Multiple sequence alignment - TraesCS5A01G520700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G520700 chr5A 100.000 4271 0 0 1 4271 681383745 681388015 0.000000e+00 7888
1 TraesCS5A01G520700 chr5A 83.299 491 79 3 3781 4271 199145449 199144962 2.340000e-122 449
2 TraesCS5A01G520700 chr4B 91.929 3370 163 57 215 3529 644093654 644096969 0.000000e+00 4615
3 TraesCS5A01G520700 chr4B 90.428 491 46 1 3781 4271 411773933 411773444 0.000000e+00 645
4 TraesCS5A01G520700 chr4D 92.353 3086 128 44 663 3696 500467631 500470660 0.000000e+00 4292
5 TraesCS5A01G520700 chr4D 83.984 487 77 1 3781 4267 121932890 121932405 2.330000e-127 466
6 TraesCS5A01G520700 chr4D 77.524 307 42 17 197 499 500467187 500467470 4.420000e-35 159
7 TraesCS5A01G520700 chr1A 80.655 2259 373 48 1026 3252 338214832 338217058 0.000000e+00 1692
8 TraesCS5A01G520700 chr1A 84.318 491 77 0 3781 4271 351596757 351596267 8.310000e-132 481
9 TraesCS5A01G520700 chr1A 73.239 426 95 18 2458 2878 423908720 423909131 2.070000e-28 137
10 TraesCS5A01G520700 chr1B 80.258 2249 380 50 1036 3252 350025925 350028141 0.000000e+00 1635
11 TraesCS5A01G520700 chr1B 78.376 1244 237 26 1871 3095 570299139 570300369 0.000000e+00 778
12 TraesCS5A01G520700 chr1B 83.309 695 109 5 1439 2131 350053831 350054520 6.020000e-178 634
13 TraesCS5A01G520700 chr1B 84.649 228 30 4 3026 3252 350055883 350056106 5.560000e-54 222
14 TraesCS5A01G520700 chr1D 80.150 2262 382 52 1026 3252 261841857 261839628 0.000000e+00 1628
15 TraesCS5A01G520700 chr7B 78.883 1397 268 20 1871 3252 516800388 516799004 0.000000e+00 920
16 TraesCS5A01G520700 chr7B 78.842 1399 265 23 1871 3252 656196068 656197452 0.000000e+00 915
17 TraesCS5A01G520700 chr2B 78.740 1397 270 20 1871 3252 467877234 467875850 0.000000e+00 909
18 TraesCS5A01G520700 chr2B 84.600 487 75 0 3781 4267 540313541 540313055 6.420000e-133 484
19 TraesCS5A01G520700 chr6B 89.633 627 63 2 1164 1789 520782141 520782766 0.000000e+00 797
20 TraesCS5A01G520700 chr6B 91.358 405 26 4 1782 2186 520783108 520783503 2.900000e-151 545
21 TraesCS5A01G520700 chr5D 85.947 491 69 0 3781 4271 502652982 502652492 3.780000e-145 525
22 TraesCS5A01G520700 chr2D 84.921 504 72 2 3770 4269 482055559 482055056 1.370000e-139 507
23 TraesCS5A01G520700 chr4A 84.540 511 69 7 3768 4271 489823435 489822928 8.250000e-137 497
24 TraesCS5A01G520700 chr4A 84.189 487 77 0 3781 4267 275460915 275461401 1.390000e-129 473


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G520700 chr5A 681383745 681388015 4270 False 7888.0 7888 100.0000 1 4271 1 chr5A.!!$F1 4270
1 TraesCS5A01G520700 chr4B 644093654 644096969 3315 False 4615.0 4615 91.9290 215 3529 1 chr4B.!!$F1 3314
2 TraesCS5A01G520700 chr4D 500467187 500470660 3473 False 2225.5 4292 84.9385 197 3696 2 chr4D.!!$F1 3499
3 TraesCS5A01G520700 chr1A 338214832 338217058 2226 False 1692.0 1692 80.6550 1026 3252 1 chr1A.!!$F1 2226
4 TraesCS5A01G520700 chr1B 350025925 350028141 2216 False 1635.0 1635 80.2580 1036 3252 1 chr1B.!!$F1 2216
5 TraesCS5A01G520700 chr1B 570299139 570300369 1230 False 778.0 778 78.3760 1871 3095 1 chr1B.!!$F2 1224
6 TraesCS5A01G520700 chr1B 350053831 350056106 2275 False 428.0 634 83.9790 1439 3252 2 chr1B.!!$F3 1813
7 TraesCS5A01G520700 chr1D 261839628 261841857 2229 True 1628.0 1628 80.1500 1026 3252 1 chr1D.!!$R1 2226
8 TraesCS5A01G520700 chr7B 516799004 516800388 1384 True 920.0 920 78.8830 1871 3252 1 chr7B.!!$R1 1381
9 TraesCS5A01G520700 chr7B 656196068 656197452 1384 False 915.0 915 78.8420 1871 3252 1 chr7B.!!$F1 1381
10 TraesCS5A01G520700 chr2B 467875850 467877234 1384 True 909.0 909 78.7400 1871 3252 1 chr2B.!!$R1 1381
11 TraesCS5A01G520700 chr6B 520782141 520783503 1362 False 671.0 797 90.4955 1164 2186 2 chr6B.!!$F1 1022
12 TraesCS5A01G520700 chr2D 482055056 482055559 503 True 507.0 507 84.9210 3770 4269 1 chr2D.!!$R1 499
13 TraesCS5A01G520700 chr4A 489822928 489823435 507 True 497.0 497 84.5400 3768 4271 1 chr4A.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
246 247 0.108945 AGCCACGCGGAAAGTAGTAC 60.109 55.0 12.47 0.00 0.00 2.73 F
247 248 0.108945 GCCACGCGGAAAGTAGTACT 60.109 55.0 12.47 0.00 0.00 2.73 F
300 301 0.175302 AATCTCCTGCACTGCTCGAG 59.825 55.0 8.45 8.45 0.00 4.04 F
323 324 0.302890 CGCTGGACGTACTACTACCG 59.697 60.0 0.00 0.00 36.87 4.02 F
2382 2840 0.242825 TCACCGCCTACTTCAAGTCG 59.757 55.0 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 2269 1.987855 GGAGATCACGTCCACCCCA 60.988 63.158 0.00 0.0 33.84 4.96 R
2208 2665 2.032681 ACGTGCTCCTTGAAGCCC 59.967 61.111 0.00 0.0 41.77 5.19 R
2298 2756 2.357760 GCGTTGGCGAAGGTGGTA 60.358 61.111 3.11 0.0 41.33 3.25 R
2418 2876 2.512515 GAGATGCCCAGCACCGTC 60.513 66.667 0.00 0.0 43.04 4.79 R
3697 4650 0.035317 AGATGTGCTGCTTCGACCAA 59.965 50.000 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.406173 CGTGGCGACGCTGAGAGT 62.406 66.667 20.77 0.00 39.10 3.24
30 31 2.807045 GTGGCGACGCTGAGAGTG 60.807 66.667 20.77 0.00 38.02 3.51
31 32 3.295273 TGGCGACGCTGAGAGTGT 61.295 61.111 20.77 0.00 42.43 3.55
32 33 2.807045 GGCGACGCTGAGAGTGTG 60.807 66.667 20.77 0.00 39.36 3.82
33 34 2.049985 GCGACGCTGAGAGTGTGT 60.050 61.111 13.73 0.00 39.36 3.72
34 35 2.368105 GCGACGCTGAGAGTGTGTG 61.368 63.158 13.73 0.00 39.36 3.82
35 36 1.008424 CGACGCTGAGAGTGTGTGT 60.008 57.895 0.00 0.00 39.36 3.72
36 37 1.271446 CGACGCTGAGAGTGTGTGTG 61.271 60.000 0.00 0.00 39.36 3.82
37 38 1.552348 GACGCTGAGAGTGTGTGTGC 61.552 60.000 0.00 0.00 39.36 4.57
38 39 2.313172 CGCTGAGAGTGTGTGTGCC 61.313 63.158 0.00 0.00 0.00 5.01
39 40 1.227645 GCTGAGAGTGTGTGTGCCA 60.228 57.895 0.00 0.00 0.00 4.92
40 41 1.502163 GCTGAGAGTGTGTGTGCCAC 61.502 60.000 0.00 0.00 44.78 5.01
47 48 2.588877 GTGTGTGCCACGACTGCT 60.589 61.111 0.00 0.00 37.14 4.24
48 49 2.588596 TGTGTGCCACGACTGCTG 60.589 61.111 0.00 0.00 37.14 4.41
49 50 2.280119 GTGTGCCACGACTGCTGA 60.280 61.111 0.00 0.00 0.00 4.26
50 51 1.669115 GTGTGCCACGACTGCTGAT 60.669 57.895 0.00 0.00 0.00 2.90
51 52 1.668793 TGTGCCACGACTGCTGATG 60.669 57.895 0.00 0.00 0.00 3.07
52 53 2.743538 TGCCACGACTGCTGATGC 60.744 61.111 0.00 0.00 40.20 3.91
53 54 2.435586 GCCACGACTGCTGATGCT 60.436 61.111 0.00 0.00 40.48 3.79
54 55 1.153568 GCCACGACTGCTGATGCTA 60.154 57.895 0.00 0.00 40.48 3.49
55 56 1.150567 GCCACGACTGCTGATGCTAG 61.151 60.000 0.00 0.00 40.48 3.42
56 57 0.174389 CCACGACTGCTGATGCTAGT 59.826 55.000 0.00 0.00 40.48 2.57
57 58 1.405463 CCACGACTGCTGATGCTAGTA 59.595 52.381 0.00 0.00 40.48 1.82
58 59 2.159240 CCACGACTGCTGATGCTAGTAA 60.159 50.000 0.00 0.00 40.48 2.24
59 60 3.111838 CACGACTGCTGATGCTAGTAAG 58.888 50.000 0.00 0.00 40.48 2.34
60 61 3.017442 ACGACTGCTGATGCTAGTAAGA 58.983 45.455 0.00 0.00 40.48 2.10
61 62 3.444034 ACGACTGCTGATGCTAGTAAGAA 59.556 43.478 0.00 0.00 40.48 2.52
62 63 4.082190 ACGACTGCTGATGCTAGTAAGAAA 60.082 41.667 0.00 0.00 40.48 2.52
63 64 4.266502 CGACTGCTGATGCTAGTAAGAAAC 59.733 45.833 0.00 0.00 40.48 2.78
64 65 5.152623 ACTGCTGATGCTAGTAAGAAACA 57.847 39.130 0.00 0.00 40.48 2.83
65 66 5.174395 ACTGCTGATGCTAGTAAGAAACAG 58.826 41.667 0.00 0.00 40.48 3.16
66 67 4.507710 TGCTGATGCTAGTAAGAAACAGG 58.492 43.478 0.00 0.00 40.48 4.00
67 68 4.222810 TGCTGATGCTAGTAAGAAACAGGA 59.777 41.667 0.00 0.00 40.48 3.86
68 69 5.178797 GCTGATGCTAGTAAGAAACAGGAA 58.821 41.667 0.00 0.00 36.03 3.36
69 70 5.643777 GCTGATGCTAGTAAGAAACAGGAAA 59.356 40.000 0.00 0.00 36.03 3.13
70 71 6.317391 GCTGATGCTAGTAAGAAACAGGAAAT 59.683 38.462 0.00 0.00 36.03 2.17
71 72 7.466590 GCTGATGCTAGTAAGAAACAGGAAATC 60.467 40.741 0.00 0.00 36.03 2.17
72 73 7.624549 TGATGCTAGTAAGAAACAGGAAATCT 58.375 34.615 0.00 0.00 0.00 2.40
73 74 8.103305 TGATGCTAGTAAGAAACAGGAAATCTT 58.897 33.333 0.00 0.00 37.23 2.40
74 75 8.870075 ATGCTAGTAAGAAACAGGAAATCTTT 57.130 30.769 0.00 0.00 35.22 2.52
75 76 8.099364 TGCTAGTAAGAAACAGGAAATCTTTG 57.901 34.615 0.00 0.00 35.22 2.77
76 77 7.719633 TGCTAGTAAGAAACAGGAAATCTTTGT 59.280 33.333 0.00 0.00 35.22 2.83
77 78 8.017946 GCTAGTAAGAAACAGGAAATCTTTGTG 58.982 37.037 0.00 0.00 35.22 3.33
78 79 9.273016 CTAGTAAGAAACAGGAAATCTTTGTGA 57.727 33.333 0.00 0.00 35.22 3.58
79 80 8.697507 AGTAAGAAACAGGAAATCTTTGTGAT 57.302 30.769 0.00 0.00 35.22 3.06
80 81 8.571336 AGTAAGAAACAGGAAATCTTTGTGATG 58.429 33.333 0.00 0.00 35.22 3.07
81 82 6.966534 AGAAACAGGAAATCTTTGTGATGT 57.033 33.333 0.00 0.00 35.21 3.06
82 83 7.352079 AGAAACAGGAAATCTTTGTGATGTT 57.648 32.000 0.00 0.00 35.21 2.71
83 84 8.463930 AGAAACAGGAAATCTTTGTGATGTTA 57.536 30.769 0.00 0.00 35.21 2.41
84 85 8.571336 AGAAACAGGAAATCTTTGTGATGTTAG 58.429 33.333 0.00 0.00 35.21 2.34
85 86 6.824305 ACAGGAAATCTTTGTGATGTTAGG 57.176 37.500 0.00 0.00 35.21 2.69
86 87 5.183904 ACAGGAAATCTTTGTGATGTTAGGC 59.816 40.000 0.00 0.00 35.21 3.93
87 88 5.416952 CAGGAAATCTTTGTGATGTTAGGCT 59.583 40.000 0.00 0.00 35.21 4.58
88 89 5.649831 AGGAAATCTTTGTGATGTTAGGCTC 59.350 40.000 0.00 0.00 35.21 4.70
89 90 5.415701 GGAAATCTTTGTGATGTTAGGCTCA 59.584 40.000 0.00 0.00 35.21 4.26
90 91 6.096001 GGAAATCTTTGTGATGTTAGGCTCAT 59.904 38.462 0.00 0.00 35.21 2.90
91 92 6.690194 AATCTTTGTGATGTTAGGCTCATC 57.310 37.500 8.78 8.78 41.16 2.92
92 93 4.183865 TCTTTGTGATGTTAGGCTCATCG 58.816 43.478 10.53 0.00 42.96 3.84
93 94 1.939974 TGTGATGTTAGGCTCATCGC 58.060 50.000 18.01 18.01 46.51 4.58
94 95 1.482182 TGTGATGTTAGGCTCATCGCT 59.518 47.619 22.57 0.00 46.48 4.93
95 96 2.093500 TGTGATGTTAGGCTCATCGCTT 60.093 45.455 22.57 0.00 46.48 4.68
96 97 2.286294 GTGATGTTAGGCTCATCGCTTG 59.714 50.000 17.71 0.00 44.42 4.01
97 98 1.869767 GATGTTAGGCTCATCGCTTGG 59.130 52.381 0.00 0.00 39.13 3.61
98 99 0.744414 TGTTAGGCTCATCGCTTGGC 60.744 55.000 0.00 0.00 39.13 4.52
99 100 1.153168 TTAGGCTCATCGCTTGGCC 60.153 57.895 0.00 0.00 40.21 5.36
100 101 1.626356 TTAGGCTCATCGCTTGGCCT 61.626 55.000 3.32 17.50 46.97 5.19
101 102 2.032860 TAGGCTCATCGCTTGGCCTC 62.033 60.000 17.13 0.00 44.12 4.70
102 103 2.899339 GCTCATCGCTTGGCCTCC 60.899 66.667 3.32 0.00 35.14 4.30
103 104 2.587194 CTCATCGCTTGGCCTCCG 60.587 66.667 3.32 3.90 0.00 4.63
104 105 4.161295 TCATCGCTTGGCCTCCGG 62.161 66.667 3.32 0.00 0.00 5.14
116 117 4.552365 CTCCGGCATGCATCCCGT 62.552 66.667 26.71 0.00 42.87 5.28
117 118 4.108299 TCCGGCATGCATCCCGTT 62.108 61.111 26.71 0.00 42.87 4.44
118 119 3.585990 CCGGCATGCATCCCGTTC 61.586 66.667 26.71 0.00 42.87 3.95
119 120 3.940640 CGGCATGCATCCCGTTCG 61.941 66.667 21.30 7.19 39.67 3.95
120 121 2.513666 GGCATGCATCCCGTTCGA 60.514 61.111 21.36 0.00 0.00 3.71
121 122 2.112198 GGCATGCATCCCGTTCGAA 61.112 57.895 21.36 0.00 0.00 3.71
122 123 1.447317 GGCATGCATCCCGTTCGAAT 61.447 55.000 21.36 0.00 0.00 3.34
123 124 0.317269 GCATGCATCCCGTTCGAATG 60.317 55.000 14.21 10.53 0.00 2.67
124 125 0.308684 CATGCATCCCGTTCGAATGG 59.691 55.000 26.64 26.64 34.76 3.16
125 126 1.447317 ATGCATCCCGTTCGAATGGC 61.447 55.000 27.91 17.79 33.59 4.40
126 127 2.112198 GCATCCCGTTCGAATGGCA 61.112 57.895 27.91 16.84 33.59 4.92
127 128 1.447317 GCATCCCGTTCGAATGGCAT 61.447 55.000 27.91 18.45 33.59 4.40
128 129 1.024271 CATCCCGTTCGAATGGCATT 58.976 50.000 27.91 13.54 33.59 3.56
129 130 1.405105 CATCCCGTTCGAATGGCATTT 59.595 47.619 27.91 10.97 33.59 2.32
130 131 1.540267 TCCCGTTCGAATGGCATTTT 58.460 45.000 27.91 0.00 33.59 1.82
131 132 1.889829 TCCCGTTCGAATGGCATTTTT 59.110 42.857 27.91 0.00 33.59 1.94
161 162 3.257933 CTGGAAGCACAGCGTTCC 58.742 61.111 11.01 11.01 42.39 3.62
162 163 2.664851 TGGAAGCACAGCGTTCCG 60.665 61.111 12.30 0.00 44.63 4.30
163 164 2.665185 GGAAGCACAGCGTTCCGT 60.665 61.111 0.00 0.00 33.21 4.69
164 165 2.251642 GGAAGCACAGCGTTCCGTT 61.252 57.895 0.00 0.00 33.21 4.44
165 166 0.947180 GGAAGCACAGCGTTCCGTTA 60.947 55.000 0.00 0.00 33.21 3.18
166 167 0.863144 GAAGCACAGCGTTCCGTTAA 59.137 50.000 0.00 0.00 0.00 2.01
167 168 0.584876 AAGCACAGCGTTCCGTTAAC 59.415 50.000 0.00 0.00 34.52 2.01
168 169 1.205820 GCACAGCGTTCCGTTAACC 59.794 57.895 0.00 0.00 34.33 2.85
169 170 1.500512 GCACAGCGTTCCGTTAACCA 61.501 55.000 0.00 0.00 34.33 3.67
170 171 1.153353 CACAGCGTTCCGTTAACCAT 58.847 50.000 0.00 0.00 34.33 3.55
171 172 2.339418 CACAGCGTTCCGTTAACCATA 58.661 47.619 0.00 0.00 34.33 2.74
172 173 2.933906 CACAGCGTTCCGTTAACCATAT 59.066 45.455 0.00 0.00 34.33 1.78
173 174 4.114073 CACAGCGTTCCGTTAACCATATA 58.886 43.478 0.00 0.00 34.33 0.86
174 175 4.026310 CACAGCGTTCCGTTAACCATATAC 60.026 45.833 0.00 0.00 34.33 1.47
175 176 4.114073 CAGCGTTCCGTTAACCATATACA 58.886 43.478 0.00 0.00 34.33 2.29
176 177 4.748102 CAGCGTTCCGTTAACCATATACAT 59.252 41.667 0.00 0.00 34.33 2.29
177 178 4.986659 AGCGTTCCGTTAACCATATACATC 59.013 41.667 0.00 0.00 34.33 3.06
178 179 4.151157 GCGTTCCGTTAACCATATACATCC 59.849 45.833 0.00 0.00 34.33 3.51
179 180 4.383649 CGTTCCGTTAACCATATACATCCG 59.616 45.833 0.00 0.00 34.33 4.18
180 181 4.524316 TCCGTTAACCATATACATCCGG 57.476 45.455 0.00 0.00 0.00 5.14
181 182 2.997986 CCGTTAACCATATACATCCGGC 59.002 50.000 0.00 0.00 0.00 6.13
182 183 2.997986 CGTTAACCATATACATCCGGCC 59.002 50.000 0.00 0.00 0.00 6.13
183 184 3.555377 CGTTAACCATATACATCCGGCCA 60.555 47.826 2.24 0.00 0.00 5.36
184 185 4.391155 GTTAACCATATACATCCGGCCAA 58.609 43.478 2.24 0.00 0.00 4.52
185 186 3.586470 AACCATATACATCCGGCCAAA 57.414 42.857 2.24 0.00 0.00 3.28
186 187 2.858745 ACCATATACATCCGGCCAAAC 58.141 47.619 2.24 0.00 0.00 2.93
187 188 1.804151 CCATATACATCCGGCCAAACG 59.196 52.381 2.24 0.00 0.00 3.60
188 189 1.196808 CATATACATCCGGCCAAACGC 59.803 52.381 2.24 0.00 0.00 4.84
189 190 0.466543 TATACATCCGGCCAAACGCT 59.533 50.000 2.24 0.00 37.74 5.07
190 191 1.095228 ATACATCCGGCCAAACGCTG 61.095 55.000 2.24 0.00 44.20 5.18
191 192 2.457743 TACATCCGGCCAAACGCTGT 62.458 55.000 2.24 0.00 42.92 4.40
192 193 3.055719 ATCCGGCCAAACGCTGTG 61.056 61.111 2.24 0.00 42.92 3.66
193 194 3.545124 ATCCGGCCAAACGCTGTGA 62.545 57.895 2.24 0.00 42.92 3.58
194 195 2.819984 ATCCGGCCAAACGCTGTGAT 62.820 55.000 2.24 0.00 42.92 3.06
195 196 2.480555 CGGCCAAACGCTGTGATC 59.519 61.111 2.24 0.00 39.22 2.92
209 210 1.000052 TGTGATCGCAACCTCGTGTTA 60.000 47.619 6.47 0.00 34.69 2.41
243 244 0.389948 AGAAGCCACGCGGAAAGTAG 60.390 55.000 12.47 0.00 0.00 2.57
244 245 0.669625 GAAGCCACGCGGAAAGTAGT 60.670 55.000 12.47 0.00 0.00 2.73
245 246 0.604578 AAGCCACGCGGAAAGTAGTA 59.395 50.000 12.47 0.00 0.00 1.82
246 247 0.108945 AGCCACGCGGAAAGTAGTAC 60.109 55.000 12.47 0.00 0.00 2.73
247 248 0.108945 GCCACGCGGAAAGTAGTACT 60.109 55.000 12.47 0.00 0.00 2.73
248 249 1.905449 CCACGCGGAAAGTAGTACTC 58.095 55.000 12.47 0.00 0.00 2.59
263 264 3.367321 AGTACTCCTAGGGAAGCTTGTC 58.633 50.000 9.46 0.00 0.00 3.18
272 273 1.082690 GGAAGCTTGTCTGCAGCTAC 58.917 55.000 9.47 3.37 38.01 3.58
274 275 2.146342 GAAGCTTGTCTGCAGCTACAA 58.854 47.619 17.28 17.28 38.01 2.41
278 279 3.045688 GCTTGTCTGCAGCTACAAAAAC 58.954 45.455 18.42 9.82 35.32 2.43
280 281 3.969117 TGTCTGCAGCTACAAAAACTG 57.031 42.857 9.47 0.00 34.48 3.16
291 292 4.216257 GCTACAAAAACTGAATCTCCTGCA 59.784 41.667 0.00 0.00 0.00 4.41
292 293 4.574599 ACAAAAACTGAATCTCCTGCAC 57.425 40.909 0.00 0.00 0.00 4.57
294 295 4.037208 ACAAAAACTGAATCTCCTGCACTG 59.963 41.667 0.00 0.00 0.00 3.66
295 296 1.818642 AACTGAATCTCCTGCACTGC 58.181 50.000 0.00 0.00 0.00 4.40
300 301 0.175302 AATCTCCTGCACTGCTCGAG 59.825 55.000 8.45 8.45 0.00 4.04
301 302 2.295472 ATCTCCTGCACTGCTCGAGC 62.295 60.000 30.42 30.42 42.50 5.03
311 312 3.482783 GCTCGAGCAACGCTGGAC 61.483 66.667 31.91 0.00 38.40 4.02
323 324 0.302890 CGCTGGACGTACTACTACCG 59.697 60.000 0.00 0.00 36.87 4.02
350 351 0.464554 GGGCTCAGCGGCTCTTTTAT 60.465 55.000 0.00 0.00 38.46 1.40
351 352 1.383523 GGCTCAGCGGCTCTTTTATT 58.616 50.000 0.00 0.00 34.85 1.40
352 353 2.561569 GGCTCAGCGGCTCTTTTATTA 58.438 47.619 0.00 0.00 34.85 0.98
353 354 2.288186 GGCTCAGCGGCTCTTTTATTAC 59.712 50.000 0.00 0.00 34.85 1.89
365 366 7.015877 GGCTCTTTTATTACTGTTTCGAGTTG 58.984 38.462 0.00 0.00 0.00 3.16
374 375 3.744426 ACTGTTTCGAGTTGGATTTACCG 59.256 43.478 0.00 0.00 42.61 4.02
375 376 3.731089 TGTTTCGAGTTGGATTTACCGT 58.269 40.909 0.00 0.00 42.61 4.83
376 377 3.495377 TGTTTCGAGTTGGATTTACCGTG 59.505 43.478 0.00 0.00 42.61 4.94
377 378 1.717194 TCGAGTTGGATTTACCGTGC 58.283 50.000 0.00 0.00 42.61 5.34
378 379 1.274167 TCGAGTTGGATTTACCGTGCT 59.726 47.619 0.00 0.00 42.61 4.40
379 380 1.659098 CGAGTTGGATTTACCGTGCTC 59.341 52.381 0.00 0.00 42.61 4.26
380 381 2.674177 CGAGTTGGATTTACCGTGCTCT 60.674 50.000 0.00 0.00 42.61 4.09
416 423 2.364324 CCTACGGCAGCAGGAGTAAATA 59.636 50.000 3.86 0.00 32.43 1.40
417 424 3.181469 CCTACGGCAGCAGGAGTAAATAA 60.181 47.826 3.86 0.00 32.43 1.40
418 425 3.343941 ACGGCAGCAGGAGTAAATAAA 57.656 42.857 0.00 0.00 0.00 1.40
419 426 3.007635 ACGGCAGCAGGAGTAAATAAAC 58.992 45.455 0.00 0.00 0.00 2.01
440 447 1.509644 CCATGAATGCATCCGTCGGG 61.510 60.000 12.29 0.00 30.68 5.14
475 482 3.838795 CGTAGCGTGCGCCAAGTC 61.839 66.667 13.21 0.00 43.17 3.01
499 506 2.427506 GCACCAAAGTTACTCCTCCTG 58.572 52.381 0.00 0.00 0.00 3.86
542 568 0.319297 AGTTACGTGAAGTGTCGCCC 60.319 55.000 0.00 0.00 0.00 6.13
557 587 4.201122 CCCCAGGCAGCCTCCATC 62.201 72.222 12.53 0.00 0.00 3.51
558 588 4.559063 CCCAGGCAGCCTCCATCG 62.559 72.222 12.53 0.00 0.00 3.84
577 607 2.563976 CGTCAGACACGCAAAATGAAG 58.436 47.619 0.41 0.00 42.87 3.02
578 608 2.032894 CGTCAGACACGCAAAATGAAGT 60.033 45.455 0.41 0.00 42.87 3.01
581 611 5.614668 CGTCAGACACGCAAAATGAAGTAAT 60.615 40.000 0.41 0.00 42.87 1.89
582 612 5.565259 GTCAGACACGCAAAATGAAGTAATG 59.435 40.000 0.00 0.00 0.00 1.90
584 614 6.017523 TCAGACACGCAAAATGAAGTAATGAA 60.018 34.615 0.00 0.00 0.00 2.57
585 615 6.086765 CAGACACGCAAAATGAAGTAATGAAC 59.913 38.462 0.00 0.00 0.00 3.18
643 679 1.600916 GGCCCAAGCAAACTCTCGT 60.601 57.895 0.00 0.00 42.56 4.18
644 680 0.321298 GGCCCAAGCAAACTCTCGTA 60.321 55.000 0.00 0.00 42.56 3.43
645 681 0.796927 GCCCAAGCAAACTCTCGTAC 59.203 55.000 0.00 0.00 39.53 3.67
646 682 1.876416 GCCCAAGCAAACTCTCGTACA 60.876 52.381 0.00 0.00 39.53 2.90
647 683 1.798813 CCCAAGCAAACTCTCGTACAC 59.201 52.381 0.00 0.00 0.00 2.90
711 770 0.381801 CCGCGGGGATTCAAAATCAG 59.618 55.000 20.10 0.00 34.06 2.90
740 810 2.925563 GCAAATTCAAAATCAGGCCGAG 59.074 45.455 0.00 0.00 0.00 4.63
741 811 2.925563 CAAATTCAAAATCAGGCCGAGC 59.074 45.455 0.00 0.00 0.00 5.03
808 882 4.758251 TGCCGCCCATCACTGACG 62.758 66.667 0.00 0.00 0.00 4.35
810 884 4.758251 CCGCCCATCACTGACGCA 62.758 66.667 0.00 0.00 0.00 5.24
811 885 3.490759 CGCCCATCACTGACGCAC 61.491 66.667 0.00 0.00 0.00 5.34
812 886 3.490759 GCCCATCACTGACGCACG 61.491 66.667 0.00 0.00 0.00 5.34
813 887 2.815211 CCCATCACTGACGCACGG 60.815 66.667 0.00 0.00 0.00 4.94
814 888 3.490759 CCATCACTGACGCACGGC 61.491 66.667 0.00 0.00 0.00 5.68
815 889 3.490759 CATCACTGACGCACGGCC 61.491 66.667 0.00 0.00 0.00 6.13
816 890 4.760047 ATCACTGACGCACGGCCC 62.760 66.667 0.00 0.00 0.00 5.80
857 931 0.818040 GCCTACATAAACCCCGGCAG 60.818 60.000 0.00 0.00 37.48 4.85
941 1025 1.274728 CGCCCACCCAAATCAAAATCA 59.725 47.619 0.00 0.00 0.00 2.57
942 1026 2.698803 GCCCACCCAAATCAAAATCAC 58.301 47.619 0.00 0.00 0.00 3.06
953 1037 1.003118 TCAAAATCACCTCCACCTCCG 59.997 52.381 0.00 0.00 0.00 4.63
956 1040 1.605058 AATCACCTCCACCTCCGACG 61.605 60.000 0.00 0.00 0.00 5.12
1007 1099 3.190849 CGTGCGTGCCATGAGGAG 61.191 66.667 0.00 0.00 36.89 3.69
1095 1187 1.671850 CGGAAGAACTACGTGGTGCAT 60.672 52.381 13.13 0.00 0.00 3.96
1104 1196 2.512515 GTGGTGCATCTCGAGCCC 60.513 66.667 7.81 2.93 0.00 5.19
1152 1244 3.681835 GTCGAGGACTGGCACCGT 61.682 66.667 0.00 0.00 0.00 4.83
1689 1794 2.181021 GAGAACGCCGATGTCCGT 59.819 61.111 0.00 0.00 39.70 4.69
1992 2446 4.479993 GCGCCCTGGATGCTCACT 62.480 66.667 0.00 0.00 0.00 3.41
2085 2539 2.204291 TCCCTGTTCCAGCCCCAT 60.204 61.111 0.00 0.00 0.00 4.00
2382 2840 0.242825 TCACCGCCTACTTCAAGTCG 59.757 55.000 0.00 0.00 0.00 4.18
2390 2848 0.242825 TACTTCAAGTCGACGCCCAG 59.757 55.000 10.46 8.01 0.00 4.45
2418 2876 1.361668 CGAGCATCACGTTCAAGGGG 61.362 60.000 0.00 0.00 33.17 4.79
2572 3030 0.103026 CGAGATGCATCCGGAGTTCA 59.897 55.000 23.06 7.96 0.00 3.18
2595 3056 2.032681 GACGTGAGCCTGGCCTTT 59.967 61.111 16.57 0.00 0.00 3.11
3270 4192 2.813908 GCCAAGGTGGTCGCGTAG 60.814 66.667 5.77 0.00 40.46 3.51
3271 4193 2.125673 CCAAGGTGGTCGCGTAGG 60.126 66.667 5.77 0.00 31.35 3.18
3272 4194 2.813908 CAAGGTGGTCGCGTAGGC 60.814 66.667 5.77 0.00 0.00 3.93
3399 4322 2.202260 TGCGTACTTCGTCGAGCG 60.202 61.111 0.00 0.98 42.13 5.03
3400 4323 3.595759 GCGTACTTCGTCGAGCGC 61.596 66.667 15.54 15.54 42.13 5.92
3401 4324 2.943034 CGTACTTCGTCGAGCGCC 60.943 66.667 2.29 0.00 41.07 6.53
3543 4476 3.238232 TGCACACTGGCAAGAGATC 57.762 52.632 0.00 0.00 41.65 2.75
3544 4477 0.689055 TGCACACTGGCAAGAGATCT 59.311 50.000 0.00 0.00 41.65 2.75
3545 4478 1.901833 TGCACACTGGCAAGAGATCTA 59.098 47.619 0.00 0.00 41.65 1.98
3546 4479 2.502947 TGCACACTGGCAAGAGATCTAT 59.497 45.455 0.00 0.00 41.65 1.98
3574 4512 4.792189 CGAAAGCAGAGCATTTCAATTCTC 59.208 41.667 11.51 0.00 35.58 2.87
3583 4521 7.119407 CAGAGCATTTCAATTCTCTCTTCAGAA 59.881 37.037 0.00 0.00 36.99 3.02
3584 4522 7.119553 AGAGCATTTCAATTCTCTCTTCAGAAC 59.880 37.037 0.00 0.00 34.60 3.01
3586 4524 6.541086 CATTTCAATTCTCTCTTCAGAACGG 58.459 40.000 0.00 0.00 35.18 4.44
3587 4525 5.468540 TTCAATTCTCTCTTCAGAACGGA 57.531 39.130 0.00 0.00 35.18 4.69
3588 4526 5.468540 TCAATTCTCTCTTCAGAACGGAA 57.531 39.130 0.00 0.00 35.18 4.30
3589 4527 5.853936 TCAATTCTCTCTTCAGAACGGAAA 58.146 37.500 0.00 0.00 35.18 3.13
3590 4528 6.288294 TCAATTCTCTCTTCAGAACGGAAAA 58.712 36.000 0.00 0.00 35.18 2.29
3629 4574 6.545504 TCTTCAGACAAAAACAGAGCATAC 57.454 37.500 0.00 0.00 0.00 2.39
3631 4576 6.425114 TCTTCAGACAAAAACAGAGCATACTC 59.575 38.462 0.00 0.00 43.82 2.59
3643 4588 2.171448 GAGCATACTCTGGTTGGTCCAT 59.829 50.000 0.00 0.00 46.12 3.41
3644 4589 2.092753 AGCATACTCTGGTTGGTCCATG 60.093 50.000 0.00 0.00 46.12 3.66
3645 4590 2.923121 CATACTCTGGTTGGTCCATGG 58.077 52.381 4.97 4.97 46.12 3.66
3646 4591 1.285280 TACTCTGGTTGGTCCATGGG 58.715 55.000 13.02 0.00 46.12 4.00
3647 4592 0.475632 ACTCTGGTTGGTCCATGGGA 60.476 55.000 13.02 0.00 46.12 4.37
3673 4626 2.240414 TGGCATCATCTGACTGTTCCAT 59.760 45.455 0.00 0.00 32.21 3.41
3696 4649 0.111061 ACTTGCACATTGGCAGGAGA 59.889 50.000 13.46 0.00 45.88 3.71
3697 4650 1.272313 ACTTGCACATTGGCAGGAGAT 60.272 47.619 13.46 0.00 45.88 2.75
3698 4651 1.822990 CTTGCACATTGGCAGGAGATT 59.177 47.619 0.00 0.00 45.88 2.40
3699 4652 1.179152 TGCACATTGGCAGGAGATTG 58.821 50.000 0.00 0.00 39.25 2.67
3700 4653 0.458669 GCACATTGGCAGGAGATTGG 59.541 55.000 0.00 0.00 0.00 3.16
3701 4654 1.843368 CACATTGGCAGGAGATTGGT 58.157 50.000 0.00 0.00 0.00 3.67
3702 4655 1.747355 CACATTGGCAGGAGATTGGTC 59.253 52.381 0.00 0.00 0.00 4.02
3703 4656 1.019673 CATTGGCAGGAGATTGGTCG 58.980 55.000 0.00 0.00 0.00 4.79
3704 4657 0.911769 ATTGGCAGGAGATTGGTCGA 59.088 50.000 0.00 0.00 0.00 4.20
3705 4658 0.690192 TTGGCAGGAGATTGGTCGAA 59.310 50.000 0.00 0.00 0.00 3.71
3706 4659 0.250234 TGGCAGGAGATTGGTCGAAG 59.750 55.000 0.00 0.00 0.00 3.79
3707 4660 1.092345 GGCAGGAGATTGGTCGAAGC 61.092 60.000 0.00 0.00 0.00 3.86
3708 4661 0.391661 GCAGGAGATTGGTCGAAGCA 60.392 55.000 0.00 0.00 0.00 3.91
3709 4662 1.649664 CAGGAGATTGGTCGAAGCAG 58.350 55.000 0.00 0.00 0.00 4.24
3710 4663 0.107945 AGGAGATTGGTCGAAGCAGC 60.108 55.000 0.00 0.00 0.00 5.25
3711 4664 0.391661 GGAGATTGGTCGAAGCAGCA 60.392 55.000 0.00 0.00 0.00 4.41
3712 4665 0.723981 GAGATTGGTCGAAGCAGCAC 59.276 55.000 0.00 0.00 0.00 4.40
3713 4666 0.035317 AGATTGGTCGAAGCAGCACA 59.965 50.000 0.00 0.00 0.00 4.57
3714 4667 1.089920 GATTGGTCGAAGCAGCACAT 58.910 50.000 0.00 0.00 0.00 3.21
3715 4668 1.063174 GATTGGTCGAAGCAGCACATC 59.937 52.381 0.00 0.00 0.00 3.06
3716 4669 0.035317 TTGGTCGAAGCAGCACATCT 59.965 50.000 0.00 0.00 0.00 2.90
3717 4670 0.390340 TGGTCGAAGCAGCACATCTC 60.390 55.000 0.00 0.00 0.00 2.75
3718 4671 0.390340 GGTCGAAGCAGCACATCTCA 60.390 55.000 0.00 0.00 0.00 3.27
3719 4672 1.649664 GTCGAAGCAGCACATCTCAT 58.350 50.000 0.00 0.00 0.00 2.90
3720 4673 2.005451 GTCGAAGCAGCACATCTCATT 58.995 47.619 0.00 0.00 0.00 2.57
3721 4674 2.417933 GTCGAAGCAGCACATCTCATTT 59.582 45.455 0.00 0.00 0.00 2.32
3722 4675 2.674852 TCGAAGCAGCACATCTCATTTC 59.325 45.455 0.00 0.00 0.00 2.17
3723 4676 2.676839 CGAAGCAGCACATCTCATTTCT 59.323 45.455 0.00 0.00 0.00 2.52
3724 4677 3.126514 CGAAGCAGCACATCTCATTTCTT 59.873 43.478 0.00 0.00 0.00 2.52
3725 4678 4.379186 CGAAGCAGCACATCTCATTTCTTT 60.379 41.667 0.00 0.00 0.00 2.52
3726 4679 4.698583 AGCAGCACATCTCATTTCTTTC 57.301 40.909 0.00 0.00 0.00 2.62
3727 4680 4.333690 AGCAGCACATCTCATTTCTTTCT 58.666 39.130 0.00 0.00 0.00 2.52
3728 4681 4.765856 AGCAGCACATCTCATTTCTTTCTT 59.234 37.500 0.00 0.00 0.00 2.52
3729 4682 5.094134 GCAGCACATCTCATTTCTTTCTTC 58.906 41.667 0.00 0.00 0.00 2.87
3730 4683 5.335426 GCAGCACATCTCATTTCTTTCTTCA 60.335 40.000 0.00 0.00 0.00 3.02
3731 4684 6.315551 CAGCACATCTCATTTCTTTCTTCAG 58.684 40.000 0.00 0.00 0.00 3.02
3732 4685 6.148976 CAGCACATCTCATTTCTTTCTTCAGA 59.851 38.462 0.00 0.00 0.00 3.27
3733 4686 6.885376 AGCACATCTCATTTCTTTCTTCAGAT 59.115 34.615 0.00 0.00 0.00 2.90
3734 4687 7.066043 AGCACATCTCATTTCTTTCTTCAGATC 59.934 37.037 0.00 0.00 0.00 2.75
3735 4688 7.066043 GCACATCTCATTTCTTTCTTCAGATCT 59.934 37.037 0.00 0.00 0.00 2.75
3736 4689 8.605746 CACATCTCATTTCTTTCTTCAGATCTC 58.394 37.037 0.00 0.00 0.00 2.75
3737 4690 8.542080 ACATCTCATTTCTTTCTTCAGATCTCT 58.458 33.333 0.00 0.00 0.00 3.10
3792 4749 6.598457 CAGAATGAAAGACATCTTGGACAGAT 59.402 38.462 0.00 0.00 40.35 2.90
3845 4802 4.402474 CCCTTGGGTTGTTATTGGAGATTC 59.598 45.833 0.00 0.00 0.00 2.52
3862 4819 7.213678 TGGAGATTCCAACAAAATTTTGTACC 58.786 34.615 31.18 22.27 45.00 3.34
3929 4886 4.499019 GCAAGAGTTTCGGAATTGTTTGGA 60.499 41.667 0.00 0.00 0.00 3.53
3933 4890 5.592688 AGAGTTTCGGAATTGTTTGGAAGAA 59.407 36.000 0.00 0.00 0.00 2.52
3939 4896 4.261994 CGGAATTGTTTGGAAGAATGTGGT 60.262 41.667 0.00 0.00 0.00 4.16
3955 4912 6.553100 AGAATGTGGTTTACAAGATTTGGGAA 59.447 34.615 0.00 0.00 43.77 3.97
3968 4925 4.339247 AGATTTGGGAAATATTGGCGACTG 59.661 41.667 0.00 0.00 0.00 3.51
3969 4926 2.051334 TGGGAAATATTGGCGACTGG 57.949 50.000 0.00 0.00 0.00 4.00
3975 4932 2.779755 ATATTGGCGACTGGTTCACA 57.220 45.000 0.00 0.00 0.00 3.58
3983 4940 1.208052 CGACTGGTTCACATGGAGGAT 59.792 52.381 0.00 0.00 0.00 3.24
3991 4948 1.132721 TCACATGGAGGATAGGGGAGG 60.133 57.143 0.00 0.00 0.00 4.30
4000 4957 2.182536 AGGATAGGGGAGGTTAGGGAAG 59.817 54.545 0.00 0.00 0.00 3.46
4053 5010 6.179906 TGGTCAAATAAATTCCCAAAAGCA 57.820 33.333 0.00 0.00 0.00 3.91
4204 5162 8.210946 TCAAAGAAGAGACTGTTGGAGAAATTA 58.789 33.333 0.00 0.00 0.00 1.40
4208 5166 8.816894 AGAAGAGACTGTTGGAGAAATTATACA 58.183 33.333 0.00 0.00 0.00 2.29
4234 5192 6.589907 CACAACATGGGAAAAGGCTAAATTAC 59.410 38.462 0.00 0.00 0.00 1.89
4254 5212 2.047179 GGTGTTGGCCCGTCTCTC 60.047 66.667 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 2.807045 CACTCTCAGCGTCGCCAC 60.807 66.667 14.86 0.00 0.00 5.01
14 15 3.295273 ACACTCTCAGCGTCGCCA 61.295 61.111 14.86 0.00 0.00 5.69
15 16 2.807045 CACACTCTCAGCGTCGCC 60.807 66.667 14.86 0.00 0.00 5.54
16 17 2.049985 ACACACTCTCAGCGTCGC 60.050 61.111 9.80 9.80 0.00 5.19
17 18 1.008424 ACACACACTCTCAGCGTCG 60.008 57.895 0.00 0.00 0.00 5.12
18 19 1.552348 GCACACACACTCTCAGCGTC 61.552 60.000 0.00 0.00 0.00 5.19
19 20 1.592669 GCACACACACTCTCAGCGT 60.593 57.895 0.00 0.00 0.00 5.07
20 21 2.313172 GGCACACACACTCTCAGCG 61.313 63.158 0.00 0.00 0.00 5.18
21 22 1.227645 TGGCACACACACTCTCAGC 60.228 57.895 0.00 0.00 0.00 4.26
33 34 1.668793 CATCAGCAGTCGTGGCACA 60.669 57.895 19.09 1.83 0.00 4.57
34 35 3.031964 GCATCAGCAGTCGTGGCAC 62.032 63.158 7.79 7.79 41.58 5.01
35 36 1.887344 TAGCATCAGCAGTCGTGGCA 61.887 55.000 0.00 0.00 45.49 4.92
36 37 1.150567 CTAGCATCAGCAGTCGTGGC 61.151 60.000 0.00 0.00 45.49 5.01
37 38 0.174389 ACTAGCATCAGCAGTCGTGG 59.826 55.000 0.00 0.00 45.49 4.94
38 39 2.851805 TACTAGCATCAGCAGTCGTG 57.148 50.000 0.00 0.00 45.49 4.35
39 40 3.017442 TCTTACTAGCATCAGCAGTCGT 58.983 45.455 0.00 0.00 45.49 4.34
40 41 3.699779 TCTTACTAGCATCAGCAGTCG 57.300 47.619 0.00 0.00 45.49 4.18
41 42 5.171476 TGTTTCTTACTAGCATCAGCAGTC 58.829 41.667 0.00 0.00 45.49 3.51
42 43 5.152623 TGTTTCTTACTAGCATCAGCAGT 57.847 39.130 0.00 0.00 45.49 4.40
43 44 4.569966 CCTGTTTCTTACTAGCATCAGCAG 59.430 45.833 0.00 0.00 45.49 4.24
44 45 4.222810 TCCTGTTTCTTACTAGCATCAGCA 59.777 41.667 0.00 0.00 45.49 4.41
45 46 4.759782 TCCTGTTTCTTACTAGCATCAGC 58.240 43.478 0.00 0.00 42.56 4.26
46 47 7.768120 AGATTTCCTGTTTCTTACTAGCATCAG 59.232 37.037 0.00 0.00 0.00 2.90
47 48 7.624549 AGATTTCCTGTTTCTTACTAGCATCA 58.375 34.615 0.00 0.00 0.00 3.07
48 49 8.499403 AAGATTTCCTGTTTCTTACTAGCATC 57.501 34.615 0.00 0.00 0.00 3.91
49 50 8.734386 CAAAGATTTCCTGTTTCTTACTAGCAT 58.266 33.333 0.00 0.00 0.00 3.79
50 51 7.719633 ACAAAGATTTCCTGTTTCTTACTAGCA 59.280 33.333 0.00 0.00 0.00 3.49
51 52 8.017946 CACAAAGATTTCCTGTTTCTTACTAGC 58.982 37.037 0.00 0.00 0.00 3.42
52 53 9.273016 TCACAAAGATTTCCTGTTTCTTACTAG 57.727 33.333 0.00 0.00 0.00 2.57
53 54 9.793259 ATCACAAAGATTTCCTGTTTCTTACTA 57.207 29.630 0.00 0.00 31.20 1.82
54 55 8.571336 CATCACAAAGATTTCCTGTTTCTTACT 58.429 33.333 0.00 0.00 33.72 2.24
55 56 8.352942 ACATCACAAAGATTTCCTGTTTCTTAC 58.647 33.333 0.00 0.00 33.72 2.34
56 57 8.463930 ACATCACAAAGATTTCCTGTTTCTTA 57.536 30.769 0.00 0.00 33.72 2.10
57 58 7.352079 ACATCACAAAGATTTCCTGTTTCTT 57.648 32.000 0.00 0.00 33.72 2.52
58 59 6.966534 ACATCACAAAGATTTCCTGTTTCT 57.033 33.333 0.00 0.00 33.72 2.52
59 60 7.809806 CCTAACATCACAAAGATTTCCTGTTTC 59.190 37.037 0.00 0.00 33.72 2.78
60 61 7.661040 CCTAACATCACAAAGATTTCCTGTTT 58.339 34.615 0.00 0.00 33.72 2.83
61 62 6.294731 GCCTAACATCACAAAGATTTCCTGTT 60.295 38.462 0.00 0.00 33.72 3.16
62 63 5.183904 GCCTAACATCACAAAGATTTCCTGT 59.816 40.000 0.00 0.00 33.72 4.00
63 64 5.416952 AGCCTAACATCACAAAGATTTCCTG 59.583 40.000 0.00 0.00 33.72 3.86
64 65 5.574188 AGCCTAACATCACAAAGATTTCCT 58.426 37.500 0.00 0.00 33.72 3.36
65 66 5.415701 TGAGCCTAACATCACAAAGATTTCC 59.584 40.000 0.00 0.00 33.72 3.13
66 67 6.500684 TGAGCCTAACATCACAAAGATTTC 57.499 37.500 0.00 0.00 33.72 2.17
67 68 6.183360 CGATGAGCCTAACATCACAAAGATTT 60.183 38.462 0.00 0.00 42.68 2.17
68 69 5.295292 CGATGAGCCTAACATCACAAAGATT 59.705 40.000 0.00 0.00 42.68 2.40
69 70 4.813161 CGATGAGCCTAACATCACAAAGAT 59.187 41.667 0.00 0.00 42.68 2.40
70 71 4.183865 CGATGAGCCTAACATCACAAAGA 58.816 43.478 0.00 0.00 42.68 2.52
71 72 3.242543 GCGATGAGCCTAACATCACAAAG 60.243 47.826 0.00 0.00 42.68 2.77
72 73 2.677836 GCGATGAGCCTAACATCACAAA 59.322 45.455 0.00 0.00 42.68 2.83
73 74 2.279741 GCGATGAGCCTAACATCACAA 58.720 47.619 0.00 0.00 42.68 3.33
74 75 1.939974 GCGATGAGCCTAACATCACA 58.060 50.000 0.00 0.00 42.68 3.58
86 87 2.587194 CGGAGGCCAAGCGATGAG 60.587 66.667 5.01 0.00 0.00 2.90
87 88 4.161295 CCGGAGGCCAAGCGATGA 62.161 66.667 5.01 0.00 46.14 2.92
103 104 1.447317 ATTCGAACGGGATGCATGCC 61.447 55.000 26.30 26.30 34.56 4.40
104 105 0.317269 CATTCGAACGGGATGCATGC 60.317 55.000 11.82 11.82 0.00 4.06
105 106 0.308684 CCATTCGAACGGGATGCATG 59.691 55.000 2.46 0.00 0.00 4.06
106 107 1.447317 GCCATTCGAACGGGATGCAT 61.447 55.000 19.09 0.00 0.00 3.96
107 108 2.112198 GCCATTCGAACGGGATGCA 61.112 57.895 19.09 0.00 0.00 3.96
108 109 1.447317 ATGCCATTCGAACGGGATGC 61.447 55.000 16.80 6.03 31.26 3.91
109 110 1.024271 AATGCCATTCGAACGGGATG 58.976 50.000 18.19 3.30 33.04 3.51
110 111 1.762708 AAATGCCATTCGAACGGGAT 58.237 45.000 11.77 11.77 34.34 3.85
111 112 1.540267 AAAATGCCATTCGAACGGGA 58.460 45.000 19.09 14.23 0.00 5.14
112 113 2.362169 AAAAATGCCATTCGAACGGG 57.638 45.000 12.89 12.53 0.00 5.28
130 131 3.450457 TGCTTCCAGCTCAAAAGGAAAAA 59.550 39.130 4.23 0.00 42.97 1.94
131 132 3.030291 TGCTTCCAGCTCAAAAGGAAAA 58.970 40.909 4.23 0.00 42.97 2.29
132 133 2.362077 GTGCTTCCAGCTCAAAAGGAAA 59.638 45.455 4.23 0.00 42.97 3.13
133 134 1.956477 GTGCTTCCAGCTCAAAAGGAA 59.044 47.619 2.75 2.75 42.97 3.36
134 135 1.133823 TGTGCTTCCAGCTCAAAAGGA 60.134 47.619 0.00 0.00 41.15 3.36
135 136 1.268899 CTGTGCTTCCAGCTCAAAAGG 59.731 52.381 2.44 0.00 43.10 3.11
136 137 2.701073 CTGTGCTTCCAGCTCAAAAG 57.299 50.000 2.44 0.00 43.10 2.27
144 145 3.257933 GGAACGCTGTGCTTCCAG 58.742 61.111 13.86 0.00 36.55 3.86
157 158 4.687483 CCGGATGTATATGGTTAACGGAAC 59.313 45.833 0.00 0.00 41.13 3.62
158 159 4.800249 GCCGGATGTATATGGTTAACGGAA 60.800 45.833 5.05 0.00 41.13 4.30
159 160 3.306225 GCCGGATGTATATGGTTAACGGA 60.306 47.826 5.05 0.00 41.13 4.69
160 161 2.997986 GCCGGATGTATATGGTTAACGG 59.002 50.000 5.05 0.00 41.52 4.44
161 162 2.997986 GGCCGGATGTATATGGTTAACG 59.002 50.000 5.05 0.00 0.00 3.18
162 163 4.010667 TGGCCGGATGTATATGGTTAAC 57.989 45.455 5.05 0.00 0.00 2.01
163 164 4.708576 TTGGCCGGATGTATATGGTTAA 57.291 40.909 5.05 0.00 0.00 2.01
164 165 4.391155 GTTTGGCCGGATGTATATGGTTA 58.609 43.478 5.05 0.00 0.00 2.85
165 166 3.219281 GTTTGGCCGGATGTATATGGTT 58.781 45.455 5.05 0.00 0.00 3.67
166 167 2.808933 CGTTTGGCCGGATGTATATGGT 60.809 50.000 5.05 0.00 0.00 3.55
167 168 1.804151 CGTTTGGCCGGATGTATATGG 59.196 52.381 5.05 0.00 0.00 2.74
168 169 1.196808 GCGTTTGGCCGGATGTATATG 59.803 52.381 5.05 0.00 34.80 1.78
169 170 1.071699 AGCGTTTGGCCGGATGTATAT 59.928 47.619 5.05 0.00 45.17 0.86
170 171 0.466543 AGCGTTTGGCCGGATGTATA 59.533 50.000 5.05 0.00 45.17 1.47
171 172 1.095228 CAGCGTTTGGCCGGATGTAT 61.095 55.000 5.05 0.00 45.17 2.29
172 173 1.743623 CAGCGTTTGGCCGGATGTA 60.744 57.895 5.05 0.00 45.17 2.29
173 174 3.055719 CAGCGTTTGGCCGGATGT 61.056 61.111 5.05 0.00 45.17 3.06
174 175 3.055719 ACAGCGTTTGGCCGGATG 61.056 61.111 5.05 0.00 45.17 3.51
175 176 2.819984 ATCACAGCGTTTGGCCGGAT 62.820 55.000 5.05 0.00 45.17 4.18
176 177 3.545124 ATCACAGCGTTTGGCCGGA 62.545 57.895 5.05 0.00 45.17 5.14
177 178 3.039202 GATCACAGCGTTTGGCCGG 62.039 63.158 0.00 0.00 45.17 6.13
178 179 2.480555 GATCACAGCGTTTGGCCG 59.519 61.111 0.00 0.00 45.17 6.13
179 180 2.480555 CGATCACAGCGTTTGGCC 59.519 61.111 0.00 0.00 45.17 5.36
180 181 2.202349 GCGATCACAGCGTTTGGC 60.202 61.111 0.00 0.00 44.05 4.52
181 182 0.725784 GTTGCGATCACAGCGTTTGG 60.726 55.000 0.00 0.00 37.44 3.28
182 183 0.725784 GGTTGCGATCACAGCGTTTG 60.726 55.000 0.00 0.00 37.44 2.93
183 184 0.884704 AGGTTGCGATCACAGCGTTT 60.885 50.000 0.00 0.00 37.44 3.60
184 185 1.291877 GAGGTTGCGATCACAGCGTT 61.292 55.000 0.00 0.00 37.44 4.84
185 186 1.738099 GAGGTTGCGATCACAGCGT 60.738 57.895 0.00 0.00 37.44 5.07
186 187 2.792290 CGAGGTTGCGATCACAGCG 61.792 63.158 0.00 0.00 37.44 5.18
187 188 1.738099 ACGAGGTTGCGATCACAGC 60.738 57.895 0.00 0.00 34.83 4.40
188 189 0.667487 ACACGAGGTTGCGATCACAG 60.667 55.000 0.00 0.00 34.83 3.66
189 190 0.249699 AACACGAGGTTGCGATCACA 60.250 50.000 0.00 0.00 38.60 3.58
190 191 1.389106 GTAACACGAGGTTGCGATCAC 59.611 52.381 7.34 0.00 40.73 3.06
191 192 1.000052 TGTAACACGAGGTTGCGATCA 60.000 47.619 7.34 0.00 44.09 2.92
192 193 1.705256 TGTAACACGAGGTTGCGATC 58.295 50.000 7.34 0.00 44.09 3.69
193 194 2.157834 TTGTAACACGAGGTTGCGAT 57.842 45.000 7.34 0.00 44.09 4.58
194 195 1.937278 TTTGTAACACGAGGTTGCGA 58.063 45.000 7.34 3.74 44.09 5.10
195 196 2.961522 ATTTGTAACACGAGGTTGCG 57.038 45.000 7.34 0.00 44.09 4.85
236 237 5.202765 AGCTTCCCTAGGAGTACTACTTTC 58.797 45.833 14.24 0.00 31.21 2.62
243 244 3.131400 CAGACAAGCTTCCCTAGGAGTAC 59.869 52.174 11.48 0.00 31.21 2.73
244 245 3.366396 CAGACAAGCTTCCCTAGGAGTA 58.634 50.000 11.48 0.00 31.21 2.59
245 246 2.183679 CAGACAAGCTTCCCTAGGAGT 58.816 52.381 11.48 0.00 31.21 3.85
246 247 1.134551 GCAGACAAGCTTCCCTAGGAG 60.135 57.143 11.48 0.95 31.21 3.69
247 248 0.905357 GCAGACAAGCTTCCCTAGGA 59.095 55.000 11.48 0.00 0.00 2.94
248 249 0.615331 TGCAGACAAGCTTCCCTAGG 59.385 55.000 0.06 0.06 34.99 3.02
263 264 5.368256 AGATTCAGTTTTTGTAGCTGCAG 57.632 39.130 10.11 10.11 0.00 4.41
272 273 4.543692 CAGTGCAGGAGATTCAGTTTTTG 58.456 43.478 0.00 0.00 0.00 2.44
274 275 2.555757 GCAGTGCAGGAGATTCAGTTTT 59.444 45.455 11.09 0.00 0.00 2.43
278 279 1.654317 GAGCAGTGCAGGAGATTCAG 58.346 55.000 19.20 0.00 0.00 3.02
280 281 0.174389 TCGAGCAGTGCAGGAGATTC 59.826 55.000 19.20 2.88 0.00 2.52
294 295 3.482783 GTCCAGCGTTGCTCGAGC 61.483 66.667 30.42 30.42 42.86 5.03
295 296 3.175240 CGTCCAGCGTTGCTCGAG 61.175 66.667 8.45 8.45 42.86 4.04
305 306 0.659957 CCGGTAGTAGTACGTCCAGC 59.340 60.000 14.08 3.26 0.00 4.85
311 312 0.811616 ACGAGCCCGGTAGTAGTACG 60.812 60.000 0.00 0.00 40.78 3.67
315 316 2.487532 CCCACGAGCCCGGTAGTAG 61.488 68.421 0.00 0.00 40.78 2.57
343 344 8.842358 ATCCAACTCGAAACAGTAATAAAAGA 57.158 30.769 0.00 0.00 0.00 2.52
350 351 5.406175 CGGTAAATCCAACTCGAAACAGTAA 59.594 40.000 0.00 0.00 35.57 2.24
351 352 4.925054 CGGTAAATCCAACTCGAAACAGTA 59.075 41.667 0.00 0.00 35.57 2.74
352 353 3.744426 CGGTAAATCCAACTCGAAACAGT 59.256 43.478 0.00 0.00 35.57 3.55
353 354 3.744426 ACGGTAAATCCAACTCGAAACAG 59.256 43.478 0.00 0.00 35.57 3.16
365 366 3.372660 CTAGGAGAGCACGGTAAATCC 57.627 52.381 0.00 0.00 0.00 3.01
402 409 5.647658 TCATGGTGTTTATTTACTCCTGCTG 59.352 40.000 0.00 0.00 33.79 4.41
416 423 2.164219 GACGGATGCATTCATGGTGTTT 59.836 45.455 5.66 0.00 31.96 2.83
417 424 1.745087 GACGGATGCATTCATGGTGTT 59.255 47.619 5.66 0.00 31.96 3.32
418 425 1.382522 GACGGATGCATTCATGGTGT 58.617 50.000 5.66 0.00 31.96 4.16
419 426 0.305617 CGACGGATGCATTCATGGTG 59.694 55.000 5.66 0.00 31.96 4.17
440 447 3.764049 GAACCGACTGACGTGCGC 61.764 66.667 0.00 0.00 40.78 6.09
475 482 1.073923 AGGAGTAACTTTGGTGCCCAG 59.926 52.381 0.00 0.00 33.81 4.45
482 489 1.726853 CGCAGGAGGAGTAACTTTGG 58.273 55.000 0.00 0.00 0.00 3.28
499 506 3.497031 GTTAAGGCACCGGAGCGC 61.497 66.667 17.93 11.93 34.64 5.92
542 568 3.746949 GACGATGGAGGCTGCCTGG 62.747 68.421 28.82 11.91 31.76 4.45
558 588 3.609103 ACTTCATTTTGCGTGTCTGAC 57.391 42.857 0.00 0.00 0.00 3.51
577 607 2.816520 ACGCGCGGGGTTCATTAC 60.817 61.111 35.22 0.00 0.00 1.89
578 608 2.816083 CACGCGCGGGGTTCATTA 60.816 61.111 35.22 0.00 0.00 1.90
603 639 1.616159 CGGTGAGGTCATGGGTTTTT 58.384 50.000 0.00 0.00 0.00 1.94
720 790 2.925563 GCTCGGCCTGATTTTGAATTTG 59.074 45.455 0.00 0.00 0.00 2.32
740 810 4.459089 GCACAGTCGGAGGGAGGC 62.459 72.222 0.00 0.00 0.00 4.70
741 811 3.775654 GGCACAGTCGGAGGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
742 812 3.775654 GGGCACAGTCGGAGGGAG 61.776 72.222 0.00 0.00 0.00 4.30
743 813 4.316823 AGGGCACAGTCGGAGGGA 62.317 66.667 0.00 0.00 0.00 4.20
744 814 3.775654 GAGGGCACAGTCGGAGGG 61.776 72.222 0.00 0.00 0.00 4.30
745 815 3.775654 GGAGGGCACAGTCGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
750 820 2.267324 GAGCTGGAGGGCACAGTC 59.733 66.667 0.00 0.00 38.22 3.51
751 821 2.527624 TGAGCTGGAGGGCACAGT 60.528 61.111 0.00 0.00 38.22 3.55
752 822 2.046507 GTGAGCTGGAGGGCACAG 60.047 66.667 0.00 0.00 38.95 3.66
813 887 4.912395 TTGGCAGTGGGTGTGGGC 62.912 66.667 0.00 0.00 0.00 5.36
814 888 2.598394 CTTGGCAGTGGGTGTGGG 60.598 66.667 0.00 0.00 0.00 4.61
815 889 2.195567 CACTTGGCAGTGGGTGTGG 61.196 63.158 8.60 0.00 46.10 4.17
816 890 3.435590 CACTTGGCAGTGGGTGTG 58.564 61.111 8.60 0.00 46.10 3.82
836 910 1.890510 CCGGGGTTTATGTAGGCGC 60.891 63.158 0.00 0.00 0.00 6.53
837 911 1.890510 GCCGGGGTTTATGTAGGCG 60.891 63.158 2.18 0.00 34.94 5.52
838 912 0.818040 CTGCCGGGGTTTATGTAGGC 60.818 60.000 2.18 0.00 44.38 3.93
888 962 0.610687 GGAGAGTGAAGTGGAGTGGG 59.389 60.000 0.00 0.00 0.00 4.61
941 1025 2.910737 TACCGTCGGAGGTGGAGGT 61.911 63.158 20.51 0.00 45.54 3.85
942 1026 2.044650 TACCGTCGGAGGTGGAGG 60.045 66.667 20.51 0.00 45.54 4.30
1095 1187 4.043100 TCGTCCCTGGGCTCGAGA 62.043 66.667 18.75 9.22 0.00 4.04
1104 1196 3.141488 CTCCCCTCGTCGTCCCTG 61.141 72.222 0.00 0.00 0.00 4.45
1359 1463 2.035442 GGTCTGCAGGCCGAGAAAC 61.035 63.158 24.02 5.41 0.00 2.78
1653 1757 2.359478 ACGAAATTTCCCGCGGCT 60.359 55.556 22.85 0.00 0.00 5.52
1815 2269 1.987855 GGAGATCACGTCCACCCCA 60.988 63.158 0.00 0.00 33.84 4.96
1980 2434 2.163390 CGCGACAGTGAGCATCCAG 61.163 63.158 0.00 0.00 0.00 3.86
2208 2665 2.032681 ACGTGCTCCTTGAAGCCC 59.967 61.111 0.00 0.00 41.77 5.19
2298 2756 2.357760 GCGTTGGCGAAGGTGGTA 60.358 61.111 3.11 0.00 41.33 3.25
2418 2876 2.512515 GAGATGCCCAGCACCGTC 60.513 66.667 0.00 0.00 43.04 4.79
2562 3020 1.798735 GTCGTCGATGAACTCCGGA 59.201 57.895 9.35 2.93 0.00 5.14
2572 3030 2.485582 CAGGCTCACGTCGTCGAT 59.514 61.111 9.47 0.00 40.62 3.59
2595 3056 1.375396 CGTGCCGGACTCCATGAAA 60.375 57.895 5.05 0.00 0.00 2.69
2745 3206 1.516603 GCGGTACTGCTCGTCCTTC 60.517 63.158 19.72 0.00 0.00 3.46
3267 4189 1.140375 CTACCGACCCAACGCCTAC 59.860 63.158 0.00 0.00 0.00 3.18
3270 4192 4.462280 CCCTACCGACCCAACGCC 62.462 72.222 0.00 0.00 0.00 5.68
3271 4193 3.366739 CTCCCTACCGACCCAACGC 62.367 68.421 0.00 0.00 0.00 4.84
3272 4194 2.718073 CCTCCCTACCGACCCAACG 61.718 68.421 0.00 0.00 0.00 4.10
3273 4195 2.364780 CCCTCCCTACCGACCCAAC 61.365 68.421 0.00 0.00 0.00 3.77
3274 4196 2.039951 CCCTCCCTACCGACCCAA 59.960 66.667 0.00 0.00 0.00 4.12
3275 4197 4.084147 CCCCTCCCTACCGACCCA 62.084 72.222 0.00 0.00 0.00 4.51
3276 4198 3.630740 AACCCCTCCCTACCGACCC 62.631 68.421 0.00 0.00 0.00 4.46
3277 4199 2.040114 AACCCCTCCCTACCGACC 59.960 66.667 0.00 0.00 0.00 4.79
3278 4200 2.421399 CGAACCCCTCCCTACCGAC 61.421 68.421 0.00 0.00 0.00 4.79
3482 4408 7.633193 ATTGCTACATTTCACGGGTTAATAA 57.367 32.000 0.00 0.00 0.00 1.40
3542 4475 9.752362 TGAAATGCTCTGCTTTCGATCGATAGA 62.752 40.741 31.43 23.04 40.82 1.98
3543 4476 3.005341 TGCTCTGCTTTCGATCGATAG 57.995 47.619 25.50 25.50 0.00 2.08
3544 4477 3.650070 ATGCTCTGCTTTCGATCGATA 57.350 42.857 20.18 13.58 0.00 2.92
3545 4478 2.522836 ATGCTCTGCTTTCGATCGAT 57.477 45.000 20.18 0.00 0.00 3.59
3546 4479 2.299993 AATGCTCTGCTTTCGATCGA 57.700 45.000 15.15 15.15 0.00 3.59
3574 4512 4.319118 GCTCTGTTTTTCCGTTCTGAAGAG 60.319 45.833 0.00 0.00 0.00 2.85
3639 4584 1.925285 GATGCCACTGGTCCCATGGA 61.925 60.000 15.22 0.00 35.33 3.41
3640 4585 1.454479 GATGCCACTGGTCCCATGG 60.454 63.158 4.14 4.14 36.51 3.66
3643 4588 0.915872 AGATGATGCCACTGGTCCCA 60.916 55.000 0.00 0.00 0.00 4.37
3644 4589 0.465097 CAGATGATGCCACTGGTCCC 60.465 60.000 0.00 0.00 0.00 4.46
3645 4590 0.543277 TCAGATGATGCCACTGGTCC 59.457 55.000 0.00 0.00 33.19 4.46
3646 4591 1.209019 AGTCAGATGATGCCACTGGTC 59.791 52.381 0.00 0.00 33.19 4.02
3647 4592 1.065636 CAGTCAGATGATGCCACTGGT 60.066 52.381 0.00 0.00 32.61 4.00
3687 4640 0.250234 CTTCGACCAATCTCCTGCCA 59.750 55.000 0.00 0.00 0.00 4.92
3696 4649 1.089920 GATGTGCTGCTTCGACCAAT 58.910 50.000 0.00 0.00 0.00 3.16
3697 4650 0.035317 AGATGTGCTGCTTCGACCAA 59.965 50.000 0.00 0.00 0.00 3.67
3698 4651 0.390340 GAGATGTGCTGCTTCGACCA 60.390 55.000 0.00 0.00 0.00 4.02
3699 4652 0.390340 TGAGATGTGCTGCTTCGACC 60.390 55.000 0.00 0.00 0.00 4.79
3700 4653 1.649664 ATGAGATGTGCTGCTTCGAC 58.350 50.000 0.00 0.00 0.00 4.20
3701 4654 2.391616 AATGAGATGTGCTGCTTCGA 57.608 45.000 0.00 0.00 0.00 3.71
3702 4655 2.676839 AGAAATGAGATGTGCTGCTTCG 59.323 45.455 0.00 0.00 0.00 3.79
3703 4656 4.698583 AAGAAATGAGATGTGCTGCTTC 57.301 40.909 0.00 0.00 0.00 3.86
3704 4657 4.765856 AGAAAGAAATGAGATGTGCTGCTT 59.234 37.500 0.00 0.00 0.00 3.91
3705 4658 4.333690 AGAAAGAAATGAGATGTGCTGCT 58.666 39.130 0.00 0.00 0.00 4.24
3706 4659 4.698583 AGAAAGAAATGAGATGTGCTGC 57.301 40.909 0.00 0.00 0.00 5.25
3707 4660 6.148976 TCTGAAGAAAGAAATGAGATGTGCTG 59.851 38.462 0.00 0.00 0.00 4.41
3708 4661 6.236409 TCTGAAGAAAGAAATGAGATGTGCT 58.764 36.000 0.00 0.00 0.00 4.40
3709 4662 6.492007 TCTGAAGAAAGAAATGAGATGTGC 57.508 37.500 0.00 0.00 0.00 4.57
3710 4663 8.495361 AGATCTGAAGAAAGAAATGAGATGTG 57.505 34.615 0.00 0.00 0.00 3.21
3711 4664 8.542080 AGAGATCTGAAGAAAGAAATGAGATGT 58.458 33.333 0.00 0.00 0.00 3.06
3712 4665 8.951787 AGAGATCTGAAGAAAGAAATGAGATG 57.048 34.615 0.00 0.00 0.00 2.90
3742 4695 9.300681 TGTCTGTTCATTCCTGAAAAAGAATAT 57.699 29.630 4.48 0.00 42.85 1.28
3743 4696 8.690203 TGTCTGTTCATTCCTGAAAAAGAATA 57.310 30.769 4.48 0.00 42.85 1.75
3744 4697 7.503566 TCTGTCTGTTCATTCCTGAAAAAGAAT 59.496 33.333 4.48 0.00 42.85 2.40
3745 4698 6.828273 TCTGTCTGTTCATTCCTGAAAAAGAA 59.172 34.615 4.48 0.00 42.85 2.52
3746 4699 6.356556 TCTGTCTGTTCATTCCTGAAAAAGA 58.643 36.000 0.00 0.00 42.85 2.52
3747 4700 6.624352 TCTGTCTGTTCATTCCTGAAAAAG 57.376 37.500 0.00 0.00 42.85 2.27
3748 4701 7.285172 TCATTCTGTCTGTTCATTCCTGAAAAA 59.715 33.333 0.00 0.00 42.85 1.94
3749 4702 6.772233 TCATTCTGTCTGTTCATTCCTGAAAA 59.228 34.615 0.00 0.00 42.85 2.29
3750 4703 6.298361 TCATTCTGTCTGTTCATTCCTGAAA 58.702 36.000 0.00 0.00 42.85 2.69
3751 4704 5.868454 TCATTCTGTCTGTTCATTCCTGAA 58.132 37.500 0.00 0.00 39.07 3.02
3752 4705 5.488262 TCATTCTGTCTGTTCATTCCTGA 57.512 39.130 0.00 0.00 0.00 3.86
3753 4706 6.429078 TCTTTCATTCTGTCTGTTCATTCCTG 59.571 38.462 0.00 0.00 0.00 3.86
3754 4707 6.429385 GTCTTTCATTCTGTCTGTTCATTCCT 59.571 38.462 0.00 0.00 0.00 3.36
3755 4708 6.205464 TGTCTTTCATTCTGTCTGTTCATTCC 59.795 38.462 0.00 0.00 0.00 3.01
3756 4709 7.194607 TGTCTTTCATTCTGTCTGTTCATTC 57.805 36.000 0.00 0.00 0.00 2.67
3757 4710 7.664731 AGATGTCTTTCATTCTGTCTGTTCATT 59.335 33.333 0.00 0.00 36.83 2.57
3758 4711 7.166851 AGATGTCTTTCATTCTGTCTGTTCAT 58.833 34.615 0.00 0.00 36.83 2.57
3759 4712 6.528321 AGATGTCTTTCATTCTGTCTGTTCA 58.472 36.000 0.00 0.00 36.83 3.18
3760 4713 7.296660 CAAGATGTCTTTCATTCTGTCTGTTC 58.703 38.462 0.00 0.00 36.83 3.18
3761 4714 6.206243 CCAAGATGTCTTTCATTCTGTCTGTT 59.794 38.462 0.00 0.00 36.83 3.16
3762 4715 5.704515 CCAAGATGTCTTTCATTCTGTCTGT 59.295 40.000 0.00 0.00 36.83 3.41
3763 4716 5.936372 TCCAAGATGTCTTTCATTCTGTCTG 59.064 40.000 0.00 0.00 36.83 3.51
3764 4717 5.936956 GTCCAAGATGTCTTTCATTCTGTCT 59.063 40.000 0.00 0.00 36.83 3.41
3765 4718 5.702670 TGTCCAAGATGTCTTTCATTCTGTC 59.297 40.000 0.00 0.00 36.83 3.51
3766 4719 5.624159 TGTCCAAGATGTCTTTCATTCTGT 58.376 37.500 0.00 0.00 36.83 3.41
3792 4749 3.673338 CACGAGAATGTAAAGTGCGAAGA 59.327 43.478 0.00 0.00 0.00 2.87
3849 4806 7.930865 TCCTTTTCATGAGGGTACAAAATTTTG 59.069 33.333 25.73 25.73 38.20 2.44
3850 4807 8.028652 TCCTTTTCATGAGGGTACAAAATTTT 57.971 30.769 0.00 0.00 34.93 1.82
3856 4813 4.290985 TCCATCCTTTTCATGAGGGTACAA 59.709 41.667 0.00 0.00 34.18 2.41
3862 4819 3.659183 ACCTCCATCCTTTTCATGAGG 57.341 47.619 0.00 0.00 35.53 3.86
3916 4873 4.236935 CCACATTCTTCCAAACAATTCCG 58.763 43.478 0.00 0.00 0.00 4.30
3929 4886 6.553100 TCCCAAATCTTGTAAACCACATTCTT 59.447 34.615 0.00 0.00 36.90 2.52
3933 4890 6.739331 TTTCCCAAATCTTGTAAACCACAT 57.261 33.333 0.00 0.00 36.90 3.21
3939 4896 7.038659 CGCCAATATTTCCCAAATCTTGTAAA 58.961 34.615 6.43 0.00 34.80 2.01
3955 4912 3.066291 TGTGAACCAGTCGCCAATATT 57.934 42.857 0.00 0.00 35.76 1.28
3968 4925 1.421646 CCCCTATCCTCCATGTGAACC 59.578 57.143 0.00 0.00 0.00 3.62
3969 4926 2.370189 CTCCCCTATCCTCCATGTGAAC 59.630 54.545 0.00 0.00 0.00 3.18
3975 4932 2.114506 CCTAACCTCCCCTATCCTCCAT 59.885 54.545 0.00 0.00 0.00 3.41
3983 4940 1.293153 GTCCTTCCCTAACCTCCCCTA 59.707 57.143 0.00 0.00 0.00 3.53
3991 4948 4.038633 ACCCTATCAAGTCCTTCCCTAAC 58.961 47.826 0.00 0.00 0.00 2.34
4000 4957 7.226720 CACATTACATACAACCCTATCAAGTCC 59.773 40.741 0.00 0.00 0.00 3.85
4053 5010 5.301045 CACATGTTCCTCATTGATAATGGCT 59.699 40.000 0.00 0.00 39.38 4.75
4141 5099 1.661509 GCTTCACACGGCCTTTTGC 60.662 57.895 0.00 0.00 40.16 3.68
4204 5162 3.258123 GCCTTTTCCCATGTTGTGTGTAT 59.742 43.478 0.00 0.00 0.00 2.29
4206 5164 1.412343 GCCTTTTCCCATGTTGTGTGT 59.588 47.619 0.00 0.00 0.00 3.72
4208 5166 2.086610 AGCCTTTTCCCATGTTGTGT 57.913 45.000 0.00 0.00 0.00 3.72
4248 5206 0.378962 ATGTACGAGCAGCGAGAGAC 59.621 55.000 5.99 0.11 44.57 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.