Multiple sequence alignment - TraesCS5A01G521400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G521400 chr5A 100.000 2333 0 0 1 2333 682618626 682616294 0.000000e+00 4309.0
1 TraesCS5A01G521400 chr4D 90.962 1195 65 20 348 1525 501506991 501508159 0.000000e+00 1568.0
2 TraesCS5A01G521400 chr4D 89.325 815 47 14 1525 2333 501508321 501509101 0.000000e+00 987.0
3 TraesCS5A01G521400 chr4D 87.845 362 25 5 1 351 501502697 501503050 7.760000e-110 407.0
4 TraesCS5A01G521400 chr4D 79.060 234 28 11 1088 1321 474916382 474916594 8.690000e-30 141.0
5 TraesCS5A01G521400 chr4D 84.146 82 11 2 1740 1820 365138028 365137948 6.910000e-11 78.7
6 TraesCS5A01G521400 chr4D 85.294 68 9 1 1744 1810 454765266 454765199 4.160000e-08 69.4
7 TraesCS5A01G521400 chr4B 86.160 1409 125 38 930 2295 645457816 645459197 0.000000e+00 1458.0
8 TraesCS5A01G521400 chr4B 87.919 745 57 15 147 876 645456994 645457720 0.000000e+00 846.0
9 TraesCS5A01G521400 chr4B 85.232 237 35 0 1088 1324 599399809 599399573 6.440000e-61 244.0
10 TraesCS5A01G521400 chr4B 78.453 181 23 13 1638 1810 34882627 34882799 1.140000e-18 104.0
11 TraesCS5A01G521400 chr4B 89.231 65 7 0 1640 1704 146472073 146472137 5.340000e-12 82.4
12 TraesCS5A01G521400 chr4B 78.862 123 20 5 1640 1756 574168682 574168560 6.910000e-11 78.7
13 TraesCS5A01G521400 chr4A 85.654 237 34 0 1088 1324 681182631 681182395 1.380000e-62 250.0
14 TraesCS5A01G521400 chr4A 83.750 80 7 5 1741 1817 100566422 100566498 1.160000e-08 71.3
15 TraesCS5A01G521400 chr2D 84.034 238 38 0 1087 1324 17025136 17024899 1.800000e-56 230.0
16 TraesCS5A01G521400 chr2D 80.102 196 29 7 1605 1793 10719543 10719351 1.120000e-28 137.0
17 TraesCS5A01G521400 chr2D 80.814 172 23 8 1630 1794 554551342 554551510 2.430000e-25 126.0
18 TraesCS5A01G521400 chr2D 87.097 62 8 0 1640 1701 61333377 61333316 1.160000e-08 71.3
19 TraesCS5A01G521400 chr6D 76.757 185 32 7 1640 1815 13969567 13969385 2.470000e-15 93.5
20 TraesCS5A01G521400 chr7D 76.875 160 31 4 1640 1793 56405548 56405389 4.130000e-13 86.1
21 TraesCS5A01G521400 chr1A 76.875 160 31 4 1640 1793 321187449 321187608 4.130000e-13 86.1
22 TraesCS5A01G521400 chr7B 82.222 90 14 2 1891 1979 66507315 66507403 2.490000e-10 76.8
23 TraesCS5A01G521400 chr6B 75.625 160 33 5 1640 1793 568468736 568468577 8.940000e-10 75.0
24 TraesCS5A01G521400 chr2A 89.474 57 6 0 1640 1696 337857980 337858036 3.220000e-09 73.1
25 TraesCS5A01G521400 chr7A 89.796 49 5 0 1915 1963 636898812 636898764 1.940000e-06 63.9
26 TraesCS5A01G521400 chr1D 100.000 29 0 0 1764 1792 361490213 361490185 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G521400 chr5A 682616294 682618626 2332 True 4309.000000 4309 100.000000 1 2333 1 chr5A.!!$R1 2332
1 TraesCS5A01G521400 chr4D 501502697 501509101 6404 False 987.333333 1568 89.377333 1 2333 3 chr4D.!!$F2 2332
2 TraesCS5A01G521400 chr4B 645456994 645459197 2203 False 1152.000000 1458 87.039500 147 2295 2 chr4B.!!$F3 2148

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 4504 0.534412 GACTAGCTTGCAGGAGAGCA 59.466 55.0 10.57 0.0 43.99 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1477 5495 1.073177 ATTTACTACGGTGCACACGC 58.927 50.0 20.43 0.0 39.24 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 1.486726 ACTAGGGCGAGAAGAAATGGG 59.513 52.381 0.00 0.00 0.00 4.00
69 70 1.477685 GGGTCTTCTTCGGTGGTGGA 61.478 60.000 0.00 0.00 0.00 4.02
79 80 2.034221 GTGGTGGAGGTGGAAGGC 59.966 66.667 0.00 0.00 0.00 4.35
89 90 1.566018 GGTGGAAGGCAAACGTCTCG 61.566 60.000 0.00 0.00 0.00 4.04
100 101 0.953960 AACGTCTCGCCAAATGGGAC 60.954 55.000 0.90 0.00 40.01 4.46
103 104 2.267642 CTCGCCAAATGGGACCGA 59.732 61.111 0.90 1.35 40.01 4.69
125 126 5.431765 GAACCAAGGCATGATCTTCTTCTA 58.568 41.667 0.00 0.00 0.00 2.10
136 137 5.052481 TGATCTTCTTCTAATGGCATGACG 58.948 41.667 0.00 0.00 0.00 4.35
144 145 1.561769 AATGGCATGACGTCCCCTCA 61.562 55.000 14.12 7.13 0.00 3.86
145 146 1.561769 ATGGCATGACGTCCCCTCAA 61.562 55.000 14.12 0.00 0.00 3.02
216 222 6.654582 ACATTGTTCCTTTTGCTTCTTTGTTT 59.345 30.769 0.00 0.00 0.00 2.83
223 229 5.748630 CCTTTTGCTTCTTTGTTTGTAGTCC 59.251 40.000 0.00 0.00 0.00 3.85
342 354 2.167662 CGGCCCCTGTTCTACAAAAAT 58.832 47.619 0.00 0.00 0.00 1.82
385 4341 7.373778 ACCGACATAATCTAAAAGTTTGGAC 57.626 36.000 0.00 0.00 30.28 4.02
486 4442 2.365582 GTGGTCACCGGAAATAGCAAT 58.634 47.619 9.46 0.00 0.00 3.56
487 4443 3.537580 GTGGTCACCGGAAATAGCAATA 58.462 45.455 9.46 0.00 0.00 1.90
488 4444 4.134563 GTGGTCACCGGAAATAGCAATAT 58.865 43.478 9.46 0.00 0.00 1.28
548 4504 0.534412 GACTAGCTTGCAGGAGAGCA 59.466 55.000 10.57 0.00 43.99 4.26
593 4549 3.141398 GCAAGATGGACAAGTGACAAGA 58.859 45.455 0.00 0.00 0.00 3.02
594 4550 3.755378 GCAAGATGGACAAGTGACAAGAT 59.245 43.478 0.00 0.00 0.00 2.40
597 4553 4.829968 AGATGGACAAGTGACAAGATGAG 58.170 43.478 0.00 0.00 0.00 2.90
599 4555 3.995199 TGGACAAGTGACAAGATGAGAC 58.005 45.455 0.00 0.00 0.00 3.36
643 4599 0.729116 GCAGATACATGCACTTGCGT 59.271 50.000 0.00 0.00 45.77 5.24
684 4640 1.081242 CCAACTCCAACGCATGTGC 60.081 57.895 6.08 0.00 37.78 4.57
764 4727 2.286067 GGGAGATACTCACGTAACGTCG 60.286 54.545 0.00 0.00 38.32 5.12
774 4737 1.291272 GTAACGTCGGCCTCCACTT 59.709 57.895 0.00 0.00 0.00 3.16
798 4761 1.127951 CCCGACGAACATTCTTTTCCG 59.872 52.381 0.00 0.00 0.00 4.30
839 4804 3.730963 GCTAAAACCAGCCGCAACTATTC 60.731 47.826 0.00 0.00 35.40 1.75
841 4806 0.679960 AACCAGCCGCAACTATTCCC 60.680 55.000 0.00 0.00 0.00 3.97
995 5002 1.145819 CAGCCAGCTAGAGAAGGGC 59.854 63.158 0.80 0.80 44.92 5.19
996 5003 2.069430 AGCCAGCTAGAGAAGGGCC 61.069 63.158 5.42 0.00 45.72 5.80
997 5004 2.818132 CCAGCTAGAGAAGGGCCG 59.182 66.667 0.00 0.00 0.00 6.13
998 5005 2.801631 CCAGCTAGAGAAGGGCCGG 61.802 68.421 0.00 0.00 0.00 6.13
999 5006 2.444895 AGCTAGAGAAGGGCCGGG 60.445 66.667 2.18 0.00 0.00 5.73
1125 5132 3.148279 ACCGGCGAGAGGATGACC 61.148 66.667 9.30 0.00 0.00 4.02
1236 5243 1.371022 CGGCATCGACCTCATCTCG 60.371 63.158 0.00 0.00 39.00 4.04
1284 5291 0.320073 CCACCCACATGTACGACGTT 60.320 55.000 5.50 0.00 0.00 3.99
1333 5340 1.055338 CGTCGACGTCCCAAGTTAAC 58.945 55.000 29.08 0.00 34.11 2.01
1350 5357 1.546961 AACTGACCTACTCCACTCCG 58.453 55.000 0.00 0.00 0.00 4.63
1378 5385 4.859629 ACGTCGCCTTTGATCTTTTATC 57.140 40.909 0.00 0.00 0.00 1.75
1385 5392 5.050972 CGCCTTTGATCTTTTATCCGACTAC 60.051 44.000 0.00 0.00 0.00 2.73
1386 5393 6.049790 GCCTTTGATCTTTTATCCGACTACT 58.950 40.000 0.00 0.00 0.00 2.57
1405 5419 4.939052 ACTATGTGTGTGCTATACTCCC 57.061 45.455 0.00 0.00 0.00 4.30
1499 5517 2.477375 CGTGTGCACCGTAGTAAATTGT 59.523 45.455 15.69 0.00 0.00 2.71
1503 5521 6.245724 GTGTGCACCGTAGTAAATTGTAATC 58.754 40.000 15.69 0.00 0.00 1.75
1537 5717 0.755327 GGTTTGTGTGGGCCTGAAGT 60.755 55.000 4.53 0.00 0.00 3.01
1586 5779 4.107622 GCACATTTGCTGGTCATATTCAC 58.892 43.478 0.00 0.00 46.17 3.18
1601 5794 8.094548 GGTCATATTCACACAGCCATATACTAA 58.905 37.037 0.00 0.00 0.00 2.24
1602 5795 9.489084 GTCATATTCACACAGCCATATACTAAA 57.511 33.333 0.00 0.00 0.00 1.85
1606 5799 7.801716 TTCACACAGCCATATACTAAAATCC 57.198 36.000 0.00 0.00 0.00 3.01
1613 5808 5.250774 AGCCATATACTAAAATCCATCCGGT 59.749 40.000 0.00 0.00 0.00 5.28
1623 5818 7.884354 ACTAAAATCCATCCGGTTTTACTTGTA 59.116 33.333 0.00 0.00 33.83 2.41
1637 5832 9.467258 GGTTTTACTTGTACCCTCATTTTAAAC 57.533 33.333 0.00 0.00 0.00 2.01
1815 6021 2.410939 GTGAGACTAACAAACCCGGAC 58.589 52.381 0.73 0.00 0.00 4.79
1820 6026 0.320073 CTAACAAACCCGGACGCAGA 60.320 55.000 0.73 0.00 0.00 4.26
2036 6248 9.897744 CCTATTTGCATATACGTTGATCAAATT 57.102 29.630 10.35 2.40 35.26 1.82
2039 6251 8.978564 TTTGCATATACGTTGATCAAATTGTT 57.021 26.923 10.35 3.90 0.00 2.83
2126 6338 8.085720 TCAATTCTTTTGCACATATTGGTTTG 57.914 30.769 0.00 0.00 0.00 2.93
2148 6364 3.487544 GCCACTAATTTTCTCGGCATGTC 60.488 47.826 0.00 0.00 39.38 3.06
2212 6429 2.286654 GCATTGCGGTTCTGCTAAGATC 60.287 50.000 5.23 0.00 35.36 2.75
2295 6515 7.290813 TGTTAGAGCAATCCTATCAGAGTAGA 58.709 38.462 0.00 0.00 0.00 2.59
2297 6517 4.759693 AGAGCAATCCTATCAGAGTAGACG 59.240 45.833 0.00 0.00 0.00 4.18
2307 6527 5.661056 ATCAGAGTAGACGAAATGGTTCA 57.339 39.130 0.00 0.00 32.89 3.18
2310 6530 6.464222 TCAGAGTAGACGAAATGGTTCAATT 58.536 36.000 0.00 0.00 32.89 2.32
2316 6536 9.661563 AGTAGACGAAATGGTTCAATTGTTATA 57.338 29.630 5.13 0.00 32.89 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.528743 CGCATGCGGCAAGGTAGAG 61.529 63.158 31.99 0.00 45.17 2.43
52 53 0.037232 CCTCCACCACCGAAGAAGAC 60.037 60.000 0.00 0.00 0.00 3.01
62 63 2.034221 GCCTTCCACCTCCACCAC 59.966 66.667 0.00 0.00 0.00 4.16
69 70 0.250338 GAGACGTTTGCCTTCCACCT 60.250 55.000 0.00 0.00 0.00 4.00
79 80 0.109781 CCCATTTGGCGAGACGTTTG 60.110 55.000 0.00 0.00 0.00 2.93
89 90 1.182385 TTGGTTCGGTCCCATTTGGC 61.182 55.000 0.00 0.00 0.00 4.52
100 101 1.672881 GAAGATCATGCCTTGGTTCGG 59.327 52.381 5.15 0.00 0.00 4.30
103 104 4.313020 AGAAGAAGATCATGCCTTGGTT 57.687 40.909 5.15 0.24 0.00 3.67
125 126 1.224592 GAGGGGACGTCATGCCATT 59.775 57.895 18.91 1.78 41.79 3.16
136 137 2.106684 AGACCAAGTCTTTTGAGGGGAC 59.893 50.000 0.00 0.00 40.28 4.46
144 145 4.226168 CCAGAGGGATAGACCAAGTCTTTT 59.774 45.833 2.05 0.00 39.20 2.27
145 146 3.777522 CCAGAGGGATAGACCAAGTCTTT 59.222 47.826 2.05 0.00 39.20 2.52
216 222 6.113411 GCTAAAGGAAAGCTAATGGACTACA 58.887 40.000 0.00 0.00 37.01 2.74
223 229 9.860898 ATAAAAACTGCTAAAGGAAAGCTAATG 57.139 29.630 0.00 0.00 40.73 1.90
282 288 9.054922 ACCACAATTTTCAACCAAAAGATAATG 57.945 29.630 0.00 0.00 37.40 1.90
342 354 4.636648 TCGGTTGCTTGAAAACTAAACAGA 59.363 37.500 0.00 0.00 0.00 3.41
385 4341 6.067263 AGAGATCTTTAACAGCTACGCTAG 57.933 41.667 0.00 0.00 36.40 3.42
428 4384 5.357742 AAGGCAGGACAATTCTTTTGTTT 57.642 34.783 0.00 0.00 31.96 2.83
443 4399 0.820891 ACAGCTGTGTCAAAGGCAGG 60.821 55.000 20.97 0.00 26.76 4.85
444 4400 0.309922 CACAGCTGTGTCAAAGGCAG 59.690 55.000 34.04 8.79 40.96 4.85
445 4401 2.407268 CACAGCTGTGTCAAAGGCA 58.593 52.632 34.04 0.00 40.96 4.75
474 4430 6.183359 CGCCGCTATATATATTGCTATTTCCG 60.183 42.308 21.53 12.90 33.31 4.30
481 4437 3.123804 GTGCGCCGCTATATATATTGCT 58.876 45.455 21.53 0.00 33.31 3.91
593 4549 1.013596 CTCGTCGCTCTCTGTCTCAT 58.986 55.000 0.00 0.00 0.00 2.90
594 4550 1.021920 CCTCGTCGCTCTCTGTCTCA 61.022 60.000 0.00 0.00 0.00 3.27
597 4553 2.101380 GCCTCGTCGCTCTCTGTC 59.899 66.667 0.00 0.00 0.00 3.51
599 4555 1.075425 CTTTGCCTCGTCGCTCTCTG 61.075 60.000 0.00 0.00 0.00 3.35
624 4580 3.521534 CGCAAGTGCATGTATCTGC 57.478 52.632 3.87 9.18 42.21 4.26
684 4640 2.094659 CCGGTGCTCTGTACTTGCG 61.095 63.158 0.00 0.00 0.00 4.85
707 4663 3.414700 CTCGTGCACTGCCGTTCC 61.415 66.667 16.19 0.00 0.00 3.62
708 4664 2.355837 TCTCGTGCACTGCCGTTC 60.356 61.111 16.19 0.00 0.00 3.95
715 4671 0.747255 AGAGTGTTGTCTCGTGCACT 59.253 50.000 16.19 0.00 43.85 4.40
716 4672 0.855349 CAGAGTGTTGTCTCGTGCAC 59.145 55.000 6.82 6.82 39.21 4.57
717 4673 0.875908 GCAGAGTGTTGTCTCGTGCA 60.876 55.000 0.00 0.00 37.90 4.57
718 4674 0.598680 AGCAGAGTGTTGTCTCGTGC 60.599 55.000 0.00 0.00 39.21 5.34
720 4676 0.598680 GCAGCAGAGTGTTGTCTCGT 60.599 55.000 0.00 0.00 39.21 4.18
721 4677 1.612469 CGCAGCAGAGTGTTGTCTCG 61.612 60.000 0.00 0.00 39.21 4.04
722 4678 0.598680 ACGCAGCAGAGTGTTGTCTC 60.599 55.000 0.00 0.00 30.85 3.36
723 4679 0.598680 GACGCAGCAGAGTGTTGTCT 60.599 55.000 0.00 0.00 30.85 3.41
780 4743 2.729882 AGTCGGAAAAGAATGTTCGTCG 59.270 45.455 0.00 0.00 31.32 5.12
798 4761 1.673329 GCCTCTCCCGTCTTTTCAGTC 60.673 57.143 0.00 0.00 0.00 3.51
839 4804 2.045926 CGGGTGCTCCTCTTTGGG 60.046 66.667 4.53 0.00 36.20 4.12
841 4806 2.555199 CTATTCGGGTGCTCCTCTTTG 58.445 52.381 4.53 0.00 0.00 2.77
886 4851 5.658634 AGACAAGTGCACCATCTAGATTCTA 59.341 40.000 14.63 0.00 0.00 2.10
887 4852 4.469227 AGACAAGTGCACCATCTAGATTCT 59.531 41.667 14.63 0.00 0.00 2.40
888 4853 4.764172 AGACAAGTGCACCATCTAGATTC 58.236 43.478 14.63 0.00 0.00 2.52
889 4854 4.833478 AGACAAGTGCACCATCTAGATT 57.167 40.909 14.63 0.00 0.00 2.40
890 4855 4.100189 GGTAGACAAGTGCACCATCTAGAT 59.900 45.833 14.63 0.00 0.00 1.98
891 4856 3.447586 GGTAGACAAGTGCACCATCTAGA 59.552 47.826 14.63 0.00 0.00 2.43
931 4923 4.410228 AGCAGGGGTGGTGCATATATATAG 59.590 45.833 0.00 0.00 43.82 1.31
995 5002 2.186903 CCGAACCAGACATCCCGG 59.813 66.667 0.00 0.00 0.00 5.73
996 5003 2.186903 CCCGAACCAGACATCCCG 59.813 66.667 0.00 0.00 0.00 5.14
997 5004 2.124695 GCCCGAACCAGACATCCC 60.125 66.667 0.00 0.00 0.00 3.85
998 5005 1.153349 GAGCCCGAACCAGACATCC 60.153 63.158 0.00 0.00 0.00 3.51
999 5006 1.519455 CGAGCCCGAACCAGACATC 60.519 63.158 0.00 0.00 38.22 3.06
1284 5291 1.006571 GTCGCGGTTCTTGAGGACA 60.007 57.895 6.13 0.00 0.00 4.02
1333 5340 3.267908 ACGGAGTGGAGTAGGTCAG 57.732 57.895 0.00 0.00 42.51 3.51
1378 5385 2.941453 AGCACACACATAGTAGTCGG 57.059 50.000 0.00 0.00 0.00 4.79
1385 5392 3.006967 GGGGGAGTATAGCACACACATAG 59.993 52.174 0.00 0.00 0.00 2.23
1386 5393 2.969950 GGGGGAGTATAGCACACACATA 59.030 50.000 0.00 0.00 0.00 2.29
1405 5419 2.738314 GCAAATGCAAAAGCACTTAGGG 59.262 45.455 0.00 0.00 41.59 3.53
1477 5495 1.073177 ATTTACTACGGTGCACACGC 58.927 50.000 20.43 0.00 39.24 5.34
1484 5502 6.468956 ACGTACGATTACAATTTACTACGGTG 59.531 38.462 24.41 0.00 32.07 4.94
1485 5503 6.468956 CACGTACGATTACAATTTACTACGGT 59.531 38.462 24.41 0.00 32.07 4.83
1499 5517 4.700268 ACCATACACACACGTACGATTA 57.300 40.909 24.41 3.71 0.00 1.75
1503 5521 2.796031 ACAAACCATACACACACGTACG 59.204 45.455 15.01 15.01 0.00 3.67
1537 5717 2.638480 AGCTAACAAAGGCTGTCACA 57.362 45.000 0.00 0.00 37.23 3.58
1586 5779 6.092670 CGGATGGATTTTAGTATATGGCTGTG 59.907 42.308 0.00 0.00 0.00 3.66
1601 5794 5.416639 GGTACAAGTAAAACCGGATGGATTT 59.583 40.000 9.46 3.86 42.32 2.17
1602 5795 4.945543 GGTACAAGTAAAACCGGATGGATT 59.054 41.667 9.46 0.00 39.21 3.01
1604 5797 3.307621 GGGTACAAGTAAAACCGGATGGA 60.308 47.826 9.46 0.00 39.21 3.41
1605 5798 3.011818 GGGTACAAGTAAAACCGGATGG 58.988 50.000 9.46 0.00 42.84 3.51
1606 5799 3.937079 GAGGGTACAAGTAAAACCGGATG 59.063 47.826 9.46 0.00 33.89 3.51
1699 5897 4.857871 TTGACTCGTTCAAAGTGTTCAG 57.142 40.909 0.53 0.00 41.51 3.02
1736 5940 7.548780 GGCCACAAAAATGTTAATACATGTCAT 59.451 33.333 0.00 0.00 44.14 3.06
1757 5961 3.951775 TTTGACCACATATTTGGCCAC 57.048 42.857 3.88 1.32 40.77 5.01
1758 5962 5.495926 AAATTTGACCACATATTTGGCCA 57.504 34.783 0.00 0.00 40.77 5.36
1759 5963 5.936956 TCAAAATTTGACCACATATTTGGCC 59.063 36.000 7.86 0.00 40.77 5.36
1805 6011 2.280524 TGTCTGCGTCCGGGTTTG 60.281 61.111 0.00 0.00 0.00 2.93
1815 6021 7.987268 TGAACTCTAATAAATACTGTCTGCG 57.013 36.000 0.00 0.00 0.00 5.18
2122 6334 3.242518 GCCGAGAAAATTAGTGGCAAAC 58.757 45.455 0.00 0.00 42.03 2.93
2126 6338 2.423538 ACATGCCGAGAAAATTAGTGGC 59.576 45.455 0.00 0.00 42.76 5.01
2148 6364 2.001872 GCAATGGAAATCAAAAGCGGG 58.998 47.619 0.00 0.00 0.00 6.13
2188 6405 1.305219 TAGCAGAACCGCAATGCCAC 61.305 55.000 0.00 0.00 40.89 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.