Multiple sequence alignment - TraesCS5A01G519000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G519000 chr5A 100.000 3296 0 0 1 3296 680752615 680755910 0.000000e+00 6087.0
1 TraesCS5A01G519000 chr5A 94.572 2008 74 15 552 2531 701985674 701983674 0.000000e+00 3072.0
2 TraesCS5A01G519000 chr5A 94.707 1965 92 10 555 2515 647551125 647553081 0.000000e+00 3042.0
3 TraesCS5A01G519000 chr5A 97.872 752 15 1 2546 3296 96612466 96611715 0.000000e+00 1299.0
4 TraesCS5A01G519000 chr5A 86.924 543 64 4 7 544 680661478 680660938 1.310000e-168 603.0
5 TraesCS5A01G519000 chr5A 79.412 204 24 11 193 392 680694432 680694243 9.600000e-26 128.0
6 TraesCS5A01G519000 chr2A 97.931 1982 35 4 553 2531 461392279 461394257 0.000000e+00 3428.0
7 TraesCS5A01G519000 chr2A 98.005 752 13 2 2546 3296 73457621 73458371 0.000000e+00 1304.0
8 TraesCS5A01G519000 chr2A 97.262 767 21 0 2530 3296 67368755 67367989 0.000000e+00 1301.0
9 TraesCS5A01G519000 chr2A 97.872 752 15 1 2546 3296 433240610 433241361 0.000000e+00 1299.0
10 TraesCS5A01G519000 chr2A 97.043 744 18 1 2553 3296 37391413 37390674 0.000000e+00 1249.0
11 TraesCS5A01G519000 chr1A 97.379 1984 46 4 551 2531 302911825 302913805 0.000000e+00 3371.0
12 TraesCS5A01G519000 chr1A 97.739 752 16 1 2546 3296 539862492 539861741 0.000000e+00 1293.0
13 TraesCS5A01G519000 chr6A 96.795 1997 48 6 549 2531 428285579 428287573 0.000000e+00 3319.0
14 TraesCS5A01G519000 chr6A 97.377 1258 28 2 1282 2535 608061677 608062933 0.000000e+00 2135.0
15 TraesCS5A01G519000 chr6A 97.739 752 16 1 2546 3296 55930484 55931235 0.000000e+00 1293.0
16 TraesCS5A01G519000 chr3A 96.496 1998 47 4 555 2531 715213483 715215478 0.000000e+00 3280.0
17 TraesCS5A01G519000 chr3A 96.111 1980 70 5 555 2531 37632900 37634875 0.000000e+00 3223.0
18 TraesCS5A01G519000 chr3A 96.117 1983 47 10 555 2531 27908720 27906762 0.000000e+00 3208.0
19 TraesCS5A01G519000 chr3A 97.117 763 20 1 2534 3296 702680922 702680162 0.000000e+00 1286.0
20 TraesCS5A01G519000 chr7A 95.459 2004 51 11 555 2531 147920462 147918472 0.000000e+00 3160.0
21 TraesCS5A01G519000 chr7A 97.386 765 20 0 2532 3296 8971081 8970317 0.000000e+00 1303.0
22 TraesCS5A01G519000 chr7A 96.801 719 20 1 2578 3296 678904983 678905698 0.000000e+00 1197.0
23 TraesCS5A01G519000 chr7A 95.455 44 2 0 2522 2565 645067217 645067174 1.640000e-08 71.3
24 TraesCS5A01G519000 chr4A 95.202 1980 86 6 555 2531 521945178 521947151 0.000000e+00 3121.0
25 TraesCS5A01G519000 chr4A 97.386 765 20 0 2532 3296 26175089 26175853 0.000000e+00 1303.0
26 TraesCS5A01G519000 chr4D 89.599 548 51 4 1 544 499696913 499697458 0.000000e+00 691.0
27 TraesCS5A01G519000 chr4B 85.766 548 71 5 1 544 642748248 642747704 1.030000e-159 573.0
28 TraesCS5A01G519000 chr4B 79.381 194 28 5 201 392 642777564 642777381 3.450000e-25 126.0
29 TraesCS5A01G519000 chr6D 95.556 45 0 1 2521 2565 288810664 288810622 1.640000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G519000 chr5A 680752615 680755910 3295 False 6087 6087 100.000 1 3296 1 chr5A.!!$F2 3295
1 TraesCS5A01G519000 chr5A 701983674 701985674 2000 True 3072 3072 94.572 552 2531 1 chr5A.!!$R4 1979
2 TraesCS5A01G519000 chr5A 647551125 647553081 1956 False 3042 3042 94.707 555 2515 1 chr5A.!!$F1 1960
3 TraesCS5A01G519000 chr5A 96611715 96612466 751 True 1299 1299 97.872 2546 3296 1 chr5A.!!$R1 750
4 TraesCS5A01G519000 chr5A 680660938 680661478 540 True 603 603 86.924 7 544 1 chr5A.!!$R2 537
5 TraesCS5A01G519000 chr2A 461392279 461394257 1978 False 3428 3428 97.931 553 2531 1 chr2A.!!$F3 1978
6 TraesCS5A01G519000 chr2A 73457621 73458371 750 False 1304 1304 98.005 2546 3296 1 chr2A.!!$F1 750
7 TraesCS5A01G519000 chr2A 67367989 67368755 766 True 1301 1301 97.262 2530 3296 1 chr2A.!!$R2 766
8 TraesCS5A01G519000 chr2A 433240610 433241361 751 False 1299 1299 97.872 2546 3296 1 chr2A.!!$F2 750
9 TraesCS5A01G519000 chr2A 37390674 37391413 739 True 1249 1249 97.043 2553 3296 1 chr2A.!!$R1 743
10 TraesCS5A01G519000 chr1A 302911825 302913805 1980 False 3371 3371 97.379 551 2531 1 chr1A.!!$F1 1980
11 TraesCS5A01G519000 chr1A 539861741 539862492 751 True 1293 1293 97.739 2546 3296 1 chr1A.!!$R1 750
12 TraesCS5A01G519000 chr6A 428285579 428287573 1994 False 3319 3319 96.795 549 2531 1 chr6A.!!$F2 1982
13 TraesCS5A01G519000 chr6A 608061677 608062933 1256 False 2135 2135 97.377 1282 2535 1 chr6A.!!$F3 1253
14 TraesCS5A01G519000 chr6A 55930484 55931235 751 False 1293 1293 97.739 2546 3296 1 chr6A.!!$F1 750
15 TraesCS5A01G519000 chr3A 715213483 715215478 1995 False 3280 3280 96.496 555 2531 1 chr3A.!!$F2 1976
16 TraesCS5A01G519000 chr3A 37632900 37634875 1975 False 3223 3223 96.111 555 2531 1 chr3A.!!$F1 1976
17 TraesCS5A01G519000 chr3A 27906762 27908720 1958 True 3208 3208 96.117 555 2531 1 chr3A.!!$R1 1976
18 TraesCS5A01G519000 chr3A 702680162 702680922 760 True 1286 1286 97.117 2534 3296 1 chr3A.!!$R2 762
19 TraesCS5A01G519000 chr7A 147918472 147920462 1990 True 3160 3160 95.459 555 2531 1 chr7A.!!$R2 1976
20 TraesCS5A01G519000 chr7A 8970317 8971081 764 True 1303 1303 97.386 2532 3296 1 chr7A.!!$R1 764
21 TraesCS5A01G519000 chr7A 678904983 678905698 715 False 1197 1197 96.801 2578 3296 1 chr7A.!!$F1 718
22 TraesCS5A01G519000 chr4A 521945178 521947151 1973 False 3121 3121 95.202 555 2531 1 chr4A.!!$F2 1976
23 TraesCS5A01G519000 chr4A 26175089 26175853 764 False 1303 1303 97.386 2532 3296 1 chr4A.!!$F1 764
24 TraesCS5A01G519000 chr4D 499696913 499697458 545 False 691 691 89.599 1 544 1 chr4D.!!$F1 543
25 TraesCS5A01G519000 chr4B 642747704 642748248 544 True 573 573 85.766 1 544 1 chr4B.!!$R1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 257 0.034756 TGTCCATCTCCACCACGTTG 59.965 55.0 0.0 0.0 0.0 4.10 F
257 258 0.034896 GTCCATCTCCACCACGTTGT 59.965 55.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2239 2364 0.034186 TCCTTGCTGCCATACCCTTG 60.034 55.000 0.00 0.0 0.00 3.61 R
2382 2507 3.085533 TCACATTCCCCCAAAATGTACG 58.914 45.455 1.52 0.0 43.62 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 1.202927 TGCTGAAACCTCCCCTTGAAG 60.203 52.381 0.00 0.00 0.00 3.02
55 56 1.228510 CCTCCCCTTGAAGGCATCC 59.771 63.158 5.50 0.00 32.73 3.51
85 86 1.936547 GTCTCTGAATTGATCACCGCC 59.063 52.381 0.00 0.00 33.47 6.13
88 89 2.051804 CTGAATTGATCACCGCCCGC 62.052 60.000 0.00 0.00 33.47 6.13
89 90 2.045438 AATTGATCACCGCCCGCA 60.045 55.556 0.00 0.00 0.00 5.69
90 91 2.051804 GAATTGATCACCGCCCGCAG 62.052 60.000 0.00 0.00 0.00 5.18
91 92 2.819984 AATTGATCACCGCCCGCAGT 62.820 55.000 0.00 0.00 0.00 4.40
92 93 1.966901 ATTGATCACCGCCCGCAGTA 61.967 55.000 0.00 0.00 0.00 2.74
93 94 2.279517 GATCACCGCCCGCAGTAG 60.280 66.667 0.00 0.00 0.00 2.57
94 95 4.530857 ATCACCGCCCGCAGTAGC 62.531 66.667 0.00 0.00 37.42 3.58
104 105 2.743928 GCAGTAGCGCAACAGCCT 60.744 61.111 11.47 0.00 38.01 4.58
105 106 3.031964 GCAGTAGCGCAACAGCCTG 62.032 63.158 11.47 6.89 38.01 4.85
106 107 2.743928 AGTAGCGCAACAGCCTGC 60.744 61.111 11.47 0.00 39.04 4.85
107 108 3.049674 GTAGCGCAACAGCCTGCA 61.050 61.111 11.47 0.00 42.77 4.41
108 109 2.281414 TAGCGCAACAGCCTGCAA 60.281 55.556 11.47 0.00 42.77 4.08
109 110 1.675310 TAGCGCAACAGCCTGCAAT 60.675 52.632 11.47 0.00 42.77 3.56
110 111 0.392327 TAGCGCAACAGCCTGCAATA 60.392 50.000 11.47 0.00 42.77 1.90
111 112 1.212490 GCGCAACAGCCTGCAATAA 59.788 52.632 0.30 0.00 42.77 1.40
112 113 0.179129 GCGCAACAGCCTGCAATAAT 60.179 50.000 0.30 0.00 42.77 1.28
113 114 1.736696 GCGCAACAGCCTGCAATAATT 60.737 47.619 0.30 0.00 42.77 1.40
114 115 2.609350 CGCAACAGCCTGCAATAATTT 58.391 42.857 0.00 0.00 42.77 1.82
115 116 2.346244 CGCAACAGCCTGCAATAATTTG 59.654 45.455 0.00 0.00 42.77 2.32
116 117 3.587923 GCAACAGCCTGCAATAATTTGA 58.412 40.909 0.00 0.00 42.17 2.69
117 118 4.186159 GCAACAGCCTGCAATAATTTGAT 58.814 39.130 0.00 0.00 42.17 2.57
118 119 4.269363 GCAACAGCCTGCAATAATTTGATC 59.731 41.667 0.00 0.00 42.17 2.92
119 120 4.660789 ACAGCCTGCAATAATTTGATCC 57.339 40.909 0.00 0.00 34.60 3.36
120 121 4.025360 ACAGCCTGCAATAATTTGATCCA 58.975 39.130 0.00 0.00 34.60 3.41
121 122 4.142093 ACAGCCTGCAATAATTTGATCCAC 60.142 41.667 0.00 0.00 34.60 4.02
122 123 4.025360 AGCCTGCAATAATTTGATCCACA 58.975 39.130 0.00 0.00 34.60 4.17
123 124 4.114794 GCCTGCAATAATTTGATCCACAC 58.885 43.478 0.00 0.00 34.60 3.82
124 125 4.381825 GCCTGCAATAATTTGATCCACACA 60.382 41.667 0.00 0.00 34.60 3.72
125 126 5.722263 CCTGCAATAATTTGATCCACACAA 58.278 37.500 0.00 0.00 34.60 3.33
126 127 5.808540 CCTGCAATAATTTGATCCACACAAG 59.191 40.000 0.00 0.00 34.60 3.16
127 128 6.350361 CCTGCAATAATTTGATCCACACAAGA 60.350 38.462 0.00 0.00 34.60 3.02
128 129 6.990798 TGCAATAATTTGATCCACACAAGAA 58.009 32.000 0.00 0.00 34.60 2.52
129 130 7.440198 TGCAATAATTTGATCCACACAAGAAA 58.560 30.769 0.00 0.00 34.60 2.52
130 131 7.384660 TGCAATAATTTGATCCACACAAGAAAC 59.615 33.333 0.00 0.00 34.60 2.78
131 132 7.599998 GCAATAATTTGATCCACACAAGAAACT 59.400 33.333 0.00 0.00 34.60 2.66
132 133 9.480053 CAATAATTTGATCCACACAAGAAACTT 57.520 29.630 0.00 0.00 34.60 2.66
133 134 9.480053 AATAATTTGATCCACACAAGAAACTTG 57.520 29.630 9.51 9.51 0.00 3.16
134 135 5.913137 TTTGATCCACACAAGAAACTTGT 57.087 34.783 10.73 10.73 0.00 3.16
135 136 7.581213 ATTTGATCCACACAAGAAACTTGTA 57.419 32.000 15.17 2.78 0.00 2.41
136 137 7.397892 TTTGATCCACACAAGAAACTTGTAA 57.602 32.000 15.17 3.93 0.00 2.41
137 138 7.397892 TTGATCCACACAAGAAACTTGTAAA 57.602 32.000 15.17 4.15 0.00 2.01
138 139 7.397892 TGATCCACACAAGAAACTTGTAAAA 57.602 32.000 15.17 4.44 0.00 1.52
139 140 7.831753 TGATCCACACAAGAAACTTGTAAAAA 58.168 30.769 15.17 4.73 0.00 1.94
140 141 7.757624 TGATCCACACAAGAAACTTGTAAAAAC 59.242 33.333 15.17 7.83 0.00 2.43
141 142 7.222000 TCCACACAAGAAACTTGTAAAAACT 57.778 32.000 15.17 0.00 0.00 2.66
142 143 8.338072 TCCACACAAGAAACTTGTAAAAACTA 57.662 30.769 15.17 0.00 0.00 2.24
143 144 8.794553 TCCACACAAGAAACTTGTAAAAACTAA 58.205 29.630 15.17 0.00 0.00 2.24
144 145 9.413048 CCACACAAGAAACTTGTAAAAACTAAA 57.587 29.630 15.17 0.00 0.00 1.85
146 147 9.135843 ACACAAGAAACTTGTAAAAACTAAAGC 57.864 29.630 15.17 0.00 0.00 3.51
147 148 9.353999 CACAAGAAACTTGTAAAAACTAAAGCT 57.646 29.630 15.17 0.00 0.00 3.74
155 156 9.783256 ACTTGTAAAAACTAAAGCTAACAACTG 57.217 29.630 0.00 0.00 0.00 3.16
156 157 8.623310 TTGTAAAAACTAAAGCTAACAACTGC 57.377 30.769 0.00 0.00 0.00 4.40
157 158 7.197703 TGTAAAAACTAAAGCTAACAACTGCC 58.802 34.615 0.00 0.00 0.00 4.85
158 159 5.845391 AAAACTAAAGCTAACAACTGCCA 57.155 34.783 0.00 0.00 0.00 4.92
159 160 6.405278 AAAACTAAAGCTAACAACTGCCAT 57.595 33.333 0.00 0.00 0.00 4.40
160 161 5.376854 AACTAAAGCTAACAACTGCCATG 57.623 39.130 0.00 0.00 0.00 3.66
161 162 4.651778 ACTAAAGCTAACAACTGCCATGA 58.348 39.130 0.00 0.00 0.00 3.07
162 163 3.923017 AAAGCTAACAACTGCCATGAC 57.077 42.857 0.00 0.00 0.00 3.06
163 164 2.867109 AGCTAACAACTGCCATGACT 57.133 45.000 0.00 0.00 0.00 3.41
164 165 2.704572 AGCTAACAACTGCCATGACTC 58.295 47.619 0.00 0.00 0.00 3.36
165 166 2.038952 AGCTAACAACTGCCATGACTCA 59.961 45.455 0.00 0.00 0.00 3.41
166 167 3.012518 GCTAACAACTGCCATGACTCAT 58.987 45.455 0.00 0.00 0.00 2.90
167 168 3.441572 GCTAACAACTGCCATGACTCATT 59.558 43.478 0.00 0.00 0.00 2.57
168 169 4.082571 GCTAACAACTGCCATGACTCATTT 60.083 41.667 0.00 0.00 0.00 2.32
169 170 4.510038 AACAACTGCCATGACTCATTTC 57.490 40.909 0.00 0.00 0.00 2.17
170 171 3.759581 ACAACTGCCATGACTCATTTCT 58.240 40.909 0.00 0.00 0.00 2.52
171 172 4.910195 ACAACTGCCATGACTCATTTCTA 58.090 39.130 0.00 0.00 0.00 2.10
172 173 5.316167 ACAACTGCCATGACTCATTTCTAA 58.684 37.500 0.00 0.00 0.00 2.10
173 174 5.413833 ACAACTGCCATGACTCATTTCTAAG 59.586 40.000 0.00 0.00 0.00 2.18
174 175 4.521146 ACTGCCATGACTCATTTCTAAGG 58.479 43.478 0.00 0.00 0.00 2.69
175 176 4.225942 ACTGCCATGACTCATTTCTAAGGA 59.774 41.667 0.00 0.00 0.00 3.36
176 177 4.517285 TGCCATGACTCATTTCTAAGGAC 58.483 43.478 0.00 0.00 0.00 3.85
177 178 4.019411 TGCCATGACTCATTTCTAAGGACA 60.019 41.667 0.00 0.00 0.00 4.02
178 179 4.574013 GCCATGACTCATTTCTAAGGACAG 59.426 45.833 0.00 0.00 0.00 3.51
179 180 4.574013 CCATGACTCATTTCTAAGGACAGC 59.426 45.833 0.00 0.00 0.00 4.40
180 181 4.890158 TGACTCATTTCTAAGGACAGCA 57.110 40.909 0.00 0.00 0.00 4.41
181 182 5.227569 TGACTCATTTCTAAGGACAGCAA 57.772 39.130 0.00 0.00 0.00 3.91
182 183 5.620206 TGACTCATTTCTAAGGACAGCAAA 58.380 37.500 0.00 0.00 0.00 3.68
183 184 6.240894 TGACTCATTTCTAAGGACAGCAAAT 58.759 36.000 0.00 0.00 0.00 2.32
184 185 6.716628 TGACTCATTTCTAAGGACAGCAAATT 59.283 34.615 0.00 0.00 0.00 1.82
185 186 6.917533 ACTCATTTCTAAGGACAGCAAATTG 58.082 36.000 0.00 0.00 0.00 2.32
186 187 6.071728 ACTCATTTCTAAGGACAGCAAATTGG 60.072 38.462 0.00 0.00 0.00 3.16
187 188 5.774690 TCATTTCTAAGGACAGCAAATTGGT 59.225 36.000 0.00 0.00 0.00 3.67
188 189 6.267471 TCATTTCTAAGGACAGCAAATTGGTT 59.733 34.615 0.00 0.00 0.00 3.67
189 190 5.452078 TTCTAAGGACAGCAAATTGGTTG 57.548 39.130 0.00 0.00 40.50 3.77
190 191 3.826157 TCTAAGGACAGCAAATTGGTTGG 59.174 43.478 1.43 0.00 37.73 3.77
191 192 0.681175 AGGACAGCAAATTGGTTGGC 59.319 50.000 1.43 0.00 37.73 4.52
192 193 0.392336 GGACAGCAAATTGGTTGGCA 59.608 50.000 4.75 0.00 37.73 4.92
193 194 1.606224 GGACAGCAAATTGGTTGGCAG 60.606 52.381 4.75 0.00 37.73 4.85
194 195 0.393820 ACAGCAAATTGGTTGGCAGG 59.606 50.000 1.43 0.00 37.73 4.85
195 196 0.320946 CAGCAAATTGGTTGGCAGGG 60.321 55.000 0.00 0.00 37.73 4.45
196 197 1.672030 GCAAATTGGTTGGCAGGGC 60.672 57.895 0.00 0.00 37.73 5.19
197 198 1.753470 CAAATTGGTTGGCAGGGCA 59.247 52.632 0.00 0.00 33.18 5.36
198 199 0.325602 CAAATTGGTTGGCAGGGCAT 59.674 50.000 0.00 0.00 33.18 4.40
199 200 0.325602 AAATTGGTTGGCAGGGCATG 59.674 50.000 0.00 0.00 0.00 4.06
200 201 0.837260 AATTGGTTGGCAGGGCATGT 60.837 50.000 0.00 0.00 0.00 3.21
201 202 0.040942 ATTGGTTGGCAGGGCATGTA 59.959 50.000 0.00 0.00 0.00 2.29
202 203 0.040942 TTGGTTGGCAGGGCATGTAT 59.959 50.000 0.00 0.00 0.00 2.29
203 204 0.922626 TGGTTGGCAGGGCATGTATA 59.077 50.000 0.00 0.00 0.00 1.47
204 205 1.498576 TGGTTGGCAGGGCATGTATAT 59.501 47.619 0.00 0.00 0.00 0.86
205 206 1.888512 GGTTGGCAGGGCATGTATATG 59.111 52.381 0.00 0.00 37.36 1.78
206 207 2.586425 GTTGGCAGGGCATGTATATGT 58.414 47.619 0.00 0.00 36.65 2.29
207 208 3.497763 GGTTGGCAGGGCATGTATATGTA 60.498 47.826 0.00 0.00 36.65 2.29
208 209 4.335416 GTTGGCAGGGCATGTATATGTAT 58.665 43.478 0.00 0.00 36.65 2.29
209 210 5.496556 GTTGGCAGGGCATGTATATGTATA 58.503 41.667 0.00 0.00 36.65 1.47
210 211 5.357742 TGGCAGGGCATGTATATGTATAG 57.642 43.478 0.00 0.00 36.65 1.31
211 212 5.029474 TGGCAGGGCATGTATATGTATAGA 58.971 41.667 0.00 0.00 36.65 1.98
212 213 5.104941 TGGCAGGGCATGTATATGTATAGAC 60.105 44.000 0.00 0.00 36.65 2.59
213 214 5.129485 GGCAGGGCATGTATATGTATAGACT 59.871 44.000 0.00 0.00 36.65 3.24
214 215 6.352222 GGCAGGGCATGTATATGTATAGACTT 60.352 42.308 0.00 0.00 36.65 3.01
215 216 6.536582 GCAGGGCATGTATATGTATAGACTTG 59.463 42.308 0.00 7.69 36.65 3.16
216 217 6.536582 CAGGGCATGTATATGTATAGACTTGC 59.463 42.308 20.32 20.32 46.25 4.01
219 220 7.763172 GCATGTATATGTATAGACTTGCCTC 57.237 40.000 18.88 1.95 43.71 4.70
220 221 7.551585 GCATGTATATGTATAGACTTGCCTCT 58.448 38.462 18.88 0.00 43.71 3.69
221 222 8.037758 GCATGTATATGTATAGACTTGCCTCTT 58.962 37.037 18.88 0.00 43.71 2.85
222 223 9.363763 CATGTATATGTATAGACTTGCCTCTTG 57.636 37.037 0.00 0.00 0.00 3.02
223 224 8.478775 TGTATATGTATAGACTTGCCTCTTGT 57.521 34.615 0.00 0.00 0.00 3.16
224 225 8.924303 TGTATATGTATAGACTTGCCTCTTGTT 58.076 33.333 0.00 0.00 0.00 2.83
225 226 9.765795 GTATATGTATAGACTTGCCTCTTGTTT 57.234 33.333 0.00 0.00 0.00 2.83
226 227 6.992063 ATGTATAGACTTGCCTCTTGTTTG 57.008 37.500 0.00 0.00 0.00 2.93
227 228 4.695455 TGTATAGACTTGCCTCTTGTTTGC 59.305 41.667 0.00 0.00 0.00 3.68
228 229 2.355010 AGACTTGCCTCTTGTTTGCT 57.645 45.000 0.00 0.00 0.00 3.91
229 230 1.952296 AGACTTGCCTCTTGTTTGCTG 59.048 47.619 0.00 0.00 0.00 4.41
230 231 1.949525 GACTTGCCTCTTGTTTGCTGA 59.050 47.619 0.00 0.00 0.00 4.26
231 232 2.555757 GACTTGCCTCTTGTTTGCTGAT 59.444 45.455 0.00 0.00 0.00 2.90
232 233 3.753272 GACTTGCCTCTTGTTTGCTGATA 59.247 43.478 0.00 0.00 0.00 2.15
233 234 3.755378 ACTTGCCTCTTGTTTGCTGATAG 59.245 43.478 0.00 0.00 0.00 2.08
234 235 2.086869 TGCCTCTTGTTTGCTGATAGC 58.913 47.619 0.00 0.00 42.82 2.97
247 248 3.072944 GCTGATAGCAATGTCCATCTCC 58.927 50.000 0.00 0.00 41.89 3.71
248 249 3.495629 GCTGATAGCAATGTCCATCTCCA 60.496 47.826 0.00 0.00 41.89 3.86
249 250 4.063689 CTGATAGCAATGTCCATCTCCAC 58.936 47.826 0.00 0.00 0.00 4.02
250 251 3.181451 TGATAGCAATGTCCATCTCCACC 60.181 47.826 0.00 0.00 0.00 4.61
251 252 0.994247 AGCAATGTCCATCTCCACCA 59.006 50.000 0.00 0.00 0.00 4.17
252 253 1.098050 GCAATGTCCATCTCCACCAC 58.902 55.000 0.00 0.00 0.00 4.16
253 254 1.372582 CAATGTCCATCTCCACCACG 58.627 55.000 0.00 0.00 0.00 4.94
254 255 0.984230 AATGTCCATCTCCACCACGT 59.016 50.000 0.00 0.00 0.00 4.49
255 256 0.984230 ATGTCCATCTCCACCACGTT 59.016 50.000 0.00 0.00 0.00 3.99
256 257 0.034756 TGTCCATCTCCACCACGTTG 59.965 55.000 0.00 0.00 0.00 4.10
257 258 0.034896 GTCCATCTCCACCACGTTGT 59.965 55.000 0.00 0.00 0.00 3.32
258 259 0.320374 TCCATCTCCACCACGTTGTC 59.680 55.000 0.00 0.00 0.00 3.18
259 260 0.673644 CCATCTCCACCACGTTGTCC 60.674 60.000 0.00 0.00 0.00 4.02
260 261 0.321671 CATCTCCACCACGTTGTCCT 59.678 55.000 0.00 0.00 0.00 3.85
261 262 0.321671 ATCTCCACCACGTTGTCCTG 59.678 55.000 0.00 0.00 0.00 3.86
262 263 1.301716 CTCCACCACGTTGTCCTGG 60.302 63.158 0.00 0.00 0.00 4.45
263 264 2.040009 CTCCACCACGTTGTCCTGGT 62.040 60.000 0.00 0.00 41.78 4.00
264 265 1.153046 CCACCACGTTGTCCTGGTT 60.153 57.895 0.00 0.00 38.84 3.67
265 266 0.750182 CCACCACGTTGTCCTGGTTT 60.750 55.000 0.00 0.00 38.84 3.27
266 267 0.661020 CACCACGTTGTCCTGGTTTC 59.339 55.000 0.00 0.00 38.84 2.78
267 268 0.544697 ACCACGTTGTCCTGGTTTCT 59.455 50.000 0.00 0.00 37.51 2.52
268 269 1.226746 CCACGTTGTCCTGGTTTCTC 58.773 55.000 0.00 0.00 0.00 2.87
269 270 1.202651 CCACGTTGTCCTGGTTTCTCT 60.203 52.381 0.00 0.00 0.00 3.10
270 271 2.561569 CACGTTGTCCTGGTTTCTCTT 58.438 47.619 0.00 0.00 0.00 2.85
271 272 2.287915 CACGTTGTCCTGGTTTCTCTTG 59.712 50.000 0.00 0.00 0.00 3.02
272 273 1.264288 CGTTGTCCTGGTTTCTCTTGC 59.736 52.381 0.00 0.00 0.00 4.01
273 274 2.297701 GTTGTCCTGGTTTCTCTTGCA 58.702 47.619 0.00 0.00 0.00 4.08
274 275 1.967319 TGTCCTGGTTTCTCTTGCAC 58.033 50.000 0.00 0.00 0.00 4.57
275 276 1.239347 GTCCTGGTTTCTCTTGCACC 58.761 55.000 0.00 0.00 0.00 5.01
276 277 0.843309 TCCTGGTTTCTCTTGCACCA 59.157 50.000 0.00 0.00 38.30 4.17
279 280 1.679139 TGGTTTCTCTTGCACCAGTG 58.321 50.000 0.00 0.00 35.57 3.66
296 297 4.284123 GCTTCAGCACCGACATCA 57.716 55.556 0.00 0.00 41.59 3.07
297 298 1.790387 GCTTCAGCACCGACATCAC 59.210 57.895 0.00 0.00 41.59 3.06
298 299 1.639298 GCTTCAGCACCGACATCACC 61.639 60.000 0.00 0.00 41.59 4.02
299 300 1.354337 CTTCAGCACCGACATCACCG 61.354 60.000 0.00 0.00 0.00 4.94
300 301 1.811645 TTCAGCACCGACATCACCGA 61.812 55.000 0.00 0.00 0.00 4.69
301 302 1.153568 CAGCACCGACATCACCGAT 60.154 57.895 0.00 0.00 0.00 4.18
302 303 1.153568 AGCACCGACATCACCGATG 60.154 57.895 2.45 2.45 44.71 3.84
315 316 6.843069 CATCACCGATGTTTGATGTATACA 57.157 37.500 8.27 8.27 42.80 2.29
316 317 6.649436 CATCACCGATGTTTGATGTATACAC 58.351 40.000 7.96 3.26 42.80 2.90
317 318 5.725362 TCACCGATGTTTGATGTATACACA 58.275 37.500 7.96 5.92 39.52 3.72
318 319 5.810074 TCACCGATGTTTGATGTATACACAG 59.190 40.000 7.96 0.00 38.30 3.66
319 320 4.570772 ACCGATGTTTGATGTATACACAGC 59.429 41.667 7.96 3.22 41.55 4.40
320 321 4.811024 CCGATGTTTGATGTATACACAGCT 59.189 41.667 7.96 0.00 41.73 4.24
321 322 5.050769 CCGATGTTTGATGTATACACAGCTC 60.051 44.000 7.96 2.38 41.73 4.09
322 323 5.331830 CGATGTTTGATGTATACACAGCTCG 60.332 44.000 7.96 5.10 41.73 5.03
323 324 4.816392 TGTTTGATGTATACACAGCTCGT 58.184 39.130 7.96 0.00 41.73 4.18
324 325 4.862574 TGTTTGATGTATACACAGCTCGTC 59.137 41.667 7.96 0.47 41.73 4.20
325 326 3.334272 TGATGTATACACAGCTCGTCG 57.666 47.619 7.96 0.00 41.73 5.12
326 327 2.681344 TGATGTATACACAGCTCGTCGT 59.319 45.455 7.96 0.00 41.73 4.34
327 328 2.819422 TGTATACACAGCTCGTCGTC 57.181 50.000 0.08 0.00 0.00 4.20
328 329 2.078392 TGTATACACAGCTCGTCGTCA 58.922 47.619 0.08 0.00 0.00 4.35
329 330 2.485038 TGTATACACAGCTCGTCGTCAA 59.515 45.455 0.08 0.00 0.00 3.18
330 331 1.978542 ATACACAGCTCGTCGTCAAC 58.021 50.000 0.00 0.00 0.00 3.18
331 332 0.949397 TACACAGCTCGTCGTCAACT 59.051 50.000 0.00 0.00 0.00 3.16
332 333 0.949397 ACACAGCTCGTCGTCAACTA 59.051 50.000 0.00 0.00 0.00 2.24
333 334 1.328439 CACAGCTCGTCGTCAACTAC 58.672 55.000 0.00 0.00 0.00 2.73
334 335 0.949397 ACAGCTCGTCGTCAACTACA 59.051 50.000 0.00 0.00 0.00 2.74
335 336 1.540267 ACAGCTCGTCGTCAACTACAT 59.460 47.619 0.00 0.00 0.00 2.29
336 337 2.745821 ACAGCTCGTCGTCAACTACATA 59.254 45.455 0.00 0.00 0.00 2.29
337 338 3.181509 ACAGCTCGTCGTCAACTACATAG 60.182 47.826 0.00 0.00 0.00 2.23
338 339 2.355132 AGCTCGTCGTCAACTACATAGG 59.645 50.000 0.00 0.00 0.00 2.57
339 340 2.097142 GCTCGTCGTCAACTACATAGGT 59.903 50.000 0.00 0.00 0.00 3.08
340 341 3.681855 CTCGTCGTCAACTACATAGGTG 58.318 50.000 0.00 0.00 42.33 4.00
341 342 3.076621 TCGTCGTCAACTACATAGGTGT 58.923 45.455 3.93 0.00 41.68 4.16
342 343 3.120095 TCGTCGTCAACTACATAGGTGTG 60.120 47.826 3.93 0.00 41.68 3.82
343 344 3.120095 CGTCGTCAACTACATAGGTGTGA 60.120 47.826 3.93 1.58 41.68 3.58
344 345 4.438336 CGTCGTCAACTACATAGGTGTGAT 60.438 45.833 3.93 0.00 41.68 3.06
345 346 5.035443 GTCGTCAACTACATAGGTGTGATC 58.965 45.833 3.93 0.00 41.68 2.92
346 347 4.035684 CGTCAACTACATAGGTGTGATCG 58.964 47.826 3.93 2.69 41.68 3.69
347 348 4.438336 CGTCAACTACATAGGTGTGATCGT 60.438 45.833 3.93 0.00 41.68 3.73
348 349 5.035443 GTCAACTACATAGGTGTGATCGTC 58.965 45.833 3.93 0.00 41.68 4.20
349 350 3.965292 ACTACATAGGTGTGATCGTCG 57.035 47.619 0.00 0.00 39.39 5.12
350 351 3.538591 ACTACATAGGTGTGATCGTCGA 58.461 45.455 0.00 0.00 39.39 4.20
351 352 2.846039 ACATAGGTGTGATCGTCGAC 57.154 50.000 5.18 5.18 37.14 4.20
352 353 2.089201 ACATAGGTGTGATCGTCGACA 58.911 47.619 17.16 3.13 37.14 4.35
353 354 2.490509 ACATAGGTGTGATCGTCGACAA 59.509 45.455 17.16 0.00 37.14 3.18
354 355 3.057104 ACATAGGTGTGATCGTCGACAAA 60.057 43.478 17.16 2.91 37.14 2.83
355 356 1.779569 AGGTGTGATCGTCGACAAAC 58.220 50.000 17.16 8.05 0.00 2.93
356 357 0.788391 GGTGTGATCGTCGACAAACC 59.212 55.000 17.16 16.38 37.26 3.27
357 358 0.788391 GTGTGATCGTCGACAAACCC 59.212 55.000 17.16 0.42 0.00 4.11
358 359 0.677288 TGTGATCGTCGACAAACCCT 59.323 50.000 17.16 0.00 0.00 4.34
359 360 1.068474 GTGATCGTCGACAAACCCTG 58.932 55.000 17.16 0.00 0.00 4.45
360 361 0.037697 TGATCGTCGACAAACCCTGG 60.038 55.000 17.16 0.00 0.00 4.45
361 362 0.245539 GATCGTCGACAAACCCTGGA 59.754 55.000 17.16 1.99 0.00 3.86
362 363 0.902531 ATCGTCGACAAACCCTGGAT 59.097 50.000 17.16 4.47 0.00 3.41
363 364 0.682852 TCGTCGACAAACCCTGGATT 59.317 50.000 17.16 0.00 0.00 3.01
364 365 0.796312 CGTCGACAAACCCTGGATTG 59.204 55.000 17.16 4.79 34.66 2.67
365 366 0.521735 GTCGACAAACCCTGGATTGC 59.478 55.000 11.55 0.00 32.21 3.56
366 367 0.109532 TCGACAAACCCTGGATTGCA 59.890 50.000 6.13 0.00 32.21 4.08
367 368 1.176527 CGACAAACCCTGGATTGCAT 58.823 50.000 6.13 0.00 32.21 3.96
368 369 2.026729 TCGACAAACCCTGGATTGCATA 60.027 45.455 6.13 0.00 32.21 3.14
369 370 2.752354 CGACAAACCCTGGATTGCATAA 59.248 45.455 6.13 0.00 32.21 1.90
370 371 3.192422 CGACAAACCCTGGATTGCATAAA 59.808 43.478 6.13 0.00 32.21 1.40
371 372 4.142182 CGACAAACCCTGGATTGCATAAAT 60.142 41.667 6.13 0.00 32.21 1.40
372 373 5.088680 ACAAACCCTGGATTGCATAAATG 57.911 39.130 6.13 0.00 32.21 2.32
373 374 4.080975 ACAAACCCTGGATTGCATAAATGG 60.081 41.667 6.13 0.00 32.21 3.16
374 375 2.041701 ACCCTGGATTGCATAAATGGC 58.958 47.619 0.00 0.00 0.00 4.40
375 376 2.040939 CCCTGGATTGCATAAATGGCA 58.959 47.619 0.00 0.00 40.00 4.92
376 377 2.635915 CCCTGGATTGCATAAATGGCAT 59.364 45.455 0.00 0.00 41.58 4.40
377 378 3.556213 CCCTGGATTGCATAAATGGCATG 60.556 47.826 0.00 0.00 41.58 4.06
378 379 3.556213 CCTGGATTGCATAAATGGCATGG 60.556 47.826 0.00 0.00 41.58 3.66
379 380 3.306613 TGGATTGCATAAATGGCATGGA 58.693 40.909 0.00 0.00 41.58 3.41
380 381 3.069872 TGGATTGCATAAATGGCATGGAC 59.930 43.478 0.00 0.00 41.58 4.02
381 382 3.322828 GGATTGCATAAATGGCATGGACT 59.677 43.478 0.00 0.00 41.58 3.85
382 383 4.202284 GGATTGCATAAATGGCATGGACTT 60.202 41.667 0.00 0.00 41.58 3.01
383 384 4.822685 TTGCATAAATGGCATGGACTTT 57.177 36.364 0.00 0.00 41.58 2.66
384 385 4.822685 TGCATAAATGGCATGGACTTTT 57.177 36.364 0.00 0.00 36.11 2.27
385 386 5.929058 TGCATAAATGGCATGGACTTTTA 57.071 34.783 0.00 0.00 36.11 1.52
386 387 6.482898 TGCATAAATGGCATGGACTTTTAT 57.517 33.333 0.00 0.00 36.11 1.40
387 388 6.514947 TGCATAAATGGCATGGACTTTTATC 58.485 36.000 0.00 0.00 36.11 1.75
388 389 6.097981 TGCATAAATGGCATGGACTTTTATCA 59.902 34.615 0.00 0.11 36.11 2.15
389 390 7.156673 GCATAAATGGCATGGACTTTTATCAT 58.843 34.615 0.00 0.00 31.42 2.45
390 391 7.658575 GCATAAATGGCATGGACTTTTATCATT 59.341 33.333 0.00 0.00 31.42 2.57
391 392 9.550406 CATAAATGGCATGGACTTTTATCATTT 57.450 29.630 0.00 0.00 31.42 2.32
392 393 7.852971 AAATGGCATGGACTTTTATCATTTG 57.147 32.000 0.00 0.00 33.89 2.32
393 394 4.757594 TGGCATGGACTTTTATCATTTGC 58.242 39.130 0.00 0.00 0.00 3.68
394 395 3.798337 GGCATGGACTTTTATCATTTGCG 59.202 43.478 0.00 0.00 0.00 4.85
395 396 3.243643 GCATGGACTTTTATCATTTGCGC 59.756 43.478 0.00 0.00 0.00 6.09
396 397 4.422840 CATGGACTTTTATCATTTGCGCA 58.577 39.130 5.66 5.66 0.00 6.09
397 398 3.832276 TGGACTTTTATCATTTGCGCAC 58.168 40.909 11.12 0.00 0.00 5.34
398 399 2.845967 GGACTTTTATCATTTGCGCACG 59.154 45.455 11.12 0.95 0.00 5.34
399 400 3.425625 GGACTTTTATCATTTGCGCACGA 60.426 43.478 11.12 7.86 0.00 4.35
400 401 3.747193 ACTTTTATCATTTGCGCACGAG 58.253 40.909 11.12 1.99 0.00 4.18
401 402 2.172593 TTTATCATTTGCGCACGAGC 57.827 45.000 11.12 0.00 37.71 5.03
402 403 1.082690 TTATCATTTGCGCACGAGCA 58.917 45.000 11.12 3.20 46.54 4.26
411 412 4.107051 GCACGAGCAATGCCGCTT 62.107 61.111 14.19 0.00 44.01 4.68
412 413 2.099062 CACGAGCAATGCCGCTTC 59.901 61.111 14.19 0.00 44.01 3.86
413 414 3.127533 ACGAGCAATGCCGCTTCC 61.128 61.111 14.19 0.00 44.01 3.46
414 415 3.880846 CGAGCAATGCCGCTTCCC 61.881 66.667 0.00 0.00 44.01 3.97
415 416 3.880846 GAGCAATGCCGCTTCCCG 61.881 66.667 0.00 0.00 44.01 5.14
426 427 4.148825 CTTCCCGGTCCGGCAGAG 62.149 72.222 25.88 16.79 46.86 3.35
427 428 4.689549 TTCCCGGTCCGGCAGAGA 62.690 66.667 25.88 13.81 46.86 3.10
428 429 3.976490 TTCCCGGTCCGGCAGAGAT 62.976 63.158 25.88 0.00 46.86 2.75
429 430 2.520982 CCCGGTCCGGCAGAGATA 60.521 66.667 25.88 0.00 46.86 1.98
430 431 2.131709 CCCGGTCCGGCAGAGATAA 61.132 63.158 25.88 0.00 46.86 1.75
431 432 1.472662 CCCGGTCCGGCAGAGATAAT 61.473 60.000 25.88 0.00 46.86 1.28
432 433 1.254026 CCGGTCCGGCAGAGATAATA 58.746 55.000 19.48 0.00 41.17 0.98
433 434 1.067776 CCGGTCCGGCAGAGATAATAC 60.068 57.143 19.48 0.00 41.17 1.89
434 435 1.067776 CGGTCCGGCAGAGATAATACC 60.068 57.143 2.34 0.00 0.00 2.73
435 436 1.968493 GGTCCGGCAGAGATAATACCA 59.032 52.381 0.00 0.00 0.00 3.25
436 437 2.288886 GGTCCGGCAGAGATAATACCAC 60.289 54.545 0.00 0.00 0.00 4.16
437 438 2.628657 GTCCGGCAGAGATAATACCACT 59.371 50.000 0.00 0.00 0.00 4.00
438 439 2.891580 TCCGGCAGAGATAATACCACTC 59.108 50.000 0.00 0.00 0.00 3.51
439 440 2.028930 CCGGCAGAGATAATACCACTCC 60.029 54.545 0.00 0.00 0.00 3.85
440 441 2.628178 CGGCAGAGATAATACCACTCCA 59.372 50.000 0.00 0.00 0.00 3.86
441 442 3.553096 CGGCAGAGATAATACCACTCCAC 60.553 52.174 0.00 0.00 0.00 4.02
442 443 3.388024 GGCAGAGATAATACCACTCCACA 59.612 47.826 0.00 0.00 0.00 4.17
443 444 4.141711 GGCAGAGATAATACCACTCCACAA 60.142 45.833 0.00 0.00 0.00 3.33
444 445 5.455326 GGCAGAGATAATACCACTCCACAAT 60.455 44.000 0.00 0.00 0.00 2.71
445 446 6.058183 GCAGAGATAATACCACTCCACAATT 58.942 40.000 0.00 0.00 0.00 2.32
446 447 6.017605 GCAGAGATAATACCACTCCACAATTG 60.018 42.308 3.24 3.24 0.00 2.32
447 448 6.017605 CAGAGATAATACCACTCCACAATTGC 60.018 42.308 5.05 0.00 0.00 3.56
448 449 6.006275 AGATAATACCACTCCACAATTGCT 57.994 37.500 5.05 0.00 0.00 3.91
449 450 6.426587 AGATAATACCACTCCACAATTGCTT 58.573 36.000 5.05 0.00 0.00 3.91
450 451 4.789012 AATACCACTCCACAATTGCTTG 57.211 40.909 5.05 0.00 38.39 4.01
451 452 2.071778 ACCACTCCACAATTGCTTGT 57.928 45.000 5.05 0.00 46.54 3.16
452 453 2.387757 ACCACTCCACAATTGCTTGTT 58.612 42.857 5.05 0.00 43.05 2.83
453 454 2.362077 ACCACTCCACAATTGCTTGTTC 59.638 45.455 5.05 0.00 43.05 3.18
454 455 2.288395 CCACTCCACAATTGCTTGTTCC 60.288 50.000 5.05 0.00 43.05 3.62
455 456 1.608590 ACTCCACAATTGCTTGTTCCG 59.391 47.619 5.05 0.00 43.05 4.30
456 457 1.879380 CTCCACAATTGCTTGTTCCGA 59.121 47.619 5.05 0.00 43.05 4.55
457 458 1.606668 TCCACAATTGCTTGTTCCGAC 59.393 47.619 5.05 0.00 43.05 4.79
458 459 1.335872 CCACAATTGCTTGTTCCGACC 60.336 52.381 5.05 0.00 43.05 4.79
459 460 0.958822 ACAATTGCTTGTTCCGACCC 59.041 50.000 5.05 0.00 43.05 4.46
460 461 0.958091 CAATTGCTTGTTCCGACCCA 59.042 50.000 0.00 0.00 0.00 4.51
461 462 1.545582 CAATTGCTTGTTCCGACCCAT 59.454 47.619 0.00 0.00 0.00 4.00
462 463 1.176527 ATTGCTTGTTCCGACCCATG 58.823 50.000 0.00 0.00 0.00 3.66
463 464 0.893270 TTGCTTGTTCCGACCCATGG 60.893 55.000 4.14 4.14 0.00 3.66
464 465 1.002624 GCTTGTTCCGACCCATGGA 60.003 57.895 15.22 0.00 0.00 3.41
465 466 0.394352 GCTTGTTCCGACCCATGGAT 60.394 55.000 15.22 0.00 34.91 3.41
466 467 1.382522 CTTGTTCCGACCCATGGATG 58.617 55.000 15.22 0.00 34.91 3.51
467 468 0.679640 TTGTTCCGACCCATGGATGC 60.680 55.000 15.22 0.39 34.91 3.91
468 469 1.823899 GTTCCGACCCATGGATGCC 60.824 63.158 15.22 0.00 34.91 4.40
469 470 3.399105 TTCCGACCCATGGATGCCG 62.399 63.158 15.22 10.43 34.91 5.69
470 471 4.175337 CCGACCCATGGATGCCGT 62.175 66.667 15.22 0.83 0.00 5.68
471 472 2.896854 CGACCCATGGATGCCGTG 60.897 66.667 15.22 0.00 40.02 4.94
476 477 2.591753 CATGGATGCCGTGGGTCT 59.408 61.111 0.00 0.00 36.92 3.85
477 478 1.077501 CATGGATGCCGTGGGTCTT 60.078 57.895 0.00 0.00 36.92 3.01
478 479 1.097547 CATGGATGCCGTGGGTCTTC 61.098 60.000 0.00 0.00 36.92 2.87
479 480 1.561769 ATGGATGCCGTGGGTCTTCA 61.562 55.000 0.00 0.00 0.00 3.02
480 481 1.002624 GGATGCCGTGGGTCTTCAA 60.003 57.895 0.00 0.00 0.00 2.69
481 482 1.305930 GGATGCCGTGGGTCTTCAAC 61.306 60.000 0.00 0.00 0.00 3.18
482 483 1.635663 GATGCCGTGGGTCTTCAACG 61.636 60.000 0.00 0.00 0.00 4.10
483 484 3.047877 GCCGTGGGTCTTCAACGG 61.048 66.667 9.02 9.02 45.67 4.44
484 485 2.738480 CCGTGGGTCTTCAACGGA 59.262 61.111 7.68 0.00 45.77 4.69
485 486 1.374252 CCGTGGGTCTTCAACGGAG 60.374 63.158 7.68 0.00 45.77 4.63
486 487 2.027625 CGTGGGTCTTCAACGGAGC 61.028 63.158 0.00 0.00 0.00 4.70
487 488 1.070786 GTGGGTCTTCAACGGAGCA 59.929 57.895 0.00 0.00 33.45 4.26
488 489 0.534203 GTGGGTCTTCAACGGAGCAA 60.534 55.000 0.00 0.00 33.45 3.91
489 490 0.250295 TGGGTCTTCAACGGAGCAAG 60.250 55.000 0.00 0.00 33.45 4.01
490 491 0.034896 GGGTCTTCAACGGAGCAAGA 59.965 55.000 0.00 0.00 33.45 3.02
491 492 1.149148 GGTCTTCAACGGAGCAAGAC 58.851 55.000 9.21 9.21 43.60 3.01
492 493 1.270358 GGTCTTCAACGGAGCAAGACT 60.270 52.381 14.56 0.00 43.74 3.24
493 494 2.029290 GGTCTTCAACGGAGCAAGACTA 60.029 50.000 14.56 0.00 43.74 2.59
494 495 3.246619 GTCTTCAACGGAGCAAGACTAG 58.753 50.000 10.05 0.00 41.87 2.57
495 496 2.231478 TCTTCAACGGAGCAAGACTAGG 59.769 50.000 0.00 0.00 0.00 3.02
496 497 1.919240 TCAACGGAGCAAGACTAGGA 58.081 50.000 0.00 0.00 0.00 2.94
497 498 2.457598 TCAACGGAGCAAGACTAGGAT 58.542 47.619 0.00 0.00 0.00 3.24
498 499 2.427453 TCAACGGAGCAAGACTAGGATC 59.573 50.000 0.00 0.00 0.00 3.36
499 500 1.404843 ACGGAGCAAGACTAGGATCC 58.595 55.000 2.48 2.48 36.26 3.36
500 501 1.342076 ACGGAGCAAGACTAGGATCCA 60.342 52.381 15.82 0.00 39.53 3.41
501 502 1.339610 CGGAGCAAGACTAGGATCCAG 59.660 57.143 15.82 11.76 39.53 3.86
502 503 1.069978 GGAGCAAGACTAGGATCCAGC 59.930 57.143 15.82 6.01 39.36 4.85
503 504 1.759445 GAGCAAGACTAGGATCCAGCA 59.241 52.381 15.82 0.00 0.00 4.41
504 505 1.761784 AGCAAGACTAGGATCCAGCAG 59.238 52.381 15.82 10.35 0.00 4.24
505 506 1.809651 GCAAGACTAGGATCCAGCAGC 60.810 57.143 15.82 4.69 0.00 5.25
506 507 0.749649 AAGACTAGGATCCAGCAGCG 59.250 55.000 15.82 0.00 0.00 5.18
507 508 0.396417 AGACTAGGATCCAGCAGCGT 60.396 55.000 15.82 0.90 0.00 5.07
508 509 0.249238 GACTAGGATCCAGCAGCGTG 60.249 60.000 15.82 0.00 0.00 5.34
509 510 1.593750 CTAGGATCCAGCAGCGTGC 60.594 63.158 15.82 2.28 45.46 5.34
518 519 2.553268 GCAGCGTGCTCTTGTCAC 59.447 61.111 0.00 0.00 40.96 3.67
519 520 2.959357 GCAGCGTGCTCTTGTCACC 61.959 63.158 0.00 0.00 40.96 4.02
520 521 2.356313 AGCGTGCTCTTGTCACCG 60.356 61.111 0.00 0.00 0.00 4.94
521 522 2.355837 GCGTGCTCTTGTCACCGA 60.356 61.111 0.00 0.00 0.00 4.69
522 523 1.954146 GCGTGCTCTTGTCACCGAA 60.954 57.895 0.00 0.00 0.00 4.30
523 524 1.891060 GCGTGCTCTTGTCACCGAAG 61.891 60.000 0.00 0.00 0.00 3.79
524 525 1.862806 GTGCTCTTGTCACCGAAGC 59.137 57.895 0.00 0.00 0.00 3.86
525 526 0.880278 GTGCTCTTGTCACCGAAGCA 60.880 55.000 0.00 0.00 0.00 3.91
526 527 0.601046 TGCTCTTGTCACCGAAGCAG 60.601 55.000 0.00 0.00 0.00 4.24
527 528 0.601311 GCTCTTGTCACCGAAGCAGT 60.601 55.000 0.00 0.00 0.00 4.40
528 529 1.143305 CTCTTGTCACCGAAGCAGTG 58.857 55.000 0.00 0.00 36.54 3.66
529 530 0.880278 TCTTGTCACCGAAGCAGTGC 60.880 55.000 7.13 7.13 35.14 4.40
530 531 1.845809 CTTGTCACCGAAGCAGTGCC 61.846 60.000 12.58 0.00 35.14 5.01
531 532 3.050275 GTCACCGAAGCAGTGCCC 61.050 66.667 12.58 3.02 35.14 5.36
532 533 4.329545 TCACCGAAGCAGTGCCCC 62.330 66.667 12.58 2.61 35.14 5.80
536 537 4.680237 CGAAGCAGTGCCCCGTCA 62.680 66.667 12.58 0.00 0.00 4.35
537 538 2.743928 GAAGCAGTGCCCCGTCAG 60.744 66.667 12.58 0.00 0.00 3.51
538 539 4.335647 AAGCAGTGCCCCGTCAGG 62.336 66.667 12.58 0.00 37.24 3.86
540 541 4.329545 GCAGTGCCCCGTCAGGAA 62.330 66.667 2.85 0.00 41.02 3.36
541 542 2.046892 CAGTGCCCCGTCAGGAAG 60.047 66.667 0.00 0.00 41.02 3.46
542 543 4.021925 AGTGCCCCGTCAGGAAGC 62.022 66.667 0.00 0.00 41.02 3.86
549 550 4.473520 CGTCAGGAAGCCCGGCAT 62.474 66.667 13.15 0.00 37.58 4.40
941 968 1.002134 CCGTTGACCTCCTTGCCAT 60.002 57.895 0.00 0.00 0.00 4.40
954 981 0.332293 TTGCCATCATGCCTTCCTGA 59.668 50.000 0.00 0.00 0.00 3.86
1120 1157 4.973168 TGCTGTTGTAGGATTCTTGTTCT 58.027 39.130 0.00 0.00 0.00 3.01
1121 1158 4.997395 TGCTGTTGTAGGATTCTTGTTCTC 59.003 41.667 0.00 0.00 0.00 2.87
1185 1222 4.673968 AGGGTTCATCTCAGTACAGTGTA 58.326 43.478 0.00 0.00 0.00 2.90
2008 2095 2.687935 GACAAGAAGGTGCACCAGAAAA 59.312 45.455 36.39 0.00 38.89 2.29
2151 2241 4.623886 GCTGATATCACCAAGAACACCAGA 60.624 45.833 0.00 0.00 0.00 3.86
2239 2364 0.664761 TGTTGCTGAGCTGCTGAAAC 59.335 50.000 7.01 5.32 35.22 2.78
2355 2480 6.780198 AAGGCCTTTATATAAGGATGTGGA 57.220 37.500 13.78 0.00 39.81 4.02
2477 2602 8.257602 TGGATCACCTATGCTATTAAGTGTTA 57.742 34.615 0.00 0.00 37.04 2.41
2740 2865 0.995803 TCACCATTTCCCCATTCCGA 59.004 50.000 0.00 0.00 0.00 4.55
2744 2869 2.225267 ACCATTTCCCCATTCCGACTTT 60.225 45.455 0.00 0.00 0.00 2.66
3223 3358 2.006888 CAACCGAGTTCAAGTGTGTGT 58.993 47.619 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 2.563427 TCAGAGACTGCGCTGACG 59.437 61.111 21.92 3.13 44.43 4.35
88 89 3.031964 GCAGGCTGTTGCGCTACTG 62.032 63.158 22.01 21.45 40.82 2.74
89 90 2.743928 GCAGGCTGTTGCGCTACT 60.744 61.111 22.01 0.00 40.82 2.57
95 96 3.587923 TCAAATTATTGCAGGCTGTTGC 58.412 40.909 17.16 2.94 44.33 4.17
96 97 4.807304 GGATCAAATTATTGCAGGCTGTTG 59.193 41.667 17.16 10.59 36.45 3.33
97 98 4.467082 TGGATCAAATTATTGCAGGCTGTT 59.533 37.500 17.16 4.22 36.45 3.16
98 99 4.025360 TGGATCAAATTATTGCAGGCTGT 58.975 39.130 17.16 0.00 36.45 4.40
99 100 4.142116 TGTGGATCAAATTATTGCAGGCTG 60.142 41.667 10.94 10.94 36.45 4.85
100 101 4.025360 TGTGGATCAAATTATTGCAGGCT 58.975 39.130 0.00 0.00 36.45 4.58
101 102 4.114794 GTGTGGATCAAATTATTGCAGGC 58.885 43.478 0.00 0.00 36.45 4.85
102 103 5.327616 TGTGTGGATCAAATTATTGCAGG 57.672 39.130 0.00 0.00 36.45 4.85
103 104 6.623486 TCTTGTGTGGATCAAATTATTGCAG 58.377 36.000 0.00 0.00 36.45 4.41
104 105 6.587206 TCTTGTGTGGATCAAATTATTGCA 57.413 33.333 0.00 0.00 36.45 4.08
105 106 7.599998 AGTTTCTTGTGTGGATCAAATTATTGC 59.400 33.333 0.00 0.00 36.45 3.56
106 107 9.480053 AAGTTTCTTGTGTGGATCAAATTATTG 57.520 29.630 0.00 0.00 37.92 1.90
107 108 9.480053 CAAGTTTCTTGTGTGGATCAAATTATT 57.520 29.630 0.00 0.00 0.00 1.40
108 109 8.641541 ACAAGTTTCTTGTGTGGATCAAATTAT 58.358 29.630 13.26 0.00 0.00 1.28
109 110 8.006298 ACAAGTTTCTTGTGTGGATCAAATTA 57.994 30.769 13.26 0.00 0.00 1.40
110 111 6.877236 ACAAGTTTCTTGTGTGGATCAAATT 58.123 32.000 13.26 0.00 0.00 1.82
111 112 6.469782 ACAAGTTTCTTGTGTGGATCAAAT 57.530 33.333 13.26 0.00 0.00 2.32
112 113 5.913137 ACAAGTTTCTTGTGTGGATCAAA 57.087 34.783 13.26 0.00 0.00 2.69
113 114 7.397892 TTTACAAGTTTCTTGTGTGGATCAA 57.602 32.000 20.71 6.54 34.11 2.57
114 115 7.397892 TTTTACAAGTTTCTTGTGTGGATCA 57.602 32.000 20.71 1.35 34.11 2.92
115 116 7.973944 AGTTTTTACAAGTTTCTTGTGTGGATC 59.026 33.333 20.71 9.78 34.11 3.36
116 117 7.836842 AGTTTTTACAAGTTTCTTGTGTGGAT 58.163 30.769 20.71 4.59 34.11 3.41
117 118 7.222000 AGTTTTTACAAGTTTCTTGTGTGGA 57.778 32.000 20.71 2.88 34.11 4.02
118 119 8.973835 TTAGTTTTTACAAGTTTCTTGTGTGG 57.026 30.769 20.71 0.00 34.11 4.17
120 121 9.135843 GCTTTAGTTTTTACAAGTTTCTTGTGT 57.864 29.630 20.71 0.85 34.11 3.72
121 122 9.353999 AGCTTTAGTTTTTACAAGTTTCTTGTG 57.646 29.630 20.71 5.53 34.11 3.33
129 130 9.783256 CAGTTGTTAGCTTTAGTTTTTACAAGT 57.217 29.630 0.00 0.00 0.00 3.16
130 131 8.743099 GCAGTTGTTAGCTTTAGTTTTTACAAG 58.257 33.333 0.00 0.00 0.00 3.16
131 132 7.703197 GGCAGTTGTTAGCTTTAGTTTTTACAA 59.297 33.333 0.00 0.00 0.00 2.41
132 133 7.148052 TGGCAGTTGTTAGCTTTAGTTTTTACA 60.148 33.333 0.00 0.00 0.00 2.41
133 134 7.197703 TGGCAGTTGTTAGCTTTAGTTTTTAC 58.802 34.615 0.00 0.00 0.00 2.01
134 135 7.336161 TGGCAGTTGTTAGCTTTAGTTTTTA 57.664 32.000 0.00 0.00 0.00 1.52
135 136 6.215495 TGGCAGTTGTTAGCTTTAGTTTTT 57.785 33.333 0.00 0.00 0.00 1.94
136 137 5.845391 TGGCAGTTGTTAGCTTTAGTTTT 57.155 34.783 0.00 0.00 0.00 2.43
137 138 5.534654 TCATGGCAGTTGTTAGCTTTAGTTT 59.465 36.000 0.00 0.00 0.00 2.66
138 139 5.048713 GTCATGGCAGTTGTTAGCTTTAGTT 60.049 40.000 0.00 0.00 0.00 2.24
139 140 4.455877 GTCATGGCAGTTGTTAGCTTTAGT 59.544 41.667 0.00 0.00 0.00 2.24
140 141 4.697352 AGTCATGGCAGTTGTTAGCTTTAG 59.303 41.667 0.00 0.00 0.00 1.85
141 142 4.651778 AGTCATGGCAGTTGTTAGCTTTA 58.348 39.130 0.00 0.00 0.00 1.85
142 143 3.490348 AGTCATGGCAGTTGTTAGCTTT 58.510 40.909 0.00 0.00 0.00 3.51
143 144 3.077359 GAGTCATGGCAGTTGTTAGCTT 58.923 45.455 0.00 0.00 0.00 3.74
144 145 2.038952 TGAGTCATGGCAGTTGTTAGCT 59.961 45.455 0.00 0.00 0.00 3.32
145 146 2.426522 TGAGTCATGGCAGTTGTTAGC 58.573 47.619 0.00 0.00 0.00 3.09
146 147 5.413833 AGAAATGAGTCATGGCAGTTGTTAG 59.586 40.000 6.34 0.00 0.00 2.34
147 148 5.316167 AGAAATGAGTCATGGCAGTTGTTA 58.684 37.500 6.34 0.00 0.00 2.41
148 149 4.147321 AGAAATGAGTCATGGCAGTTGTT 58.853 39.130 6.34 0.00 0.00 2.83
149 150 3.759581 AGAAATGAGTCATGGCAGTTGT 58.240 40.909 6.34 0.00 0.00 3.32
150 151 5.163683 CCTTAGAAATGAGTCATGGCAGTTG 60.164 44.000 6.34 0.00 0.00 3.16
151 152 4.946157 CCTTAGAAATGAGTCATGGCAGTT 59.054 41.667 6.34 0.00 0.00 3.16
152 153 4.225942 TCCTTAGAAATGAGTCATGGCAGT 59.774 41.667 6.34 0.00 0.00 4.40
153 154 4.574013 GTCCTTAGAAATGAGTCATGGCAG 59.426 45.833 6.34 0.00 0.00 4.85
154 155 4.019411 TGTCCTTAGAAATGAGTCATGGCA 60.019 41.667 6.34 0.00 0.00 4.92
155 156 4.517285 TGTCCTTAGAAATGAGTCATGGC 58.483 43.478 6.34 1.84 0.00 4.40
156 157 4.574013 GCTGTCCTTAGAAATGAGTCATGG 59.426 45.833 6.34 2.40 0.00 3.66
157 158 5.181009 TGCTGTCCTTAGAAATGAGTCATG 58.819 41.667 6.34 0.00 0.00 3.07
158 159 5.426689 TGCTGTCCTTAGAAATGAGTCAT 57.573 39.130 0.00 0.00 0.00 3.06
159 160 4.890158 TGCTGTCCTTAGAAATGAGTCA 57.110 40.909 0.00 0.00 0.00 3.41
160 161 6.749923 ATTTGCTGTCCTTAGAAATGAGTC 57.250 37.500 0.00 0.00 0.00 3.36
161 162 6.071728 CCAATTTGCTGTCCTTAGAAATGAGT 60.072 38.462 0.00 0.00 0.00 3.41
162 163 6.071728 ACCAATTTGCTGTCCTTAGAAATGAG 60.072 38.462 0.00 0.00 0.00 2.90
163 164 5.774690 ACCAATTTGCTGTCCTTAGAAATGA 59.225 36.000 0.00 0.00 0.00 2.57
164 165 6.029346 ACCAATTTGCTGTCCTTAGAAATG 57.971 37.500 0.00 0.00 0.00 2.32
165 166 6.458210 CAACCAATTTGCTGTCCTTAGAAAT 58.542 36.000 0.00 0.00 0.00 2.17
166 167 5.221422 CCAACCAATTTGCTGTCCTTAGAAA 60.221 40.000 0.00 0.00 33.34 2.52
167 168 4.280677 CCAACCAATTTGCTGTCCTTAGAA 59.719 41.667 0.00 0.00 33.34 2.10
168 169 3.826157 CCAACCAATTTGCTGTCCTTAGA 59.174 43.478 0.00 0.00 33.34 2.10
169 170 3.614870 GCCAACCAATTTGCTGTCCTTAG 60.615 47.826 0.00 0.00 33.34 2.18
170 171 2.298729 GCCAACCAATTTGCTGTCCTTA 59.701 45.455 0.00 0.00 33.34 2.69
171 172 1.070601 GCCAACCAATTTGCTGTCCTT 59.929 47.619 0.00 0.00 33.34 3.36
172 173 0.681175 GCCAACCAATTTGCTGTCCT 59.319 50.000 0.00 0.00 33.34 3.85
173 174 0.392336 TGCCAACCAATTTGCTGTCC 59.608 50.000 0.00 0.00 33.34 4.02
174 175 1.606224 CCTGCCAACCAATTTGCTGTC 60.606 52.381 0.00 0.00 33.34 3.51
175 176 0.393820 CCTGCCAACCAATTTGCTGT 59.606 50.000 0.00 0.00 33.34 4.40
176 177 0.320946 CCCTGCCAACCAATTTGCTG 60.321 55.000 0.00 0.00 33.34 4.41
177 178 2.060370 CCCTGCCAACCAATTTGCT 58.940 52.632 0.00 0.00 33.34 3.91
178 179 1.672030 GCCCTGCCAACCAATTTGC 60.672 57.895 0.00 0.00 33.34 3.68
179 180 0.325602 ATGCCCTGCCAACCAATTTG 59.674 50.000 0.00 0.00 34.63 2.32
180 181 0.325602 CATGCCCTGCCAACCAATTT 59.674 50.000 0.00 0.00 0.00 1.82
181 182 0.837260 ACATGCCCTGCCAACCAATT 60.837 50.000 0.00 0.00 0.00 2.32
182 183 0.040942 TACATGCCCTGCCAACCAAT 59.959 50.000 0.00 0.00 0.00 3.16
183 184 0.040942 ATACATGCCCTGCCAACCAA 59.959 50.000 0.00 0.00 0.00 3.67
184 185 0.922626 TATACATGCCCTGCCAACCA 59.077 50.000 0.00 0.00 0.00 3.67
185 186 1.888512 CATATACATGCCCTGCCAACC 59.111 52.381 0.00 0.00 0.00 3.77
186 187 2.586425 ACATATACATGCCCTGCCAAC 58.414 47.619 0.00 0.00 35.39 3.77
187 188 4.656100 ATACATATACATGCCCTGCCAA 57.344 40.909 0.00 0.00 35.39 4.52
188 189 5.029474 TCTATACATATACATGCCCTGCCA 58.971 41.667 0.00 0.00 35.39 4.92
189 190 5.129485 AGTCTATACATATACATGCCCTGCC 59.871 44.000 0.00 0.00 35.39 4.85
190 191 6.227298 AGTCTATACATATACATGCCCTGC 57.773 41.667 0.00 0.00 35.39 4.85
191 192 6.536582 GCAAGTCTATACATATACATGCCCTG 59.463 42.308 0.00 0.00 35.39 4.45
192 193 6.352222 GGCAAGTCTATACATATACATGCCCT 60.352 42.308 16.91 0.00 42.96 5.19
193 194 5.817816 GGCAAGTCTATACATATACATGCCC 59.182 44.000 16.91 5.73 42.96 5.36
194 195 6.644347 AGGCAAGTCTATACATATACATGCC 58.356 40.000 18.76 18.76 46.07 4.40
195 196 7.551585 AGAGGCAAGTCTATACATATACATGC 58.448 38.462 0.00 6.48 35.03 4.06
196 197 9.363763 CAAGAGGCAAGTCTATACATATACATG 57.636 37.037 0.00 0.00 38.21 3.21
197 198 9.094578 ACAAGAGGCAAGTCTATACATATACAT 57.905 33.333 0.00 0.00 0.00 2.29
198 199 8.478775 ACAAGAGGCAAGTCTATACATATACA 57.521 34.615 0.00 0.00 0.00 2.29
199 200 9.765795 AAACAAGAGGCAAGTCTATACATATAC 57.234 33.333 0.00 0.00 0.00 1.47
200 201 9.764363 CAAACAAGAGGCAAGTCTATACATATA 57.236 33.333 0.00 0.00 0.00 0.86
201 202 7.227512 GCAAACAAGAGGCAAGTCTATACATAT 59.772 37.037 0.00 0.00 0.00 1.78
202 203 6.538742 GCAAACAAGAGGCAAGTCTATACATA 59.461 38.462 0.00 0.00 0.00 2.29
203 204 5.355350 GCAAACAAGAGGCAAGTCTATACAT 59.645 40.000 0.00 0.00 0.00 2.29
204 205 4.695455 GCAAACAAGAGGCAAGTCTATACA 59.305 41.667 0.00 0.00 0.00 2.29
205 206 4.938226 AGCAAACAAGAGGCAAGTCTATAC 59.062 41.667 0.00 0.00 0.00 1.47
206 207 4.937620 CAGCAAACAAGAGGCAAGTCTATA 59.062 41.667 0.00 0.00 0.00 1.31
207 208 3.755378 CAGCAAACAAGAGGCAAGTCTAT 59.245 43.478 0.00 0.00 0.00 1.98
208 209 3.141398 CAGCAAACAAGAGGCAAGTCTA 58.859 45.455 0.00 0.00 0.00 2.59
209 210 1.952296 CAGCAAACAAGAGGCAAGTCT 59.048 47.619 0.00 0.00 0.00 3.24
210 211 1.949525 TCAGCAAACAAGAGGCAAGTC 59.050 47.619 0.00 0.00 0.00 3.01
211 212 2.057137 TCAGCAAACAAGAGGCAAGT 57.943 45.000 0.00 0.00 0.00 3.16
212 213 3.427233 GCTATCAGCAAACAAGAGGCAAG 60.427 47.826 0.00 0.00 41.89 4.01
213 214 2.489329 GCTATCAGCAAACAAGAGGCAA 59.511 45.455 0.00 0.00 41.89 4.52
214 215 2.086869 GCTATCAGCAAACAAGAGGCA 58.913 47.619 0.00 0.00 41.89 4.75
215 216 2.840296 GCTATCAGCAAACAAGAGGC 57.160 50.000 0.00 0.00 41.89 4.70
226 227 3.072944 GGAGATGGACATTGCTATCAGC 58.927 50.000 0.00 0.00 42.82 4.26
227 228 4.063689 GTGGAGATGGACATTGCTATCAG 58.936 47.826 0.00 0.00 0.00 2.90
228 229 3.181451 GGTGGAGATGGACATTGCTATCA 60.181 47.826 0.00 0.00 0.00 2.15
229 230 3.181451 TGGTGGAGATGGACATTGCTATC 60.181 47.826 0.00 0.00 0.00 2.08
230 231 2.779430 TGGTGGAGATGGACATTGCTAT 59.221 45.455 0.00 0.00 0.00 2.97
231 232 2.092968 GTGGTGGAGATGGACATTGCTA 60.093 50.000 0.00 0.00 0.00 3.49
232 233 0.994247 TGGTGGAGATGGACATTGCT 59.006 50.000 0.00 0.00 0.00 3.91
233 234 1.098050 GTGGTGGAGATGGACATTGC 58.902 55.000 0.00 0.00 0.00 3.56
234 235 1.339055 ACGTGGTGGAGATGGACATTG 60.339 52.381 0.00 0.00 0.00 2.82
235 236 0.984230 ACGTGGTGGAGATGGACATT 59.016 50.000 0.00 0.00 0.00 2.71
236 237 0.984230 AACGTGGTGGAGATGGACAT 59.016 50.000 0.00 0.00 0.00 3.06
237 238 0.034756 CAACGTGGTGGAGATGGACA 59.965 55.000 0.00 0.00 0.00 4.02
238 239 0.034896 ACAACGTGGTGGAGATGGAC 59.965 55.000 0.00 0.00 0.00 4.02
239 240 0.320374 GACAACGTGGTGGAGATGGA 59.680 55.000 0.00 0.00 0.00 3.41
240 241 0.673644 GGACAACGTGGTGGAGATGG 60.674 60.000 0.00 0.00 0.00 3.51
241 242 0.321671 AGGACAACGTGGTGGAGATG 59.678 55.000 0.00 0.00 0.00 2.90
242 243 0.321671 CAGGACAACGTGGTGGAGAT 59.678 55.000 0.00 0.00 0.00 2.75
243 244 1.745890 CAGGACAACGTGGTGGAGA 59.254 57.895 0.00 0.00 0.00 3.71
244 245 1.301716 CCAGGACAACGTGGTGGAG 60.302 63.158 0.00 0.00 44.20 3.86
245 246 2.825982 CCAGGACAACGTGGTGGA 59.174 61.111 0.00 0.00 44.20 4.02
250 251 2.240493 AGAGAAACCAGGACAACGTG 57.760 50.000 0.00 0.00 0.00 4.49
251 252 2.561569 CAAGAGAAACCAGGACAACGT 58.438 47.619 0.00 0.00 0.00 3.99
252 253 1.264288 GCAAGAGAAACCAGGACAACG 59.736 52.381 0.00 0.00 0.00 4.10
253 254 2.033424 GTGCAAGAGAAACCAGGACAAC 59.967 50.000 0.00 0.00 0.00 3.32
254 255 2.297701 GTGCAAGAGAAACCAGGACAA 58.702 47.619 0.00 0.00 0.00 3.18
255 256 1.476833 GGTGCAAGAGAAACCAGGACA 60.477 52.381 0.00 0.00 33.94 4.02
256 257 1.239347 GGTGCAAGAGAAACCAGGAC 58.761 55.000 0.00 0.00 33.94 3.85
257 258 0.843309 TGGTGCAAGAGAAACCAGGA 59.157 50.000 0.00 0.00 39.05 3.86
258 259 3.419793 TGGTGCAAGAGAAACCAGG 57.580 52.632 0.00 0.00 39.05 4.45
260 261 1.679139 CACTGGTGCAAGAGAAACCA 58.321 50.000 0.00 0.00 41.66 3.67
279 280 1.639298 GGTGATGTCGGTGCTGAAGC 61.639 60.000 0.00 0.00 42.50 3.86
280 281 1.354337 CGGTGATGTCGGTGCTGAAG 61.354 60.000 0.00 0.00 0.00 3.02
281 282 1.374125 CGGTGATGTCGGTGCTGAA 60.374 57.895 0.00 0.00 0.00 3.02
282 283 1.604147 ATCGGTGATGTCGGTGCTGA 61.604 55.000 0.00 0.00 0.00 4.26
283 284 1.153568 ATCGGTGATGTCGGTGCTG 60.154 57.895 0.00 0.00 0.00 4.41
284 285 1.153568 CATCGGTGATGTCGGTGCT 60.154 57.895 0.00 0.00 35.54 4.40
285 286 3.398920 CATCGGTGATGTCGGTGC 58.601 61.111 0.00 0.00 35.54 5.01
293 294 6.345298 TGTGTATACATCAAACATCGGTGAT 58.655 36.000 9.18 0.00 34.78 3.06
294 295 5.725362 TGTGTATACATCAAACATCGGTGA 58.275 37.500 9.18 0.00 0.00 4.02
295 296 5.502382 GCTGTGTATACATCAAACATCGGTG 60.502 44.000 9.18 0.00 35.97 4.94
296 297 4.570772 GCTGTGTATACATCAAACATCGGT 59.429 41.667 9.18 0.00 35.97 4.69
297 298 4.811024 AGCTGTGTATACATCAAACATCGG 59.189 41.667 9.18 0.00 35.97 4.18
298 299 5.331830 CGAGCTGTGTATACATCAAACATCG 60.332 44.000 9.18 9.06 35.97 3.84
299 300 5.520288 ACGAGCTGTGTATACATCAAACATC 59.480 40.000 9.18 0.00 35.97 3.06
300 301 5.419542 ACGAGCTGTGTATACATCAAACAT 58.580 37.500 9.18 0.00 35.97 2.71
301 302 4.816392 ACGAGCTGTGTATACATCAAACA 58.184 39.130 9.18 0.89 35.97 2.83
302 303 4.027621 CGACGAGCTGTGTATACATCAAAC 60.028 45.833 9.18 4.87 35.97 2.93
303 304 4.102649 CGACGAGCTGTGTATACATCAAA 58.897 43.478 9.18 0.00 35.97 2.69
304 305 3.128068 ACGACGAGCTGTGTATACATCAA 59.872 43.478 9.18 0.00 35.97 2.57
305 306 2.681344 ACGACGAGCTGTGTATACATCA 59.319 45.455 9.18 8.19 35.97 3.07
306 307 3.242641 TGACGACGAGCTGTGTATACATC 60.243 47.826 9.18 1.44 35.97 3.06
307 308 2.681344 TGACGACGAGCTGTGTATACAT 59.319 45.455 9.18 0.00 35.97 2.29
308 309 2.078392 TGACGACGAGCTGTGTATACA 58.922 47.619 0.00 0.08 35.08 2.29
309 310 2.819422 TGACGACGAGCTGTGTATAC 57.181 50.000 0.00 0.00 0.00 1.47
310 311 2.745821 AGTTGACGACGAGCTGTGTATA 59.254 45.455 0.00 0.00 0.00 1.47
311 312 1.540267 AGTTGACGACGAGCTGTGTAT 59.460 47.619 0.00 0.00 0.00 2.29
312 313 0.949397 AGTTGACGACGAGCTGTGTA 59.051 50.000 0.00 0.00 0.00 2.90
313 314 0.949397 TAGTTGACGACGAGCTGTGT 59.051 50.000 0.00 0.00 0.00 3.72
314 315 1.328439 GTAGTTGACGACGAGCTGTG 58.672 55.000 0.00 0.00 0.00 3.66
315 316 0.949397 TGTAGTTGACGACGAGCTGT 59.051 50.000 0.00 0.00 0.00 4.40
316 317 2.264109 ATGTAGTTGACGACGAGCTG 57.736 50.000 0.00 0.00 0.00 4.24
317 318 2.355132 CCTATGTAGTTGACGACGAGCT 59.645 50.000 0.00 0.00 0.00 4.09
318 319 2.097142 ACCTATGTAGTTGACGACGAGC 59.903 50.000 0.00 0.00 0.00 5.03
319 320 3.126514 ACACCTATGTAGTTGACGACGAG 59.873 47.826 0.00 0.00 37.26 4.18
320 321 3.076621 ACACCTATGTAGTTGACGACGA 58.923 45.455 0.00 0.00 37.26 4.20
321 322 3.120095 TCACACCTATGTAGTTGACGACG 60.120 47.826 0.00 0.00 36.72 5.12
322 323 4.430137 TCACACCTATGTAGTTGACGAC 57.570 45.455 0.00 0.00 36.72 4.34
323 324 4.201881 CGATCACACCTATGTAGTTGACGA 60.202 45.833 0.00 0.00 36.72 4.20
324 325 4.035684 CGATCACACCTATGTAGTTGACG 58.964 47.826 0.00 0.00 36.72 4.35
325 326 4.995124 ACGATCACACCTATGTAGTTGAC 58.005 43.478 0.00 0.00 36.72 3.18
326 327 4.201881 CGACGATCACACCTATGTAGTTGA 60.202 45.833 0.00 0.00 36.72 3.18
327 328 4.035684 CGACGATCACACCTATGTAGTTG 58.964 47.826 0.00 0.00 36.72 3.16
328 329 3.943381 TCGACGATCACACCTATGTAGTT 59.057 43.478 0.00 0.00 36.72 2.24
329 330 3.311871 GTCGACGATCACACCTATGTAGT 59.688 47.826 0.00 0.00 36.72 2.73
330 331 3.311596 TGTCGACGATCACACCTATGTAG 59.688 47.826 11.62 0.00 36.72 2.74
331 332 3.272581 TGTCGACGATCACACCTATGTA 58.727 45.455 11.62 0.00 36.72 2.29
332 333 2.089201 TGTCGACGATCACACCTATGT 58.911 47.619 11.62 0.00 40.80 2.29
333 334 2.844122 TGTCGACGATCACACCTATG 57.156 50.000 11.62 0.00 0.00 2.23
334 335 3.508762 GTTTGTCGACGATCACACCTAT 58.491 45.455 11.62 0.00 0.00 2.57
335 336 2.352030 GGTTTGTCGACGATCACACCTA 60.352 50.000 19.56 0.00 33.30 3.08
336 337 1.604693 GGTTTGTCGACGATCACACCT 60.605 52.381 19.56 0.00 33.30 4.00
337 338 0.788391 GGTTTGTCGACGATCACACC 59.212 55.000 11.62 9.74 0.00 4.16
338 339 0.788391 GGGTTTGTCGACGATCACAC 59.212 55.000 11.62 2.35 0.00 3.82
339 340 0.677288 AGGGTTTGTCGACGATCACA 59.323 50.000 16.63 0.00 0.00 3.58
340 341 1.068474 CAGGGTTTGTCGACGATCAC 58.932 55.000 11.62 9.58 0.00 3.06
341 342 0.037697 CCAGGGTTTGTCGACGATCA 60.038 55.000 11.62 0.00 0.00 2.92
342 343 0.245539 TCCAGGGTTTGTCGACGATC 59.754 55.000 11.62 8.21 0.00 3.69
343 344 0.902531 ATCCAGGGTTTGTCGACGAT 59.097 50.000 11.62 1.78 0.00 3.73
344 345 0.682852 AATCCAGGGTTTGTCGACGA 59.317 50.000 11.62 6.16 0.00 4.20
345 346 0.796312 CAATCCAGGGTTTGTCGACG 59.204 55.000 11.62 0.00 0.00 5.12
346 347 0.521735 GCAATCCAGGGTTTGTCGAC 59.478 55.000 9.11 9.11 0.00 4.20
347 348 0.109532 TGCAATCCAGGGTTTGTCGA 59.890 50.000 10.04 0.00 0.00 4.20
348 349 1.176527 ATGCAATCCAGGGTTTGTCG 58.823 50.000 10.04 0.00 0.00 4.35
349 350 4.799564 TTTATGCAATCCAGGGTTTGTC 57.200 40.909 10.04 4.57 0.00 3.18
350 351 4.080975 CCATTTATGCAATCCAGGGTTTGT 60.081 41.667 10.04 0.00 0.00 2.83
351 352 4.444536 CCATTTATGCAATCCAGGGTTTG 58.555 43.478 0.00 5.02 0.00 2.93
352 353 3.118298 GCCATTTATGCAATCCAGGGTTT 60.118 43.478 0.00 0.00 0.00 3.27
353 354 2.435437 GCCATTTATGCAATCCAGGGTT 59.565 45.455 0.00 0.00 0.00 4.11
354 355 2.041701 GCCATTTATGCAATCCAGGGT 58.958 47.619 0.00 0.00 0.00 4.34
355 356 2.040939 TGCCATTTATGCAATCCAGGG 58.959 47.619 0.00 0.00 35.40 4.45
356 357 3.556213 CCATGCCATTTATGCAATCCAGG 60.556 47.826 0.00 0.00 42.92 4.45
357 358 3.322541 TCCATGCCATTTATGCAATCCAG 59.677 43.478 0.00 0.00 42.92 3.86
358 359 3.069872 GTCCATGCCATTTATGCAATCCA 59.930 43.478 0.00 0.00 42.92 3.41
359 360 3.322828 AGTCCATGCCATTTATGCAATCC 59.677 43.478 0.00 0.00 42.92 3.01
360 361 4.595762 AGTCCATGCCATTTATGCAATC 57.404 40.909 0.00 0.00 42.92 2.67
361 362 5.362105 AAAGTCCATGCCATTTATGCAAT 57.638 34.783 0.00 0.00 42.92 3.56
362 363 4.822685 AAAGTCCATGCCATTTATGCAA 57.177 36.364 0.00 0.00 42.92 4.08
363 364 4.822685 AAAAGTCCATGCCATTTATGCA 57.177 36.364 0.00 0.00 43.97 3.96
364 365 6.514947 TGATAAAAGTCCATGCCATTTATGC 58.485 36.000 7.92 0.00 0.00 3.14
365 366 9.550406 AAATGATAAAAGTCCATGCCATTTATG 57.450 29.630 0.00 0.00 33.05 1.90
366 367 9.550406 CAAATGATAAAAGTCCATGCCATTTAT 57.450 29.630 0.00 0.00 33.38 1.40
367 368 7.495279 GCAAATGATAAAAGTCCATGCCATTTA 59.505 33.333 0.00 0.00 33.38 1.40
368 369 6.316890 GCAAATGATAAAAGTCCATGCCATTT 59.683 34.615 0.00 0.00 34.51 2.32
369 370 5.818857 GCAAATGATAAAAGTCCATGCCATT 59.181 36.000 0.00 0.00 0.00 3.16
370 371 5.362263 GCAAATGATAAAAGTCCATGCCAT 58.638 37.500 0.00 0.00 0.00 4.40
371 372 4.677514 CGCAAATGATAAAAGTCCATGCCA 60.678 41.667 0.00 0.00 0.00 4.92
372 373 3.798337 CGCAAATGATAAAAGTCCATGCC 59.202 43.478 0.00 0.00 0.00 4.40
373 374 3.243643 GCGCAAATGATAAAAGTCCATGC 59.756 43.478 0.30 0.00 0.00 4.06
374 375 4.266029 GTGCGCAAATGATAAAAGTCCATG 59.734 41.667 14.00 0.00 0.00 3.66
375 376 4.423732 GTGCGCAAATGATAAAAGTCCAT 58.576 39.130 14.00 0.00 0.00 3.41
376 377 3.669290 CGTGCGCAAATGATAAAAGTCCA 60.669 43.478 14.00 0.00 0.00 4.02
377 378 2.845967 CGTGCGCAAATGATAAAAGTCC 59.154 45.455 14.00 0.00 0.00 3.85
378 379 3.742786 TCGTGCGCAAATGATAAAAGTC 58.257 40.909 14.00 0.00 0.00 3.01
379 380 3.747193 CTCGTGCGCAAATGATAAAAGT 58.253 40.909 14.00 0.00 0.00 2.66
380 381 2.527487 GCTCGTGCGCAAATGATAAAAG 59.473 45.455 14.00 0.00 0.00 2.27
381 382 2.095516 TGCTCGTGCGCAAATGATAAAA 60.096 40.909 14.00 0.00 43.34 1.52
382 383 1.466558 TGCTCGTGCGCAAATGATAAA 59.533 42.857 14.00 0.00 43.34 1.40
383 384 1.082690 TGCTCGTGCGCAAATGATAA 58.917 45.000 14.00 0.00 43.34 1.75
384 385 1.082690 TTGCTCGTGCGCAAATGATA 58.917 45.000 14.00 0.12 46.00 2.15
385 386 1.875262 TTGCTCGTGCGCAAATGAT 59.125 47.368 14.00 0.00 46.00 2.45
386 387 3.338674 TTGCTCGTGCGCAAATGA 58.661 50.000 14.00 10.10 46.00 2.57
394 395 4.107051 AAGCGGCATTGCTCGTGC 62.107 61.111 16.93 1.71 46.60 5.34
395 396 2.099062 GAAGCGGCATTGCTCGTG 59.901 61.111 16.93 4.51 46.60 4.35
396 397 3.127533 GGAAGCGGCATTGCTCGT 61.128 61.111 16.93 5.74 46.60 4.18
397 398 3.880846 GGGAAGCGGCATTGCTCG 61.881 66.667 8.82 11.35 46.60 5.03
398 399 3.880846 CGGGAAGCGGCATTGCTC 61.881 66.667 8.82 1.09 46.60 4.26
401 402 3.508840 GACCGGGAAGCGGCATTG 61.509 66.667 6.32 0.00 0.00 2.82
402 403 4.796495 GGACCGGGAAGCGGCATT 62.796 66.667 6.32 0.00 0.00 3.56
414 415 1.067776 GGTATTATCTCTGCCGGACCG 60.068 57.143 5.05 6.99 0.00 4.79
415 416 1.968493 TGGTATTATCTCTGCCGGACC 59.032 52.381 5.05 0.00 0.00 4.46
416 417 2.628657 AGTGGTATTATCTCTGCCGGAC 59.371 50.000 5.05 0.00 0.00 4.79
417 418 2.891580 GAGTGGTATTATCTCTGCCGGA 59.108 50.000 5.05 0.00 0.00 5.14
418 419 2.028930 GGAGTGGTATTATCTCTGCCGG 60.029 54.545 0.00 0.00 0.00 6.13
419 420 2.628178 TGGAGTGGTATTATCTCTGCCG 59.372 50.000 0.00 0.00 0.00 5.69
420 421 3.388024 TGTGGAGTGGTATTATCTCTGCC 59.612 47.826 0.00 0.00 0.00 4.85
421 422 4.672587 TGTGGAGTGGTATTATCTCTGC 57.327 45.455 0.00 0.00 0.00 4.26
422 423 6.017605 GCAATTGTGGAGTGGTATTATCTCTG 60.018 42.308 7.40 0.00 0.00 3.35
423 424 6.058183 GCAATTGTGGAGTGGTATTATCTCT 58.942 40.000 7.40 0.00 0.00 3.10
424 425 6.058183 AGCAATTGTGGAGTGGTATTATCTC 58.942 40.000 7.40 0.00 31.48 2.75
425 426 6.006275 AGCAATTGTGGAGTGGTATTATCT 57.994 37.500 7.40 0.00 31.48 1.98
426 427 6.095440 ACAAGCAATTGTGGAGTGGTATTATC 59.905 38.462 7.40 0.00 32.15 1.75
427 428 5.951747 ACAAGCAATTGTGGAGTGGTATTAT 59.048 36.000 7.40 0.00 32.15 1.28
428 429 5.321102 ACAAGCAATTGTGGAGTGGTATTA 58.679 37.500 7.40 0.00 32.15 0.98
429 430 4.151883 ACAAGCAATTGTGGAGTGGTATT 58.848 39.130 7.40 0.00 32.15 1.89
430 431 3.766545 ACAAGCAATTGTGGAGTGGTAT 58.233 40.909 7.40 0.00 32.15 2.73
431 432 3.222173 ACAAGCAATTGTGGAGTGGTA 57.778 42.857 7.40 0.00 32.15 3.25
432 433 2.071778 ACAAGCAATTGTGGAGTGGT 57.928 45.000 7.40 0.00 35.27 4.16
433 434 2.288395 GGAACAAGCAATTGTGGAGTGG 60.288 50.000 7.40 0.00 34.99 4.00
434 435 2.605338 CGGAACAAGCAATTGTGGAGTG 60.605 50.000 7.40 1.43 34.99 3.51
435 436 1.608590 CGGAACAAGCAATTGTGGAGT 59.391 47.619 7.40 0.00 34.99 3.85
436 437 1.879380 TCGGAACAAGCAATTGTGGAG 59.121 47.619 7.40 0.00 34.99 3.86
437 438 1.606668 GTCGGAACAAGCAATTGTGGA 59.393 47.619 7.40 0.00 34.99 4.02
438 439 1.335872 GGTCGGAACAAGCAATTGTGG 60.336 52.381 7.40 0.00 34.99 4.17
439 440 1.335872 GGGTCGGAACAAGCAATTGTG 60.336 52.381 7.40 0.66 34.99 3.33
440 441 0.958822 GGGTCGGAACAAGCAATTGT 59.041 50.000 7.40 0.00 36.59 2.71
441 442 0.958091 TGGGTCGGAACAAGCAATTG 59.042 50.000 0.00 0.00 0.00 2.32
442 443 1.545582 CATGGGTCGGAACAAGCAATT 59.454 47.619 0.00 0.00 0.00 2.32
443 444 1.176527 CATGGGTCGGAACAAGCAAT 58.823 50.000 0.00 0.00 0.00 3.56
444 445 0.893270 CCATGGGTCGGAACAAGCAA 60.893 55.000 2.85 0.00 0.00 3.91
445 446 1.303236 CCATGGGTCGGAACAAGCA 60.303 57.895 2.85 0.00 0.00 3.91
446 447 0.394352 ATCCATGGGTCGGAACAAGC 60.394 55.000 13.02 0.00 35.77 4.01
447 448 1.382522 CATCCATGGGTCGGAACAAG 58.617 55.000 13.02 0.00 35.77 3.16
448 449 0.679640 GCATCCATGGGTCGGAACAA 60.680 55.000 13.02 0.00 35.77 2.83
449 450 1.077787 GCATCCATGGGTCGGAACA 60.078 57.895 13.02 0.00 35.77 3.18
450 451 1.823899 GGCATCCATGGGTCGGAAC 60.824 63.158 13.02 0.00 35.77 3.62
451 452 2.595095 GGCATCCATGGGTCGGAA 59.405 61.111 13.02 0.00 35.77 4.30
452 453 3.860605 CGGCATCCATGGGTCGGA 61.861 66.667 13.02 0.00 36.84 4.55
453 454 4.175337 ACGGCATCCATGGGTCGG 62.175 66.667 17.54 10.98 0.00 4.79
454 455 2.896854 CACGGCATCCATGGGTCG 60.897 66.667 13.02 12.83 0.00 4.79
455 456 2.516930 CCACGGCATCCATGGGTC 60.517 66.667 13.02 0.00 0.00 4.46
456 457 4.127744 CCCACGGCATCCATGGGT 62.128 66.667 13.02 0.00 46.99 4.51
458 459 2.516930 GACCCACGGCATCCATGG 60.517 66.667 4.97 4.97 0.00 3.66
459 460 1.077501 AAGACCCACGGCATCCATG 60.078 57.895 0.00 0.00 0.00 3.66
460 461 1.224592 GAAGACCCACGGCATCCAT 59.775 57.895 0.00 0.00 0.00 3.41
461 462 1.773856 TTGAAGACCCACGGCATCCA 61.774 55.000 0.00 0.00 0.00 3.41
462 463 1.002624 TTGAAGACCCACGGCATCC 60.003 57.895 0.00 0.00 0.00 3.51
463 464 1.635663 CGTTGAAGACCCACGGCATC 61.636 60.000 0.00 0.00 0.00 3.91
464 465 1.671054 CGTTGAAGACCCACGGCAT 60.671 57.895 0.00 0.00 0.00 4.40
465 466 2.280524 CGTTGAAGACCCACGGCA 60.281 61.111 0.00 0.00 0.00 5.69
466 467 3.047877 CCGTTGAAGACCCACGGC 61.048 66.667 0.00 0.00 37.16 5.68
467 468 1.374252 CTCCGTTGAAGACCCACGG 60.374 63.158 3.53 3.53 44.43 4.94
468 469 2.027625 GCTCCGTTGAAGACCCACG 61.028 63.158 0.00 0.00 0.00 4.94
469 470 0.534203 TTGCTCCGTTGAAGACCCAC 60.534 55.000 0.00 0.00 0.00 4.61
470 471 0.250295 CTTGCTCCGTTGAAGACCCA 60.250 55.000 0.00 0.00 0.00 4.51
471 472 0.034896 TCTTGCTCCGTTGAAGACCC 59.965 55.000 0.00 0.00 0.00 4.46
472 473 1.149148 GTCTTGCTCCGTTGAAGACC 58.851 55.000 0.00 0.00 39.72 3.85
473 474 2.156343 AGTCTTGCTCCGTTGAAGAC 57.844 50.000 0.00 0.00 43.95 3.01
474 475 2.231478 CCTAGTCTTGCTCCGTTGAAGA 59.769 50.000 0.00 0.00 0.00 2.87
475 476 2.231478 TCCTAGTCTTGCTCCGTTGAAG 59.769 50.000 0.00 0.00 0.00 3.02
476 477 2.244695 TCCTAGTCTTGCTCCGTTGAA 58.755 47.619 0.00 0.00 0.00 2.69
477 478 1.919240 TCCTAGTCTTGCTCCGTTGA 58.081 50.000 0.00 0.00 0.00 3.18
478 479 2.482142 GGATCCTAGTCTTGCTCCGTTG 60.482 54.545 3.84 0.00 0.00 4.10
479 480 1.757699 GGATCCTAGTCTTGCTCCGTT 59.242 52.381 3.84 0.00 0.00 4.44
480 481 1.342076 TGGATCCTAGTCTTGCTCCGT 60.342 52.381 14.23 0.00 0.00 4.69
481 482 1.339610 CTGGATCCTAGTCTTGCTCCG 59.660 57.143 14.23 0.00 0.00 4.63
482 483 1.069978 GCTGGATCCTAGTCTTGCTCC 59.930 57.143 14.23 0.00 0.00 4.70
483 484 1.759445 TGCTGGATCCTAGTCTTGCTC 59.241 52.381 14.23 0.00 0.00 4.26
484 485 1.761784 CTGCTGGATCCTAGTCTTGCT 59.238 52.381 14.23 0.00 0.00 3.91
485 486 1.809651 GCTGCTGGATCCTAGTCTTGC 60.810 57.143 14.23 4.75 0.00 4.01
486 487 1.537776 CGCTGCTGGATCCTAGTCTTG 60.538 57.143 14.23 0.00 0.00 3.02
487 488 0.749649 CGCTGCTGGATCCTAGTCTT 59.250 55.000 14.23 0.00 0.00 3.01
488 489 0.396417 ACGCTGCTGGATCCTAGTCT 60.396 55.000 14.23 0.00 0.00 3.24
489 490 0.249238 CACGCTGCTGGATCCTAGTC 60.249 60.000 14.23 6.10 0.00 2.59
490 491 1.819229 CACGCTGCTGGATCCTAGT 59.181 57.895 14.23 1.17 0.00 2.57
491 492 1.593750 GCACGCTGCTGGATCCTAG 60.594 63.158 14.23 9.87 40.96 3.02
492 493 2.501128 GCACGCTGCTGGATCCTA 59.499 61.111 14.23 0.00 40.96 2.94
501 502 2.553268 GTGACAAGAGCACGCTGC 59.447 61.111 0.00 2.28 45.46 5.25
502 503 2.661566 CGGTGACAAGAGCACGCTG 61.662 63.158 0.00 0.00 37.13 5.18
503 504 2.356313 CGGTGACAAGAGCACGCT 60.356 61.111 0.00 0.00 37.13 5.07
504 505 1.891060 CTTCGGTGACAAGAGCACGC 61.891 60.000 0.00 0.00 37.13 5.34
505 506 1.891060 GCTTCGGTGACAAGAGCACG 61.891 60.000 0.00 0.00 37.13 5.34
506 507 0.880278 TGCTTCGGTGACAAGAGCAC 60.880 55.000 2.59 0.00 35.56 4.40
507 508 0.601046 CTGCTTCGGTGACAAGAGCA 60.601 55.000 6.00 6.00 0.00 4.26
508 509 0.601311 ACTGCTTCGGTGACAAGAGC 60.601 55.000 0.00 0.00 0.00 4.09
509 510 1.143305 CACTGCTTCGGTGACAAGAG 58.857 55.000 0.00 0.00 42.79 2.85
510 511 0.880278 GCACTGCTTCGGTGACAAGA 60.880 55.000 9.74 0.00 42.79 3.02
511 512 1.571460 GCACTGCTTCGGTGACAAG 59.429 57.895 9.74 0.00 42.79 3.16
512 513 3.731136 GCACTGCTTCGGTGACAA 58.269 55.556 9.74 0.00 42.79 3.18
515 516 4.329545 GGGGCACTGCTTCGGTGA 62.330 66.667 9.74 0.00 42.79 4.02
519 520 4.680237 TGACGGGGCACTGCTTCG 62.680 66.667 0.00 12.58 0.00 3.79
520 521 2.743928 CTGACGGGGCACTGCTTC 60.744 66.667 0.00 0.00 0.00 3.86
521 522 4.335647 CCTGACGGGGCACTGCTT 62.336 66.667 0.00 0.00 0.00 3.91
523 524 4.329545 TTCCTGACGGGGCACTGC 62.330 66.667 0.00 0.00 35.33 4.40
524 525 2.046892 CTTCCTGACGGGGCACTG 60.047 66.667 0.00 0.00 35.33 3.66
525 526 4.021925 GCTTCCTGACGGGGCACT 62.022 66.667 0.00 0.00 35.33 4.40
532 533 2.383245 ATATGCCGGGCTTCCTGACG 62.383 60.000 21.46 0.00 29.82 4.35
533 534 0.179018 AATATGCCGGGCTTCCTGAC 60.179 55.000 21.46 0.00 29.82 3.51
534 535 0.179020 CAATATGCCGGGCTTCCTGA 60.179 55.000 21.46 0.00 29.82 3.86
535 536 1.174712 CCAATATGCCGGGCTTCCTG 61.175 60.000 21.46 13.60 0.00 3.86
536 537 1.151450 CCAATATGCCGGGCTTCCT 59.849 57.895 21.46 4.96 0.00 3.36
537 538 0.890996 CTCCAATATGCCGGGCTTCC 60.891 60.000 21.46 0.00 0.00 3.46
538 539 0.179018 ACTCCAATATGCCGGGCTTC 60.179 55.000 21.46 0.00 0.00 3.86
539 540 1.136828 TACTCCAATATGCCGGGCTT 58.863 50.000 21.46 16.72 0.00 4.35
540 541 1.136828 TTACTCCAATATGCCGGGCT 58.863 50.000 21.46 8.36 0.00 5.19
541 542 1.975660 TTTACTCCAATATGCCGGGC 58.024 50.000 13.32 13.32 0.00 6.13
542 543 3.689649 GCTATTTACTCCAATATGCCGGG 59.310 47.826 2.18 0.00 0.00 5.73
543 544 4.323417 TGCTATTTACTCCAATATGCCGG 58.677 43.478 0.00 0.00 0.00 6.13
544 545 7.609760 TTATGCTATTTACTCCAATATGCCG 57.390 36.000 0.00 0.00 0.00 5.69
545 546 9.626045 GTTTTATGCTATTTACTCCAATATGCC 57.374 33.333 0.00 0.00 0.00 4.40
941 968 1.808411 GTCGTTTCAGGAAGGCATGA 58.192 50.000 0.00 0.00 32.19 3.07
954 981 2.667724 CGAGCTAGTTTCCTCGTCGTTT 60.668 50.000 8.75 0.00 44.25 3.60
1120 1157 3.523157 TCAAATCCCAGCCTCACTATTGA 59.477 43.478 0.00 0.00 0.00 2.57
1121 1158 3.889815 TCAAATCCCAGCCTCACTATTG 58.110 45.455 0.00 0.00 0.00 1.90
1137 1174 8.757982 AGCTTACATCAATCCTACAATCAAAT 57.242 30.769 0.00 0.00 0.00 2.32
1185 1222 2.597455 CCCAACTCAACATGAACCCTT 58.403 47.619 0.00 0.00 0.00 3.95
1325 1365 2.951642 CTCAAGTTGGCCACAGAAAAGA 59.048 45.455 3.88 0.00 0.00 2.52
2008 2095 3.716872 TCAAGTTCTTCCTCCTCCACTTT 59.283 43.478 0.00 0.00 0.00 2.66
2125 2215 4.333926 GGTGTTCTTGGTGATATCAGCTTC 59.666 45.833 29.49 17.31 44.12 3.86
2138 2228 1.986882 AGCCTTTCTGGTGTTCTTGG 58.013 50.000 0.00 0.00 38.35 3.61
2151 2241 5.574188 ACTTGAACATCCTTCATAGCCTTT 58.426 37.500 0.00 0.00 0.00 3.11
2239 2364 0.034186 TCCTTGCTGCCATACCCTTG 60.034 55.000 0.00 0.00 0.00 3.61
2382 2507 3.085533 TCACATTCCCCCAAAATGTACG 58.914 45.455 1.52 0.00 43.62 3.67
2740 2865 7.288810 TCTGGAAATTGCAGTTTATCAAAGT 57.711 32.000 14.00 0.00 37.12 2.66
2744 2869 9.330063 CTAGTATCTGGAAATTGCAGTTTATCA 57.670 33.333 14.00 8.28 37.12 2.15
2822 2947 3.725895 CGACGAGTAATTTCGAACCGAGA 60.726 47.826 6.54 0.00 43.03 4.04
3131 3264 7.202093 CCATCCTAATTACTATCAGGAACACCA 60.202 40.741 0.00 0.00 40.48 4.17
3170 3305 2.426522 TCCTCGTTGGCAAGAATCTTG 58.573 47.619 18.02 18.02 35.26 3.02
3223 3358 1.378911 GCATGGGCACAGATGGTCA 60.379 57.895 0.00 0.00 40.72 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.