.037 0.00 0.00 0.00 2.24
1633 1761 5.277250 GCATTGTTGCTATACTGAGAAGCTC 60.277 44.000 0.00 0.00 45.77 4.09
1648 1776 2.203126 CTCTGCCCATTCCTCGCC 60.203 66.667 0.00 0.00 0.00 5.54
1759 1887 0.877743 GTCCAGAGTTTGCCAAGAGC 59.122 55.000 0.00 0.00 44.14 4.09
1832 1977 7.410407 GCTTTCCGTATTTATTTGCTTGAACAC 60.410 37.037 0.00 0.00 0.00 3.32
1833 1978 6.561737 TCCGTATTTATTTGCTTGAACACA 57.438 33.333 0.00 0.00 0.00 3.72
1915 2150 6.384015 TGGGAGTGATAGAATAATGTGAGTGT 59.616 38.462 0.00 0.00 0.00 3.55
1916 2151 6.703607 GGGAGTGATAGAATAATGTGAGTGTG 59.296 42.308 0.00 0.00 0.00 3.82
1917 2152 6.703607 GGAGTGATAGAATAATGTGAGTGTGG 59.296 42.308 0.00 0.00 0.00 4.17
1918 2153 7.417911 GGAGTGATAGAATAATGTGAGTGTGGA 60.418 40.741 0.00 0.00 0.00 4.02
1919 2154 7.495901 AGTGATAGAATAATGTGAGTGTGGAG 58.504 38.462 0.00 0.00 0.00 3.86
1920 2155 6.201806 GTGATAGAATAATGTGAGTGTGGAGC 59.798 42.308 0.00 0.00 0.00 4.70
1921 2156 4.558226 AGAATAATGTGAGTGTGGAGCA 57.442 40.909 0.00 0.00 0.00 4.26
1922 2157 4.511527 AGAATAATGTGAGTGTGGAGCAG 58.488 43.478 0.00 0.00 0.00 4.24
1923 2158 2.099141 TAATGTGAGTGTGGAGCAGC 57.901 50.000 0.00 0.00 0.00 5.25
1924 2159 0.109153 AATGTGAGTGTGGAGCAGCA 59.891 50.000 0.00 0.00 0.00 4.41
1925 2160 0.604780 ATGTGAGTGTGGAGCAGCAC 60.605 55.000 0.00 0.00 35.42 4.40
1926 2161 1.227645 GTGAGTGTGGAGCAGCACA 60.228 57.895 0.00 0.00 38.02 4.57
1927 2162 0.815213 GTGAGTGTGGAGCAGCACAA 60.815 55.000 0.00 0.00 38.02 3.33
1928 2163 0.533531 TGAGTGTGGAGCAGCACAAG 60.534 55.000 0.00 0.00 38.02 3.16
1929 2164 0.533755 GAGTGTGGAGCAGCACAAGT 60.534 55.000 0.00 0.00 38.02 3.16
1930 2165 0.758734 AGTGTGGAGCAGCACAAGTA 59.241 50.000 0.00 0.00 38.02 2.24
1931 2166 1.140852 AGTGTGGAGCAGCACAAGTAA 59.859 47.619 0.00 0.00 38.02 2.24
1932 2167 2.154462 GTGTGGAGCAGCACAAGTAAT 58.846 47.619 0.00 0.00 35.81 1.89
1933 2168 2.095567 GTGTGGAGCAGCACAAGTAATG 60.096 50.000 0.00 0.00 35.81 1.90
1934 2169 2.154462 GTGGAGCAGCACAAGTAATGT 58.846 47.619 0.00 0.00 45.34 2.71
1953 2188 2.036733 TGTAACCAAGGGACGTCTCTTG 59.963 50.000 39.59 39.59 39.83 3.02
1957 2192 2.256117 CAAGGGACGTCTCTTGGTTT 57.744 50.000 39.20 15.04 37.35 3.27
1960 2195 3.397849 AGGGACGTCTCTTGGTTTTAC 57.602 47.619 13.55 0.00 0.00 2.01
2016 2251 7.357303 GGCTTCTTGTTTCGTGTAAAAGAATA 58.643 34.615 0.00 0.00 28.40 1.75
2036 2271 6.876257 AGAATAGTTAGCTCTCCTTTGTTGTG 59.124 38.462 0.00 0.00 0.00 3.33
2158 2948 0.751277 CTGTTCACTTGGGCCACACA 60.751 55.000 5.23 3.55 0.00 3.72
2189 2979 2.086869 CAGTATGCACAGTTGGGGAAG 58.913 52.381 0.00 0.00 0.00 3.46
2257 3086 6.859508 CACATGTGATGTTTGGACATATATGC 59.140 38.462 21.64 5.71 46.27 3.14
2277 3107 8.904099 ATATGCATGTTTACTTTAGAGGTACC 57.096 34.615 10.16 2.73 0.00 3.34
2294 3124 5.016173 AGGTACCGTGTACCTACATTGTTA 58.984 41.667 25.32 0.00 45.47 2.41
2304 3134 9.609346 GTGTACCTACATTGTTATGGTAAGATT 57.391 33.333 13.76 0.00 38.63 2.40
2360 3190 6.205464 TCCTGTCACAAGAGATGTTCAAAATC 59.795 38.462 0.00 0.00 41.46 2.17
2368 3198 9.903682 ACAAGAGATGTTCAAAATCAATAGTTG 57.096 29.630 0.00 0.00 40.06 3.16
2377 3207 8.764287 GTTCAAAATCAATAGTTGGAAAACAGG 58.236 33.333 0.00 0.00 0.00 4.00
2378 3208 6.928492 TCAAAATCAATAGTTGGAAAACAGGC 59.072 34.615 0.00 0.00 0.00 4.85
2384 3214 5.959618 ATAGTTGGAAAACAGGCTTGTAC 57.040 39.130 0.22 0.00 36.23 2.90
2386 3216 3.883489 AGTTGGAAAACAGGCTTGTACTC 59.117 43.478 0.22 1.68 36.23 2.59
2387 3217 2.858745 TGGAAAACAGGCTTGTACTCC 58.141 47.619 17.67 17.67 38.10 3.85
2390 3220 2.861147 AAACAGGCTTGTACTCCCTC 57.139 50.000 0.22 0.00 36.23 4.30
2391 3221 0.984995 AACAGGCTTGTACTCCCTCC 59.015 55.000 0.22 0.00 36.23 4.30
2392 3222 1.258445 ACAGGCTTGTACTCCCTCCG 61.258 60.000 0.00 0.00 35.25 4.63
2393 3223 1.078710 AGGCTTGTACTCCCTCCGT 59.921 57.895 0.00 0.00 0.00 4.69
2394 3224 0.544595 AGGCTTGTACTCCCTCCGTT 60.545 55.000 0.00 0.00 0.00 4.44
2395 3225 0.108281 GGCTTGTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
2396 3226 0.108281 GCTTGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
2397 3227 1.558233 CTTGTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
2398 3228 2.731572 CTTGTACTCCCTCCGTTCCTA 58.268 52.381 0.00 0.00 0.00 2.94
2399 3229 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2400 3230 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2401 3231 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2402 3232 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2403 3233 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2404 3234 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2405 3235 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2406 3236 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2407 3237 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2408 3238 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2409 3239 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2410 3240 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2411 3241 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2412 3242 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
2413 3243 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
2430 3260 9.883142 AAGTCTTTCTAGAGATTTCAATAGGTG 57.117 33.333 0.00 0.00 0.00 4.00
2431 3261 9.261035 AGTCTTTCTAGAGATTTCAATAGGTGA 57.739 33.333 0.00 0.00 0.00 4.02
2432 3262 9.308318 GTCTTTCTAGAGATTTCAATAGGTGAC 57.692 37.037 0.00 0.00 35.39 3.67
2445 3275 2.139323 AGGTGACTACATACGGAGCA 57.861 50.000 0.00 0.00 40.61 4.26
2446 3276 2.453521 AGGTGACTACATACGGAGCAA 58.546 47.619 0.00 0.00 40.61 3.91
2447 3277 2.829720 AGGTGACTACATACGGAGCAAA 59.170 45.455 0.00 0.00 40.61 3.68
2448 3278 3.259876 AGGTGACTACATACGGAGCAAAA 59.740 43.478 0.00 0.00 40.61 2.44
2449 3279 4.081087 AGGTGACTACATACGGAGCAAAAT 60.081 41.667 0.00 0.00 40.61 1.82
2450 3280 4.034048 GGTGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
2451 3281 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2452 3282 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
2453 3283 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2454 3284 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
2455 3285 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
2456 3286 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
2457 3287 4.154195 ACATACGGAGCAAAATGAGTGAAC 59.846 41.667 0.00 0.00 0.00 3.18
2458 3288 1.880027 ACGGAGCAAAATGAGTGAACC 59.120 47.619 0.00 0.00 0.00 3.62
2459 3289 2.154462 CGGAGCAAAATGAGTGAACCT 58.846 47.619 0.00 0.00 0.00 3.50
2460 3290 3.244422 ACGGAGCAAAATGAGTGAACCTA 60.244 43.478 0.00 0.00 0.00 3.08
2461 3291 3.125316 CGGAGCAAAATGAGTGAACCTAC 59.875 47.826 0.00 0.00 0.00 3.18
2462 3292 4.072131 GGAGCAAAATGAGTGAACCTACA 58.928 43.478 0.00 0.00 0.00 2.74
2463 3293 4.083271 GGAGCAAAATGAGTGAACCTACAC 60.083 45.833 0.00 0.00 40.60 2.90
2477 3307 9.036980 AGTGAACCTACACTCTAAAATATGTCT 57.963 33.333 0.00 0.00 46.36 3.41
2502 3332 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
2503 3333 4.119442 ACATCCGTATGTTGTAGTCCAC 57.881 45.455 0.00 0.00 44.07 4.02
2504 3334 3.767673 ACATCCGTATGTTGTAGTCCACT 59.232 43.478 0.00 0.00 44.07 4.00
2505 3335 4.222145 ACATCCGTATGTTGTAGTCCACTT 59.778 41.667 0.00 0.00 44.07 3.16
2506 3336 4.182693 TCCGTATGTTGTAGTCCACTTG 57.817 45.455 0.00 0.00 0.00 3.16
2507 3337 3.575256 TCCGTATGTTGTAGTCCACTTGT 59.425 43.478 0.00 0.00 0.00 3.16
2508 3338 4.766373 TCCGTATGTTGTAGTCCACTTGTA 59.234 41.667 0.00 0.00 0.00 2.41
2509 3339 5.243507 TCCGTATGTTGTAGTCCACTTGTAA 59.756 40.000 0.00 0.00 0.00 2.41
2510 3340 6.071221 TCCGTATGTTGTAGTCCACTTGTAAT 60.071 38.462 0.00 0.00 0.00 1.89
2511 3341 6.035650 CCGTATGTTGTAGTCCACTTGTAATG 59.964 42.308 0.00 0.00 0.00 1.90
2512 3342 6.588756 CGTATGTTGTAGTCCACTTGTAATGT 59.411 38.462 0.00 0.00 0.00 2.71
2513 3343 7.201410 CGTATGTTGTAGTCCACTTGTAATGTC 60.201 40.741 0.00 0.00 0.00 3.06
2514 3344 6.169557 TGTTGTAGTCCACTTGTAATGTCT 57.830 37.500 0.00 0.00 0.00 3.41
2515 3345 7.292713 TGTTGTAGTCCACTTGTAATGTCTA 57.707 36.000 0.00 0.00 0.00 2.59
2516 3346 7.728148 TGTTGTAGTCCACTTGTAATGTCTAA 58.272 34.615 0.00 0.00 0.00 2.10
2517 3347 8.205512 TGTTGTAGTCCACTTGTAATGTCTAAA 58.794 33.333 0.00 0.00 0.00 1.85
2518 3348 9.048446 GTTGTAGTCCACTTGTAATGTCTAAAA 57.952 33.333 0.00 0.00 0.00 1.52
2519 3349 9.616156 TTGTAGTCCACTTGTAATGTCTAAAAA 57.384 29.630 0.00 0.00 0.00 1.94
2520 3350 9.268268 TGTAGTCCACTTGTAATGTCTAAAAAG 57.732 33.333 0.00 0.00 0.00 2.27
2521 3351 9.485206 GTAGTCCACTTGTAATGTCTAAAAAGA 57.515 33.333 0.00 0.00 0.00 2.52
2522 3352 8.379457 AGTCCACTTGTAATGTCTAAAAAGAC 57.621 34.615 0.00 0.00 39.15 3.01
2523 3353 8.211629 AGTCCACTTGTAATGTCTAAAAAGACT 58.788 33.333 7.04 0.00 39.41 3.24
2524 3354 8.837389 GTCCACTTGTAATGTCTAAAAAGACTT 58.163 33.333 7.04 0.00 39.41 3.01
2537 3367 9.897349 GTCTAAAAAGACTTATATTTCGGAACG 57.103 33.333 0.00 0.00 44.07 3.95
2552 3382 3.840124 GGAACGGAGGGAGTATTTGAT 57.160 47.619 0.00 0.00 0.00 2.57
2553 3383 4.152284 GGAACGGAGGGAGTATTTGATT 57.848 45.455 0.00 0.00 0.00 2.57
2554 3384 4.524053 GGAACGGAGGGAGTATTTGATTT 58.476 43.478 0.00 0.00 0.00 2.17
2555 3385 4.575236 GGAACGGAGGGAGTATTTGATTTC 59.425 45.833 0.00 0.00 0.00 2.17
2556 3386 5.429130 GAACGGAGGGAGTATTTGATTTCT 58.571 41.667 0.00 0.00 0.00 2.52
2557 3387 6.407752 GGAACGGAGGGAGTATTTGATTTCTA 60.408 42.308 0.00 0.00 0.00 2.10
2558 3388 5.915175 ACGGAGGGAGTATTTGATTTCTAC 58.085 41.667 0.00 0.00 0.00 2.59
2559 3389 5.424252 ACGGAGGGAGTATTTGATTTCTACA 59.576 40.000 0.00 0.00 0.00 2.74
2560 3390 5.986135 CGGAGGGAGTATTTGATTTCTACAG 59.014 44.000 0.00 0.00 0.00 2.74
2587 3417 8.893219 TGCAATGTTTATTGTTGGAAATGTAA 57.107 26.923 0.00 0.00 44.41 2.41
2657 3488 2.227194 CCATCGTTATAAACTGGGCCC 58.773 52.381 17.59 17.59 0.00 5.80
2670 3501 2.938428 TGGGCCCACCAGAATAAATT 57.062 45.000 24.45 0.00 46.80 1.82
2671 3502 2.465813 TGGGCCCACCAGAATAAATTG 58.534 47.619 24.45 0.00 46.80 2.32
2673 3504 2.837591 GGGCCCACCAGAATAAATTGTT 59.162 45.455 19.95 0.00 39.85 2.83
2674 3505 3.369366 GGGCCCACCAGAATAAATTGTTG 60.369 47.826 19.95 0.00 39.85 3.33
2675 3506 3.261580 GCCCACCAGAATAAATTGTTGC 58.738 45.455 0.00 0.00 0.00 4.17
2717 3548 6.913170 TCTGCTTAATGTTGGAATTTCTGAC 58.087 36.000 0.00 0.00 0.00 3.51
2723 3554 8.634335 TTAATGTTGGAATTTCTGACATCTCA 57.366 30.769 14.24 5.38 31.10 3.27
2727 3558 5.633830 TGGAATTTCTGACATCTCAAAGC 57.366 39.130 0.00 0.00 0.00 3.51
2731 3562 4.997905 TTTCTGACATCTCAAAGCGAAG 57.002 40.909 0.00 0.00 0.00 3.79
2732 3563 2.964740 TCTGACATCTCAAAGCGAAGG 58.035 47.619 0.00 0.00 0.00 3.46
2752 3583 6.465439 AAGGTTGGAGTTCTTTTTAACCTG 57.535 37.500 7.18 0.00 45.08 4.00
2753 3584 5.516044 AGGTTGGAGTTCTTTTTAACCTGT 58.484 37.500 5.73 0.00 44.39 4.00
2754 3585 5.593095 AGGTTGGAGTTCTTTTTAACCTGTC 59.407 40.000 5.73 0.00 44.39 3.51
2755 3586 5.358725 GGTTGGAGTTCTTTTTAACCTGTCA 59.641 40.000 0.00 0.00 35.77 3.58
2756 3587 6.263344 GTTGGAGTTCTTTTTAACCTGTCAC 58.737 40.000 0.00 0.00 0.00 3.67
2757 3588 4.573201 TGGAGTTCTTTTTAACCTGTCACG 59.427 41.667 0.00 0.00 0.00 4.35
2759 3590 5.469084 GGAGTTCTTTTTAACCTGTCACGAT 59.531 40.000 0.00 0.00 0.00 3.73
2760 3591 6.647895 GGAGTTCTTTTTAACCTGTCACGATA 59.352 38.462 0.00 0.00 0.00 2.92
2761 3592 7.333672 GGAGTTCTTTTTAACCTGTCACGATAT 59.666 37.037 0.00 0.00 0.00 1.63
2763 3594 9.367444 AGTTCTTTTTAACCTGTCACGATATAG 57.633 33.333 0.00 0.00 0.00 1.31
2764 3595 9.148104 GTTCTTTTTAACCTGTCACGATATAGT 57.852 33.333 0.00 0.00 0.00 2.12
2787 3640 3.916035 TGGATACACTACAGGAGCAGAT 58.084 45.455 0.00 0.00 46.17 2.90
2792 3645 4.946478 ACACTACAGGAGCAGATAATCC 57.054 45.455 0.00 0.00 35.71 3.01
2794 3647 4.904251 ACACTACAGGAGCAGATAATCCAT 59.096 41.667 0.00 0.00 38.12 3.41
2834 3687 3.606687 CTTGGGCTTTAGTACCGAACAT 58.393 45.455 0.00 0.00 0.00 2.71
2845 3698 0.833287 ACCGAACATGATAGCTGGCT 59.167 50.000 0.00 0.00 0.00 4.75
2848 3704 3.071602 ACCGAACATGATAGCTGGCTAAT 59.928 43.478 0.00 0.00 31.73 1.73
2884 3740 8.783660 TCCTCCTCAAATTAGATGTACTGTAT 57.216 34.615 0.00 0.00 0.00 2.29
2910 3766 6.514063 ACACTCTTTGTTCTACAGTAACTCC 58.486 40.000 0.00 0.00 33.09 3.85
2917 3773 7.592885 TTGTTCTACAGTAACTCCTGTAAGT 57.407 36.000 3.01 0.00 44.88 2.24
2942 3798 8.690840 GTTGTAAATAAAACATGTCTTCACTGC 58.309 33.333 0.00 0.00 0.00 4.40
2977 3833 5.518848 TGTTGCTATAAATGATTGGCAGG 57.481 39.130 0.00 0.00 0.00 4.85
2996 3852 2.930295 TGGCACCACCACCATCAA 59.070 55.556 0.00 0.00 46.36 2.57
3052 3908 4.006780 TCTGTCATGCTTGCTGTCTTTA 57.993 40.909 0.00 0.00 0.00 1.85
3085 3941 0.467804 TGCACACAGAACTGGCACTA 59.532 50.000 6.76 0.00 34.19 2.74
3107 3963 7.657761 CACTATGTCCTTCAACTAACACTTCTT 59.342 37.037 0.00 0.00 0.00 2.52
3111 3967 6.984474 TGTCCTTCAACTAACACTTCTTACAG 59.016 38.462 0.00 0.00 0.00 2.74
3132 3988 1.077265 ATGGCCTGTGGTCTTTGGG 59.923 57.895 3.32 0.00 0.00 4.12
3164 4020 7.701539 AGTTGGTGCATTTCTTGACATATTA 57.298 32.000 0.00 0.00 0.00 0.98
3197 4053 8.823220 ATTAGTATTACCTGTTTCTTGGCATT 57.177 30.769 0.00 0.00 0.00 3.56
3198 4054 9.914834 ATTAGTATTACCTGTTTCTTGGCATTA 57.085 29.630 0.00 0.00 0.00 1.90
3199 4055 9.914834 TTAGTATTACCTGTTTCTTGGCATTAT 57.085 29.630 0.00 0.00 0.00 1.28
3201 4057 9.561069 AGTATTACCTGTTTCTTGGCATTATAG 57.439 33.333 0.00 0.00 0.00 1.31
3202 4058 9.338622 GTATTACCTGTTTCTTGGCATTATAGT 57.661 33.333 0.00 0.00 0.00 2.12
3205 4061 9.914834 TTACCTGTTTCTTGGCATTATAGTATT 57.085 29.630 0.00 0.00 0.00 1.89
3206 4062 8.225603 ACCTGTTTCTTGGCATTATAGTATTG 57.774 34.615 0.00 0.00 0.00 1.90
3207 4063 7.141363 CCTGTTTCTTGGCATTATAGTATTGC 58.859 38.462 0.00 0.00 35.06 3.56
3208 4064 7.201812 CCTGTTTCTTGGCATTATAGTATTGCA 60.202 37.037 8.66 0.00 36.92 4.08
3214 4070 8.163408 TCTTGGCATTATAGTATTGCAGGTAAT 58.837 33.333 8.66 0.00 36.92 1.89
3225 4081 8.494016 AGTATTGCAGGTAATGTTAGAGTTTC 57.506 34.615 0.00 0.00 0.00 2.78
3253 4109 6.469139 CAATATGAATTGTTGCAACTTGCA 57.531 33.333 28.61 20.60 43.14 4.08
3270 4126 7.254387 GCAACTTGCAACACATTTTAGATCAAA 60.254 33.333 8.97 0.00 44.26 2.69
3271 4127 7.698836 ACTTGCAACACATTTTAGATCAAAC 57.301 32.000 0.00 0.00 0.00 2.93
3330 4186 9.431887 TGTTACTTTATTAAGAGGCTTACACTG 57.568 33.333 0.00 0.00 35.30 3.66
3331 4187 9.433153 GTTACTTTATTAAGAGGCTTACACTGT 57.567 33.333 0.00 0.00 35.30 3.55
3334 4190 9.433153 ACTTTATTAAGAGGCTTACACTGTTAC 57.567 33.333 0.00 0.00 35.30 2.50
3335 4191 9.431887 CTTTATTAAGAGGCTTACACTGTTACA 57.568 33.333 0.00 0.00 32.92 2.41
3359 4215 7.549488 ACACAGAGAGTAACAAAATATAGCACC 59.451 37.037 0.00 0.00 0.00 5.01
3363 4219 8.322091 AGAGAGTAACAAAATATAGCACCAGTT 58.678 33.333 0.00 0.00 0.00 3.16
3369 4225 5.105756 ACAAAATATAGCACCAGTTCAAGCC 60.106 40.000 0.00 0.00 0.00 4.35
3388 4244 3.118884 AGCCTTGCATCTTATTTTGCTGG 60.119 43.478 0.00 0.00 39.60 4.85
3395 4251 7.830940 TGCATCTTATTTTGCTGGTTTTATG 57.169 32.000 0.00 0.00 39.60 1.90
3399 4255 6.630071 TCTTATTTTGCTGGTTTTATGCCTC 58.370 36.000 0.00 0.00 0.00 4.70
3401 4257 2.300956 TTGCTGGTTTTATGCCTCCA 57.699 45.000 0.00 0.00 0.00 3.86
3430 4286 4.989797 GCATATTCATGTCTGACTCAGAGG 59.010 45.833 9.13 2.93 41.46 3.69
3433 4289 5.590530 ATTCATGTCTGACTCAGAGGTAC 57.409 43.478 9.13 0.00 41.46 3.34
3434 4290 3.357203 TCATGTCTGACTCAGAGGTACC 58.643 50.000 9.13 2.73 41.46 3.34
3448 4304 3.197983 AGAGGTACCCTTGTCTGTATTGC 59.802 47.826 8.74 0.00 31.76 3.56
3452 4308 0.447801 CCCTTGTCTGTATTGCGTGC 59.552 55.000 0.00 0.00 0.00 5.34
3453 4309 1.155889 CCTTGTCTGTATTGCGTGCA 58.844 50.000 0.00 0.00 0.00 4.57
3456 4312 1.807139 TGTCTGTATTGCGTGCACAT 58.193 45.000 18.64 5.47 0.00 3.21
3458 4314 3.330267 TGTCTGTATTGCGTGCACATTA 58.670 40.909 18.64 0.49 0.00 1.90
3459 4315 3.370672 TGTCTGTATTGCGTGCACATTAG 59.629 43.478 18.64 0.81 0.00 1.73
3469 4325 3.361644 GCGTGCACATTAGTTCATTGTTG 59.638 43.478 18.64 0.00 0.00 3.33
3505 4361 7.174946 CACTGAATGTCACTGGTATTTAGGTTT 59.825 37.037 0.00 0.00 0.00 3.27
3514 4370 7.613801 TCACTGGTATTTAGGTTTTATGCACAT 59.386 33.333 0.00 0.00 0.00 3.21
3587 4443 8.154856 ACTGTAACTACATTGTTGTGGTAAGAT 58.845 33.333 4.66 0.00 45.70 2.40
3589 4445 8.995220 TGTAACTACATTGTTGTGGTAAGATTC 58.005 33.333 4.66 0.00 45.70 2.52
3621 4477 8.845413 ATTATTCTTGAGCTAGCTAATTCCTG 57.155 34.615 19.38 4.27 0.00 3.86
3623 4479 5.269505 TCTTGAGCTAGCTAATTCCTGTC 57.730 43.478 19.38 2.26 0.00 3.51
3624 4480 4.100189 TCTTGAGCTAGCTAATTCCTGTCC 59.900 45.833 19.38 1.13 0.00 4.02
3628 4484 3.118223 AGCTAGCTAATTCCTGTCCCAAC 60.118 47.826 17.69 0.00 0.00 3.77
3629 4485 3.370527 GCTAGCTAATTCCTGTCCCAACA 60.371 47.826 7.70 0.00 0.00 3.33
3643 4499 6.968263 TGTCCCAACAGATGTTAAAATGAA 57.032 33.333 0.00 0.00 36.32 2.57
3644 4500 7.537596 TGTCCCAACAGATGTTAAAATGAAT 57.462 32.000 0.00 0.00 36.32 2.57
3645 4501 8.642935 TGTCCCAACAGATGTTAAAATGAATA 57.357 30.769 0.00 0.00 36.32 1.75
3646 4502 8.739039 TGTCCCAACAGATGTTAAAATGAATAG 58.261 33.333 0.00 0.00 36.32 1.73
3680 4536 9.962710 ACAGAGCTGTGTTTGCTTTACAAATGG 62.963 40.741 11.36 0.00 42.31 3.16
3704 4560 6.983890 GGAATGTTTGTTGTTGGAAATGTAGT 59.016 34.615 0.00 0.00 0.00 2.73
3705 4561 7.169140 GGAATGTTTGTTGTTGGAAATGTAGTC 59.831 37.037 0.00 0.00 0.00 2.59
3715 4571 8.385898 TGTTGGAAATGTAGTCGTATTTCTTT 57.614 30.769 0.00 0.00 41.04 2.52
3737 4593 9.239002 TCTTTTACAAATGTAACCGTTTCAATG 57.761 29.630 5.53 1.23 39.92 2.82
3740 4596 8.563289 TTACAAATGTAACCGTTTCAATGTTC 57.437 30.769 13.88 0.00 35.75 3.18
3745 4601 5.524284 TGTAACCGTTTCAATGTTCATTGG 58.476 37.500 20.59 10.23 32.65 3.16
3749 4605 6.582677 ACCGTTTCAATGTTCATTGGATTA 57.417 33.333 20.59 3.83 32.65 1.75
3757 4613 8.812513 TCAATGTTCATTGGATTATCTTCACT 57.187 30.769 20.59 0.00 32.65 3.41
3914 4770 1.212688 CATGGCTCTGGGTAACATGGA 59.787 52.381 0.00 0.00 36.25 3.41
3949 4805 8.270744 AGGAACAGATAATCAGTATTGCTTTCT 58.729 33.333 0.00 0.00 0.00 2.52
3958 4814 3.553511 CAGTATTGCTTTCTAGGACTGCG 59.446 47.826 0.00 0.00 0.00 5.18
3959 4815 3.447586 AGTATTGCTTTCTAGGACTGCGA 59.552 43.478 0.00 0.00 0.00 5.10
3973 4829 0.315568 CTGCGATGGGCTCTAGTACC 59.684 60.000 0.00 0.00 44.05 3.34
3974 4830 0.396556 TGCGATGGGCTCTAGTACCA 60.397 55.000 5.52 5.52 44.05 3.25
3979 4835 3.738281 CGATGGGCTCTAGTACCAAACAG 60.738 52.174 6.84 0.00 37.89 3.16
4025 4887 6.516739 TCTCCTCAAACTAGATGTACTGTG 57.483 41.667 0.00 0.00 0.00 3.66
4037 4899 5.853936 AGATGTACTGTGCAACACTCTTTA 58.146 37.500 1.96 0.00 45.67 1.85
4041 4903 3.467803 ACTGTGCAACACTCTTTACTCC 58.532 45.455 0.00 0.00 45.67 3.85
4043 4905 3.202906 TGTGCAACACTCTTTACTCCAC 58.797 45.455 0.00 0.00 45.67 4.02
4044 4906 3.202906 GTGCAACACTCTTTACTCCACA 58.797 45.455 0.00 0.00 36.32 4.17
4234 5105 2.591715 ACAGAACTGGCACCGTGC 60.592 61.111 15.50 15.50 44.08 5.34
4420 5291 6.262273 ACATTTTAGATCAACCGAGTTGTGTT 59.738 34.615 13.95 6.06 43.23 3.32
4446 5317 6.308766 GGTAAACATCAAGTTCATGCAACATC 59.691 38.462 0.00 0.00 40.26 3.06
4587 5459 8.402798 TCAGAAAATGCATTAACTTCTGGTTA 57.597 30.769 32.34 20.75 42.05 2.85
4812 5687 7.222224 CCGTACATTTACTCATGAGGTACTTTC 59.778 40.741 26.08 9.43 41.55 2.62
4813 5688 7.974501 CGTACATTTACTCATGAGGTACTTTCT 59.025 37.037 26.08 5.60 41.55 2.52
4815 5690 8.779354 ACATTTACTCATGAGGTACTTTCTTC 57.221 34.615 26.08 0.00 41.55 2.87
4816 5691 8.375506 ACATTTACTCATGAGGTACTTTCTTCA 58.624 33.333 26.08 0.00 41.55 3.02
4891 5768 6.636666 AATTTGTTGATGCTATTTTGCTCG 57.363 33.333 0.00 0.00 0.00 5.03
4894 5771 5.469373 TGTTGATGCTATTTTGCTCGTAG 57.531 39.130 0.00 0.00 0.00 3.51
4935 5812 6.409704 TGCATCTAAACAAGCTCATACTTCT 58.590 36.000 0.00 0.00 0.00 2.85
4936 5813 6.881065 TGCATCTAAACAAGCTCATACTTCTT 59.119 34.615 0.00 0.00 0.00 2.52
4937 5814 7.065085 TGCATCTAAACAAGCTCATACTTCTTC 59.935 37.037 0.00 0.00 0.00 2.87
5130 6007 3.725490 TGGCGATTCTGAGATTGATGAG 58.275 45.455 0.00 0.00 0.00 2.90
5292 6173 2.624674 AAACTTGGCCAGGCGTGAGT 62.625 55.000 16.02 7.29 0.00 3.41
5383 6264 1.003116 CATTAGACGCTCATGGCAAGC 60.003 52.381 0.97 0.97 41.91 4.01
5445 6326 3.305608 CCTTTTGGAACCTTCACTGATGC 60.306 47.826 0.00 0.00 44.07 3.91
5623 6509 1.611673 CCAAACAAGAGGATCACGGCT 60.612 52.381 0.00 0.00 37.82 5.52
5668 6554 4.104086 ACTTCAAGGACATGGAGATGGTA 58.896 43.478 0.00 0.00 33.39 3.25
5984 6875 3.096357 CCCCCTCCGTCCCAAAAT 58.904 61.111 0.00 0.00 0.00 1.82
5985 6876 1.386550 CCCCCTCCGTCCCAAAATT 59.613 57.895 0.00 0.00 0.00 1.82
5986 6877 0.683179 CCCCCTCCGTCCCAAAATTC 60.683 60.000 0.00 0.00 0.00 2.17
5987 6878 0.331616 CCCCTCCGTCCCAAAATTCT 59.668 55.000 0.00 0.00 0.00 2.40
5988 6879 1.272480 CCCCTCCGTCCCAAAATTCTT 60.272 52.381 0.00 0.00 0.00 2.52
5989 6880 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
5990 6881 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
5991 6882 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
5992 6883 3.146066 CTCCGTCCCAAAATTCTTGTCA 58.854 45.455 0.00 0.00 0.00 3.58
5993 6884 3.556999 TCCGTCCCAAAATTCTTGTCAA 58.443 40.909 0.00 0.00 0.00 3.18
5994 6885 3.316868 TCCGTCCCAAAATTCTTGTCAAC 59.683 43.478 0.00 0.00 0.00 3.18
5995 6886 3.296628 CGTCCCAAAATTCTTGTCAACG 58.703 45.455 0.00 0.00 0.00 4.10
5996 6887 3.242936 CGTCCCAAAATTCTTGTCAACGT 60.243 43.478 0.00 0.00 0.00 3.99
5997 6888 4.041723 GTCCCAAAATTCTTGTCAACGTG 58.958 43.478 0.00 0.00 0.00 4.49
5998 6889 3.948473 TCCCAAAATTCTTGTCAACGTGA 59.052 39.130 0.00 0.00 0.00 4.35
6010 6901 4.842139 GTCAACGTGACTTGATACATCC 57.158 45.455 9.86 0.00 43.73 3.51
6011 6902 3.303495 GTCAACGTGACTTGATACATCCG 59.697 47.826 9.86 0.00 43.73 4.18
6012 6903 3.057104 TCAACGTGACTTGATACATCCGT 60.057 43.478 0.00 0.00 0.00 4.69
6013 6904 4.156373 TCAACGTGACTTGATACATCCGTA 59.844 41.667 0.00 0.00 0.00 4.02
6014 6905 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
6015 6906 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
6016 6907 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
6017 6908 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
6018 6909 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
6019 6910 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
6020 6911 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
6021 6912 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
6022 6913 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
6023 6914 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
6024 6915 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
6031 6922 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
6032 6923 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
6034 6925 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
6035 6926 8.818057 CCGTATTTAGACAAATCTAAGACAAGG 58.182 37.037 9.81 4.16 45.93 3.61
6036 6927 9.582431 CGTATTTAGACAAATCTAAGACAAGGA 57.418 33.333 9.81 0.00 45.93 3.36
6042 6933 8.115490 AGACAAATCTAAGACAAGGATTTTGG 57.885 34.615 0.00 0.00 37.51 3.28
6043 6934 7.177392 AGACAAATCTAAGACAAGGATTTTGGG 59.823 37.037 0.00 0.00 37.51 4.12
6044 6935 7.010160 ACAAATCTAAGACAAGGATTTTGGGA 58.990 34.615 0.00 0.00 37.51 4.37
6045 6936 7.039714 ACAAATCTAAGACAAGGATTTTGGGAC 60.040 37.037 0.00 0.00 37.51 4.46
6046 6937 4.575885 TCTAAGACAAGGATTTTGGGACG 58.424 43.478 0.00 0.00 0.00 4.79
6047 6938 2.200373 AGACAAGGATTTTGGGACGG 57.800 50.000 0.00 0.00 0.00 4.79
6048 6939 1.702957 AGACAAGGATTTTGGGACGGA 59.297 47.619 0.00 0.00 0.00 4.69
6049 6940 2.084546 GACAAGGATTTTGGGACGGAG 58.915 52.381 0.00 0.00 0.00 4.63
6050 6941 1.271926 ACAAGGATTTTGGGACGGAGG 60.272 52.381 0.00 0.00 0.00 4.30
6051 6942 0.331616 AAGGATTTTGGGACGGAGGG 59.668 55.000 0.00 0.00 0.00 4.30
6052 6943 0.549169 AGGATTTTGGGACGGAGGGA 60.549 55.000 0.00 0.00 0.00 4.20
6053 6944 0.107165 GGATTTTGGGACGGAGGGAG 60.107 60.000 0.00 0.00 0.00 4.30
6131 7022 1.555533 AGTGCTAAGCCTAACCAGTCC 59.444 52.381 0.00 0.00 0.00 3.85
6517 7738 1.466167 GTGTGCTTGTATGCAGTCCAG 59.534 52.381 0.00 0.00 44.20 3.86
6518 7739 1.089920 GTGCTTGTATGCAGTCCAGG 58.910 55.000 0.00 0.00 44.20 4.45
6524 7774 0.535335 GTATGCAGTCCAGGGAACGA 59.465 55.000 0.00 0.00 0.00 3.85
6529 7779 1.918800 AGTCCAGGGAACGAAGGGG 60.919 63.158 0.00 0.00 0.00 4.79
6554 7804 8.908786 GGTACCATCTCATAATCAATCAAAGA 57.091 34.615 7.15 0.00 0.00 2.52
6555 7805 8.778358 GGTACCATCTCATAATCAATCAAAGAC 58.222 37.037 7.15 0.00 0.00 3.01
6577 7827 7.533426 AGACACAAAAGCATAAGATCATGTTC 58.467 34.615 0.00 0.00 0.00 3.18
6580 7830 5.163622 ACAAAAGCATAAGATCATGTTCCGG 60.164 40.000 0.00 0.00 0.00 5.14
6585 7835 5.012046 AGCATAAGATCATGTTCCGGTATCA 59.988 40.000 0.00 0.00 0.00 2.15
6631 7885 2.681848 CCAGTGCAGCTAAAAGAGATGG 59.318 50.000 0.00 0.00 42.15 3.51
6646 7913 3.328931 AGAGATGGACACACTCAATTGGT 59.671 43.478 5.42 0.00 33.69 3.67
6656 7923 6.279882 ACACACTCAATTGGTTTGTAAATGG 58.720 36.000 13.69 3.78 36.65 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.221466 CTTGTGCTCGGCTCGAACAA 61.221 55.000 11.64 11.64 35.29 2.83
17 18 1.222115 AACTTGTGCTCGGCTCGAAC 61.222 55.000 0.00 0.00 34.74 3.95
18 19 0.944311 GAACTTGTGCTCGGCTCGAA 60.944 55.000 0.00 0.00 34.74 3.71
20 21 1.221466 TTGAACTTGTGCTCGGCTCG 61.221 55.000 0.00 0.00 0.00 5.03
60 61 3.999001 AGTACGACATGTCACGTCTTCTA 59.001 43.478 24.93 1.37 42.61 2.10
75 76 4.630069 ACCATCTGCATTGTTAAGTACGAC 59.370 41.667 0.00 0.00 0.00 4.34
78 79 5.584649 TGCTACCATCTGCATTGTTAAGTAC 59.415 40.000 0.00 0.00 33.94 2.73
111 114 3.576982 TGTTGTTTATCGTCTCCTGGACT 59.423 43.478 0.00 0.00 42.44 3.85
143 148 4.152223 TCGTTGTTTATCGTGTACTCTCGA 59.848 41.667 9.75 9.75 42.27 4.04
148 153 5.463286 TGATGTCGTTGTTTATCGTGTACT 58.537 37.500 0.00 0.00 0.00 2.73
158 163 1.202758 TGAGCCCTGATGTCGTTGTTT 60.203 47.619 0.00 0.00 0.00 2.83
226 231 3.011257 GGATCTAGTGAGCCTCCTCCTAT 59.989 52.174 0.00 0.00 44.81 2.57
236 241 3.307339 GGATTGGGATGGATCTAGTGAGC 60.307 52.174 0.00 0.00 0.00 4.26
276 281 7.658575 GGGGTTTTTGTAAGGGTTTTATCTTTC 59.341 37.037 0.00 0.00 0.00 2.62
277 282 7.127493 TGGGGTTTTTGTAAGGGTTTTATCTTT 59.873 33.333 0.00 0.00 0.00 2.52
279 284 6.042322 GTGGGGTTTTTGTAAGGGTTTTATCT 59.958 38.462 0.00 0.00 0.00 1.98
282 287 4.408270 GGTGGGGTTTTTGTAAGGGTTTTA 59.592 41.667 0.00 0.00 0.00 1.52
322 327 2.510551 GGCTGGCTTTTGGTGGCTT 61.511 57.895 0.00 0.00 0.00 4.35
323 328 2.919328 GGCTGGCTTTTGGTGGCT 60.919 61.111 0.00 0.00 0.00 4.75
324 329 2.720358 CTTGGCTGGCTTTTGGTGGC 62.720 60.000 2.00 0.00 0.00 5.01
325 330 1.114722 TCTTGGCTGGCTTTTGGTGG 61.115 55.000 2.00 0.00 0.00 4.61
351 356 2.529389 AGTCCACCCCACACCCTC 60.529 66.667 0.00 0.00 0.00 4.30
352 357 2.854032 CAGTCCACCCCACACCCT 60.854 66.667 0.00 0.00 0.00 4.34
355 360 1.073199 CCTTCAGTCCACCCCACAC 59.927 63.158 0.00 0.00 0.00 3.82
356 361 1.074090 TCCTTCAGTCCACCCCACA 60.074 57.895 0.00 0.00 0.00 4.17
357 362 0.836400 TCTCCTTCAGTCCACCCCAC 60.836 60.000 0.00 0.00 0.00 4.61
358 363 0.104672 TTCTCCTTCAGTCCACCCCA 60.105 55.000 0.00 0.00 0.00 4.96
391 396 4.214119 GCTTTTATCTGCTGTGTTGACTGA 59.786 41.667 0.00 0.00 0.00 3.41
418 423 2.619177 TCCTCCTCGCTTCTATTTCTCG 59.381 50.000 0.00 0.00 0.00 4.04
419 424 3.243602 GGTCCTCCTCGCTTCTATTTCTC 60.244 52.174 0.00 0.00 0.00 2.87
421 426 2.431057 TGGTCCTCCTCGCTTCTATTTC 59.569 50.000 0.00 0.00 34.23 2.17
423 428 2.035632 CTGGTCCTCCTCGCTTCTATT 58.964 52.381 0.00 0.00 34.23 1.73
425 430 1.038130 GCTGGTCCTCCTCGCTTCTA 61.038 60.000 0.00 0.00 34.23 2.10
426 431 2.355193 GCTGGTCCTCCTCGCTTCT 61.355 63.158 0.00 0.00 34.23 2.85
427 432 2.185608 GCTGGTCCTCCTCGCTTC 59.814 66.667 0.00 0.00 34.23 3.86
428 433 3.394836 GGCTGGTCCTCCTCGCTT 61.395 66.667 0.00 0.00 33.63 4.68
1031 1070 2.571548 GAGGACCGAAACCCTCGTA 58.428 57.895 0.00 0.00 46.65 3.43
1032 1071 3.374332 GAGGACCGAAACCCTCGT 58.626 61.111 0.00 0.00 46.65 4.18
1043 1082 0.315568 CAAGATCGGATCGGAGGACC 59.684 60.000 12.08 0.00 0.00 4.46
1044 1083 1.033574 ACAAGATCGGATCGGAGGAC 58.966 55.000 12.08 3.57 0.00 3.85
1047 1117 3.684788 ACAAAAACAAGATCGGATCGGAG 59.315 43.478 12.08 8.66 0.00 4.63
1088 1159 4.230863 AAACACACCACACGCGCG 62.231 61.111 30.96 30.96 0.00 6.86
1089 1160 2.650602 CAAACACACCACACGCGC 60.651 61.111 5.73 0.00 0.00 6.86
1107 1178 2.504026 CTTCTCGTACTGCGCGCA 60.504 61.111 34.12 34.12 41.07 6.09
1108 1179 3.248171 CCTTCTCGTACTGCGCGC 61.248 66.667 27.26 27.26 41.07 6.86
1109 1180 2.152699 CACCTTCTCGTACTGCGCG 61.153 63.158 0.00 0.00 41.07 6.86
1110 1181 1.805945 CCACCTTCTCGTACTGCGC 60.806 63.158 0.00 0.00 41.07 6.09
1179 1250 1.292223 CGATGGTCTCGTTGGTGGT 59.708 57.895 0.00 0.00 42.56 4.16
1315 1386 2.443016 CGGGGTGAGGAGGAGGAG 60.443 72.222 0.00 0.00 0.00 3.69
1348 1445 7.506328 AATAAATAAATCCGGAGCAGGTAAC 57.494 36.000 11.34 0.00 0.00 2.50
1463 1576 0.327591 GGCCATCCATCTCCATCTCC 59.672 60.000 0.00 0.00 0.00 3.71
1464 1577 1.360185 AGGCCATCCATCTCCATCTC 58.640 55.000 5.01 0.00 33.74 2.75
1465 1578 1.704070 GAAGGCCATCCATCTCCATCT 59.296 52.381 5.01 0.00 33.74 2.90
1466 1579 1.610102 CGAAGGCCATCCATCTCCATC 60.610 57.143 5.01 0.00 33.74 3.51
1467 1580 0.399454 CGAAGGCCATCCATCTCCAT 59.601 55.000 5.01 0.00 33.74 3.41
1468 1581 1.832219 CGAAGGCCATCCATCTCCA 59.168 57.895 5.01 0.00 33.74 3.86
1514 1640 5.501897 GCACGTTTCATAGGTTCTAAATCCG 60.502 44.000 0.00 0.00 0.00 4.18
1534 1660 0.526211 TCACTGGCAGTACTAGCACG 59.474 55.000 21.59 5.37 0.00 5.34
1622 1750 0.990374 AATGGGCAGAGCTTCTCAGT 59.010 50.000 0.00 0.00 32.06 3.41
1841 1986 9.236691 GCATAATCATTGATCAATAACAAACGT 57.763 29.630 20.32 3.80 0.00 3.99
1915 2150 2.566833 ACATTACTTGTGCTGCTCCA 57.433 45.000 0.00 0.00 37.11 3.86
1916 2151 3.127030 GGTTACATTACTTGTGCTGCTCC 59.873 47.826 0.00 0.00 39.48 4.70
1917 2152 3.751175 TGGTTACATTACTTGTGCTGCTC 59.249 43.478 0.00 0.00 39.48 4.26
1918 2153 3.750371 TGGTTACATTACTTGTGCTGCT 58.250 40.909 0.00 0.00 39.48 4.24
1919 2154 4.475944 CTTGGTTACATTACTTGTGCTGC 58.524 43.478 0.00 0.00 39.48 5.25
1920 2155 4.082787 CCCTTGGTTACATTACTTGTGCTG 60.083 45.833 0.00 0.00 39.48 4.41
1921 2156 4.079253 CCCTTGGTTACATTACTTGTGCT 58.921 43.478 0.00 0.00 39.48 4.40
1922 2157 4.076394 TCCCTTGGTTACATTACTTGTGC 58.924 43.478 0.00 0.00 39.48 4.57
1923 2158 4.153475 CGTCCCTTGGTTACATTACTTGTG 59.847 45.833 0.00 0.00 39.48 3.33
1924 2159 4.202388 ACGTCCCTTGGTTACATTACTTGT 60.202 41.667 0.00 0.00 42.62 3.16
1925 2160 4.320870 ACGTCCCTTGGTTACATTACTTG 58.679 43.478 0.00 0.00 0.00 3.16
1926 2161 4.285260 AGACGTCCCTTGGTTACATTACTT 59.715 41.667 13.01 0.00 0.00 2.24
1927 2162 3.836562 AGACGTCCCTTGGTTACATTACT 59.163 43.478 13.01 0.00 0.00 2.24
1928 2163 4.081807 AGAGACGTCCCTTGGTTACATTAC 60.082 45.833 13.01 0.00 0.00 1.89
1929 2164 4.091549 AGAGACGTCCCTTGGTTACATTA 58.908 43.478 13.01 0.00 0.00 1.90
1930 2165 2.904434 AGAGACGTCCCTTGGTTACATT 59.096 45.455 13.01 0.00 0.00 2.71
1931 2166 2.537143 AGAGACGTCCCTTGGTTACAT 58.463 47.619 13.01 0.00 0.00 2.29
1932 2167 2.005370 AGAGACGTCCCTTGGTTACA 57.995 50.000 13.01 0.00 0.00 2.41
1933 2168 2.685100 CAAGAGACGTCCCTTGGTTAC 58.315 52.381 26.94 3.32 36.90 2.50
1953 2188 9.216117 ACTGTGATCTATAACAAGTGTAAAACC 57.784 33.333 0.00 0.00 0.00 3.27
1960 2195 8.988064 ACTAACACTGTGATCTATAACAAGTG 57.012 34.615 15.86 0.00 34.47 3.16
2016 2251 3.142174 GCACAACAAAGGAGAGCTAACT 58.858 45.455 0.00 0.00 0.00 2.24
2036 2271 7.095060 TGTCTCTGTCTTGTCTTGAATAATTGC 60.095 37.037 0.00 0.00 0.00 3.56
2158 2948 4.119862 CTGTGCATACTGGTTTACGCTAT 58.880 43.478 0.00 0.00 0.00 2.97
2189 2979 4.929808 CACACAATACAGACAAGGGTACTC 59.070 45.833 0.00 0.00 0.00 2.59
2257 3086 6.161381 ACACGGTACCTCTAAAGTAAACATG 58.839 40.000 10.90 0.00 0.00 3.21
2277 3107 7.259882 TCTTACCATAACAATGTAGGTACACG 58.740 38.462 10.49 4.95 39.30 4.49
2315 3145 5.350914 CAGGAATTCAGCTAGTTCAAGACTG 59.649 44.000 7.93 0.00 39.48 3.51
2360 3190 5.200368 ACAAGCCTGTTTTCCAACTATTG 57.800 39.130 0.00 0.00 33.58 1.90
2368 3198 2.160205 GGGAGTACAAGCCTGTTTTCC 58.840 52.381 8.64 8.64 36.96 3.13
2377 3207 0.108281 GGAACGGAGGGAGTACAAGC 60.108 60.000 0.00 0.00 0.00 4.01
2378 3208 1.558233 AGGAACGGAGGGAGTACAAG 58.442 55.000 0.00 0.00 0.00 3.16
2384 3214 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2386 3216 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2387 3217 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
2404 3234 9.883142 CACCTATTGAAATCTCTAGAAAGACTT 57.117 33.333 0.00 0.00 0.00 3.01
2405 3235 9.261035 TCACCTATTGAAATCTCTAGAAAGACT 57.739 33.333 0.00 0.00 0.00 3.24
2406 3236 9.308318 GTCACCTATTGAAATCTCTAGAAAGAC 57.692 37.037 0.00 0.00 35.39 3.01
2407 3237 9.261035 AGTCACCTATTGAAATCTCTAGAAAGA 57.739 33.333 0.00 0.00 35.39 2.52
2410 3240 9.475620 TGTAGTCACCTATTGAAATCTCTAGAA 57.524 33.333 0.00 0.00 35.39 2.10
2411 3241 9.647918 ATGTAGTCACCTATTGAAATCTCTAGA 57.352 33.333 0.00 0.00 35.39 2.43
2414 3244 8.353684 CGTATGTAGTCACCTATTGAAATCTCT 58.646 37.037 0.00 0.00 35.39 3.10
2415 3245 7.595502 CCGTATGTAGTCACCTATTGAAATCTC 59.404 40.741 0.00 0.00 35.39 2.75
2416 3246 7.287005 TCCGTATGTAGTCACCTATTGAAATCT 59.713 37.037 0.00 0.00 35.39 2.40
2417 3247 7.431249 TCCGTATGTAGTCACCTATTGAAATC 58.569 38.462 0.00 0.00 35.39 2.17
2418 3248 7.356089 TCCGTATGTAGTCACCTATTGAAAT 57.644 36.000 0.00 0.00 35.39 2.17
2419 3249 6.682113 GCTCCGTATGTAGTCACCTATTGAAA 60.682 42.308 0.00 0.00 35.39 2.69
2420 3250 5.221185 GCTCCGTATGTAGTCACCTATTGAA 60.221 44.000 0.00 0.00 35.39 2.69
2421 3251 4.277672 GCTCCGTATGTAGTCACCTATTGA 59.722 45.833 0.00 0.00 0.00 2.57
2422 3252 4.037565 TGCTCCGTATGTAGTCACCTATTG 59.962 45.833 0.00 0.00 0.00 1.90
2423 3253 4.212716 TGCTCCGTATGTAGTCACCTATT 58.787 43.478 0.00 0.00 0.00 1.73
2424 3254 3.828921 TGCTCCGTATGTAGTCACCTAT 58.171 45.455 0.00 0.00 0.00 2.57
2425 3255 3.286329 TGCTCCGTATGTAGTCACCTA 57.714 47.619 0.00 0.00 0.00 3.08
2426 3256 2.139323 TGCTCCGTATGTAGTCACCT 57.861 50.000 0.00 0.00 0.00 4.00
2427 3257 2.953466 TTGCTCCGTATGTAGTCACC 57.047 50.000 0.00 0.00 0.00 4.02
2428 3258 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
2429 3259 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
2430 3260 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
2431 3261 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
2432 3262 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
2433 3263 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
2434 3264 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
2435 3265 4.437390 GGTTCACTCATTTTGCTCCGTATG 60.437 45.833 0.00 0.00 0.00 2.39
2436 3266 3.689649 GGTTCACTCATTTTGCTCCGTAT 59.310 43.478 0.00 0.00 0.00 3.06
2437 3267 3.071479 GGTTCACTCATTTTGCTCCGTA 58.929 45.455 0.00 0.00 0.00 4.02
2438 3268 1.880027 GGTTCACTCATTTTGCTCCGT 59.120 47.619 0.00 0.00 0.00 4.69
2439 3269 2.154462 AGGTTCACTCATTTTGCTCCG 58.846 47.619 0.00 0.00 0.00 4.63
2440 3270 4.072131 TGTAGGTTCACTCATTTTGCTCC 58.928 43.478 0.00 0.00 0.00 4.70
2441 3271 4.757149 AGTGTAGGTTCACTCATTTTGCTC 59.243 41.667 0.00 0.00 44.07 4.26
2442 3272 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
2480 3310 5.597182 AGTGGACTACAACATACGGATGTAT 59.403 40.000 15.10 8.21 45.93 2.29
2481 3311 4.951715 AGTGGACTACAACATACGGATGTA 59.048 41.667 15.10 0.00 45.93 2.29
2483 3313 4.386867 AGTGGACTACAACATACGGATG 57.613 45.455 5.94 5.94 39.16 3.51
2484 3314 4.222145 ACAAGTGGACTACAACATACGGAT 59.778 41.667 0.00 0.00 0.00 4.18
2485 3315 3.575256 ACAAGTGGACTACAACATACGGA 59.425 43.478 0.00 0.00 0.00 4.69
2486 3316 3.921677 ACAAGTGGACTACAACATACGG 58.078 45.455 0.00 0.00 0.00 4.02
2487 3317 6.588756 ACATTACAAGTGGACTACAACATACG 59.411 38.462 0.00 0.00 0.00 3.06
2488 3318 7.817962 AGACATTACAAGTGGACTACAACATAC 59.182 37.037 0.00 0.00 0.00 2.39
2489 3319 7.903145 AGACATTACAAGTGGACTACAACATA 58.097 34.615 0.00 0.00 0.00 2.29
2490 3320 6.769512 AGACATTACAAGTGGACTACAACAT 58.230 36.000 0.00 0.00 0.00 2.71
2491 3321 6.169557 AGACATTACAAGTGGACTACAACA 57.830 37.500 0.00 0.00 0.00 3.33
2492 3322 8.597662 TTTAGACATTACAAGTGGACTACAAC 57.402 34.615 0.00 0.00 0.00 3.32
2493 3323 9.616156 TTTTTAGACATTACAAGTGGACTACAA 57.384 29.630 0.00 0.00 0.00 2.41
2494 3324 9.268268 CTTTTTAGACATTACAAGTGGACTACA 57.732 33.333 0.00 0.00 0.00 2.74
2495 3325 9.485206 TCTTTTTAGACATTACAAGTGGACTAC 57.515 33.333 0.00 0.00 0.00 2.73
2496 3326 9.485206 GTCTTTTTAGACATTACAAGTGGACTA 57.515 33.333 0.00 0.00 38.59 2.59
2497 3327 8.211629 AGTCTTTTTAGACATTACAAGTGGACT 58.788 33.333 7.92 0.00 41.02 3.85
2498 3328 8.379457 AGTCTTTTTAGACATTACAAGTGGAC 57.621 34.615 7.92 0.00 41.02 4.02
2499 3329 8.974060 AAGTCTTTTTAGACATTACAAGTGGA 57.026 30.769 7.92 0.00 41.02 4.02
2511 3341 9.897349 CGTTCCGAAATATAAGTCTTTTTAGAC 57.103 33.333 0.00 0.00 39.00 2.59
2512 3342 9.090692 CCGTTCCGAAATATAAGTCTTTTTAGA 57.909 33.333 0.00 0.00 0.00 2.10
2513 3343 9.090692 TCCGTTCCGAAATATAAGTCTTTTTAG 57.909 33.333 0.00 0.00 0.00 1.85
2514 3344 9.090692 CTCCGTTCCGAAATATAAGTCTTTTTA 57.909 33.333 0.00 0.00 0.00 1.52
2515 3345 7.065443 CCTCCGTTCCGAAATATAAGTCTTTTT 59.935 37.037 0.00 0.00 0.00 1.94
2516 3346 6.537660 CCTCCGTTCCGAAATATAAGTCTTTT 59.462 38.462 0.00 0.00 0.00 2.27
2517 3347 6.047231 CCTCCGTTCCGAAATATAAGTCTTT 58.953 40.000 0.00 0.00 0.00 2.52
2518 3348 5.452917 CCCTCCGTTCCGAAATATAAGTCTT 60.453 44.000 0.00 0.00 0.00 3.01
2519 3349 4.038883 CCCTCCGTTCCGAAATATAAGTCT 59.961 45.833 0.00 0.00 0.00 3.24
2520 3350 4.038402 TCCCTCCGTTCCGAAATATAAGTC 59.962 45.833 0.00 0.00 0.00 3.01
2521 3351 3.962718 TCCCTCCGTTCCGAAATATAAGT 59.037 43.478 0.00 0.00 0.00 2.24
2522 3352 4.038883 ACTCCCTCCGTTCCGAAATATAAG 59.961 45.833 0.00 0.00 0.00 1.73
2523 3353 3.962718 ACTCCCTCCGTTCCGAAATATAA 59.037 43.478 0.00 0.00 0.00 0.98
2524 3354 3.569491 ACTCCCTCCGTTCCGAAATATA 58.431 45.455 0.00 0.00 0.00 0.86
2525 3355 2.395619 ACTCCCTCCGTTCCGAAATAT 58.604 47.619 0.00 0.00 0.00 1.28
2526 3356 1.856629 ACTCCCTCCGTTCCGAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2527 3357 1.856629 TACTCCCTCCGTTCCGAAAT 58.143 50.000 0.00 0.00 0.00 2.17
2528 3358 1.856629 ATACTCCCTCCGTTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
2529 3359 1.856629 AATACTCCCTCCGTTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
2530 3360 1.479323 CAAATACTCCCTCCGTTCCGA 59.521 52.381 0.00 0.00 0.00 4.55
2531 3361 1.479323 TCAAATACTCCCTCCGTTCCG 59.521 52.381 0.00 0.00 0.00 4.30
2532 3362 3.840124 ATCAAATACTCCCTCCGTTCC 57.160 47.619 0.00 0.00 0.00 3.62
2533 3363 5.429130 AGAAATCAAATACTCCCTCCGTTC 58.571 41.667 0.00 0.00 0.00 3.95
2534 3364 5.437191 AGAAATCAAATACTCCCTCCGTT 57.563 39.130 0.00 0.00 0.00 4.44
2535 3365 5.424252 TGTAGAAATCAAATACTCCCTCCGT 59.576 40.000 0.00 0.00 0.00 4.69
2536 3366 5.914033 TGTAGAAATCAAATACTCCCTCCG 58.086 41.667 0.00 0.00 0.00 4.63
2537 3367 7.125792 TCTGTAGAAATCAAATACTCCCTCC 57.874 40.000 0.00 0.00 0.00 4.30
2538 3368 7.172361 GCATCTGTAGAAATCAAATACTCCCTC 59.828 40.741 0.00 0.00 0.00 4.30
2539 3369 6.995091 GCATCTGTAGAAATCAAATACTCCCT 59.005 38.462 0.00 0.00 0.00 4.20
2540 3370 6.767902 TGCATCTGTAGAAATCAAATACTCCC 59.232 38.462 0.00 0.00 0.00 4.30
2541 3371 7.792374 TGCATCTGTAGAAATCAAATACTCC 57.208 36.000 0.00 0.00 0.00 3.85
2542 3372 9.661187 CATTGCATCTGTAGAAATCAAATACTC 57.339 33.333 0.00 0.00 0.00 2.59
2543 3373 9.182214 ACATTGCATCTGTAGAAATCAAATACT 57.818 29.630 0.84 0.00 0.00 2.12
2544 3374 9.793252 AACATTGCATCTGTAGAAATCAAATAC 57.207 29.630 3.14 0.00 0.00 1.89
2549 3379 9.791820 CAATAAACATTGCATCTGTAGAAATCA 57.208 29.630 3.14 0.00 0.00 2.57
2550 3380 9.793252 ACAATAAACATTGCATCTGTAGAAATC 57.207 29.630 3.14 0.00 35.04 2.17
2552 3382 9.409312 CAACAATAAACATTGCATCTGTAGAAA 57.591 29.630 3.14 0.00 35.04 2.52
2553 3383 8.028354 CCAACAATAAACATTGCATCTGTAGAA 58.972 33.333 3.14 0.00 35.04 2.10
2554 3384 7.392953 TCCAACAATAAACATTGCATCTGTAGA 59.607 33.333 3.14 0.00 35.04 2.59
2555 3385 7.537715 TCCAACAATAAACATTGCATCTGTAG 58.462 34.615 3.14 0.00 35.04 2.74
2556 3386 7.459795 TCCAACAATAAACATTGCATCTGTA 57.540 32.000 3.14 0.00 35.04 2.74
2557 3387 6.343716 TCCAACAATAAACATTGCATCTGT 57.656 33.333 0.00 0.00 35.04 3.41
2558 3388 7.655236 TTTCCAACAATAAACATTGCATCTG 57.345 32.000 0.00 0.00 35.04 2.90
2559 3389 7.879160 ACATTTCCAACAATAAACATTGCATCT 59.121 29.630 0.00 0.00 35.04 2.90
2560 3390 8.031848 ACATTTCCAACAATAAACATTGCATC 57.968 30.769 0.00 0.00 35.04 3.91
2628 3459 6.990349 CCAGTTTATAACGATGGTGATAACCT 59.010 38.462 0.00 0.00 30.63 3.50
2630 3461 6.293244 GCCCAGTTTATAACGATGGTGATAAC 60.293 42.308 0.00 0.00 30.63 1.89
2636 3467 2.422377 GGGCCCAGTTTATAACGATGGT 60.422 50.000 19.95 0.00 36.23 3.55
2637 3468 2.227194 GGGCCCAGTTTATAACGATGG 58.773 52.381 19.95 3.71 36.23 3.51
2640 3471 1.065272 GGTGGGCCCAGTTTATAACGA 60.065 52.381 29.55 0.00 36.23 3.85
2641 3472 1.340211 TGGTGGGCCCAGTTTATAACG 60.340 52.381 29.55 0.00 38.72 3.18
2657 3488 7.894376 AAGATTGCAACAATTTATTCTGGTG 57.106 32.000 0.00 0.00 33.19 4.17
2669 3500 9.017509 AGATGAAATAGAGAAAGATTGCAACAA 57.982 29.630 0.00 0.00 0.00 2.83
2670 3501 8.456471 CAGATGAAATAGAGAAAGATTGCAACA 58.544 33.333 0.00 0.00 0.00 3.33
2671 3502 7.431668 GCAGATGAAATAGAGAAAGATTGCAAC 59.568 37.037 0.00 0.00 0.00 4.17
2673 3504 6.827251 AGCAGATGAAATAGAGAAAGATTGCA 59.173 34.615 0.00 0.00 0.00 4.08
2674 3505 7.261829 AGCAGATGAAATAGAGAAAGATTGC 57.738 36.000 0.00 0.00 0.00 3.56
2689 3520 8.030692 CAGAAATTCCAACATTAAGCAGATGAA 58.969 33.333 1.64 0.00 0.00 2.57
2691 3522 7.487189 GTCAGAAATTCCAACATTAAGCAGATG 59.513 37.037 0.00 0.00 0.00 2.90
2705 3536 4.154737 CGCTTTGAGATGTCAGAAATTCCA 59.845 41.667 0.00 0.00 32.98 3.53
2717 3548 2.417933 CTCCAACCTTCGCTTTGAGATG 59.582 50.000 0.00 0.00 0.00 2.90
2723 3554 2.640316 AGAACTCCAACCTTCGCTTT 57.360 45.000 0.00 0.00 0.00 3.51
2727 3558 5.298527 AGGTTAAAAAGAACTCCAACCTTCG 59.701 40.000 0.00 0.00 42.30 3.79
2731 3562 5.358725 TGACAGGTTAAAAAGAACTCCAACC 59.641 40.000 0.00 0.00 36.50 3.77
2732 3563 6.263344 GTGACAGGTTAAAAAGAACTCCAAC 58.737 40.000 0.00 0.00 0.00 3.77
2752 3583 9.159364 TGTAGTGTATCCATACTATATCGTGAC 57.841 37.037 0.00 0.00 31.87 3.67
2753 3584 9.379791 CTGTAGTGTATCCATACTATATCGTGA 57.620 37.037 0.00 0.00 31.87 4.35
2754 3585 8.613482 CCTGTAGTGTATCCATACTATATCGTG 58.387 40.741 0.00 0.00 31.87 4.35
2755 3586 8.546322 TCCTGTAGTGTATCCATACTATATCGT 58.454 37.037 0.00 0.00 31.87 3.73
2756 3587 8.959705 TCCTGTAGTGTATCCATACTATATCG 57.040 38.462 0.00 0.00 31.87 2.92
2757 3588 8.842280 GCTCCTGTAGTGTATCCATACTATATC 58.158 40.741 0.00 0.00 31.87 1.63
2759 3590 7.696017 TGCTCCTGTAGTGTATCCATACTATA 58.304 38.462 0.00 0.00 31.87 1.31
2760 3591 6.552932 TGCTCCTGTAGTGTATCCATACTAT 58.447 40.000 0.00 0.00 31.87 2.12
2761 3592 5.948842 TGCTCCTGTAGTGTATCCATACTA 58.051 41.667 0.00 0.00 34.41 1.82
2763 3594 4.827835 TCTGCTCCTGTAGTGTATCCATAC 59.172 45.833 0.00 0.00 0.00 2.39
2764 3595 5.061721 TCTGCTCCTGTAGTGTATCCATA 57.938 43.478 0.00 0.00 0.00 2.74
2777 3630 5.498393 AGCAATATGGATTATCTGCTCCTG 58.502 41.667 0.87 0.00 33.32 3.86
2782 3635 7.826252 TCCTAGAAAGCAATATGGATTATCTGC 59.174 37.037 0.00 0.00 0.00 4.26
2785 3638 9.160496 CAGTCCTAGAAAGCAATATGGATTATC 57.840 37.037 0.00 0.00 0.00 1.75
2787 3640 6.936900 GCAGTCCTAGAAAGCAATATGGATTA 59.063 38.462 0.00 0.00 0.00 1.75
2792 3645 4.712476 AGGCAGTCCTAGAAAGCAATATG 58.288 43.478 0.00 0.00 42.06 1.78
2794 3647 4.517285 CAAGGCAGTCCTAGAAAGCAATA 58.483 43.478 0.00 0.00 43.40 1.90
2821 3674 4.500887 GCCAGCTATCATGTTCGGTACTAA 60.501 45.833 0.00 0.00 0.00 2.24
2834 3687 2.847327 GCTCCATTAGCCAGCTATCA 57.153 50.000 0.00 0.00 46.25 2.15
2855 3711 9.083422 CAGTACATCTAATTTGAGGAGGAGATA 57.917 37.037 8.50 0.00 0.00 1.98
2917 3773 8.629158 AGCAGTGAAGACATGTTTTATTTACAA 58.371 29.630 0.00 0.00 0.00 2.41
2934 3790 1.183549 ACCTACCGGTAGCAGTGAAG 58.816 55.000 32.43 20.25 43.29 3.02
2942 3798 2.467566 AGCAACAAACCTACCGGTAG 57.532 50.000 31.17 31.17 44.73 3.18
2996 3852 4.265856 TGGAGATCATACAGTACTGGGT 57.734 45.455 26.12 11.74 34.19 4.51
3052 3908 7.878127 AGTTCTGTGTGCAGTAAATAGTTACAT 59.122 33.333 14.90 0.00 41.88 2.29
3074 3930 3.334583 TGAAGGACATAGTGCCAGTTC 57.665 47.619 0.00 0.00 0.00 3.01
3085 3941 7.506114 TGTAAGAAGTGTTAGTTGAAGGACAT 58.494 34.615 0.00 0.00 0.00 3.06
3111 3967 1.607467 AAAGACCACAGGCCATGGC 60.607 57.895 29.47 29.47 41.31 4.40
3132 3988 5.438761 AGAAATGCACCAACTACTTTGAC 57.561 39.130 0.00 0.00 37.39 3.18
3181 4037 7.201821 GCAATACTATAATGCCAAGAAACAGGT 60.202 37.037 0.00 0.00 34.03 4.00
3185 4041 7.141363 CCTGCAATACTATAATGCCAAGAAAC 58.859 38.462 0.00 0.00 39.31 2.78
3188 4044 5.940617 ACCTGCAATACTATAATGCCAAGA 58.059 37.500 0.00 0.00 39.31 3.02
3189 4045 7.744087 TTACCTGCAATACTATAATGCCAAG 57.256 36.000 0.00 0.00 39.31 3.61
3199 4055 9.595823 GAAACTCTAACATTACCTGCAATACTA 57.404 33.333 0.00 0.00 0.00 1.82
3200 4056 7.553044 GGAAACTCTAACATTACCTGCAATACT 59.447 37.037 0.00 0.00 0.00 2.12
3201 4057 7.553044 AGGAAACTCTAACATTACCTGCAATAC 59.447 37.037 0.00 0.00 32.90 1.89
3202 4058 7.630082 AGGAAACTCTAACATTACCTGCAATA 58.370 34.615 0.00 0.00 32.90 1.90
3203 4059 6.485171 AGGAAACTCTAACATTACCTGCAAT 58.515 36.000 0.00 0.00 32.90 3.56
3205 4061 5.499004 AGGAAACTCTAACATTACCTGCA 57.501 39.130 0.00 0.00 32.90 4.41
3206 4062 6.877322 TGTAAGGAAACTCTAACATTACCTGC 59.123 38.462 0.00 0.00 42.68 4.85
3207 4063 8.842358 TTGTAAGGAAACTCTAACATTACCTG 57.158 34.615 0.00 0.00 42.68 4.00
3247 4103 6.417635 CGTTTGATCTAAAATGTGTTGCAAGT 59.582 34.615 0.00 0.00 0.00 3.16
3248 4104 6.636447 TCGTTTGATCTAAAATGTGTTGCAAG 59.364 34.615 0.00 0.00 0.00 4.01
3249 4105 6.499172 TCGTTTGATCTAAAATGTGTTGCAA 58.501 32.000 0.00 0.00 0.00 4.08
3250 4106 6.066054 TCGTTTGATCTAAAATGTGTTGCA 57.934 33.333 0.00 0.00 0.00 4.08
3251 4107 6.984740 TTCGTTTGATCTAAAATGTGTTGC 57.015 33.333 0.00 0.00 0.00 4.17
3252 4108 8.967218 ACAATTCGTTTGATCTAAAATGTGTTG 58.033 29.630 7.65 5.61 38.76 3.33
3270 4126 9.444600 AACTTCATGTTTACCTATACAATTCGT 57.555 29.630 0.00 0.00 34.84 3.85
3271 4127 9.916397 GAACTTCATGTTTACCTATACAATTCG 57.084 33.333 0.00 0.00 39.30 3.34
3334 4190 7.549134 TGGTGCTATATTTTGTTACTCTCTGTG 59.451 37.037 0.00 0.00 0.00 3.66
3335 4191 7.620880 TGGTGCTATATTTTGTTACTCTCTGT 58.379 34.615 0.00 0.00 0.00 3.41
3346 4202 5.126061 AGGCTTGAACTGGTGCTATATTTTG 59.874 40.000 0.00 0.00 0.00 2.44
3347 4203 5.264395 AGGCTTGAACTGGTGCTATATTTT 58.736 37.500 0.00 0.00 0.00 1.82
3355 4211 1.006922 GCAAGGCTTGAACTGGTGC 60.007 57.895 30.45 9.69 0.00 5.01
3359 4215 4.978083 ATAAGATGCAAGGCTTGAACTG 57.022 40.909 30.45 4.96 0.00 3.16
3363 4219 4.221262 AGCAAAATAAGATGCAAGGCTTGA 59.779 37.500 30.45 15.56 44.95 3.02
3369 4225 6.790285 AAAACCAGCAAAATAAGATGCAAG 57.210 33.333 0.00 0.00 44.95 4.01
3388 4244 4.454728 TGCTTGAATGGAGGCATAAAAC 57.545 40.909 0.00 0.00 0.00 2.43
3395 4251 4.280174 ACATGAATATGCTTGAATGGAGGC 59.720 41.667 0.00 0.00 37.85 4.70
3399 4255 6.262496 AGTCAGACATGAATATGCTTGAATGG 59.738 38.462 0.00 0.00 37.14 3.16
3401 4257 7.052248 TGAGTCAGACATGAATATGCTTGAAT 58.948 34.615 0.00 0.00 37.14 2.57
3430 4286 2.671396 CACGCAATACAGACAAGGGTAC 59.329 50.000 0.00 0.00 0.00 3.34
3433 4289 0.447801 GCACGCAATACAGACAAGGG 59.552 55.000 0.00 0.00 0.00 3.95
3434 4290 1.135972 GTGCACGCAATACAGACAAGG 60.136 52.381 0.00 0.00 0.00 3.61
3448 4304 4.782156 TCAACAATGAACTAATGTGCACG 58.218 39.130 13.13 0.00 33.95 5.34
3469 4325 4.037690 GTGACATTCAGTGCAACAAGTTC 58.962 43.478 0.00 0.00 41.43 3.01
3505 4361 4.818642 CCCAAACATCACAATGTGCATAA 58.181 39.130 8.78 0.00 45.48 1.90
3514 4370 7.505248 ACATACATATATGCCCAAACATCACAA 59.495 33.333 12.79 0.00 41.83 3.33
3567 4423 6.367969 GTCGAATCTTACCACAACAATGTAGT 59.632 38.462 0.00 0.00 37.82 2.73
3587 4443 8.198109 AGCTAGCTCAAGAATAATAAAGTCGAA 58.802 33.333 12.68 0.00 0.00 3.71
3589 4445 7.938563 AGCTAGCTCAAGAATAATAAAGTCG 57.061 36.000 12.68 0.00 0.00 4.18
3607 4463 3.206964 GTTGGGACAGGAATTAGCTAGC 58.793 50.000 6.62 6.62 42.39 3.42
3620 4476 6.968263 TTCATTTTAACATCTGTTGGGACA 57.032 33.333 5.84 0.00 38.90 4.02
3621 4477 8.739972 ACTATTCATTTTAACATCTGTTGGGAC 58.260 33.333 5.84 0.00 38.90 4.46
3623 4479 9.927668 AAACTATTCATTTTAACATCTGTTGGG 57.072 29.630 5.84 0.00 38.90 4.12
3636 4492 9.252962 CAGCTCTGTTTTCAAACTATTCATTTT 57.747 29.630 4.14 0.00 39.59 1.82
3637 4493 8.416329 ACAGCTCTGTTTTCAAACTATTCATTT 58.584 29.630 4.14 0.00 41.83 2.32
3638 4494 7.864379 CACAGCTCTGTTTTCAAACTATTCATT 59.136 33.333 0.00 0.00 42.83 2.57
3639 4495 7.013655 ACACAGCTCTGTTTTCAAACTATTCAT 59.986 33.333 0.00 0.00 42.83 2.57
3640 4496 6.318648 ACACAGCTCTGTTTTCAAACTATTCA 59.681 34.615 0.00 0.00 42.83 2.57
3641 4497 6.729187 ACACAGCTCTGTTTTCAAACTATTC 58.271 36.000 0.00 0.00 42.83 1.75
3642 4498 6.699575 ACACAGCTCTGTTTTCAAACTATT 57.300 33.333 0.00 0.00 42.83 1.73
3643 4499 6.699575 AACACAGCTCTGTTTTCAAACTAT 57.300 33.333 0.98 0.00 42.83 2.12
3644 4500 6.321717 CAAACACAGCTCTGTTTTCAAACTA 58.678 36.000 16.35 0.00 41.47 2.24
3645 4501 5.163513 CAAACACAGCTCTGTTTTCAAACT 58.836 37.500 16.35 0.00 41.47 2.66
3646 4502 4.201618 GCAAACACAGCTCTGTTTTCAAAC 60.202 41.667 16.35 2.47 41.47 2.93
3680 4536 7.096640 CGACTACATTTCCAACAACAAACATTC 60.097 37.037 0.00 0.00 0.00 2.67
3682 4538 6.183360 ACGACTACATTTCCAACAACAAACAT 60.183 34.615 0.00 0.00 0.00 2.71
3704 4560 8.772705 ACGGTTACATTTGTAAAAGAAATACGA 58.227 29.630 4.79 0.00 41.58 3.43
3705 4561 8.938047 ACGGTTACATTTGTAAAAGAAATACG 57.062 30.769 4.79 0.00 41.58 3.06
3715 4571 8.188799 TGAACATTGAAACGGTTACATTTGTAA 58.811 29.630 0.00 0.00 38.10 2.41
3745 4601 8.560374 GCCCAGTTAATAACAGTGAAGATAATC 58.440 37.037 5.89 0.00 0.00 1.75
3749 4605 5.193679 GGCCCAGTTAATAACAGTGAAGAT 58.806 41.667 5.89 0.00 0.00 2.40
3757 4613 3.527507 TGGTTGGCCCAGTTAATAACA 57.472 42.857 0.00 0.00 38.72 2.41
3763 4619 5.799213 CATTTATTTTGGTTGGCCCAGTTA 58.201 37.500 0.00 0.00 46.31 2.24
3921 4777 8.894768 AAGCAATACTGATTATCTGTTCCTAC 57.105 34.615 9.87 0.00 31.00 3.18
3938 4794 3.782046 TCGCAGTCCTAGAAAGCAATAC 58.218 45.455 0.00 0.00 0.00 1.89
3949 4805 0.185175 TAGAGCCCATCGCAGTCCTA 59.815 55.000 0.00 0.00 41.38 2.94
3958 4814 3.432326 CCTGTTTGGTACTAGAGCCCATC 60.432 52.174 0.00 0.00 0.00 3.51
3959 4815 2.505819 CCTGTTTGGTACTAGAGCCCAT 59.494 50.000 0.00 0.00 0.00 4.00
3973 4829 1.386533 CTGGCCAGCTATCCTGTTTG 58.613 55.000 22.33 0.00 40.06 2.93
3974 4830 3.890527 CTGGCCAGCTATCCTGTTT 57.109 52.632 22.33 0.00 40.06 2.83
4012 4874 5.065704 AGAGTGTTGCACAGTACATCTAG 57.934 43.478 0.00 0.00 36.74 2.43
4025 4887 3.467803 ACTGTGGAGTAAAGAGTGTTGC 58.532 45.455 0.00 0.00 0.00 4.17
4037 4899 1.717032 TGCAGGAGTTACTGTGGAGT 58.283 50.000 0.00 0.00 40.59 3.85
4041 4903 1.802960 CAGCTTGCAGGAGTTACTGTG 59.197 52.381 0.00 0.00 40.59 3.66
4043 4905 2.175878 ACAGCTTGCAGGAGTTACTG 57.824 50.000 0.00 0.00 41.41 2.74
4044 4906 4.351874 TTTACAGCTTGCAGGAGTTACT 57.648 40.909 0.00 0.00 0.00 2.24
4089 4960 9.378551 TCATTTATAGCAACAAACTACCTACTG 57.621 33.333 0.00 0.00 0.00 2.74
4095 4966 7.973388 TGCCAATCATTTATAGCAACAAACTAC 59.027 33.333 0.00 0.00 0.00 2.73
4096 4967 8.060931 TGCCAATCATTTATAGCAACAAACTA 57.939 30.769 0.00 0.00 0.00 2.24
4097 4968 6.934056 TGCCAATCATTTATAGCAACAAACT 58.066 32.000 0.00 0.00 0.00 2.66
4234 5105 3.694072 TGTCAGAAGTGTTTGTTGAAGGG 59.306 43.478 0.00 0.00 0.00 3.95
4313 5184 7.435488 CCAACGAACAGGTAATACTAATCAGAG 59.565 40.741 0.00 0.00 0.00 3.35
4420 5291 5.068329 TGTTGCATGAACTTGATGTTTACCA 59.932 36.000 0.00 0.00 39.30 3.25
4587 5459 6.155221 AGTCACATACTCACATACCAAGATGT 59.845 38.462 0.00 0.00 40.78 3.06
4812 5687 5.394115 GGCCCCATGTAAACAAGTAATGAAG 60.394 44.000 0.00 0.00 0.00 3.02
4813 5688 4.464597 GGCCCCATGTAAACAAGTAATGAA 59.535 41.667 0.00 0.00 0.00 2.57
4815 5690 3.766591 TGGCCCCATGTAAACAAGTAATG 59.233 43.478 0.00 0.00 0.00 1.90
4816 5691 4.054359 TGGCCCCATGTAAACAAGTAAT 57.946 40.909 0.00 0.00 0.00 1.89
4891 5768 5.996219 TGCAAAATCACATGTACACACTAC 58.004 37.500 0.00 0.00 0.00 2.73
4894 5771 5.702865 AGATGCAAAATCACATGTACACAC 58.297 37.500 0.00 0.00 0.00 3.82
4935 5812 7.289310 TGTGGCATGAAATTGGATAGATAGAA 58.711 34.615 0.00 0.00 0.00 2.10
4936 5813 6.840527 TGTGGCATGAAATTGGATAGATAGA 58.159 36.000 0.00 0.00 0.00 1.98
4937 5814 7.392393 TGATGTGGCATGAAATTGGATAGATAG 59.608 37.037 0.00 0.00 0.00 2.08
5130 6007 8.779354 ATCCGAACCTGAATATCTTAAATAGC 57.221 34.615 0.00 0.00 0.00 2.97
5158 6035 1.558167 TTGAATAGGAGGGCGTGGCA 61.558 55.000 0.00 0.00 0.00 4.92
5209 6090 3.314913 ACGCAACACACAAATCAGATGAA 59.685 39.130 0.00 0.00 0.00 2.57
5292 6173 2.038557 GGACTTGTAGTCAGGCAAGGAA 59.961 50.000 8.89 0.00 46.79 3.36
5445 6326 0.322008 GGTTGCAAGGTCCTGGAGAG 60.322 60.000 0.00 0.00 0.00 3.20
5527 6408 1.404035 CATGATGTCCACGGTCGTAGA 59.596 52.381 0.00 0.00 0.00 2.59
5668 6554 0.251354 CCACATAGCCAGCTCACTGT 59.749 55.000 0.00 0.00 42.81 3.55
5678 6564 1.473434 GCCAGTCACTACCACATAGCC 60.473 57.143 0.00 0.00 33.73 3.93
5967 6858 0.683179 GAATTTTGGGACGGAGGGGG 60.683 60.000 0.00 0.00 0.00 5.40
5968 6859 0.331616 AGAATTTTGGGACGGAGGGG 59.668 55.000 0.00 0.00 0.00 4.79
5969 6860 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
5970 6861 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
5971 6862 3.146066 TGACAAGAATTTTGGGACGGAG 58.854 45.455 0.00 0.00 0.00 4.63
5972 6863 3.216187 TGACAAGAATTTTGGGACGGA 57.784 42.857 0.00 0.00 0.00 4.69
5973 6864 3.638484 GTTGACAAGAATTTTGGGACGG 58.362 45.455 0.00 0.00 0.00 4.79
5974 6865 3.242936 ACGTTGACAAGAATTTTGGGACG 60.243 43.478 15.10 15.10 33.05 4.79
5975 6866 4.041723 CACGTTGACAAGAATTTTGGGAC 58.958 43.478 0.00 0.00 0.00 4.46
5976 6867 3.948473 TCACGTTGACAAGAATTTTGGGA 59.052 39.130 0.00 0.00 0.00 4.37
5977 6868 4.041723 GTCACGTTGACAAGAATTTTGGG 58.958 43.478 11.62 0.00 46.22 4.12
5988 6879 9.439994 ATACGGATGTATCAAGTCACGTTGACA 62.440 40.741 16.74 2.47 42.32 3.58
5989 6880 7.168581 ATACGGATGTATCAAGTCACGTTGAC 61.169 42.308 9.30 9.30 41.18 3.18
5990 6881 3.057104 ACGGATGTATCAAGTCACGTTGA 60.057 43.478 0.00 0.00 40.68 3.18
5991 6882 3.250744 ACGGATGTATCAAGTCACGTTG 58.749 45.455 0.00 0.00 0.00 4.10
5992 6883 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
5993 6884 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
5994 6885 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
5995 6886 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
5996 6887 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
5997 6888 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
5998 6889 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
6005 6896 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
6006 6897 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
6008 6899 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
6009 6900 8.818057 CCTTGTCTTAGATTTGTCTAAATACGG 58.182 37.037 0.26 0.00 36.66 4.02
6010 6901 9.582431 TCCTTGTCTTAGATTTGTCTAAATACG 57.418 33.333 0.26 0.00 36.66 3.06
6016 6907 9.231297 CCAAAATCCTTGTCTTAGATTTGTCTA 57.769 33.333 0.00 0.00 39.51 2.59
6017 6908 7.177392 CCCAAAATCCTTGTCTTAGATTTGTCT 59.823 37.037 0.00 0.00 39.51 3.41
6018 6909 7.176690 TCCCAAAATCCTTGTCTTAGATTTGTC 59.823 37.037 0.00 0.00 39.51 3.18
6019 6910 7.010160 TCCCAAAATCCTTGTCTTAGATTTGT 58.990 34.615 0.00 0.00 39.51 2.83
6020 6911 7.315890 GTCCCAAAATCCTTGTCTTAGATTTG 58.684 38.462 0.00 0.00 39.51 2.32
6021 6912 6.151144 CGTCCCAAAATCCTTGTCTTAGATTT 59.849 38.462 0.00 0.00 40.92 2.17
6022 6913 5.648092 CGTCCCAAAATCCTTGTCTTAGATT 59.352 40.000 0.00 0.00 0.00 2.40
6023 6914 5.186198 CGTCCCAAAATCCTTGTCTTAGAT 58.814 41.667 0.00 0.00 0.00 1.98
6024 6915 4.564821 CCGTCCCAAAATCCTTGTCTTAGA 60.565 45.833 0.00 0.00 0.00 2.10
6025 6916 3.689649 CCGTCCCAAAATCCTTGTCTTAG 59.310 47.826 0.00 0.00 0.00 2.18
6026 6917 3.328343 TCCGTCCCAAAATCCTTGTCTTA 59.672 43.478 0.00 0.00 0.00 2.10
6027 6918 2.107552 TCCGTCCCAAAATCCTTGTCTT 59.892 45.455 0.00 0.00 0.00 3.01
6028 6919 1.702957 TCCGTCCCAAAATCCTTGTCT 59.297 47.619 0.00 0.00 0.00 3.41
6029 6920 2.084546 CTCCGTCCCAAAATCCTTGTC 58.915 52.381 0.00 0.00 0.00 3.18
6030 6921 1.271926 CCTCCGTCCCAAAATCCTTGT 60.272 52.381 0.00 0.00 0.00 3.16
6031 6922 1.463674 CCTCCGTCCCAAAATCCTTG 58.536 55.000 0.00 0.00 0.00 3.61
6032 6923 0.331616 CCCTCCGTCCCAAAATCCTT 59.668 55.000 0.00 0.00 0.00 3.36
6033 6924 0.549169 TCCCTCCGTCCCAAAATCCT 60.549 55.000 0.00 0.00 0.00 3.24
6034 6925 0.107165 CTCCCTCCGTCCCAAAATCC 60.107 60.000 0.00 0.00 0.00 3.01
6035 6926 0.618981 ACTCCCTCCGTCCCAAAATC 59.381 55.000 0.00 0.00 0.00 2.17
6036 6927 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
6037 6928 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
6038 6929 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
6039 6930 0.178926 TTGTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
6040 6931 0.901580 GTTGTACTCCCTCCGTCCCA 60.902 60.000 0.00 0.00 0.00 4.37
6041 6932 1.895966 GTTGTACTCCCTCCGTCCC 59.104 63.158 0.00 0.00 0.00 4.46
6042 6933 1.509923 CGTTGTACTCCCTCCGTCC 59.490 63.158 0.00 0.00 0.00 4.79
6043 6934 1.509923 CCGTTGTACTCCCTCCGTC 59.490 63.158 0.00 0.00 0.00 4.79
6044 6935 1.980772 CCCGTTGTACTCCCTCCGT 60.981 63.158 0.00 0.00 0.00 4.69
6045 6936 2.890371 CCCGTTGTACTCCCTCCG 59.110 66.667 0.00 0.00 0.00 4.63
6046 6937 1.988406 AGCCCGTTGTACTCCCTCC 60.988 63.158 0.00 0.00 0.00 4.30
6047 6938 1.218316 CAGCCCGTTGTACTCCCTC 59.782 63.158 0.00 0.00 0.00 4.30
6048 6939 2.955881 GCAGCCCGTTGTACTCCCT 61.956 63.158 0.00 0.00 0.00 4.20
6049 6940 2.436115 GCAGCCCGTTGTACTCCC 60.436 66.667 0.00 0.00 0.00 4.30
6050 6941 2.813908 CGCAGCCCGTTGTACTCC 60.814 66.667 0.00 0.00 0.00 3.85
6131 7022 5.873179 TTTTTCTAGAACGGCCACATAAG 57.127 39.130 4.18 0.00 0.00 1.73
6176 7067 4.519540 ACAAATCCACAGCGCTAAATTT 57.480 36.364 10.99 10.84 0.00 1.82
6177 7068 4.457603 TGTACAAATCCACAGCGCTAAATT 59.542 37.500 10.99 4.70 0.00 1.82
6182 7073 1.739466 CATGTACAAATCCACAGCGCT 59.261 47.619 2.64 2.64 0.00 5.92
6183 7074 1.468520 ACATGTACAAATCCACAGCGC 59.531 47.619 0.00 0.00 0.00 5.92
6353 7527 8.792633 CAACAAAGAGGTTTGAGTGGATTATTA 58.207 33.333 4.91 0.00 45.22 0.98
6400 7581 9.341899 GTGATTTGGAGTAATGTTTGATAACAC 57.658 33.333 0.00 0.00 46.38 3.32
6415 7596 3.167485 TGTACCCTACGTGATTTGGAGT 58.833 45.455 0.00 0.00 0.00 3.85
6416 7597 3.880047 TGTACCCTACGTGATTTGGAG 57.120 47.619 0.00 0.00 0.00 3.86
6517 7738 1.276859 ATGGTACCCCCTTCGTTCCC 61.277 60.000 10.07 0.00 0.00 3.97
6518 7739 0.179702 GATGGTACCCCCTTCGTTCC 59.820 60.000 10.07 0.00 0.00 3.62
6524 7774 4.577096 TGATTATGAGATGGTACCCCCTT 58.423 43.478 10.07 0.00 0.00 3.95
6529 7779 8.778358 GTCTTTGATTGATTATGAGATGGTACC 58.222 37.037 4.43 4.43 0.00 3.34
6538 7788 8.358895 TGCTTTTGTGTCTTTGATTGATTATGA 58.641 29.630 0.00 0.00 0.00 2.15
6539 7789 8.523523 TGCTTTTGTGTCTTTGATTGATTATG 57.476 30.769 0.00 0.00 0.00 1.90
6553 7803 6.749118 GGAACATGATCTTATGCTTTTGTGTC 59.251 38.462 0.00 0.00 0.00 3.67
6554 7804 6.623549 CGGAACATGATCTTATGCTTTTGTGT 60.624 38.462 0.00 0.00 0.00 3.72
6555 7805 5.740569 CGGAACATGATCTTATGCTTTTGTG 59.259 40.000 0.00 0.00 0.00 3.33
6577 7827 6.153510 TCTGATCTCTATGGATTTGATACCGG 59.846 42.308 0.00 0.00 0.00 5.28
6580 7830 9.421806 CAGTTCTGATCTCTATGGATTTGATAC 57.578 37.037 0.00 0.00 0.00 2.24
6585 7835 6.497624 AGCAGTTCTGATCTCTATGGATTT 57.502 37.500 3.84 0.00 0.00 2.17
6618 7872 4.569943 TGAGTGTGTCCATCTCTTTTAGC 58.430 43.478 0.00 0.00 0.00 3.09
6631 7885 6.420604 CCATTTACAAACCAATTGAGTGTGTC 59.579 38.462 19.83 0.00 41.85 3.67
6646 7913 7.526359 GCCCTTTGTATTTCTCCCATTTACAAA 60.526 37.037 0.00 0.00 39.27 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.