Multiple sequence alignment - TraesCS5A01G521500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G521500 chr5A 100.000 4852 0 0 1 4852 682708986 682713837 0.000000e+00 8961.0
1 TraesCS5A01G521500 chr5A 88.679 106 6 4 167 272 682709029 682709128 1.830000e-24 124.0
2 TraesCS5A01G521500 chr5A 88.679 106 6 4 44 143 682709152 682709257 1.830000e-24 124.0
3 TraesCS5A01G521500 chr4D 90.300 3804 221 68 167 3903 501459386 501455664 0.000000e+00 4844.0
4 TraesCS5A01G521500 chr4D 94.815 135 4 3 19 150 501459411 501459277 1.770000e-49 207.0
5 TraesCS5A01G521500 chr4D 100.000 38 0 0 235 272 501459386 501459349 2.420000e-08 71.3
6 TraesCS5A01G521500 chr4B 91.443 2571 159 31 2290 4822 645429886 645427339 0.000000e+00 3472.0
7 TraesCS5A01G521500 chr4B 86.477 1368 90 44 941 2243 645431442 645430105 0.000000e+00 1413.0
8 TraesCS5A01G521500 chr4B 88.409 509 35 12 277 771 645432049 645431551 4.180000e-165 592.0
9 TraesCS5A01G521500 chr4B 82.203 118 10 8 798 912 645431551 645431442 1.860000e-14 91.6
10 TraesCS5A01G521500 chr7A 81.013 79 13 2 4511 4588 135631846 135631769 1.460000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G521500 chr5A 682708986 682713837 4851 False 8961.000000 8961 100.000000 1 4852 1 chr5A.!!$F1 4851
1 TraesCS5A01G521500 chr4D 501455664 501459411 3747 True 1707.433333 4844 95.038333 19 3903 3 chr4D.!!$R1 3884
2 TraesCS5A01G521500 chr4B 645427339 645432049 4710 True 1392.150000 3472 87.133000 277 4822 4 chr4B.!!$R1 4545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
842 862 0.116541 TCGTTCTCTTCCCTTCCCCT 59.883 55.0 0.0 0.0 0.00 4.79 F
1221 1264 0.039798 CGTCCGTGTTCCTTCTTCGA 60.040 55.0 0.0 0.0 0.00 3.71 F
2247 2390 0.254178 ATGTAGGGCAGGCAGAACAG 59.746 55.0 0.0 0.0 0.00 3.16 F
2784 3100 0.245539 ACCCGTTCCATGAGTACGTG 59.754 55.0 0.0 0.0 33.68 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 2136 0.523072 AACACATCTCATGCCGCAAC 59.477 50.0 0.00 0.0 0.00 4.17 R
2653 2969 0.592637 TGCACCGCTGATTGAAACTG 59.407 50.0 0.00 0.0 0.00 3.16 R
3496 3816 0.593128 GTACAAGTGCTGCAAGTGGG 59.407 55.0 2.77 0.0 35.30 4.61 R
4675 5021 0.179121 TCACGTTGAAGCACGACTGT 60.179 50.0 0.90 0.0 43.15 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.201548 GCTCGTACTCCGGTTTTCATTAAAATA 60.202 37.037 0.00 0.00 34.60 1.40
59 60 7.962917 TCGTACTCCGGTTTTCATTAAAATAC 58.037 34.615 0.00 0.00 34.60 1.89
60 61 7.818930 TCGTACTCCGGTTTTCATTAAAATACT 59.181 33.333 0.00 0.00 34.60 2.12
61 62 7.901377 CGTACTCCGGTTTTCATTAAAATACTG 59.099 37.037 0.00 0.00 36.96 2.74
62 63 6.617879 ACTCCGGTTTTCATTAAAATACTGC 58.382 36.000 0.00 0.00 36.96 4.40
63 64 5.956642 TCCGGTTTTCATTAAAATACTGCC 58.043 37.500 0.00 0.00 36.96 4.85
64 65 5.712917 TCCGGTTTTCATTAAAATACTGCCT 59.287 36.000 0.00 0.00 36.96 4.75
65 66 5.804979 CCGGTTTTCATTAAAATACTGCCTG 59.195 40.000 0.00 0.00 36.96 4.85
66 67 5.288472 CGGTTTTCATTAAAATACTGCCTGC 59.712 40.000 0.00 0.00 36.96 4.85
67 68 6.398095 GGTTTTCATTAAAATACTGCCTGCT 58.602 36.000 0.00 0.00 36.96 4.24
68 69 6.873605 GGTTTTCATTAAAATACTGCCTGCTT 59.126 34.615 0.00 0.00 36.96 3.91
69 70 7.387673 GGTTTTCATTAAAATACTGCCTGCTTT 59.612 33.333 0.00 0.00 36.96 3.51
70 71 8.435430 GTTTTCATTAAAATACTGCCTGCTTTC 58.565 33.333 0.00 0.00 36.96 2.62
71 72 5.879237 TCATTAAAATACTGCCTGCTTTCG 58.121 37.500 0.00 0.00 0.00 3.46
72 73 5.414454 TCATTAAAATACTGCCTGCTTTCGT 59.586 36.000 0.00 0.00 0.00 3.85
73 74 3.831715 AAAATACTGCCTGCTTTCGTC 57.168 42.857 0.00 0.00 0.00 4.20
74 75 2.770164 AATACTGCCTGCTTTCGTCT 57.230 45.000 0.00 0.00 0.00 4.18
75 76 3.887621 AATACTGCCTGCTTTCGTCTA 57.112 42.857 0.00 0.00 0.00 2.59
76 77 3.887621 ATACTGCCTGCTTTCGTCTAA 57.112 42.857 0.00 0.00 0.00 2.10
77 78 2.543777 ACTGCCTGCTTTCGTCTAAA 57.456 45.000 0.00 0.00 0.00 1.85
78 79 2.846193 ACTGCCTGCTTTCGTCTAAAA 58.154 42.857 0.00 0.00 0.00 1.52
79 80 3.211045 ACTGCCTGCTTTCGTCTAAAAA 58.789 40.909 0.00 0.00 0.00 1.94
105 106 9.643693 AAAACAAGAAGTATAAAATGGCTCATG 57.356 29.630 0.00 0.00 0.00 3.07
106 107 7.338800 ACAAGAAGTATAAAATGGCTCATGG 57.661 36.000 0.00 0.00 0.00 3.66
107 108 6.891908 ACAAGAAGTATAAAATGGCTCATGGT 59.108 34.615 0.00 0.00 0.00 3.55
108 109 7.397192 ACAAGAAGTATAAAATGGCTCATGGTT 59.603 33.333 0.00 0.00 0.00 3.67
109 110 7.961326 AGAAGTATAAAATGGCTCATGGTTT 57.039 32.000 0.00 0.00 0.00 3.27
110 111 8.366359 AGAAGTATAAAATGGCTCATGGTTTT 57.634 30.769 0.00 0.00 0.00 2.43
111 112 8.470002 AGAAGTATAAAATGGCTCATGGTTTTC 58.530 33.333 0.00 0.00 0.00 2.29
112 113 7.716799 AGTATAAAATGGCTCATGGTTTTCA 57.283 32.000 0.00 0.00 0.00 2.69
113 114 8.310122 AGTATAAAATGGCTCATGGTTTTCAT 57.690 30.769 0.00 0.00 36.31 2.57
114 115 8.761689 AGTATAAAATGGCTCATGGTTTTCATT 58.238 29.630 0.00 0.00 32.92 2.57
117 118 9.956640 ATAAAATGGCTCATGGTTTTCATTAAA 57.043 25.926 0.00 0.00 32.92 1.52
118 119 8.688747 AAAATGGCTCATGGTTTTCATTAAAA 57.311 26.923 0.00 0.00 32.92 1.52
119 120 8.866970 AAATGGCTCATGGTTTTCATTAAAAT 57.133 26.923 0.00 0.00 36.96 1.82
127 128 8.250332 TCATGGTTTTCATTAAAATACTGCCTC 58.750 33.333 0.00 0.00 36.96 4.70
167 168 9.574516 AAATAAGTACTATAAAATGGCTCAGGG 57.425 33.333 0.00 0.00 0.00 4.45
168 169 6.576778 AAGTACTATAAAATGGCTCAGGGT 57.423 37.500 0.00 0.00 0.00 4.34
169 170 6.576778 AGTACTATAAAATGGCTCAGGGTT 57.423 37.500 0.00 0.00 0.00 4.11
170 171 6.970191 AGTACTATAAAATGGCTCAGGGTTT 58.030 36.000 0.00 0.00 0.00 3.27
171 172 7.054751 AGTACTATAAAATGGCTCAGGGTTTC 58.945 38.462 0.00 0.00 0.00 2.78
172 173 5.201243 ACTATAAAATGGCTCAGGGTTTCC 58.799 41.667 0.00 0.00 0.00 3.13
173 174 2.397044 AAAATGGCTCAGGGTTTCCA 57.603 45.000 0.00 0.00 34.83 3.53
174 175 2.629017 AAATGGCTCAGGGTTTCCAT 57.371 45.000 0.00 0.00 40.77 3.41
175 176 2.629017 AATGGCTCAGGGTTTCCATT 57.371 45.000 0.00 0.00 42.61 3.16
176 177 3.756082 AATGGCTCAGGGTTTCCATTA 57.244 42.857 3.75 0.00 44.76 1.90
177 178 3.756082 ATGGCTCAGGGTTTCCATTAA 57.244 42.857 0.00 0.00 35.95 1.40
178 179 3.534357 TGGCTCAGGGTTTCCATTAAA 57.466 42.857 0.00 0.00 34.83 1.52
179 180 3.850752 TGGCTCAGGGTTTCCATTAAAA 58.149 40.909 0.00 0.00 34.83 1.52
180 181 4.424842 TGGCTCAGGGTTTCCATTAAAAT 58.575 39.130 0.00 0.00 34.83 1.82
181 182 5.584913 TGGCTCAGGGTTTCCATTAAAATA 58.415 37.500 0.00 0.00 34.83 1.40
182 183 5.420739 TGGCTCAGGGTTTCCATTAAAATAC 59.579 40.000 0.00 0.00 34.83 1.89
183 184 5.656859 GGCTCAGGGTTTCCATTAAAATACT 59.343 40.000 0.00 0.00 34.83 2.12
184 185 6.405842 GGCTCAGGGTTTCCATTAAAATACTG 60.406 42.308 0.00 0.00 34.83 2.74
185 186 6.524101 TCAGGGTTTCCATTAAAATACTGC 57.476 37.500 0.00 0.00 34.83 4.40
186 187 5.420739 TCAGGGTTTCCATTAAAATACTGCC 59.579 40.000 0.00 0.00 34.83 4.85
187 188 5.422012 CAGGGTTTCCATTAAAATACTGCCT 59.578 40.000 0.00 0.00 34.83 4.75
188 189 5.422012 AGGGTTTCCATTAAAATACTGCCTG 59.578 40.000 0.00 0.00 34.83 4.85
189 190 5.420739 GGGTTTCCATTAAAATACTGCCTGA 59.579 40.000 0.00 0.00 0.00 3.86
190 191 6.098266 GGGTTTCCATTAAAATACTGCCTGAT 59.902 38.462 0.00 0.00 0.00 2.90
191 192 7.364673 GGGTTTCCATTAAAATACTGCCTGATT 60.365 37.037 0.00 0.00 0.00 2.57
192 193 8.040727 GGTTTCCATTAAAATACTGCCTGATTT 58.959 33.333 0.00 0.00 0.00 2.17
193 194 9.087424 GTTTCCATTAAAATACTGCCTGATTTC 57.913 33.333 0.00 0.00 0.00 2.17
194 195 7.026631 TCCATTAAAATACTGCCTGATTTCG 57.973 36.000 0.00 0.00 0.00 3.46
195 196 6.601613 TCCATTAAAATACTGCCTGATTTCGT 59.398 34.615 0.00 0.00 0.00 3.85
196 197 6.912591 CCATTAAAATACTGCCTGATTTCGTC 59.087 38.462 0.00 0.00 0.00 4.20
197 198 4.965119 AAAATACTGCCTGATTTCGTCC 57.035 40.909 0.00 0.00 0.00 4.79
198 199 3.627395 AATACTGCCTGATTTCGTCCA 57.373 42.857 0.00 0.00 0.00 4.02
199 200 3.627395 ATACTGCCTGATTTCGTCCAA 57.373 42.857 0.00 0.00 0.00 3.53
200 201 2.270352 ACTGCCTGATTTCGTCCAAA 57.730 45.000 0.00 0.00 0.00 3.28
201 202 2.582052 ACTGCCTGATTTCGTCCAAAA 58.418 42.857 0.00 0.00 0.00 2.44
202 203 2.955660 ACTGCCTGATTTCGTCCAAAAA 59.044 40.909 0.00 0.00 0.00 1.94
314 317 0.940126 ATTCGTTCTCGATGCATGCC 59.060 50.000 16.68 0.00 45.65 4.40
347 350 3.771491 CCGTCGTCGTCGTCGTCT 61.771 66.667 17.80 0.00 44.09 4.18
363 366 1.158466 TCTCCTCCTCCTGCACCAA 59.842 57.895 0.00 0.00 0.00 3.67
501 505 3.307906 AACCCGAGGCACGCACTA 61.308 61.111 0.00 0.00 41.07 2.74
503 507 3.449227 CCCGAGGCACGCACTAGA 61.449 66.667 0.00 0.00 41.07 2.43
527 543 1.681486 TAGATTCGTGCCGCCATCCA 61.681 55.000 0.00 0.00 0.00 3.41
565 581 4.621991 TCGATCGATTGATTTCTTCTCCC 58.378 43.478 15.15 0.00 34.09 4.30
567 583 3.179443 TCGATTGATTTCTTCTCCCCG 57.821 47.619 0.00 0.00 0.00 5.73
689 709 4.736896 GACGGTGGCGGGAGTGAC 62.737 72.222 0.00 0.00 0.00 3.67
692 712 2.358737 GGTGGCGGGAGTGACAAG 60.359 66.667 0.00 0.00 0.00 3.16
693 713 2.426023 GTGGCGGGAGTGACAAGT 59.574 61.111 0.00 0.00 0.00 3.16
805 825 3.119029 ACGACCCGTAGCTAGCAATTAAA 60.119 43.478 18.83 0.00 38.73 1.52
810 830 3.002348 CCGTAGCTAGCAATTAAACCAGC 59.998 47.826 18.83 0.00 0.00 4.85
811 831 3.621268 CGTAGCTAGCAATTAAACCAGCA 59.379 43.478 18.83 0.00 0.00 4.41
842 862 0.116541 TCGTTCTCTTCCCTTCCCCT 59.883 55.000 0.00 0.00 0.00 4.79
850 870 1.996291 CTTCCCTTCCCCTCTTTCCTT 59.004 52.381 0.00 0.00 0.00 3.36
870 890 0.952280 TGGCCGTCGATACATCTCTC 59.048 55.000 0.00 0.00 0.00 3.20
871 891 1.240256 GGCCGTCGATACATCTCTCT 58.760 55.000 0.00 0.00 0.00 3.10
872 892 1.198178 GGCCGTCGATACATCTCTCTC 59.802 57.143 0.00 0.00 0.00 3.20
873 893 1.198178 GCCGTCGATACATCTCTCTCC 59.802 57.143 0.00 0.00 0.00 3.71
874 894 1.807742 CCGTCGATACATCTCTCTCCC 59.192 57.143 0.00 0.00 0.00 4.30
913 933 7.377766 CATTAATTGGACGGGATATCGATTT 57.622 36.000 1.71 0.00 0.00 2.17
969 989 3.005897 AGAGATAAGTGTTGTGTCTGCGT 59.994 43.478 0.00 0.00 0.00 5.24
992 1020 0.618968 GAGGGAGAGGCAGGGAGAAA 60.619 60.000 0.00 0.00 0.00 2.52
1149 1192 1.033574 GCATCTGCGAGGTACCTACT 58.966 55.000 16.29 0.00 0.00 2.57
1154 1197 2.239150 TCTGCGAGGTACCTACTTCTCT 59.761 50.000 16.29 0.00 30.94 3.10
1157 1200 2.358582 GCGAGGTACCTACTTCTCTTCC 59.641 54.545 16.29 0.00 30.94 3.46
1159 1202 4.208746 CGAGGTACCTACTTCTCTTCCAT 58.791 47.826 16.29 0.00 30.94 3.41
1191 1234 3.661161 TCCTCCTCCTCCTTCCGATTATA 59.339 47.826 0.00 0.00 0.00 0.98
1200 1243 5.183522 CCTCCTTCCGATTATACACTCTACC 59.816 48.000 0.00 0.00 0.00 3.18
1201 1244 5.075493 TCCTTCCGATTATACACTCTACCC 58.925 45.833 0.00 0.00 0.00 3.69
1213 1256 1.941999 CTCTACCCCGTCCGTGTTCC 61.942 65.000 0.00 0.00 0.00 3.62
1215 1258 1.533753 TACCCCGTCCGTGTTCCTT 60.534 57.895 0.00 0.00 0.00 3.36
1216 1259 1.535204 TACCCCGTCCGTGTTCCTTC 61.535 60.000 0.00 0.00 0.00 3.46
1217 1260 2.580601 CCCCGTCCGTGTTCCTTCT 61.581 63.158 0.00 0.00 0.00 2.85
1218 1261 1.370064 CCCGTCCGTGTTCCTTCTT 59.630 57.895 0.00 0.00 0.00 2.52
1219 1262 0.669625 CCCGTCCGTGTTCCTTCTTC 60.670 60.000 0.00 0.00 0.00 2.87
1220 1263 1.007336 CCGTCCGTGTTCCTTCTTCG 61.007 60.000 0.00 0.00 0.00 3.79
1221 1264 0.039798 CGTCCGTGTTCCTTCTTCGA 60.040 55.000 0.00 0.00 0.00 3.71
1259 1331 4.569761 TGTAGTATGGAGATCTCGCAAC 57.430 45.455 16.46 12.99 0.00 4.17
1264 1336 5.053145 AGTATGGAGATCTCGCAACATTTC 58.947 41.667 16.46 10.18 0.00 2.17
1269 1341 4.187694 GAGATCTCGCAACATTTCCTTCT 58.812 43.478 7.04 0.00 0.00 2.85
1271 1343 5.734720 AGATCTCGCAACATTTCCTTCTTA 58.265 37.500 0.00 0.00 0.00 2.10
1272 1344 6.352516 AGATCTCGCAACATTTCCTTCTTAT 58.647 36.000 0.00 0.00 0.00 1.73
1273 1345 6.481644 AGATCTCGCAACATTTCCTTCTTATC 59.518 38.462 0.00 0.00 0.00 1.75
1274 1346 4.566759 TCTCGCAACATTTCCTTCTTATCG 59.433 41.667 0.00 0.00 0.00 2.92
1275 1347 4.500127 TCGCAACATTTCCTTCTTATCGA 58.500 39.130 0.00 0.00 0.00 3.59
1319 1398 3.826157 TCGGAGTGCATTGATTTTTCCTT 59.174 39.130 0.00 0.00 0.00 3.36
1340 1420 6.816140 TCCTTTTGAAATCCGGAATTAATTGC 59.184 34.615 9.01 7.59 0.00 3.56
1341 1421 6.593382 CCTTTTGAAATCCGGAATTAATTGCA 59.407 34.615 18.33 0.00 0.00 4.08
1353 1433 6.183360 CGGAATTAATTGCACTAGGATCGATC 60.183 42.308 17.36 17.36 0.00 3.69
1354 1434 6.183360 GGAATTAATTGCACTAGGATCGATCG 60.183 42.308 18.81 9.36 0.00 3.69
1355 1435 5.447624 TTAATTGCACTAGGATCGATCGA 57.552 39.130 21.86 21.86 0.00 3.59
1356 1436 4.527509 AATTGCACTAGGATCGATCGAT 57.472 40.909 29.76 29.76 37.59 3.59
1384 1468 6.187727 AGATACTGTTTCTTTTCCACTCCA 57.812 37.500 0.00 0.00 0.00 3.86
1386 1470 3.963129 ACTGTTTCTTTTCCACTCCACA 58.037 40.909 0.00 0.00 0.00 4.17
1390 1474 6.777580 ACTGTTTCTTTTCCACTCCACATATT 59.222 34.615 0.00 0.00 0.00 1.28
1391 1475 7.942341 ACTGTTTCTTTTCCACTCCACATATTA 59.058 33.333 0.00 0.00 0.00 0.98
1408 1494 8.774586 CCACATATTATTTTTCTTCGTCCTAGG 58.225 37.037 0.82 0.82 0.00 3.02
1461 1547 1.057471 TCAACATGGTACCCCGAACA 58.943 50.000 10.07 0.00 0.00 3.18
1533 1628 3.244976 CAATTCCTGCACAAAATCGACC 58.755 45.455 0.00 0.00 0.00 4.79
1569 1664 3.750512 GTTTTCGAAACTTTGTCGTGGT 58.249 40.909 10.79 0.00 39.52 4.16
1570 1665 4.896080 GTTTTCGAAACTTTGTCGTGGTA 58.104 39.130 10.79 0.00 39.52 3.25
1583 1680 7.660208 ACTTTGTCGTGGTAAACTGAATTCTAT 59.340 33.333 7.05 0.00 0.00 1.98
1586 1683 6.588756 TGTCGTGGTAAACTGAATTCTATGTC 59.411 38.462 7.05 0.00 0.00 3.06
1588 1685 5.005394 CGTGGTAAACTGAATTCTATGTCCG 59.995 44.000 7.05 0.00 0.00 4.79
1589 1686 5.873164 GTGGTAAACTGAATTCTATGTCCGT 59.127 40.000 7.05 0.00 0.00 4.69
1590 1687 6.035758 GTGGTAAACTGAATTCTATGTCCGTC 59.964 42.308 7.05 0.00 0.00 4.79
1591 1688 5.522824 GGTAAACTGAATTCTATGTCCGTCC 59.477 44.000 7.05 2.29 0.00 4.79
1663 1777 4.119862 ACCTAACGATTGGTGATTGATCG 58.880 43.478 0.00 3.70 45.87 3.69
1666 1780 2.205074 ACGATTGGTGATTGATCGCTC 58.795 47.619 5.03 0.00 44.69 5.03
1709 1831 4.819630 AGTGTACTAATGGTGTTTGTGGTG 59.180 41.667 0.00 0.00 0.00 4.17
1710 1832 4.023536 GTGTACTAATGGTGTTTGTGGTGG 60.024 45.833 0.00 0.00 0.00 4.61
1711 1833 3.306472 ACTAATGGTGTTTGTGGTGGT 57.694 42.857 0.00 0.00 0.00 4.16
1752 1874 2.954753 CTTCACGTTCGTGCAGGGC 61.955 63.158 18.63 0.00 36.20 5.19
1774 1896 1.527370 GTGTACCTGGGGCTGATCC 59.473 63.158 0.00 0.00 0.00 3.36
1899 2021 1.221021 CTTCCTCAACTACCCCGCC 59.779 63.158 0.00 0.00 0.00 6.13
1951 2073 4.546570 GTTCGCCAAAGTTATTTCTGCTT 58.453 39.130 0.00 0.00 0.00 3.91
1990 2112 9.502091 TCAGACAGTGCAGTAACTTAATTTATT 57.498 29.630 0.00 0.00 0.00 1.40
2025 2147 7.038048 TCATTTTATTTATTGTTGCGGCATGA 58.962 30.769 2.28 0.00 0.00 3.07
2031 2153 0.522626 TTGTTGCGGCATGAGATGTG 59.477 50.000 2.28 0.00 0.00 3.21
2032 2154 0.606130 TGTTGCGGCATGAGATGTGT 60.606 50.000 2.28 0.00 0.00 3.72
2033 2155 0.523072 GTTGCGGCATGAGATGTGTT 59.477 50.000 2.28 0.00 0.00 3.32
2040 2162 2.322161 GCATGAGATGTGTTGTTGTGC 58.678 47.619 0.00 0.00 0.00 4.57
2056 2178 2.288666 TGTGCTCTTGTGTGAGGAAAC 58.711 47.619 0.00 0.00 36.22 2.78
2058 2180 2.945668 GTGCTCTTGTGTGAGGAAACTT 59.054 45.455 0.00 0.00 44.43 2.66
2069 2191 4.881850 TGTGAGGAAACTTGAACCTTTCTC 59.118 41.667 0.00 0.00 44.43 2.87
2108 2230 5.355071 CCAATTTGAGAATCCGACATCAGAA 59.645 40.000 0.00 0.00 0.00 3.02
2150 2272 5.735354 GCCAAGCTATTCCTGTTCAATGATG 60.735 44.000 0.00 0.00 0.00 3.07
2151 2273 5.359009 CCAAGCTATTCCTGTTCAATGATGT 59.641 40.000 0.00 0.00 0.00 3.06
2152 2274 6.263344 CAAGCTATTCCTGTTCAATGATGTG 58.737 40.000 0.00 0.00 0.00 3.21
2153 2275 4.337555 AGCTATTCCTGTTCAATGATGTGC 59.662 41.667 0.00 0.00 0.00 4.57
2154 2276 4.096833 GCTATTCCTGTTCAATGATGTGCA 59.903 41.667 0.00 0.00 0.00 4.57
2188 2310 3.489785 CGAGCGTGTTTCTACTTTTGAGT 59.510 43.478 0.00 0.00 0.00 3.41
2190 2316 3.808174 AGCGTGTTTCTACTTTTGAGTCC 59.192 43.478 0.00 0.00 0.00 3.85
2209 2335 4.104420 AGTCCGGGATAGTACACATACTCT 59.896 45.833 0.00 0.00 40.98 3.24
2211 2337 4.825634 TCCGGGATAGTACACATACTCTTG 59.174 45.833 0.00 0.00 40.98 3.02
2213 2339 5.068723 CCGGGATAGTACACATACTCTTGTT 59.931 44.000 0.00 0.00 40.98 2.83
2222 2348 8.936864 AGTACACATACTCTTGTTGCTAAAATC 58.063 33.333 0.00 0.00 36.97 2.17
2247 2390 0.254178 ATGTAGGGCAGGCAGAACAG 59.746 55.000 0.00 0.00 0.00 3.16
2278 2421 3.637998 ATGCGCATTCTGAATGATTCC 57.362 42.857 29.34 13.41 41.46 3.01
2288 2431 8.419442 GCATTCTGAATGATTCCCTCTTAATTT 58.581 33.333 29.34 0.00 41.46 1.82
2302 2600 5.123186 CCTCTTAATTTGGTATGCACGACAA 59.877 40.000 0.00 0.00 0.00 3.18
2304 2602 3.848272 AATTTGGTATGCACGACAAGG 57.152 42.857 0.00 0.00 0.00 3.61
2305 2603 0.878416 TTTGGTATGCACGACAAGGC 59.122 50.000 0.00 0.00 0.00 4.35
2308 2606 1.425428 GTATGCACGACAAGGCTGC 59.575 57.895 0.00 0.00 0.00 5.25
2359 2661 4.882671 AATGTCTAGTATTTTGCCAGCG 57.117 40.909 0.00 0.00 0.00 5.18
2368 2670 1.782044 TTTTGCCAGCGAGAAATTGC 58.218 45.000 0.00 0.00 0.00 3.56
2381 2683 6.309737 AGCGAGAAATTGCTTTTCAAATGATC 59.690 34.615 12.99 0.00 45.19 2.92
2504 2813 1.118838 CTGTCCCTAGGAAGCAGAGG 58.881 60.000 11.48 0.00 30.34 3.69
2560 2869 6.578023 TGTTTTGAAACTTCCAATTGGTAGG 58.422 36.000 28.50 19.32 39.59 3.18
2576 2892 5.001833 TGGTAGGAAGTTGACTACTGGTA 57.998 43.478 11.87 0.00 39.53 3.25
2586 2902 8.608844 AAGTTGACTACTGGTAATTTTCTGAG 57.391 34.615 0.00 0.00 37.12 3.35
2617 2933 5.107298 CGAAATGAAGTTGAGACCAGAGAAC 60.107 44.000 0.00 0.00 0.00 3.01
2623 2939 3.964031 AGTTGAGACCAGAGAACTTCAGT 59.036 43.478 0.00 0.00 0.00 3.41
2632 2948 7.943447 AGACCAGAGAACTTCAGTTAGTACTTA 59.057 37.037 0.00 0.00 38.56 2.24
2687 3003 3.375299 GCGGTGCAGATCTTATTTCTGTT 59.625 43.478 0.00 0.00 42.12 3.16
2699 3015 9.118236 GATCTTATTTCTGTTTTTGACCTTTCG 57.882 33.333 0.00 0.00 0.00 3.46
2784 3100 0.245539 ACCCGTTCCATGAGTACGTG 59.754 55.000 0.00 0.00 33.68 4.49
2787 3103 1.068125 CCGTTCCATGAGTACGTGTCA 60.068 52.381 0.00 0.82 33.68 3.58
3002 3319 8.367911 TGTCTTCTACATGTTTCTGTCAGTTAT 58.632 33.333 2.30 0.00 31.43 1.89
3014 3331 6.373005 TCTGTCAGTTATTGAATTGGGAGA 57.627 37.500 0.00 0.00 37.61 3.71
3153 3472 2.426024 GGAGTGCGTGTTCTCAGGTATA 59.574 50.000 0.00 0.00 32.93 1.47
3154 3473 3.068307 GGAGTGCGTGTTCTCAGGTATAT 59.932 47.826 0.00 0.00 32.93 0.86
3160 3479 5.163457 TGCGTGTTCTCAGGTATATGATCAA 60.163 40.000 0.00 0.00 32.77 2.57
3169 3488 8.811017 TCTCAGGTATATGATCAAAATCTCTCC 58.189 37.037 0.00 0.00 32.75 3.71
3183 3502 5.972107 AATCTCTCCTCCATGTTGTTTTG 57.028 39.130 0.00 0.00 0.00 2.44
3189 3508 2.958355 CCTCCATGTTGTTTTGTCAGGT 59.042 45.455 0.00 0.00 0.00 4.00
3194 3513 7.118496 TCCATGTTGTTTTGTCAGGTATTTT 57.882 32.000 0.00 0.00 0.00 1.82
3304 3623 3.956848 AGCCTTAAGGAATCCATCTTTGC 59.043 43.478 26.21 4.60 37.39 3.68
3305 3624 3.701040 GCCTTAAGGAATCCATCTTTGCA 59.299 43.478 26.21 0.00 37.39 4.08
3365 3685 7.280428 CAGCACTACATTCTTCATTCTTCTGAT 59.720 37.037 0.00 0.00 0.00 2.90
3409 3729 4.572389 CGGAAAAGTATCTGATCCACTTGG 59.428 45.833 6.58 0.00 32.96 3.61
3459 3779 4.454847 GCTGTTAGTACTTCTCCCCAAAAC 59.545 45.833 0.00 0.00 0.00 2.43
3496 3816 7.470289 AGATTAATCTGACAGACGTTTATGC 57.530 36.000 17.26 0.00 35.42 3.14
3521 3841 1.493772 TGCAGCACTTGTACGTGTAC 58.506 50.000 0.00 3.21 37.24 2.90
3569 3889 2.915659 TTCGTCGGGCAGGTGTCT 60.916 61.111 0.00 0.00 0.00 3.41
3617 3937 4.501714 GCGACGACGGCCATGGTA 62.502 66.667 14.67 0.00 40.15 3.25
3668 3988 4.274978 TCCTGTCGTACCTGATATTCACA 58.725 43.478 0.00 0.00 0.00 3.58
3842 4162 0.178987 TAGAGGAGGAGACATCGCCC 60.179 60.000 0.00 0.00 36.39 6.13
3907 4227 0.244721 GAGTGCAGGATTTGGCCAAC 59.755 55.000 20.35 7.74 0.00 3.77
4001 4321 7.739498 TGTAAGTTAAAGGGACAAATCAGAC 57.261 36.000 0.00 0.00 0.00 3.51
4012 4332 2.306805 ACAAATCAGACTGCAGGATGGA 59.693 45.455 19.93 10.22 35.86 3.41
4021 4341 2.924757 TGCAGGATGGAGATGATCAC 57.075 50.000 0.00 0.00 35.86 3.06
4055 4375 7.775053 AGATGTTGTTAATCCTTTTGCCTTA 57.225 32.000 0.00 0.00 0.00 2.69
4062 4382 3.653835 ATCCTTTTGCCTTAGGTCTCC 57.346 47.619 0.00 0.00 33.15 3.71
4154 4479 4.020543 TCTTCTCCAGACTAAGCTTCTCC 58.979 47.826 0.00 0.00 0.00 3.71
4182 4507 2.367241 TCTTTGATGTTCCTCCGTGTCA 59.633 45.455 0.00 0.00 0.00 3.58
4184 4509 3.417069 TTGATGTTCCTCCGTGTCATT 57.583 42.857 0.00 0.00 0.00 2.57
4217 4542 1.337071 GAGAACACCTCACTCGTGACA 59.663 52.381 0.00 0.00 41.58 3.58
4250 4577 5.798125 ATATTGATGACACCTCACTCGAT 57.202 39.130 0.00 0.00 0.00 3.59
4255 4582 4.705023 TGATGACACCTCACTCGATCTTAA 59.295 41.667 0.00 0.00 0.00 1.85
4262 4589 7.203910 ACACCTCACTCGATCTTAATATTGAC 58.796 38.462 0.00 0.00 0.00 3.18
4276 4603 8.577296 TCTTAATATTGACCATACTTCTCTCCG 58.423 37.037 0.00 0.00 0.00 4.63
4278 4605 4.657436 ATTGACCATACTTCTCTCCGTC 57.343 45.455 0.00 0.00 0.00 4.79
4310 4637 1.683917 GTGATATGTCCAGCCGTCTCT 59.316 52.381 0.00 0.00 0.00 3.10
4343 4670 1.079405 CTCCCGAGTAAAAGGCGCA 60.079 57.895 10.83 0.00 0.00 6.09
4350 4677 2.222819 CGAGTAAAAGGCGCATGTTCTC 60.223 50.000 10.83 11.49 0.00 2.87
4372 4699 1.228894 TGCTCCGTTCCTCTGGTCT 60.229 57.895 0.00 0.00 0.00 3.85
4398 4725 1.746787 ACAGTTTGAAACGGTGAACCC 59.253 47.619 12.82 0.00 38.38 4.11
4405 4732 1.003233 GAAACGGTGAACCCCATCTCT 59.997 52.381 0.00 0.00 0.00 3.10
4406 4733 1.064825 AACGGTGAACCCCATCTCTT 58.935 50.000 0.00 0.00 0.00 2.85
4411 4738 2.040412 GGTGAACCCCATCTCTTGAAGT 59.960 50.000 0.00 0.00 0.00 3.01
4419 4746 3.560882 CCCATCTCTTGAAGTTCTTGCCT 60.561 47.826 4.17 0.00 0.00 4.75
4423 4750 6.128063 CCATCTCTTGAAGTTCTTGCCTAAAG 60.128 42.308 4.17 0.00 37.22 1.85
4425 4752 4.718961 TCTTGAAGTTCTTGCCTAAAGCT 58.281 39.130 4.17 0.00 44.23 3.74
4435 4768 5.503927 TCTTGCCTAAAGCTCTGAAATCAT 58.496 37.500 0.00 0.00 44.23 2.45
4438 4771 7.611467 TCTTGCCTAAAGCTCTGAAATCATTAA 59.389 33.333 0.00 0.00 44.23 1.40
4463 4796 5.420725 AAGATGTACCTCTTGCACATGTA 57.579 39.130 12.03 0.00 34.22 2.29
4480 4813 4.256920 CATGTAACTCTCACTCCCTTTGG 58.743 47.826 0.00 0.00 0.00 3.28
4502 4835 8.421249 TTGGTGGTGAAGATTTTATCTCAATT 57.579 30.769 0.00 0.00 39.08 2.32
4508 4841 8.345565 GGTGAAGATTTTATCTCAATTATGCGT 58.654 33.333 0.00 0.00 39.08 5.24
4517 4850 5.484173 TCTCAATTATGCGTCCAAATCAC 57.516 39.130 0.00 0.00 0.00 3.06
4522 4855 1.518325 ATGCGTCCAAATCACGAACA 58.482 45.000 0.00 0.00 39.75 3.18
4532 4865 5.697178 TCCAAATCACGAACAGTTTTCGATA 59.303 36.000 17.76 5.80 43.97 2.92
4536 4869 6.721571 ATCACGAACAGTTTTCGATATTGT 57.278 33.333 17.76 0.00 43.97 2.71
4538 4871 5.464057 TCACGAACAGTTTTCGATATTGTGT 59.536 36.000 17.76 0.00 43.97 3.72
4542 4875 6.302313 CGAACAGTTTTCGATATTGTGTTTCC 59.698 38.462 5.49 0.00 43.97 3.13
4548 4881 6.582677 TTTCGATATTGTGTTTCCCATGTT 57.417 33.333 0.00 0.00 0.00 2.71
4554 4887 7.226523 CGATATTGTGTTTCCCATGTTGAGATA 59.773 37.037 0.00 0.00 0.00 1.98
4557 4890 6.757897 TGTGTTTCCCATGTTGAGATATTC 57.242 37.500 0.00 0.00 0.00 1.75
4558 4891 5.353956 TGTGTTTCCCATGTTGAGATATTCG 59.646 40.000 0.00 0.00 0.00 3.34
4595 4928 7.838771 ATGTTAATAGGTTTGGACGAACTAC 57.161 36.000 0.00 0.00 0.00 2.73
4603 4936 4.521010 GTTTGGACGAACTACTTTTTCCG 58.479 43.478 0.00 0.00 0.00 4.30
4652 4985 6.371271 CAGGAAACAAAGAACAAAAACATGGT 59.629 34.615 0.00 0.00 0.00 3.55
4653 4986 6.371271 AGGAAACAAAGAACAAAAACATGGTG 59.629 34.615 0.00 0.00 0.00 4.17
4654 4987 5.544136 AACAAAGAACAAAAACATGGTGC 57.456 34.783 0.00 0.00 0.00 5.01
4655 4988 3.938334 ACAAAGAACAAAAACATGGTGCC 59.062 39.130 0.00 0.00 0.00 5.01
4656 4989 4.190772 CAAAGAACAAAAACATGGTGCCT 58.809 39.130 0.00 0.00 0.00 4.75
4657 4990 4.486125 AAGAACAAAAACATGGTGCCTT 57.514 36.364 0.00 0.00 0.00 4.35
4658 4991 4.486125 AGAACAAAAACATGGTGCCTTT 57.514 36.364 0.00 0.00 0.00 3.11
4659 4992 4.842574 AGAACAAAAACATGGTGCCTTTT 58.157 34.783 0.00 0.00 0.00 2.27
4668 5014 4.616953 ACATGGTGCCTTTTTACTTTTCG 58.383 39.130 0.00 0.00 0.00 3.46
4673 5019 4.441773 GGTGCCTTTTTACTTTTCGGGAAA 60.442 41.667 0.00 0.00 0.00 3.13
4675 5021 4.159879 TGCCTTTTTACTTTTCGGGAAACA 59.840 37.500 0.00 0.00 0.00 2.83
4679 5025 5.900865 TTTTACTTTTCGGGAAACACAGT 57.099 34.783 0.00 0.00 0.00 3.55
4680 5026 5.488645 TTTACTTTTCGGGAAACACAGTC 57.511 39.130 1.43 0.00 0.00 3.51
4707 5053 2.605818 TCAACGTGAAGTACAACTGTGC 59.394 45.455 0.00 0.00 0.00 4.57
4733 5079 4.985413 TGACTTTTCAGAAAGCACAACTG 58.015 39.130 0.00 0.00 44.92 3.16
4761 5107 7.835634 TTTTTACTTTTTCGGAAAGCATGTT 57.164 28.000 3.09 0.00 0.00 2.71
4784 5130 2.706555 GCTTTACTGGGAAGCACAAC 57.293 50.000 10.97 0.00 46.67 3.32
4806 5152 3.251729 CAGTGCTTTTCATACTGTGTGCT 59.748 43.478 0.00 0.00 37.59 4.40
4841 5187 7.660030 AAAAACAGATTTTCTTTCCCTCAGA 57.340 32.000 0.00 0.00 36.49 3.27
4842 5188 7.660030 AAAACAGATTTTCTTTCCCTCAGAA 57.340 32.000 0.00 0.00 32.29 3.02
4843 5189 6.641169 AACAGATTTTCTTTCCCTCAGAAC 57.359 37.500 0.00 0.00 32.95 3.01
4844 5190 5.694995 ACAGATTTTCTTTCCCTCAGAACA 58.305 37.500 0.00 0.00 32.95 3.18
4845 5191 5.532779 ACAGATTTTCTTTCCCTCAGAACAC 59.467 40.000 0.00 0.00 32.95 3.32
4846 5192 5.048434 CAGATTTTCTTTCCCTCAGAACACC 60.048 44.000 0.00 0.00 32.95 4.16
4847 5193 4.519906 TTTTCTTTCCCTCAGAACACCT 57.480 40.909 0.00 0.00 32.95 4.00
4848 5194 5.640158 TTTTCTTTCCCTCAGAACACCTA 57.360 39.130 0.00 0.00 32.95 3.08
4849 5195 4.891992 TTCTTTCCCTCAGAACACCTAG 57.108 45.455 0.00 0.00 32.95 3.02
4850 5196 3.173965 TCTTTCCCTCAGAACACCTAGG 58.826 50.000 7.41 7.41 32.95 3.02
4851 5197 3.173965 CTTTCCCTCAGAACACCTAGGA 58.826 50.000 17.98 0.00 32.95 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.033601 ACAGGTCGATGCTCTCTCCT 60.034 55.000 0.00 0.00 0.00 3.69
1 2 0.383949 GACAGGTCGATGCTCTCTCC 59.616 60.000 0.00 0.00 0.00 3.71
3 4 1.846007 AAGACAGGTCGATGCTCTCT 58.154 50.000 0.00 0.00 34.09 3.10
4 5 2.266554 CAAAGACAGGTCGATGCTCTC 58.733 52.381 0.00 0.00 34.09 3.20
6 7 0.723981 GCAAAGACAGGTCGATGCTC 59.276 55.000 18.71 0.01 40.43 4.26
7 8 0.035317 TGCAAAGACAGGTCGATGCT 59.965 50.000 23.18 0.00 42.45 3.79
8 9 0.166814 GTGCAAAGACAGGTCGATGC 59.833 55.000 18.99 18.99 42.37 3.91
9 10 1.511850 TGTGCAAAGACAGGTCGATG 58.488 50.000 0.00 0.00 34.09 3.84
10 11 1.873591 GTTGTGCAAAGACAGGTCGAT 59.126 47.619 0.00 0.00 34.09 3.59
11 12 1.295792 GTTGTGCAAAGACAGGTCGA 58.704 50.000 0.00 0.00 34.09 4.20
12 13 1.003545 CTGTTGTGCAAAGACAGGTCG 60.004 52.381 14.39 0.00 37.67 4.79
13 14 1.268743 GCTGTTGTGCAAAGACAGGTC 60.269 52.381 20.39 7.13 40.77 3.85
14 15 0.740737 GCTGTTGTGCAAAGACAGGT 59.259 50.000 20.39 0.00 40.77 4.00
15 16 1.002033 GAGCTGTTGTGCAAAGACAGG 60.002 52.381 20.39 8.16 40.77 4.00
16 17 1.333524 CGAGCTGTTGTGCAAAGACAG 60.334 52.381 16.74 16.74 42.75 3.51
17 18 0.657312 CGAGCTGTTGTGCAAAGACA 59.343 50.000 0.00 0.00 34.99 3.41
58 59 2.543777 TTTAGACGAAAGCAGGCAGT 57.456 45.000 0.00 0.00 0.00 4.40
59 60 3.896648 TTTTTAGACGAAAGCAGGCAG 57.103 42.857 0.00 0.00 0.00 4.85
79 80 9.643693 CATGAGCCATTTTATACTTCTTGTTTT 57.356 29.630 0.00 0.00 0.00 2.43
80 81 8.253113 CCATGAGCCATTTTATACTTCTTGTTT 58.747 33.333 0.00 0.00 0.00 2.83
81 82 7.397192 ACCATGAGCCATTTTATACTTCTTGTT 59.603 33.333 0.00 0.00 0.00 2.83
82 83 6.891908 ACCATGAGCCATTTTATACTTCTTGT 59.108 34.615 0.00 0.00 0.00 3.16
83 84 7.338800 ACCATGAGCCATTTTATACTTCTTG 57.661 36.000 0.00 0.00 0.00 3.02
84 85 7.961326 AACCATGAGCCATTTTATACTTCTT 57.039 32.000 0.00 0.00 0.00 2.52
85 86 7.961326 AAACCATGAGCCATTTTATACTTCT 57.039 32.000 0.00 0.00 0.00 2.85
86 87 8.250332 TGAAAACCATGAGCCATTTTATACTTC 58.750 33.333 0.00 0.00 0.00 3.01
87 88 8.133024 TGAAAACCATGAGCCATTTTATACTT 57.867 30.769 0.00 0.00 0.00 2.24
88 89 7.716799 TGAAAACCATGAGCCATTTTATACT 57.283 32.000 0.00 0.00 0.00 2.12
89 90 8.947055 AATGAAAACCATGAGCCATTTTATAC 57.053 30.769 0.00 0.00 35.24 1.47
91 92 9.956640 TTTAATGAAAACCATGAGCCATTTTAT 57.043 25.926 0.00 0.00 35.24 1.40
92 93 9.784531 TTTTAATGAAAACCATGAGCCATTTTA 57.215 25.926 0.00 0.00 35.24 1.52
93 94 8.688747 TTTTAATGAAAACCATGAGCCATTTT 57.311 26.923 0.00 0.00 35.24 1.82
94 95 8.866970 ATTTTAATGAAAACCATGAGCCATTT 57.133 26.923 0.00 0.00 37.37 2.32
95 96 9.382275 GTATTTTAATGAAAACCATGAGCCATT 57.618 29.630 0.00 0.00 37.37 3.16
96 97 8.761689 AGTATTTTAATGAAAACCATGAGCCAT 58.238 29.630 0.00 0.00 37.37 4.40
97 98 8.034215 CAGTATTTTAATGAAAACCATGAGCCA 58.966 33.333 0.00 0.00 37.37 4.75
98 99 7.010460 GCAGTATTTTAATGAAAACCATGAGCC 59.990 37.037 0.00 0.00 37.37 4.70
99 100 7.010460 GGCAGTATTTTAATGAAAACCATGAGC 59.990 37.037 0.00 0.00 37.37 4.26
100 101 8.253113 AGGCAGTATTTTAATGAAAACCATGAG 58.747 33.333 0.00 0.00 37.37 2.90
101 102 8.133024 AGGCAGTATTTTAATGAAAACCATGA 57.867 30.769 0.00 0.00 37.37 3.07
102 103 8.034215 TGAGGCAGTATTTTAATGAAAACCATG 58.966 33.333 0.00 0.00 37.37 3.66
103 104 8.133024 TGAGGCAGTATTTTAATGAAAACCAT 57.867 30.769 0.00 0.00 37.37 3.55
104 105 7.531857 TGAGGCAGTATTTTAATGAAAACCA 57.468 32.000 0.00 0.00 37.37 3.67
105 106 9.435688 AAATGAGGCAGTATTTTAATGAAAACC 57.564 29.630 0.00 0.00 37.37 3.27
107 108 9.352784 CGAAATGAGGCAGTATTTTAATGAAAA 57.647 29.630 0.00 0.00 38.87 2.29
108 109 8.519526 ACGAAATGAGGCAGTATTTTAATGAAA 58.480 29.630 0.00 0.00 0.00 2.69
109 110 8.050778 ACGAAATGAGGCAGTATTTTAATGAA 57.949 30.769 0.00 0.00 0.00 2.57
110 111 7.552687 AGACGAAATGAGGCAGTATTTTAATGA 59.447 33.333 0.00 0.00 0.00 2.57
111 112 7.697691 AGACGAAATGAGGCAGTATTTTAATG 58.302 34.615 0.00 0.00 0.00 1.90
112 113 7.865706 AGACGAAATGAGGCAGTATTTTAAT 57.134 32.000 0.00 0.00 0.00 1.40
113 114 8.780846 TTAGACGAAATGAGGCAGTATTTTAA 57.219 30.769 0.00 0.00 0.00 1.52
114 115 8.780846 TTTAGACGAAATGAGGCAGTATTTTA 57.219 30.769 0.00 0.00 0.00 1.52
115 116 7.681939 TTTAGACGAAATGAGGCAGTATTTT 57.318 32.000 0.00 0.00 0.00 1.82
116 117 7.681939 TTTTAGACGAAATGAGGCAGTATTT 57.318 32.000 0.00 0.00 0.00 1.40
117 118 7.681939 TTTTTAGACGAAATGAGGCAGTATT 57.318 32.000 0.00 0.00 0.00 1.89
146 147 6.576778 AACCCTGAGCCATTTTATAGTACT 57.423 37.500 0.00 0.00 0.00 2.73
147 148 6.262496 GGAAACCCTGAGCCATTTTATAGTAC 59.738 42.308 0.00 0.00 0.00 2.73
148 149 6.069323 TGGAAACCCTGAGCCATTTTATAGTA 60.069 38.462 0.00 0.00 0.00 1.82
150 151 5.200483 TGGAAACCCTGAGCCATTTTATAG 58.800 41.667 0.00 0.00 0.00 1.31
153 154 3.534357 TGGAAACCCTGAGCCATTTTA 57.466 42.857 0.00 0.00 0.00 1.52
154 155 2.397044 TGGAAACCCTGAGCCATTTT 57.603 45.000 0.00 0.00 0.00 1.82
155 156 2.629017 ATGGAAACCCTGAGCCATTT 57.371 45.000 0.00 0.00 37.88 2.32
156 157 2.629017 AATGGAAACCCTGAGCCATT 57.371 45.000 0.00 0.00 44.10 3.16
157 158 3.756082 TTAATGGAAACCCTGAGCCAT 57.244 42.857 0.00 0.00 42.66 4.40
158 159 3.534357 TTTAATGGAAACCCTGAGCCA 57.466 42.857 0.00 0.00 34.45 4.75
159 160 5.656859 AGTATTTTAATGGAAACCCTGAGCC 59.343 40.000 0.00 0.00 0.00 4.70
160 161 6.564328 CAGTATTTTAATGGAAACCCTGAGC 58.436 40.000 0.00 0.00 0.00 4.26
161 162 6.405842 GGCAGTATTTTAATGGAAACCCTGAG 60.406 42.308 0.00 0.00 0.00 3.35
162 163 5.420739 GGCAGTATTTTAATGGAAACCCTGA 59.579 40.000 0.00 0.00 0.00 3.86
163 164 5.422012 AGGCAGTATTTTAATGGAAACCCTG 59.578 40.000 0.00 0.00 0.00 4.45
164 165 5.422012 CAGGCAGTATTTTAATGGAAACCCT 59.578 40.000 0.00 0.00 0.00 4.34
165 166 5.420739 TCAGGCAGTATTTTAATGGAAACCC 59.579 40.000 0.00 0.00 0.00 4.11
166 167 6.524101 TCAGGCAGTATTTTAATGGAAACC 57.476 37.500 0.00 0.00 0.00 3.27
167 168 9.087424 GAAATCAGGCAGTATTTTAATGGAAAC 57.913 33.333 0.00 0.00 0.00 2.78
168 169 7.973388 CGAAATCAGGCAGTATTTTAATGGAAA 59.027 33.333 0.00 0.00 0.00 3.13
169 170 7.122055 ACGAAATCAGGCAGTATTTTAATGGAA 59.878 33.333 0.00 0.00 0.00 3.53
170 171 6.601613 ACGAAATCAGGCAGTATTTTAATGGA 59.398 34.615 0.00 0.00 0.00 3.41
171 172 6.795399 ACGAAATCAGGCAGTATTTTAATGG 58.205 36.000 0.00 0.00 0.00 3.16
172 173 6.912591 GGACGAAATCAGGCAGTATTTTAATG 59.087 38.462 0.00 0.00 0.00 1.90
173 174 6.601613 TGGACGAAATCAGGCAGTATTTTAAT 59.398 34.615 0.00 0.00 0.00 1.40
174 175 5.941058 TGGACGAAATCAGGCAGTATTTTAA 59.059 36.000 0.00 0.00 0.00 1.52
175 176 5.492895 TGGACGAAATCAGGCAGTATTTTA 58.507 37.500 0.00 0.00 0.00 1.52
176 177 4.331968 TGGACGAAATCAGGCAGTATTTT 58.668 39.130 0.00 0.00 0.00 1.82
177 178 3.950397 TGGACGAAATCAGGCAGTATTT 58.050 40.909 0.00 0.00 0.00 1.40
178 179 3.627395 TGGACGAAATCAGGCAGTATT 57.373 42.857 0.00 0.00 0.00 1.89
179 180 3.627395 TTGGACGAAATCAGGCAGTAT 57.373 42.857 0.00 0.00 0.00 2.12
180 181 3.410631 TTTGGACGAAATCAGGCAGTA 57.589 42.857 0.00 0.00 0.00 2.74
181 182 2.270352 TTTGGACGAAATCAGGCAGT 57.730 45.000 0.00 0.00 0.00 4.40
182 183 3.641437 TTTTTGGACGAAATCAGGCAG 57.359 42.857 0.00 0.00 0.00 4.85
209 210 9.640963 CCATGAGCCATTTTATAGTAGTACTAC 57.359 37.037 23.03 23.03 32.84 2.73
210 211 9.375974 ACCATGAGCCATTTTATAGTAGTACTA 57.624 33.333 12.38 12.38 34.82 1.82
211 212 8.263854 ACCATGAGCCATTTTATAGTAGTACT 57.736 34.615 8.14 8.14 0.00 2.73
212 213 8.904099 AACCATGAGCCATTTTATAGTAGTAC 57.096 34.615 0.00 0.00 0.00 2.73
213 214 9.914834 AAAACCATGAGCCATTTTATAGTAGTA 57.085 29.630 0.00 0.00 0.00 1.82
214 215 8.823220 AAAACCATGAGCCATTTTATAGTAGT 57.177 30.769 0.00 0.00 0.00 2.73
215 216 8.902806 TGAAAACCATGAGCCATTTTATAGTAG 58.097 33.333 0.00 0.00 0.00 2.57
216 217 8.815565 TGAAAACCATGAGCCATTTTATAGTA 57.184 30.769 0.00 0.00 0.00 1.82
217 218 7.716799 TGAAAACCATGAGCCATTTTATAGT 57.283 32.000 0.00 0.00 0.00 2.12
274 277 6.308282 CGAATTAATGCTCGTCCTATTCTACC 59.692 42.308 2.07 0.00 0.00 3.18
341 344 1.679305 TGCAGGAGGAGGAGACGAC 60.679 63.158 0.00 0.00 0.00 4.34
342 345 1.679305 GTGCAGGAGGAGGAGACGA 60.679 63.158 0.00 0.00 0.00 4.20
343 346 2.716017 GGTGCAGGAGGAGGAGACG 61.716 68.421 0.00 0.00 0.00 4.18
344 347 1.194781 TTGGTGCAGGAGGAGGAGAC 61.195 60.000 0.00 0.00 0.00 3.36
345 348 1.158466 TTGGTGCAGGAGGAGGAGA 59.842 57.895 0.00 0.00 0.00 3.71
346 349 1.197430 AGTTGGTGCAGGAGGAGGAG 61.197 60.000 0.00 0.00 0.00 3.69
347 350 1.152030 AGTTGGTGCAGGAGGAGGA 60.152 57.895 0.00 0.00 0.00 3.71
379 382 3.798511 GGGGCTAGTGGGACCTGC 61.799 72.222 0.00 0.00 34.11 4.85
381 384 2.285442 GTGGGGCTAGTGGGACCT 60.285 66.667 0.00 0.00 34.11 3.85
384 387 3.326385 ATCCGTGGGGCTAGTGGGA 62.326 63.158 0.00 0.00 0.00 4.37
483 487 3.583276 TAGTGCGTGCCTCGGGTTG 62.583 63.158 0.99 0.00 40.26 3.77
543 559 4.501571 GGGGAGAAGAAATCAATCGATCGA 60.502 45.833 21.86 21.86 0.00 3.59
689 709 1.338200 CCGGGAGAGTTTCCTCACTTG 60.338 57.143 0.00 0.00 45.98 3.16
692 712 1.597461 CCCGGGAGAGTTTCCTCAC 59.403 63.158 18.48 0.00 45.98 3.51
693 713 1.612442 CCCCGGGAGAGTTTCCTCA 60.612 63.158 26.32 0.00 45.98 3.86
795 815 1.742831 CGCCTGCTGGTTTAATTGCTA 59.257 47.619 11.69 0.00 35.27 3.49
796 816 0.527565 CGCCTGCTGGTTTAATTGCT 59.472 50.000 11.69 0.00 35.27 3.91
842 862 0.323629 ATCGACGGCCAAAGGAAAGA 59.676 50.000 2.24 0.00 0.00 2.52
850 870 1.337071 GAGAGATGTATCGACGGCCAA 59.663 52.381 2.24 0.00 0.00 4.52
969 989 1.306482 CCCTGCCTCTCCCTCTCAA 60.306 63.158 0.00 0.00 0.00 3.02
1053 1081 4.803426 GGCCTGTCCGTGAGCGAG 62.803 72.222 0.00 0.00 41.33 5.03
1074 1102 0.035630 AGATGAGGAACTGCTGCCAC 60.036 55.000 0.00 0.00 41.55 5.01
1149 1192 1.653918 AGGGGAGGAGATGGAAGAGAA 59.346 52.381 0.00 0.00 0.00 2.87
1154 1197 0.266152 GAGGAGGGGAGGAGATGGAA 59.734 60.000 0.00 0.00 0.00 3.53
1157 1200 0.178935 GAGGAGGAGGGGAGGAGATG 60.179 65.000 0.00 0.00 0.00 2.90
1159 1202 2.015726 GGAGGAGGAGGGGAGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
1191 1234 1.975407 CACGGACGGGGTAGAGTGT 60.975 63.158 0.00 0.00 0.00 3.55
1200 1243 0.669625 GAAGAAGGAACACGGACGGG 60.670 60.000 0.00 0.00 0.00 5.28
1201 1244 1.007336 CGAAGAAGGAACACGGACGG 61.007 60.000 0.00 0.00 0.00 4.79
1232 1304 7.145985 TGCGAGATCTCCATACTACAATTAAC 58.854 38.462 17.13 0.00 0.00 2.01
1233 1305 7.284919 TGCGAGATCTCCATACTACAATTAA 57.715 36.000 17.13 0.00 0.00 1.40
1234 1306 6.894339 TGCGAGATCTCCATACTACAATTA 57.106 37.500 17.13 0.00 0.00 1.40
1235 1307 5.791336 TGCGAGATCTCCATACTACAATT 57.209 39.130 17.13 0.00 0.00 2.32
1236 1308 5.069119 TGTTGCGAGATCTCCATACTACAAT 59.931 40.000 17.13 0.00 0.00 2.71
1237 1309 4.401202 TGTTGCGAGATCTCCATACTACAA 59.599 41.667 17.13 7.41 0.00 2.41
1238 1310 3.951680 TGTTGCGAGATCTCCATACTACA 59.048 43.478 17.13 13.15 0.00 2.74
1239 1311 4.569761 TGTTGCGAGATCTCCATACTAC 57.430 45.455 17.13 11.03 0.00 2.73
1240 1312 5.791336 AATGTTGCGAGATCTCCATACTA 57.209 39.130 17.13 0.32 0.00 1.82
1274 1346 2.740447 ACGTAAAATCTTGCGACCCTTC 59.260 45.455 0.00 0.00 42.54 3.46
1275 1347 2.774687 ACGTAAAATCTTGCGACCCTT 58.225 42.857 0.00 0.00 42.54 3.95
1277 1349 3.485633 GAAACGTAAAATCTTGCGACCC 58.514 45.455 0.00 0.00 42.54 4.46
1278 1350 3.150731 CGAAACGTAAAATCTTGCGACC 58.849 45.455 0.00 0.00 42.54 4.79
1299 1378 5.990996 TCAAAAGGAAAAATCAATGCACTCC 59.009 36.000 0.00 0.00 0.00 3.85
1319 1398 6.696411 AGTGCAATTAATTCCGGATTTCAAA 58.304 32.000 14.62 5.89 0.00 2.69
1340 1420 9.135843 GTATCTATCTATCGATCGATCCTAGTG 57.864 40.741 32.50 18.80 34.82 2.74
1341 1421 9.085645 AGTATCTATCTATCGATCGATCCTAGT 57.914 37.037 32.50 20.16 34.82 2.57
1353 1433 9.967346 TGGAAAAGAAACAGTATCTATCTATCG 57.033 33.333 0.00 0.00 0.00 2.92
1384 1468 8.211629 AGCCTAGGACGAAGAAAAATAATATGT 58.788 33.333 14.75 0.00 0.00 2.29
1386 1470 8.429641 TCAGCCTAGGACGAAGAAAAATAATAT 58.570 33.333 14.75 0.00 0.00 1.28
1390 1474 5.187186 AGTCAGCCTAGGACGAAGAAAAATA 59.813 40.000 14.75 0.00 40.20 1.40
1391 1475 4.020128 AGTCAGCCTAGGACGAAGAAAAAT 60.020 41.667 14.75 0.00 40.20 1.82
1396 1482 1.004394 TCAGTCAGCCTAGGACGAAGA 59.996 52.381 14.75 6.57 40.20 2.87
1408 1494 1.400888 CGAGTCAGTCAGTCAGTCAGC 60.401 57.143 0.00 0.00 0.00 4.26
1461 1547 0.810031 AACGTGTGCAGAAGCTTCGT 60.810 50.000 20.43 10.82 42.74 3.85
1533 1628 4.784329 TCGAAAACGATAGGAGATCGATG 58.216 43.478 13.45 0.00 43.59 3.84
1569 1664 6.540438 AGGACGGACATAGAATTCAGTTTA 57.460 37.500 8.44 0.00 0.00 2.01
1570 1665 5.420409 GAGGACGGACATAGAATTCAGTTT 58.580 41.667 8.44 0.00 0.00 2.66
1583 1680 4.357947 GCAGCACGAGGACGGACA 62.358 66.667 0.00 0.00 44.46 4.02
1647 1761 1.190984 CGAGCGATCAATCACCAATCG 59.809 52.381 0.00 0.00 43.83 3.34
1663 1777 1.012014 GAGAGTACGTCTCGCGAGC 60.012 63.158 30.97 23.13 46.86 5.03
1709 1831 1.750399 CCATAGCTGCACCACCACC 60.750 63.158 1.02 0.00 0.00 4.61
1710 1832 1.750399 CCCATAGCTGCACCACCAC 60.750 63.158 1.02 0.00 0.00 4.16
1711 1833 2.230653 ACCCATAGCTGCACCACCA 61.231 57.895 1.02 0.00 0.00 4.17
1752 1874 1.079127 CAGCCCCAGGTACACGAAG 60.079 63.158 0.00 0.00 0.00 3.79
1792 1914 0.598065 GGGTTCACCATGTGCTTCAC 59.402 55.000 0.00 0.00 39.85 3.18
1899 2021 3.012518 GGTGGACTTGAACATGATCTGG 58.987 50.000 0.00 0.00 0.00 3.86
1929 2051 4.160736 AGCAGAAATAACTTTGGCGAAC 57.839 40.909 0.00 0.00 0.00 3.95
2014 2136 0.523072 AACACATCTCATGCCGCAAC 59.477 50.000 0.00 0.00 0.00 4.17
2025 2147 3.065786 CACAAGAGCACAACAACACATCT 59.934 43.478 0.00 0.00 0.00 2.90
2031 2153 2.223340 CCTCACACAAGAGCACAACAAC 60.223 50.000 0.00 0.00 34.26 3.32
2032 2154 2.016318 CCTCACACAAGAGCACAACAA 58.984 47.619 0.00 0.00 34.26 2.83
2033 2155 1.209261 TCCTCACACAAGAGCACAACA 59.791 47.619 0.00 0.00 34.26 3.33
2040 2162 4.035675 GGTTCAAGTTTCCTCACACAAGAG 59.964 45.833 0.00 0.00 35.39 2.85
2056 2178 4.357918 TCCCAGAAGAGAAAGGTTCAAG 57.642 45.455 0.00 0.00 0.00 3.02
2057 2179 4.788925 TTCCCAGAAGAGAAAGGTTCAA 57.211 40.909 0.00 0.00 0.00 2.69
2058 2180 4.788925 TTTCCCAGAAGAGAAAGGTTCA 57.211 40.909 0.00 0.00 0.00 3.18
2069 2191 4.221262 TCAAATTGGAGCATTTCCCAGAAG 59.779 41.667 0.00 0.00 46.19 2.85
2108 2230 1.380524 GCAGCTCAGCAGACATCATT 58.619 50.000 0.00 0.00 0.00 2.57
2150 2272 2.784380 CGCTCGAATTAGAGTACTGCAC 59.216 50.000 15.80 0.00 40.26 4.57
2151 2273 2.422479 ACGCTCGAATTAGAGTACTGCA 59.578 45.455 15.80 0.00 40.26 4.41
2152 2274 2.784380 CACGCTCGAATTAGAGTACTGC 59.216 50.000 15.80 2.64 40.26 4.40
2153 2275 4.017380 ACACGCTCGAATTAGAGTACTG 57.983 45.455 15.80 10.98 40.26 2.74
2154 2276 4.698583 AACACGCTCGAATTAGAGTACT 57.301 40.909 15.80 0.00 40.26 2.73
2188 2310 4.719026 AGAGTATGTGTACTATCCCGGA 57.281 45.455 0.73 0.00 41.19 5.14
2190 2316 5.769484 ACAAGAGTATGTGTACTATCCCG 57.231 43.478 0.00 0.00 41.19 5.14
2209 2335 6.537301 CCTACATACTCCGATTTTAGCAACAA 59.463 38.462 0.00 0.00 0.00 2.83
2211 2337 5.465724 CCCTACATACTCCGATTTTAGCAAC 59.534 44.000 0.00 0.00 0.00 4.17
2213 2339 4.502604 GCCCTACATACTCCGATTTTAGCA 60.503 45.833 0.00 0.00 0.00 3.49
2222 2348 1.367840 GCCTGCCCTACATACTCCG 59.632 63.158 0.00 0.00 0.00 4.63
2247 2390 2.285220 AGAATGCGCATATCGACAACAC 59.715 45.455 25.61 5.33 41.67 3.32
2278 2421 4.634004 TGTCGTGCATACCAAATTAAGAGG 59.366 41.667 0.00 0.00 0.00 3.69
2288 2431 0.673333 CAGCCTTGTCGTGCATACCA 60.673 55.000 0.00 0.00 0.00 3.25
2302 2600 7.822334 ACAAAACTAAACTTTTAAAAGCAGCCT 59.178 29.630 24.60 5.17 39.63 4.58
2304 2602 8.869897 AGACAAAACTAAACTTTTAAAAGCAGC 58.130 29.630 24.60 8.17 39.63 5.25
2335 2637 5.163764 CGCTGGCAAAATACTAGACATTTCA 60.164 40.000 0.00 0.00 0.00 2.69
2359 2661 9.755064 CAATGATCATTTGAAAAGCAATTTCTC 57.245 29.630 18.41 5.22 46.27 2.87
2419 2721 2.932614 CACATTCCCTTCGCAGAAGTAG 59.067 50.000 14.33 7.83 45.90 2.57
2504 2813 6.381801 CAGTAAACATTCACATGGGTTTCTC 58.618 40.000 0.00 0.00 35.33 2.87
2560 2869 8.603242 TCAGAAAATTACCAGTAGTCAACTTC 57.397 34.615 0.00 0.00 35.76 3.01
2576 2892 9.455847 CTTCATTTCGACTTTTCTCAGAAAATT 57.544 29.630 13.07 7.74 34.97 1.82
2586 2902 6.136743 GGTCTCAACTTCATTTCGACTTTTC 58.863 40.000 0.00 0.00 0.00 2.29
2653 2969 0.592637 TGCACCGCTGATTGAAACTG 59.407 50.000 0.00 0.00 0.00 3.16
2784 3100 2.125912 ACGAGCATCACCGCTGAC 60.126 61.111 0.00 0.00 44.01 3.51
2967 3283 9.071276 AGAAACATGTAGAAGACATCAAAATGT 57.929 29.630 0.00 0.00 46.33 2.71
2980 3297 9.554395 TTCAATAACTGACAGAAACATGTAGAA 57.446 29.630 10.08 0.00 32.21 2.10
2981 3298 9.725019 ATTCAATAACTGACAGAAACATGTAGA 57.275 29.630 10.08 0.00 32.21 2.59
3002 3319 3.882888 GTGTCAGTGTTCTCCCAATTCAA 59.117 43.478 0.00 0.00 0.00 2.69
3014 3331 4.708177 AGCAAGTATTCAGTGTCAGTGTT 58.292 39.130 7.54 0.22 0.00 3.32
3153 3472 6.263412 ACATGGAGGAGAGATTTTGATCAT 57.737 37.500 0.00 0.00 0.00 2.45
3154 3473 5.705397 ACATGGAGGAGAGATTTTGATCA 57.295 39.130 0.00 0.00 0.00 2.92
3160 3479 5.835280 ACAAAACAACATGGAGGAGAGATTT 59.165 36.000 0.00 0.00 0.00 2.17
3169 3488 5.964958 ATACCTGACAAAACAACATGGAG 57.035 39.130 0.00 0.00 0.00 3.86
3241 3560 7.390823 AGAGTAGTTGATTCTTTCCTCTTTCC 58.609 38.462 0.00 0.00 0.00 3.13
3242 3561 8.840833 AAGAGTAGTTGATTCTTTCCTCTTTC 57.159 34.615 0.00 0.00 30.24 2.62
3243 3562 9.634021 AAAAGAGTAGTTGATTCTTTCCTCTTT 57.366 29.630 0.00 0.00 41.78 2.52
3244 3563 9.061435 CAAAAGAGTAGTTGATTCTTTCCTCTT 57.939 33.333 0.00 0.00 41.78 2.85
3245 3564 8.214364 ACAAAAGAGTAGTTGATTCTTTCCTCT 58.786 33.333 0.00 0.00 41.78 3.69
3246 3565 8.286097 CACAAAAGAGTAGTTGATTCTTTCCTC 58.714 37.037 0.00 0.00 41.78 3.71
3247 3566 7.993183 TCACAAAAGAGTAGTTGATTCTTTCCT 59.007 33.333 0.00 0.00 41.78 3.36
3324 3644 3.397482 AGTGCTGAGATGTCTTGTTGTC 58.603 45.455 0.00 0.00 0.00 3.18
3326 3646 4.309933 TGTAGTGCTGAGATGTCTTGTTG 58.690 43.478 0.00 0.00 0.00 3.33
3338 3658 6.592994 CAGAAGAATGAAGAATGTAGTGCTGA 59.407 38.462 0.00 0.00 0.00 4.26
3365 3685 4.457603 CCGGACAATGTGGTTAGAATCAAA 59.542 41.667 0.00 0.00 0.00 2.69
3374 3694 2.661718 ACTTTTCCGGACAATGTGGTT 58.338 42.857 1.83 0.00 0.00 3.67
3409 3729 6.208797 AGTTAACCAGGAGCACCTTTAAATTC 59.791 38.462 0.00 0.00 45.36 2.17
3418 3738 0.881796 GCAAGTTAACCAGGAGCACC 59.118 55.000 0.88 0.00 0.00 5.01
3459 3779 7.964559 TGTCAGATTAATCTTTTTCAGCAATCG 59.035 33.333 15.49 0.24 34.22 3.34
3496 3816 0.593128 GTACAAGTGCTGCAAGTGGG 59.407 55.000 2.77 0.00 35.30 4.61
3521 3841 1.083015 CTCGAAAACCAACACGGCG 60.083 57.895 4.80 4.80 39.03 6.46
3569 3889 2.265739 GCGATGAGGGACAGCACA 59.734 61.111 0.00 0.00 34.21 4.57
3602 3922 2.162754 CGTTACCATGGCCGTCGTC 61.163 63.158 13.04 0.00 0.00 4.20
3617 3937 4.736896 GCCTTCCTCGCCGTCGTT 62.737 66.667 0.00 0.00 36.96 3.85
3668 3988 1.377725 CTGCTCCGTCATGGGCTTT 60.378 57.895 0.00 0.00 38.76 3.51
3740 4060 2.616765 GCCTTTCTTCTCCTTGTCCTCC 60.617 54.545 0.00 0.00 0.00 4.30
3842 4162 3.118775 TCCAAGTCACCGATCATACCAAG 60.119 47.826 0.00 0.00 0.00 3.61
3907 4227 4.354587 GACAAAGGTTCACAAAAGCAGAG 58.645 43.478 0.00 0.00 0.00 3.35
3990 4310 2.681848 CCATCCTGCAGTCTGATTTGTC 59.318 50.000 13.81 0.00 0.00 3.18
4001 4321 2.104281 TGTGATCATCTCCATCCTGCAG 59.896 50.000 6.78 6.78 0.00 4.41
4012 4332 7.556416 ACATCTAATCCATCTGTGATCATCT 57.444 36.000 0.00 0.00 0.00 2.90
4062 4382 6.701400 TCAGTTGTCCATGATATATTGTCACG 59.299 38.462 0.00 0.00 0.00 4.35
4098 4418 8.742554 ACGAATTTTATGTGATTTTCCACTTC 57.257 30.769 0.00 0.00 37.89 3.01
4154 4479 4.093998 CGGAGGAACATCAAAGATGTCAAG 59.906 45.833 12.53 0.13 0.00 3.02
4182 4507 6.172630 AGGTGTTCTCAAAAGCAAAAACAAT 58.827 32.000 0.00 0.00 0.00 2.71
4184 4509 5.146010 AGGTGTTCTCAAAAGCAAAAACA 57.854 34.783 0.00 0.00 0.00 2.83
4250 4577 8.577296 CGGAGAGAAGTATGGTCAATATTAAGA 58.423 37.037 0.00 0.00 0.00 2.10
4255 4582 5.244178 GGACGGAGAGAAGTATGGTCAATAT 59.756 44.000 0.00 0.00 0.00 1.28
4262 4589 2.036475 CCATGGACGGAGAGAAGTATGG 59.964 54.545 5.56 0.00 0.00 2.74
4278 4605 2.485426 GACATATCACATTCCGCCATGG 59.515 50.000 7.63 7.63 40.09 3.66
4310 4637 3.684908 TCGGGAGATCAAGCAAATGAAA 58.315 40.909 0.00 0.00 32.06 2.69
4343 4670 1.205893 GAACGGAGCAGAGGAGAACAT 59.794 52.381 0.00 0.00 0.00 2.71
4350 4677 1.515020 CAGAGGAACGGAGCAGAGG 59.485 63.158 0.00 0.00 0.00 3.69
4372 4699 2.353269 CACCGTTTCAAACTGTGCAGTA 59.647 45.455 11.35 0.00 41.58 2.74
4398 4725 3.683802 AGGCAAGAACTTCAAGAGATGG 58.316 45.455 0.00 0.00 0.00 3.51
4405 4732 4.516698 CAGAGCTTTAGGCAAGAACTTCAA 59.483 41.667 0.00 0.00 44.79 2.69
4406 4733 4.067896 CAGAGCTTTAGGCAAGAACTTCA 58.932 43.478 0.00 0.00 44.79 3.02
4411 4738 5.316167 TGATTTCAGAGCTTTAGGCAAGAA 58.684 37.500 0.00 0.00 44.79 2.52
4449 4782 3.681897 GTGAGAGTTACATGTGCAAGAGG 59.318 47.826 9.11 0.00 0.00 3.69
4463 4796 1.421646 CCACCAAAGGGAGTGAGAGTT 59.578 52.381 0.00 0.00 36.01 3.01
4480 4813 9.455847 GCATAATTGAGATAAAATCTTCACCAC 57.544 33.333 0.00 0.00 40.38 4.16
4502 4835 2.670905 CTGTTCGTGATTTGGACGCATA 59.329 45.455 0.00 0.00 36.75 3.14
4508 4841 3.872182 TCGAAAACTGTTCGTGATTTGGA 59.128 39.130 8.19 0.00 42.09 3.53
4517 4850 6.302313 GGAAACACAATATCGAAAACTGTTCG 59.698 38.462 2.14 2.14 42.74 3.95
4522 4855 6.208599 ACATGGGAAACACAATATCGAAAACT 59.791 34.615 0.00 0.00 0.00 2.66
4532 4865 7.415541 CGAATATCTCAACATGGGAAACACAAT 60.416 37.037 0.00 0.00 26.19 2.71
4536 4869 5.739959 TCGAATATCTCAACATGGGAAACA 58.260 37.500 0.00 0.00 26.19 2.83
4538 4871 7.880160 ATTTCGAATATCTCAACATGGGAAA 57.120 32.000 0.00 0.00 26.19 3.13
4575 4908 8.907222 AAAAAGTAGTTCGTCCAAACCTATTA 57.093 30.769 0.00 0.00 0.00 0.98
4610 4943 2.439507 TCCTGTTTCTTCTGCTTCTGGT 59.560 45.455 0.00 0.00 0.00 4.00
4611 4944 3.131709 TCCTGTTTCTTCTGCTTCTGG 57.868 47.619 0.00 0.00 0.00 3.86
4622 4955 7.713073 TGTTTTTGTTCTTTGTTTCCTGTTTCT 59.287 29.630 0.00 0.00 0.00 2.52
4623 4956 7.856556 TGTTTTTGTTCTTTGTTTCCTGTTTC 58.143 30.769 0.00 0.00 0.00 2.78
4627 4960 6.371271 ACCATGTTTTTGTTCTTTGTTTCCTG 59.629 34.615 0.00 0.00 0.00 3.86
4652 4985 4.159879 TGTTTCCCGAAAAGTAAAAAGGCA 59.840 37.500 0.00 0.00 31.33 4.75
4653 4986 4.505191 GTGTTTCCCGAAAAGTAAAAAGGC 59.495 41.667 0.00 0.00 31.33 4.35
4654 4987 5.652518 TGTGTTTCCCGAAAAGTAAAAAGG 58.347 37.500 0.00 0.00 31.33 3.11
4655 4988 6.327154 ACTGTGTTTCCCGAAAAGTAAAAAG 58.673 36.000 0.00 0.00 31.33 2.27
4656 4989 6.270156 ACTGTGTTTCCCGAAAAGTAAAAA 57.730 33.333 0.00 0.00 31.33 1.94
4657 4990 5.447548 CGACTGTGTTTCCCGAAAAGTAAAA 60.448 40.000 0.00 0.00 31.33 1.52
4658 4991 4.034279 CGACTGTGTTTCCCGAAAAGTAAA 59.966 41.667 0.00 0.00 31.33 2.01
4659 4992 3.556775 CGACTGTGTTTCCCGAAAAGTAA 59.443 43.478 0.00 0.00 31.33 2.24
4668 5014 2.702847 AAGCACGACTGTGTTTCCC 58.297 52.632 0.00 0.00 44.98 3.97
4675 5021 0.179121 TCACGTTGAAGCACGACTGT 60.179 50.000 0.90 0.00 43.15 3.55
4699 5045 5.401550 TCTGAAAAGTCAAAAGCACAGTTG 58.598 37.500 0.00 0.00 31.88 3.16
4701 5047 5.643379 TTCTGAAAAGTCAAAAGCACAGT 57.357 34.783 0.00 0.00 31.88 3.55
4707 5053 6.587608 AGTTGTGCTTTCTGAAAAGTCAAAAG 59.412 34.615 4.18 0.00 43.23 2.27
4740 5086 6.254589 CACAAACATGCTTTCCGAAAAAGTAA 59.745 34.615 10.62 2.74 0.00 2.24
4784 5130 3.251729 AGCACACAGTATGAAAAGCACTG 59.748 43.478 0.00 0.00 44.20 3.66
4800 5146 3.944422 TTTTTCTCTCGTGAAGCACAC 57.056 42.857 4.35 4.35 45.11 3.82
4821 5167 5.532779 GTGTTCTGAGGGAAAGAAAATCTGT 59.467 40.000 0.00 0.00 35.50 3.41
4822 5168 5.048434 GGTGTTCTGAGGGAAAGAAAATCTG 60.048 44.000 0.00 0.00 35.50 2.90
4823 5169 5.073428 GGTGTTCTGAGGGAAAGAAAATCT 58.927 41.667 0.00 0.00 35.50 2.40
4824 5170 5.073428 AGGTGTTCTGAGGGAAAGAAAATC 58.927 41.667 0.00 0.00 35.50 2.17
4825 5171 5.066913 AGGTGTTCTGAGGGAAAGAAAAT 57.933 39.130 0.00 0.00 35.50 1.82
4826 5172 4.519906 AGGTGTTCTGAGGGAAAGAAAA 57.480 40.909 0.00 0.00 35.50 2.29
4827 5173 4.041691 CCTAGGTGTTCTGAGGGAAAGAAA 59.958 45.833 0.00 0.00 35.50 2.52
4828 5174 3.583086 CCTAGGTGTTCTGAGGGAAAGAA 59.417 47.826 0.00 0.00 35.51 2.52
4829 5175 3.173965 CCTAGGTGTTCTGAGGGAAAGA 58.826 50.000 0.00 0.00 35.51 2.52
4830 5176 3.173965 TCCTAGGTGTTCTGAGGGAAAG 58.826 50.000 9.08 0.00 35.51 2.62
4831 5177 3.269592 TCCTAGGTGTTCTGAGGGAAA 57.730 47.619 9.08 0.00 35.51 3.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.