Multiple sequence alignment - TraesCS5A01G518900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G518900 chr5A 100.000 3467 0 0 1 3467 680748070 680751536 0.000000e+00 6403.0
1 TraesCS5A01G518900 chr5A 90.591 1828 156 10 798 2619 680697056 680695239 0.000000e+00 2409.0
2 TraesCS5A01G518900 chr5A 94.118 272 14 2 2860 3129 672373938 672374209 2.490000e-111 412.0
3 TraesCS5A01G518900 chr5A 85.635 181 20 4 432 608 680697454 680697276 5.910000e-43 185.0
4 TraesCS5A01G518900 chr5A 77.744 328 47 16 728 1035 680663132 680662811 9.890000e-41 178.0
5 TraesCS5A01G518900 chr5A 94.118 85 4 1 341 424 680697603 680697519 1.010000e-25 128.0
6 TraesCS5A01G518900 chr4D 90.781 1909 160 10 728 2629 499713199 499711300 0.000000e+00 2536.0
7 TraesCS5A01G518900 chr4D 92.134 1767 131 4 861 2625 499694324 499696084 0.000000e+00 2486.0
8 TraesCS5A01G518900 chr4D 83.592 2127 242 46 423 2483 499702474 499700389 0.000000e+00 1895.0
9 TraesCS5A01G518900 chr4D 96.169 522 19 1 1723 2244 499830833 499831353 0.000000e+00 852.0
10 TraesCS5A01G518900 chr4D 92.857 378 26 1 2222 2598 499833646 499834023 6.540000e-152 547.0
11 TraesCS5A01G518900 chr4D 88.442 398 43 3 1923 2319 499844655 499845050 8.710000e-131 477.0
12 TraesCS5A01G518900 chr4D 88.809 277 18 8 3126 3392 101440252 101440525 9.280000e-86 327.0
13 TraesCS5A01G518900 chr4D 94.301 193 5 1 8 194 499788891 499789083 1.220000e-74 291.0
14 TraesCS5A01G518900 chr4D 86.641 262 18 3 1466 1727 499794184 499794428 1.230000e-69 274.0
15 TraesCS5A01G518900 chr4D 94.118 85 4 1 341 424 499713816 499713732 1.010000e-25 128.0
16 TraesCS5A01G518900 chr4D 88.750 80 9 0 238 317 499702761 499702682 7.920000e-17 99.0
17 TraesCS5A01G518900 chr4D 92.424 66 5 0 2624 2689 61162714 61162779 1.020000e-15 95.3
18 TraesCS5A01G518900 chr4D 97.619 42 1 0 2692 2733 499834040 499834081 4.800000e-09 73.1
19 TraesCS5A01G518900 chr4D 97.059 34 1 0 2696 2729 499696088 499696121 1.340000e-04 58.4
20 TraesCS5A01G518900 chr4B 89.138 1740 157 8 861 2590 642750862 642749145 0.000000e+00 2137.0
21 TraesCS5A01G518900 chr4B 88.225 1792 183 15 702 2477 642963472 642965251 0.000000e+00 2115.0
22 TraesCS5A01G518900 chr4B 92.528 977 67 4 728 1699 642781085 642780110 0.000000e+00 1395.0
23 TraesCS5A01G518900 chr4B 88.126 918 104 3 1684 2600 642779700 642778787 0.000000e+00 1086.0
24 TraesCS5A01G518900 chr4B 87.981 416 28 10 279 673 642963067 642963481 4.050000e-129 472.0
25 TraesCS5A01G518900 chr4B 85.714 196 15 11 423 605 642751686 642751491 9.820000e-46 195.0
26 TraesCS5A01G518900 chr4B 86.982 169 17 3 238 401 642751926 642751758 5.910000e-43 185.0
27 TraesCS5A01G518900 chr4B 78.893 289 28 25 341 608 642781480 642781204 7.700000e-37 165.0
28 TraesCS5A01G518900 chr4B 96.629 89 3 0 8 96 642962096 642962184 7.750000e-32 148.0
29 TraesCS5A01G518900 chr4B 90.741 108 9 1 787 893 486974430 486974537 3.610000e-30 143.0
30 TraesCS5A01G518900 chr4B 95.294 85 4 0 2491 2575 642965906 642965990 6.040000e-28 135.0
31 TraesCS5A01G518900 chr4B 94.382 89 1 1 861 945 486974537 486974625 2.170000e-27 134.0
32 TraesCS5A01G518900 chr4B 91.667 60 5 0 420 479 486974308 486974367 2.220000e-12 84.2
33 TraesCS5A01G518900 chr4B 95.000 40 2 0 2694 2733 642966009 642966048 2.890000e-06 63.9
34 TraesCS5A01G518900 chr6A 95.149 268 13 0 2865 3132 614646763 614646496 1.150000e-114 424.0
35 TraesCS5A01G518900 chr6A 95.057 263 13 0 2867 3129 1972101 1971839 6.920000e-112 414.0
36 TraesCS5A01G518900 chr6A 85.938 64 8 1 3396 3458 585795321 585795258 2.230000e-07 67.6
37 TraesCS5A01G518900 chr6A 84.375 64 10 0 3395 3458 559487959 559487896 2.890000e-06 63.9
38 TraesCS5A01G518900 chr6A 100.000 28 0 0 2667 2694 1660981 1660954 6.000000e-03 52.8
39 TraesCS5A01G518900 chr7A 95.437 263 12 0 2867 3129 730826982 730827244 1.490000e-113 420.0
40 TraesCS5A01G518900 chr7A 94.485 272 13 2 2861 3131 75247459 75247189 5.350000e-113 418.0
41 TraesCS5A01G518900 chr7A 95.019 261 13 0 2867 3127 701624433 701624693 8.960000e-111 411.0
42 TraesCS5A01G518900 chr7A 94.361 266 13 2 2864 3128 24406405 24406669 1.160000e-109 407.0
43 TraesCS5A01G518900 chr7A 90.647 278 15 5 3125 3392 10020944 10021220 3.290000e-95 359.0
44 TraesCS5A01G518900 chr7A 90.000 70 7 0 2624 2693 125260846 125260915 1.330000e-14 91.6
45 TraesCS5A01G518900 chr7A 84.375 64 10 0 3395 3458 10021217 10021154 2.890000e-06 63.9
46 TraesCS5A01G518900 chr3A 95.437 263 12 0 2867 3129 399898436 399898174 1.490000e-113 420.0
47 TraesCS5A01G518900 chr3A 86.851 289 25 6 3126 3402 658982938 658982651 9.340000e-81 311.0
48 TraesCS5A01G518900 chr1A 93.796 274 14 3 2860 3131 538889843 538889571 3.220000e-110 409.0
49 TraesCS5A01G518900 chr1A 91.304 46 4 0 2623 2668 9795652 9795607 2.890000e-06 63.9
50 TraesCS5A01G518900 chr1A 88.235 51 5 1 2619 2668 128823555 128823605 3.740000e-05 60.2
51 TraesCS5A01G518900 chr5D 89.085 284 17 8 3125 3395 501436506 501436788 1.190000e-89 340.0
52 TraesCS5A01G518900 chr5D 92.742 124 6 2 2748 2870 501436389 501436510 3.560000e-40 176.0
53 TraesCS5A01G518900 chr5D 91.667 72 4 2 2624 2694 74430274 74430204 7.920000e-17 99.0
54 TraesCS5A01G518900 chr5D 84.375 64 10 0 3395 3458 509838171 509838108 2.890000e-06 63.9
55 TraesCS5A01G518900 chr3D 88.732 284 18 9 3125 3395 83940974 83941256 5.540000e-88 335.0
56 TraesCS5A01G518900 chr3D 94.262 122 7 0 2749 2870 519880132 519880011 1.640000e-43 187.0
57 TraesCS5A01G518900 chr7D 88.571 280 25 5 3126 3401 161390278 161390002 1.990000e-87 333.0
58 TraesCS5A01G518900 chr7D 93.939 66 4 0 2623 2688 614653705 614653770 2.200000e-17 100.0
59 TraesCS5A01G518900 chr7D 85.938 64 9 0 3395 3458 161390014 161390077 6.210000e-08 69.4
60 TraesCS5A01G518900 chr7D 81.690 71 12 1 3396 3465 599800020 599799950 1.340000e-04 58.4
61 TraesCS5A01G518900 chr6D 88.732 284 17 9 3125 3395 457095686 457095967 1.990000e-87 333.0
62 TraesCS5A01G518900 chr6D 91.129 124 11 0 2747 2870 457095567 457095690 5.950000e-38 169.0
63 TraesCS5A01G518900 chr6D 91.304 69 6 0 2621 2689 462210652 462210720 1.020000e-15 95.3
64 TraesCS5A01G518900 chr6D 85.938 64 8 1 3396 3458 437410082 437410019 2.230000e-07 67.6
65 TraesCS5A01G518900 chr6B 87.719 285 17 10 3126 3394 48550597 48550315 2.010000e-82 316.0
66 TraesCS5A01G518900 chr6B 88.571 70 8 0 2624 2693 22721274 22721343 6.170000e-13 86.1
67 TraesCS5A01G518900 chr6B 84.615 65 9 1 3395 3458 662166453 662166389 2.890000e-06 63.9
68 TraesCS5A01G518900 chr6B 91.304 46 2 2 2624 2668 287602238 287602194 1.040000e-05 62.1
69 TraesCS5A01G518900 chr2A 87.544 281 20 9 3125 3392 710649950 710650228 9.340000e-81 311.0
70 TraesCS5A01G518900 chr5B 95.041 121 5 1 2750 2870 372162020 372162139 4.570000e-44 189.0
71 TraesCS5A01G518900 chr5B 88.235 68 7 1 2614 2681 421191137 421191071 2.870000e-11 80.5
72 TraesCS5A01G518900 chr4A 92.913 127 5 3 2745 2870 662202680 662202803 7.640000e-42 182.0
73 TraesCS5A01G518900 chr3B 93.388 121 6 2 2751 2870 9426103 9426222 9.890000e-41 178.0
74 TraesCS5A01G518900 chr3B 94.444 72 4 0 2623 2694 520447967 520448038 1.020000e-20 111.0
75 TraesCS5A01G518900 chr3B 91.549 71 6 0 2623 2693 796309914 796309844 7.920000e-17 99.0
76 TraesCS5A01G518900 chrUn 87.500 64 8 0 3395 3458 294376808 294376745 1.330000e-09 75.0
77 TraesCS5A01G518900 chr2B 96.875 32 0 1 2667 2698 2964488 2964458 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G518900 chr5A 680748070 680751536 3466 False 6403.000000 6403 100.000000 1 3467 1 chr5A.!!$F2 3466
1 TraesCS5A01G518900 chr5A 680695239 680697603 2364 True 907.333333 2409 90.114667 341 2619 3 chr5A.!!$R2 2278
2 TraesCS5A01G518900 chr4D 499711300 499713816 2516 True 1332.000000 2536 92.449500 341 2629 2 chr4D.!!$R2 2288
3 TraesCS5A01G518900 chr4D 499694324 499696121 1797 False 1272.200000 2486 94.596500 861 2729 2 chr4D.!!$F6 1868
4 TraesCS5A01G518900 chr4D 499700389 499702761 2372 True 997.000000 1895 86.171000 238 2483 2 chr4D.!!$R1 2245
5 TraesCS5A01G518900 chr4D 499830833 499834081 3248 False 490.700000 852 95.548333 1723 2733 3 chr4D.!!$F7 1010
6 TraesCS5A01G518900 chr4B 642778787 642781480 2693 True 882.000000 1395 86.515667 341 2600 3 chr4B.!!$R2 2259
7 TraesCS5A01G518900 chr4B 642749145 642751926 2781 True 839.000000 2137 87.278000 238 2590 3 chr4B.!!$R1 2352
8 TraesCS5A01G518900 chr4B 642962096 642966048 3952 False 586.780000 2115 92.625800 8 2733 5 chr4B.!!$F2 2725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 249 0.537188 GGCAGCAGACTAGCAGGTAA 59.463 55.0 0.00 0.0 36.85 2.85 F
1605 3199 0.037590 TTGGTCCGGAGAATGTTGGG 59.962 55.0 3.06 0.0 0.00 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 3771 1.269988 ACGATGATCAGCAATCTCCCG 60.270 52.381 12.15 0.0 35.24 5.14 R
2755 7742 0.033894 ACACCCAGGAACCAAACGTT 60.034 50.000 0.00 0.0 37.41 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.202676 GCCTCAAGAGCCGAGTCG 60.203 66.667 5.29 5.29 0.00 4.18
48 49 3.041627 AAGAGCCGAGTCGACGCTC 62.042 63.158 26.77 26.77 37.02 5.03
87 88 2.420372 GGTTGCTTTCGATTTCTCTCCC 59.580 50.000 0.00 0.00 0.00 4.30
96 97 3.119101 TCGATTTCTCTCCCTTCTTTCCG 60.119 47.826 0.00 0.00 0.00 4.30
98 99 4.442192 CGATTTCTCTCCCTTCTTTCCGAT 60.442 45.833 0.00 0.00 0.00 4.18
100 101 4.473477 TTCTCTCCCTTCTTTCCGATTC 57.527 45.455 0.00 0.00 0.00 2.52
101 102 3.441101 TCTCTCCCTTCTTTCCGATTCA 58.559 45.455 0.00 0.00 0.00 2.57
105 135 6.156256 TCTCTCCCTTCTTTCCGATTCATTTA 59.844 38.462 0.00 0.00 0.00 1.40
109 139 7.599171 TCCCTTCTTTCCGATTCATTTAAAAC 58.401 34.615 0.00 0.00 0.00 2.43
110 140 6.811665 CCCTTCTTTCCGATTCATTTAAAACC 59.188 38.462 0.00 0.00 0.00 3.27
122 152 9.087424 GATTCATTTAAAACCCATTAGCTGAAC 57.913 33.333 0.00 0.00 0.00 3.18
129 159 1.474077 CCCATTAGCTGAACAAGTGGC 59.526 52.381 0.00 0.00 0.00 5.01
142 172 2.625790 ACAAGTGGCTTGCGGATTAAAA 59.374 40.909 8.59 0.00 44.43 1.52
145 175 3.848726 AGTGGCTTGCGGATTAAAATTG 58.151 40.909 0.00 0.00 0.00 2.32
146 176 3.509575 AGTGGCTTGCGGATTAAAATTGA 59.490 39.130 0.00 0.00 0.00 2.57
147 177 4.021544 AGTGGCTTGCGGATTAAAATTGAA 60.022 37.500 0.00 0.00 0.00 2.69
149 179 4.219507 TGGCTTGCGGATTAAAATTGAAGA 59.780 37.500 0.00 0.00 0.00 2.87
150 180 5.105392 TGGCTTGCGGATTAAAATTGAAGAT 60.105 36.000 0.00 0.00 0.00 2.40
151 181 5.812127 GGCTTGCGGATTAAAATTGAAGATT 59.188 36.000 0.00 0.00 0.00 2.40
152 182 6.237915 GGCTTGCGGATTAAAATTGAAGATTG 60.238 38.462 0.00 0.00 0.00 2.67
153 183 6.645700 TTGCGGATTAAAATTGAAGATTGC 57.354 33.333 0.00 0.00 0.00 3.56
154 184 5.964758 TGCGGATTAAAATTGAAGATTGCT 58.035 33.333 0.00 0.00 0.00 3.91
155 185 5.806502 TGCGGATTAAAATTGAAGATTGCTG 59.193 36.000 0.00 0.00 0.00 4.41
156 186 5.232838 GCGGATTAAAATTGAAGATTGCTGG 59.767 40.000 0.00 0.00 0.00 4.85
157 187 6.563422 CGGATTAAAATTGAAGATTGCTGGA 58.437 36.000 0.00 0.00 0.00 3.86
158 188 7.205297 CGGATTAAAATTGAAGATTGCTGGAT 58.795 34.615 0.00 0.00 0.00 3.41
159 189 7.168637 CGGATTAAAATTGAAGATTGCTGGATG 59.831 37.037 0.00 0.00 0.00 3.51
160 190 8.199449 GGATTAAAATTGAAGATTGCTGGATGA 58.801 33.333 0.00 0.00 0.00 2.92
161 191 9.760077 GATTAAAATTGAAGATTGCTGGATGAT 57.240 29.630 0.00 0.00 0.00 2.45
163 193 9.947433 TTAAAATTGAAGATTGCTGGATGATTT 57.053 25.926 0.00 0.00 0.00 2.17
164 194 8.488651 AAAATTGAAGATTGCTGGATGATTTC 57.511 30.769 0.00 0.00 0.00 2.17
165 195 6.785337 ATTGAAGATTGCTGGATGATTTCA 57.215 33.333 0.00 0.00 0.00 2.69
166 196 6.593268 TTGAAGATTGCTGGATGATTTCAA 57.407 33.333 0.00 0.00 32.68 2.69
167 197 6.785337 TGAAGATTGCTGGATGATTTCAAT 57.215 33.333 0.00 0.00 0.00 2.57
168 198 6.802608 TGAAGATTGCTGGATGATTTCAATC 58.197 36.000 0.00 0.00 41.77 2.67
216 246 0.755079 TATGGCAGCAGACTAGCAGG 59.245 55.000 0.00 0.00 36.85 4.85
217 247 1.270414 ATGGCAGCAGACTAGCAGGT 61.270 55.000 0.00 0.00 36.85 4.00
218 248 0.614697 TGGCAGCAGACTAGCAGGTA 60.615 55.000 0.00 0.00 36.85 3.08
219 249 0.537188 GGCAGCAGACTAGCAGGTAA 59.463 55.000 0.00 0.00 36.85 2.85
220 250 1.139853 GGCAGCAGACTAGCAGGTAAT 59.860 52.381 0.00 0.00 36.85 1.89
250 1008 8.451908 AGCAACTTTGAGAACTAAATGTAAGT 57.548 30.769 0.00 0.00 0.00 2.24
385 1188 9.657121 CAAAGAAATTTCTGTAGACTGAAACTC 57.343 33.333 21.15 13.64 43.29 3.01
387 1190 8.600449 AGAAATTTCTGTAGACTGAAACTCTG 57.400 34.615 19.86 0.00 43.29 3.35
430 1456 3.932089 GCAAGTCTCTCCTTGATTCAGAC 59.068 47.826 5.17 0.00 43.65 3.51
488 1526 5.005740 TCCTCATTCAAGTCAGTTTGATGG 58.994 41.667 0.00 0.00 36.97 3.51
502 1540 7.699812 GTCAGTTTGATGGAGAGAAAAATATGC 59.300 37.037 0.00 0.00 0.00 3.14
503 1541 7.394077 TCAGTTTGATGGAGAGAAAAATATGCA 59.606 33.333 0.00 0.00 0.00 3.96
504 1542 8.195436 CAGTTTGATGGAGAGAAAAATATGCAT 58.805 33.333 3.79 3.79 0.00 3.96
510 1548 7.649533 TGGAGAGAAAAATATGCATTGATGT 57.350 32.000 3.54 0.00 0.00 3.06
517 1555 6.578020 AAAATATGCATTGATGTTTCAGCG 57.422 33.333 3.54 0.00 32.27 5.18
524 1562 3.624326 TTGATGTTTCAGCGACAAAGG 57.376 42.857 0.00 0.00 32.27 3.11
529 1567 1.172180 TTTCAGCGACAAAGGCCCAG 61.172 55.000 0.00 0.00 0.00 4.45
623 1711 1.376037 GGTTCTCAGCCAGGTTCGG 60.376 63.158 0.00 0.00 0.00 4.30
642 1730 7.124448 AGGTTCGGTTGATAGAGAAAGTTAGAT 59.876 37.037 0.00 0.00 0.00 1.98
644 1732 9.798994 GTTCGGTTGATAGAGAAAGTTAGATAA 57.201 33.333 0.00 0.00 0.00 1.75
674 2087 0.804364 TGATGGCTCGTCAACAATGC 59.196 50.000 0.00 0.00 0.00 3.56
677 2090 2.480555 GCTCGTCAACAATGCCCG 59.519 61.111 0.00 0.00 0.00 6.13
709 2123 3.689649 GGTGTTGTACCTGGCATTAAGAG 59.310 47.826 0.00 0.00 46.51 2.85
954 2516 2.213499 ACTGTTCAACTTCCAAGCTCG 58.787 47.619 0.00 0.00 0.00 5.03
981 2543 6.152661 TGTTCATTCATTCCCAAGGATACAAC 59.847 38.462 0.00 0.00 41.41 3.32
1020 2599 5.114081 CCAATGGAGATTTTCATTTCTGCC 58.886 41.667 0.00 0.00 31.95 4.85
1035 2614 1.425066 TCTGCCTTGATGGGTGAACTT 59.575 47.619 0.00 0.00 36.00 2.66
1255 2834 0.524862 CACCTTCAGATGCCAAGCAC 59.475 55.000 0.00 0.00 43.04 4.40
1257 2836 1.272313 ACCTTCAGATGCCAAGCACAT 60.272 47.619 0.00 0.00 43.04 3.21
1299 2878 1.271597 GCTGTGAGTCAATCTGGGGTT 60.272 52.381 0.00 0.00 0.00 4.11
1339 2918 3.394836 AACGCCTCTGCCTCTCCC 61.395 66.667 0.00 0.00 0.00 4.30
1360 2939 2.279659 CGCAGCAACAACAAAAGAACAG 59.720 45.455 0.00 0.00 0.00 3.16
1362 2941 2.279659 CAGCAACAACAAAAGAACAGCG 59.720 45.455 0.00 0.00 0.00 5.18
1454 3033 0.530650 ACAACATATCCTCGCCTGCG 60.531 55.000 4.92 4.92 41.35 5.18
1469 3048 0.458543 CTGCGTCGTCAGCCTTACAT 60.459 55.000 4.20 0.00 0.00 2.29
1543 3122 1.897560 AGTTACCAACTTCCTGCTGC 58.102 50.000 0.00 0.00 39.04 5.25
1571 3165 6.017109 ACACAATCTTGTACTTGTAGCTTTGG 60.017 38.462 0.00 0.00 39.91 3.28
1605 3199 0.037590 TTGGTCCGGAGAATGTTGGG 59.962 55.000 3.06 0.00 0.00 4.12
1610 3204 2.228103 GTCCGGAGAATGTTGGGAAAAC 59.772 50.000 3.06 0.00 0.00 2.43
1749 3771 4.154737 TGTGCAGCAAGACATGAGAATAAC 59.845 41.667 0.00 0.00 0.00 1.89
1779 3801 3.813166 TGCTGATCATCGTCGACATAGTA 59.187 43.478 17.16 0.00 0.00 1.82
2087 4110 6.128742 GCATGTGTTTTGAGAGCCAATTTTAG 60.129 38.462 0.00 0.00 34.23 1.85
2088 4111 6.463995 TGTGTTTTGAGAGCCAATTTTAGT 57.536 33.333 0.00 0.00 34.23 2.24
2178 4201 1.098050 GGCATCCGCATGAACTTCTT 58.902 50.000 0.00 0.00 41.24 2.52
2206 4229 9.088512 GTGAGAATAGACCTGTGTATGTTAAAG 57.911 37.037 0.00 0.00 0.00 1.85
2218 4241 6.072397 TGTGTATGTTAAAGCAATGGGTACAC 60.072 38.462 0.00 0.00 39.62 2.90
2292 6630 2.617021 GGAAGTTCCCAAGATAACGGCA 60.617 50.000 11.17 0.00 0.00 5.69
2318 6656 3.965379 TGTTCTGTATGGAACCGCTAA 57.035 42.857 5.15 0.00 43.31 3.09
2382 6720 1.724545 TACCGCCCTACCATTGCTAT 58.275 50.000 0.00 0.00 0.00 2.97
2409 6747 5.864474 TCAAACTTACAAGATTCGAGAGCTC 59.136 40.000 5.27 5.27 0.00 4.09
2448 6786 0.392998 GGAAGCGCCCTCTGATGAAA 60.393 55.000 2.29 0.00 0.00 2.69
2449 6787 0.729690 GAAGCGCCCTCTGATGAAAC 59.270 55.000 2.29 0.00 0.00 2.78
2487 7470 8.647226 GTTTAATTTTGTCAATGTATGTCCTGC 58.353 33.333 0.00 0.00 0.00 4.85
2626 7613 5.046950 TGTGCCCTTTTGTTTGAAAACTACT 60.047 36.000 7.39 0.00 39.59 2.57
2627 7614 5.518847 GTGCCCTTTTGTTTGAAAACTACTC 59.481 40.000 7.39 0.00 39.59 2.59
2629 7616 5.597806 CCCTTTTGTTTGAAAACTACTCCC 58.402 41.667 7.39 0.00 39.59 4.30
2630 7617 5.362717 CCCTTTTGTTTGAAAACTACTCCCT 59.637 40.000 7.39 0.00 39.59 4.20
2631 7618 6.461092 CCCTTTTGTTTGAAAACTACTCCCTC 60.461 42.308 7.39 0.00 39.59 4.30
2632 7619 6.459670 TTTTGTTTGAAAACTACTCCCTCC 57.540 37.500 7.39 0.00 39.59 4.30
2633 7620 3.735591 TGTTTGAAAACTACTCCCTCCG 58.264 45.455 7.39 0.00 39.59 4.63
2634 7621 2.467566 TTGAAAACTACTCCCTCCGC 57.532 50.000 0.00 0.00 0.00 5.54
2635 7622 0.611714 TGAAAACTACTCCCTCCGCC 59.388 55.000 0.00 0.00 0.00 6.13
2636 7623 0.903236 GAAAACTACTCCCTCCGCCT 59.097 55.000 0.00 0.00 0.00 5.52
2637 7624 0.903236 AAAACTACTCCCTCCGCCTC 59.097 55.000 0.00 0.00 0.00 4.70
2638 7625 0.252103 AAACTACTCCCTCCGCCTCA 60.252 55.000 0.00 0.00 0.00 3.86
2639 7626 0.032017 AACTACTCCCTCCGCCTCAT 60.032 55.000 0.00 0.00 0.00 2.90
2640 7627 0.851469 ACTACTCCCTCCGCCTCATA 59.149 55.000 0.00 0.00 0.00 2.15
2641 7628 1.217183 ACTACTCCCTCCGCCTCATAA 59.783 52.381 0.00 0.00 0.00 1.90
2642 7629 2.158295 ACTACTCCCTCCGCCTCATAAT 60.158 50.000 0.00 0.00 0.00 1.28
2643 7630 1.807814 ACTCCCTCCGCCTCATAATT 58.192 50.000 0.00 0.00 0.00 1.40
2644 7631 2.127708 ACTCCCTCCGCCTCATAATTT 58.872 47.619 0.00 0.00 0.00 1.82
2645 7632 3.314693 ACTCCCTCCGCCTCATAATTTA 58.685 45.455 0.00 0.00 0.00 1.40
2646 7633 3.714798 ACTCCCTCCGCCTCATAATTTAA 59.285 43.478 0.00 0.00 0.00 1.52
2647 7634 4.202367 ACTCCCTCCGCCTCATAATTTAAG 60.202 45.833 0.00 0.00 0.00 1.85
2648 7635 3.971305 TCCCTCCGCCTCATAATTTAAGA 59.029 43.478 0.00 0.00 0.00 2.10
2649 7636 4.040461 TCCCTCCGCCTCATAATTTAAGAG 59.960 45.833 2.38 2.38 0.00 2.85
2650 7637 3.748568 CCTCCGCCTCATAATTTAAGAGC 59.251 47.826 3.63 0.15 0.00 4.09
2651 7638 3.390135 TCCGCCTCATAATTTAAGAGCG 58.610 45.455 13.53 13.53 0.00 5.03
2652 7639 3.131396 CCGCCTCATAATTTAAGAGCGT 58.869 45.455 16.51 0.00 31.69 5.07
2653 7640 3.560068 CCGCCTCATAATTTAAGAGCGTT 59.440 43.478 16.51 0.00 31.69 4.84
2654 7641 4.035208 CCGCCTCATAATTTAAGAGCGTTT 59.965 41.667 16.51 0.00 31.69 3.60
2655 7642 5.448632 CCGCCTCATAATTTAAGAGCGTTTT 60.449 40.000 16.51 0.00 31.69 2.43
2656 7643 6.027749 CGCCTCATAATTTAAGAGCGTTTTT 58.972 36.000 12.83 0.00 0.00 1.94
2657 7644 6.021468 CGCCTCATAATTTAAGAGCGTTTTTG 60.021 38.462 12.83 0.00 0.00 2.44
2658 7645 7.027161 GCCTCATAATTTAAGAGCGTTTTTGA 58.973 34.615 3.63 0.00 0.00 2.69
2659 7646 7.008357 GCCTCATAATTTAAGAGCGTTTTTGAC 59.992 37.037 3.63 0.00 0.00 3.18
2660 7647 8.020819 CCTCATAATTTAAGAGCGTTTTTGACA 58.979 33.333 3.63 0.00 0.00 3.58
2661 7648 8.722342 TCATAATTTAAGAGCGTTTTTGACAC 57.278 30.769 0.00 0.00 0.00 3.67
2662 7649 8.564574 TCATAATTTAAGAGCGTTTTTGACACT 58.435 29.630 0.00 0.00 0.00 3.55
2663 7650 9.820229 CATAATTTAAGAGCGTTTTTGACACTA 57.180 29.630 0.00 0.00 0.00 2.74
2664 7651 9.821662 ATAATTTAAGAGCGTTTTTGACACTAC 57.178 29.630 0.00 0.00 0.00 2.73
2665 7652 6.665474 TTTAAGAGCGTTTTTGACACTACA 57.335 33.333 0.00 0.00 0.00 2.74
2666 7653 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
2667 7654 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
2668 7655 3.802685 AGAGCGTTTTTGACACTACACTC 59.197 43.478 0.00 0.00 0.00 3.51
2669 7656 3.793559 AGCGTTTTTGACACTACACTCT 58.206 40.909 0.00 0.00 0.00 3.24
2670 7657 4.189231 AGCGTTTTTGACACTACACTCTT 58.811 39.130 0.00 0.00 0.00 2.85
2671 7658 5.353938 AGCGTTTTTGACACTACACTCTTA 58.646 37.500 0.00 0.00 0.00 2.10
2672 7659 5.989777 AGCGTTTTTGACACTACACTCTTAT 59.010 36.000 0.00 0.00 0.00 1.73
2673 7660 7.149973 AGCGTTTTTGACACTACACTCTTATA 58.850 34.615 0.00 0.00 0.00 0.98
2674 7661 7.817962 AGCGTTTTTGACACTACACTCTTATAT 59.182 33.333 0.00 0.00 0.00 0.86
2675 7662 8.440833 GCGTTTTTGACACTACACTCTTATATT 58.559 33.333 0.00 0.00 0.00 1.28
2681 7668 9.429109 TTGACACTACACTCTTATATTATGGGA 57.571 33.333 0.00 0.00 0.00 4.37
2682 7669 8.857098 TGACACTACACTCTTATATTATGGGAC 58.143 37.037 0.00 0.00 0.00 4.46
2683 7670 7.883217 ACACTACACTCTTATATTATGGGACG 58.117 38.462 0.00 0.00 0.00 4.79
2684 7671 7.039923 ACACTACACTCTTATATTATGGGACGG 60.040 40.741 0.00 0.00 0.00 4.79
2685 7672 7.176165 CACTACACTCTTATATTATGGGACGGA 59.824 40.741 0.00 0.00 0.00 4.69
2686 7673 6.591750 ACACTCTTATATTATGGGACGGAG 57.408 41.667 0.00 0.00 0.00 4.63
2687 7674 5.480772 ACACTCTTATATTATGGGACGGAGG 59.519 44.000 0.00 0.00 0.00 4.30
2688 7675 5.024118 ACTCTTATATTATGGGACGGAGGG 58.976 45.833 0.00 0.00 0.00 4.30
2689 7676 3.773119 TCTTATATTATGGGACGGAGGGC 59.227 47.826 0.00 0.00 0.00 5.19
2690 7677 0.902531 ATATTATGGGACGGAGGGCG 59.097 55.000 0.00 0.00 0.00 6.13
2691 7678 0.470456 TATTATGGGACGGAGGGCGT 60.470 55.000 0.00 0.00 0.00 5.68
2692 7679 0.470456 ATTATGGGACGGAGGGCGTA 60.470 55.000 0.00 0.00 0.00 4.42
2733 7720 7.451501 TGCTTGTTTTGATCAGTCATGAATA 57.548 32.000 0.00 0.00 39.39 1.75
2734 7721 7.307694 TGCTTGTTTTGATCAGTCATGAATAC 58.692 34.615 0.00 0.00 39.39 1.89
2735 7722 7.040548 TGCTTGTTTTGATCAGTCATGAATACA 60.041 33.333 0.00 0.00 39.39 2.29
2736 7723 7.972277 GCTTGTTTTGATCAGTCATGAATACAT 59.028 33.333 0.00 0.00 39.39 2.29
2748 7735 4.757594 CATGAATACATGGTGGTTTTGGG 58.242 43.478 0.00 0.00 46.95 4.12
2749 7736 3.169099 TGAATACATGGTGGTTTTGGGG 58.831 45.455 0.00 0.00 0.00 4.96
2750 7737 3.181417 TGAATACATGGTGGTTTTGGGGA 60.181 43.478 0.00 0.00 0.00 4.81
2751 7738 2.296073 TACATGGTGGTTTTGGGGAC 57.704 50.000 0.00 0.00 0.00 4.46
2752 7739 0.825840 ACATGGTGGTTTTGGGGACG 60.826 55.000 0.00 0.00 0.00 4.79
2753 7740 1.228737 ATGGTGGTTTTGGGGACGG 60.229 57.895 0.00 0.00 0.00 4.79
2754 7741 2.599281 GGTGGTTTTGGGGACGGG 60.599 66.667 0.00 0.00 0.00 5.28
2755 7742 2.516909 GTGGTTTTGGGGACGGGA 59.483 61.111 0.00 0.00 0.00 5.14
2756 7743 1.152715 GTGGTTTTGGGGACGGGAA 60.153 57.895 0.00 0.00 0.00 3.97
2757 7744 1.152715 TGGTTTTGGGGACGGGAAC 60.153 57.895 0.00 0.00 0.00 3.62
2773 7760 2.801859 AACGTTTGGTTCCTGGGTG 58.198 52.632 0.00 0.00 31.79 4.61
2774 7761 0.033894 AACGTTTGGTTCCTGGGTGT 60.034 50.000 0.00 0.00 31.79 4.16
2775 7762 0.838608 ACGTTTGGTTCCTGGGTGTA 59.161 50.000 0.00 0.00 0.00 2.90
2776 7763 1.422402 ACGTTTGGTTCCTGGGTGTAT 59.578 47.619 0.00 0.00 0.00 2.29
2777 7764 2.638855 ACGTTTGGTTCCTGGGTGTATA 59.361 45.455 0.00 0.00 0.00 1.47
2778 7765 3.004862 CGTTTGGTTCCTGGGTGTATAC 58.995 50.000 0.00 0.00 0.00 1.47
2779 7766 3.557475 CGTTTGGTTCCTGGGTGTATACA 60.557 47.826 0.08 0.08 0.00 2.29
2780 7767 3.706600 TTGGTTCCTGGGTGTATACAC 57.293 47.619 25.00 25.00 45.72 2.90
2797 7784 8.988546 TGTATACACACCCTATATGCAAAAAT 57.011 30.769 0.08 0.00 0.00 1.82
2873 7860 8.625467 AAACTTGACCTTCTATTATACTCCCT 57.375 34.615 0.00 0.00 0.00 4.20
2874 7861 7.842887 ACTTGACCTTCTATTATACTCCCTC 57.157 40.000 0.00 0.00 0.00 4.30
2875 7862 6.783482 ACTTGACCTTCTATTATACTCCCTCC 59.217 42.308 0.00 0.00 0.00 4.30
2876 7863 5.322754 TGACCTTCTATTATACTCCCTCCG 58.677 45.833 0.00 0.00 0.00 4.63
2877 7864 5.163012 TGACCTTCTATTATACTCCCTCCGT 60.163 44.000 0.00 0.00 0.00 4.69
2878 7865 5.713807 ACCTTCTATTATACTCCCTCCGTT 58.286 41.667 0.00 0.00 0.00 4.44
2879 7866 6.141790 ACCTTCTATTATACTCCCTCCGTTT 58.858 40.000 0.00 0.00 0.00 3.60
2880 7867 6.614496 ACCTTCTATTATACTCCCTCCGTTTT 59.386 38.462 0.00 0.00 0.00 2.43
2881 7868 7.126879 ACCTTCTATTATACTCCCTCCGTTTTT 59.873 37.037 0.00 0.00 0.00 1.94
2882 7869 8.645110 CCTTCTATTATACTCCCTCCGTTTTTA 58.355 37.037 0.00 0.00 0.00 1.52
2889 7876 9.822185 TTATACTCCCTCCGTTTTTATTTACTC 57.178 33.333 0.00 0.00 0.00 2.59
2890 7877 5.494724 ACTCCCTCCGTTTTTATTTACTCC 58.505 41.667 0.00 0.00 0.00 3.85
2891 7878 4.506758 TCCCTCCGTTTTTATTTACTCCG 58.493 43.478 0.00 0.00 0.00 4.63
2892 7879 4.020307 TCCCTCCGTTTTTATTTACTCCGT 60.020 41.667 0.00 0.00 0.00 4.69
2893 7880 5.186797 TCCCTCCGTTTTTATTTACTCCGTA 59.813 40.000 0.00 0.00 0.00 4.02
2894 7881 6.051074 CCCTCCGTTTTTATTTACTCCGTAT 58.949 40.000 0.00 0.00 0.00 3.06
2895 7882 7.069331 TCCCTCCGTTTTTATTTACTCCGTATA 59.931 37.037 0.00 0.00 0.00 1.47
2896 7883 7.874528 CCCTCCGTTTTTATTTACTCCGTATAT 59.125 37.037 0.00 0.00 0.00 0.86
2897 7884 9.264719 CCTCCGTTTTTATTTACTCCGTATATT 57.735 33.333 0.00 0.00 0.00 1.28
2909 7896 8.969260 TTACTCCGTATATTAGAGTTGACTGA 57.031 34.615 7.36 0.00 41.09 3.41
2910 7897 7.876936 ACTCCGTATATTAGAGTTGACTGAA 57.123 36.000 0.00 0.00 37.60 3.02
2911 7898 8.289939 ACTCCGTATATTAGAGTTGACTGAAA 57.710 34.615 0.00 0.00 37.60 2.69
2912 7899 8.915036 ACTCCGTATATTAGAGTTGACTGAAAT 58.085 33.333 0.00 0.00 37.60 2.17
2913 7900 9.400638 CTCCGTATATTAGAGTTGACTGAAATC 57.599 37.037 0.00 0.00 0.00 2.17
2914 7901 8.909923 TCCGTATATTAGAGTTGACTGAAATCA 58.090 33.333 0.00 0.00 30.70 2.57
2915 7902 9.529325 CCGTATATTAGAGTTGACTGAAATCAA 57.471 33.333 0.00 0.00 36.23 2.57
2921 7908 8.731275 TTAGAGTTGACTGAAATCAAACTTCA 57.269 30.769 1.69 0.00 40.22 3.02
2922 7909 7.814264 AGAGTTGACTGAAATCAAACTTCAT 57.186 32.000 1.69 0.00 40.22 2.57
2923 7910 8.908786 AGAGTTGACTGAAATCAAACTTCATA 57.091 30.769 1.69 0.00 40.22 2.15
2924 7911 9.342308 AGAGTTGACTGAAATCAAACTTCATAA 57.658 29.630 1.69 0.00 40.22 1.90
2925 7912 9.950680 GAGTTGACTGAAATCAAACTTCATAAA 57.049 29.630 1.69 0.00 40.22 1.40
2926 7913 9.956720 AGTTGACTGAAATCAAACTTCATAAAG 57.043 29.630 0.00 0.00 40.22 1.85
2940 7927 7.639113 ACTTCATAAAGTTTGACCAAGTTCA 57.361 32.000 0.00 0.00 43.28 3.18
2941 7928 8.237811 ACTTCATAAAGTTTGACCAAGTTCAT 57.762 30.769 0.00 0.00 43.28 2.57
2942 7929 9.349713 ACTTCATAAAGTTTGACCAAGTTCATA 57.650 29.630 0.00 0.00 43.28 2.15
3077 8064 9.830975 ATAAAATTGGTCAAAGTTTACAAAGCT 57.169 25.926 0.00 0.00 40.13 3.74
3078 8065 8.560355 AAAATTGGTCAAAGTTTACAAAGCTT 57.440 26.923 0.00 0.00 34.44 3.74
3079 8066 7.538303 AATTGGTCAAAGTTTACAAAGCTTG 57.462 32.000 0.00 0.00 0.00 4.01
3080 8067 5.004922 TGGTCAAAGTTTACAAAGCTTGG 57.995 39.130 0.00 0.00 34.12 3.61
3081 8068 3.802139 GGTCAAAGTTTACAAAGCTTGGC 59.198 43.478 0.00 0.00 34.12 4.52
3082 8069 4.441495 GGTCAAAGTTTACAAAGCTTGGCT 60.441 41.667 0.00 0.00 42.56 4.75
3102 8089 3.670203 CTTTGACCAAAGCTAATACGCG 58.330 45.455 3.53 3.53 40.94 6.01
3103 8090 2.658373 TGACCAAAGCTAATACGCGA 57.342 45.000 15.93 0.00 34.40 5.87
3104 8091 2.962125 TGACCAAAGCTAATACGCGAA 58.038 42.857 15.93 0.00 34.40 4.70
3105 8092 2.669434 TGACCAAAGCTAATACGCGAAC 59.331 45.455 15.93 0.00 34.40 3.95
3106 8093 2.928116 GACCAAAGCTAATACGCGAACT 59.072 45.455 15.93 0.00 34.40 3.01
3107 8094 4.107622 GACCAAAGCTAATACGCGAACTA 58.892 43.478 15.93 0.00 34.40 2.24
3108 8095 4.497300 ACCAAAGCTAATACGCGAACTAA 58.503 39.130 15.93 0.00 34.40 2.24
3109 8096 4.931002 ACCAAAGCTAATACGCGAACTAAA 59.069 37.500 15.93 0.00 34.40 1.85
3110 8097 5.583457 ACCAAAGCTAATACGCGAACTAAAT 59.417 36.000 15.93 0.00 34.40 1.40
3111 8098 6.757947 ACCAAAGCTAATACGCGAACTAAATA 59.242 34.615 15.93 0.00 34.40 1.40
3112 8099 7.278424 ACCAAAGCTAATACGCGAACTAAATAA 59.722 33.333 15.93 0.00 34.40 1.40
3113 8100 8.117988 CCAAAGCTAATACGCGAACTAAATAAA 58.882 33.333 15.93 0.00 34.40 1.40
3114 8101 9.480538 CAAAGCTAATACGCGAACTAAATAAAA 57.519 29.630 15.93 0.00 34.40 1.52
3116 8103 9.481800 AAGCTAATACGCGAACTAAATAAAAAC 57.518 29.630 15.93 0.00 34.40 2.43
3117 8104 7.842721 AGCTAATACGCGAACTAAATAAAAACG 59.157 33.333 15.93 0.00 34.40 3.60
3118 8105 7.109259 GCTAATACGCGAACTAAATAAAAACGG 59.891 37.037 15.93 0.00 0.00 4.44
3119 8106 4.988708 ACGCGAACTAAATAAAAACGGA 57.011 36.364 15.93 0.00 0.00 4.69
3120 8107 4.949756 ACGCGAACTAAATAAAAACGGAG 58.050 39.130 15.93 0.00 0.00 4.63
3121 8108 4.143052 ACGCGAACTAAATAAAAACGGAGG 60.143 41.667 15.93 0.00 0.00 4.30
3122 8109 4.655027 GCGAACTAAATAAAAACGGAGGG 58.345 43.478 0.00 0.00 0.00 4.30
3123 8110 4.392754 GCGAACTAAATAAAAACGGAGGGA 59.607 41.667 0.00 0.00 0.00 4.20
3124 8111 5.446875 GCGAACTAAATAAAAACGGAGGGAG 60.447 44.000 0.00 0.00 0.00 4.30
3125 8112 5.640783 CGAACTAAATAAAAACGGAGGGAGT 59.359 40.000 0.00 0.00 0.00 3.85
3126 8113 6.813152 CGAACTAAATAAAAACGGAGGGAGTA 59.187 38.462 0.00 0.00 0.00 2.59
3127 8114 7.201470 CGAACTAAATAAAAACGGAGGGAGTAC 60.201 40.741 0.00 0.00 0.00 2.73
3128 8115 7.250032 ACTAAATAAAAACGGAGGGAGTACT 57.750 36.000 0.00 0.00 0.00 2.73
3129 8116 7.683578 ACTAAATAAAAACGGAGGGAGTACTT 58.316 34.615 0.00 0.00 0.00 2.24
3130 8117 6.812879 AAATAAAAACGGAGGGAGTACTTG 57.187 37.500 0.00 0.00 0.00 3.16
3131 8118 3.851458 AAAAACGGAGGGAGTACTTGT 57.149 42.857 0.00 0.00 0.00 3.16
3132 8119 2.833631 AAACGGAGGGAGTACTTGTG 57.166 50.000 0.00 0.00 0.00 3.33
3133 8120 2.005370 AACGGAGGGAGTACTTGTGA 57.995 50.000 0.00 0.00 0.00 3.58
3134 8121 1.546961 ACGGAGGGAGTACTTGTGAG 58.453 55.000 0.00 0.00 0.00 3.51
3135 8122 1.075050 ACGGAGGGAGTACTTGTGAGA 59.925 52.381 0.00 0.00 0.00 3.27
3136 8123 2.168496 CGGAGGGAGTACTTGTGAGAA 58.832 52.381 0.00 0.00 0.00 2.87
3137 8124 2.561419 CGGAGGGAGTACTTGTGAGAAA 59.439 50.000 0.00 0.00 0.00 2.52
3138 8125 3.006537 CGGAGGGAGTACTTGTGAGAAAA 59.993 47.826 0.00 0.00 0.00 2.29
3139 8126 4.322801 CGGAGGGAGTACTTGTGAGAAAAT 60.323 45.833 0.00 0.00 0.00 1.82
3140 8127 5.561679 GGAGGGAGTACTTGTGAGAAAATT 58.438 41.667 0.00 0.00 0.00 1.82
3141 8128 6.004574 GGAGGGAGTACTTGTGAGAAAATTT 58.995 40.000 0.00 0.00 0.00 1.82
3142 8129 6.490381 GGAGGGAGTACTTGTGAGAAAATTTT 59.510 38.462 2.28 2.28 0.00 1.82
3143 8130 7.308649 GGAGGGAGTACTTGTGAGAAAATTTTC 60.309 40.741 21.00 21.00 37.45 2.29
3144 8131 7.060421 AGGGAGTACTTGTGAGAAAATTTTCA 58.940 34.615 28.00 10.64 39.61 2.69
3145 8132 7.013369 AGGGAGTACTTGTGAGAAAATTTTCAC 59.987 37.037 28.00 23.04 43.07 3.18
3178 8165 9.889128 AAAATGATCCTTTGACTTCTTTTCAAA 57.111 25.926 0.00 0.00 39.99 2.69
3179 8166 9.889128 AAATGATCCTTTGACTTCTTTTCAAAA 57.111 25.926 0.00 0.00 41.32 2.44
3180 8167 9.889128 AATGATCCTTTGACTTCTTTTCAAAAA 57.111 25.926 0.00 0.00 41.32 1.94
3207 8194 9.520204 AGACAAATTTTCAGTCAAAATAGTGTG 57.480 29.630 6.29 0.00 42.86 3.82
3208 8195 9.515020 GACAAATTTTCAGTCAAAATAGTGTGA 57.485 29.630 6.29 0.00 42.86 3.58
3209 8196 9.868277 ACAAATTTTCAGTCAAAATAGTGTGAA 57.132 25.926 2.06 0.00 42.86 3.18
3215 8202 9.554395 TTTCAGTCAAAATAGTGTGAATAGTGA 57.446 29.630 0.00 0.00 0.00 3.41
3216 8203 8.534333 TCAGTCAAAATAGTGTGAATAGTGAC 57.466 34.615 0.00 0.00 34.46 3.67
3217 8204 7.602644 TCAGTCAAAATAGTGTGAATAGTGACC 59.397 37.037 0.00 0.00 34.73 4.02
3218 8205 7.604164 CAGTCAAAATAGTGTGAATAGTGACCT 59.396 37.037 0.00 0.00 34.73 3.85
3219 8206 8.812972 AGTCAAAATAGTGTGAATAGTGACCTA 58.187 33.333 0.00 0.00 34.73 3.08
3220 8207 9.601217 GTCAAAATAGTGTGAATAGTGACCTAT 57.399 33.333 0.00 0.00 35.33 2.57
3227 8214 8.478775 AGTGTGAATAGTGACCTATAATAGCA 57.521 34.615 0.00 0.00 32.57 3.49
3228 8215 8.924303 AGTGTGAATAGTGACCTATAATAGCAA 58.076 33.333 0.00 0.00 32.57 3.91
3229 8216 9.542462 GTGTGAATAGTGACCTATAATAGCAAA 57.458 33.333 0.00 0.00 32.57 3.68
3264 8251 5.443230 TTTTTCCCTGGATGTTGGTTTTT 57.557 34.783 0.00 0.00 0.00 1.94
3265 8252 4.681074 TTTCCCTGGATGTTGGTTTTTC 57.319 40.909 0.00 0.00 0.00 2.29
3266 8253 2.235016 TCCCTGGATGTTGGTTTTTCG 58.765 47.619 0.00 0.00 0.00 3.46
3267 8254 1.960689 CCCTGGATGTTGGTTTTTCGT 59.039 47.619 0.00 0.00 0.00 3.85
3268 8255 2.288152 CCCTGGATGTTGGTTTTTCGTG 60.288 50.000 0.00 0.00 0.00 4.35
3269 8256 2.621055 CCTGGATGTTGGTTTTTCGTGA 59.379 45.455 0.00 0.00 0.00 4.35
3270 8257 3.067461 CCTGGATGTTGGTTTTTCGTGAA 59.933 43.478 0.00 0.00 0.00 3.18
3271 8258 4.440802 CCTGGATGTTGGTTTTTCGTGAAA 60.441 41.667 0.00 0.00 0.00 2.69
3272 8259 5.073311 TGGATGTTGGTTTTTCGTGAAAA 57.927 34.783 3.74 3.74 38.40 2.29
3273 8260 5.665459 TGGATGTTGGTTTTTCGTGAAAAT 58.335 33.333 8.46 0.00 39.69 1.82
3274 8261 6.109359 TGGATGTTGGTTTTTCGTGAAAATT 58.891 32.000 8.46 0.00 39.69 1.82
3275 8262 6.595716 TGGATGTTGGTTTTTCGTGAAAATTT 59.404 30.769 8.46 0.00 39.69 1.82
3276 8263 7.764443 TGGATGTTGGTTTTTCGTGAAAATTTA 59.236 29.630 8.46 0.00 39.69 1.40
3277 8264 8.769891 GGATGTTGGTTTTTCGTGAAAATTTAT 58.230 29.630 8.46 0.01 39.69 1.40
3302 8289 9.726438 ATATACTAGAGCAAAACAAAGTCAAGT 57.274 29.630 0.00 0.00 0.00 3.16
3303 8290 6.759497 ACTAGAGCAAAACAAAGTCAAGTT 57.241 33.333 0.00 0.00 0.00 2.66
3304 8291 7.158099 ACTAGAGCAAAACAAAGTCAAGTTT 57.842 32.000 0.00 0.00 39.46 2.66
3305 8292 8.276252 ACTAGAGCAAAACAAAGTCAAGTTTA 57.724 30.769 0.00 0.00 36.98 2.01
3306 8293 8.736244 ACTAGAGCAAAACAAAGTCAAGTTTAA 58.264 29.630 0.00 0.00 36.98 1.52
3307 8294 9.736023 CTAGAGCAAAACAAAGTCAAGTTTAAT 57.264 29.630 0.00 0.00 36.98 1.40
3308 8295 8.634475 AGAGCAAAACAAAGTCAAGTTTAATC 57.366 30.769 0.00 0.00 36.98 1.75
3309 8296 8.470002 AGAGCAAAACAAAGTCAAGTTTAATCT 58.530 29.630 0.00 0.00 36.98 2.40
3310 8297 9.730420 GAGCAAAACAAAGTCAAGTTTAATCTA 57.270 29.630 0.00 0.00 36.98 1.98
3380 8367 8.568617 AAATCCTCATATAGGGATATACACCC 57.431 38.462 8.36 8.36 46.55 4.61
3388 8375 2.414612 GGGATATACACCCAGGAACCA 58.585 52.381 10.83 0.00 46.05 3.67
3389 8376 2.781174 GGGATATACACCCAGGAACCAA 59.219 50.000 10.83 0.00 46.05 3.67
3390 8377 3.203487 GGGATATACACCCAGGAACCAAA 59.797 47.826 10.83 0.00 46.05 3.28
3391 8378 4.461198 GGATATACACCCAGGAACCAAAG 58.539 47.826 0.00 0.00 0.00 2.77
3392 8379 2.899303 ATACACCCAGGAACCAAAGG 57.101 50.000 0.00 0.00 0.00 3.11
3393 8380 0.774908 TACACCCAGGAACCAAAGGG 59.225 55.000 12.28 12.28 46.96 3.95
3403 8390 4.519610 CCAAAGGGTGGTTCCTGG 57.480 61.111 0.00 0.00 43.20 4.45
3404 8391 1.541672 CCAAAGGGTGGTTCCTGGT 59.458 57.895 0.00 0.00 43.20 4.00
3405 8392 0.105709 CCAAAGGGTGGTTCCTGGTT 60.106 55.000 0.00 0.00 43.20 3.67
3406 8393 1.039856 CAAAGGGTGGTTCCTGGTTG 58.960 55.000 0.00 0.00 37.20 3.77
3407 8394 0.634465 AAAGGGTGGTTCCTGGTTGT 59.366 50.000 0.00 0.00 37.20 3.32
3408 8395 1.525175 AAGGGTGGTTCCTGGTTGTA 58.475 50.000 0.00 0.00 37.20 2.41
3409 8396 1.755200 AGGGTGGTTCCTGGTTGTAT 58.245 50.000 0.00 0.00 35.47 2.29
3410 8397 2.923908 AGGGTGGTTCCTGGTTGTATA 58.076 47.619 0.00 0.00 35.47 1.47
3411 8398 3.470868 AGGGTGGTTCCTGGTTGTATAT 58.529 45.455 0.00 0.00 35.47 0.86
3412 8399 4.637600 AGGGTGGTTCCTGGTTGTATATA 58.362 43.478 0.00 0.00 35.47 0.86
3413 8400 4.411212 AGGGTGGTTCCTGGTTGTATATAC 59.589 45.833 5.89 5.89 35.47 1.47
3414 8401 4.164604 GGGTGGTTCCTGGTTGTATATACA 59.835 45.833 11.62 11.62 36.25 2.29
3415 8402 5.121105 GGTGGTTCCTGGTTGTATATACAC 58.879 45.833 15.20 10.24 35.64 2.90
3416 8403 5.121105 GTGGTTCCTGGTTGTATATACACC 58.879 45.833 15.20 17.88 35.64 4.16
3417 8404 4.164604 TGGTTCCTGGTTGTATATACACCC 59.835 45.833 19.76 19.76 39.02 4.61
3418 8405 4.411212 GGTTCCTGGTTGTATATACACCCT 59.589 45.833 24.87 0.00 39.28 4.34
3419 8406 5.603813 GGTTCCTGGTTGTATATACACCCTA 59.396 44.000 24.87 13.50 39.28 3.53
3420 8407 6.271624 GGTTCCTGGTTGTATATACACCCTAT 59.728 42.308 24.87 0.00 39.28 2.57
3421 8408 7.455638 GGTTCCTGGTTGTATATACACCCTATA 59.544 40.741 24.87 11.03 39.28 1.31
3422 8409 9.043548 GTTCCTGGTTGTATATACACCCTATAT 57.956 37.037 24.87 0.00 39.28 0.86
3423 8410 8.603898 TCCTGGTTGTATATACACCCTATATG 57.396 38.462 24.87 12.05 39.28 1.78
3424 8411 7.125204 TCCTGGTTGTATATACACCCTATATGC 59.875 40.741 24.87 3.15 39.28 3.14
3425 8412 7.093068 CCTGGTTGTATATACACCCTATATGCA 60.093 40.741 24.87 7.01 39.28 3.96
3426 8413 8.208575 TGGTTGTATATACACCCTATATGCAA 57.791 34.615 24.87 4.77 39.28 4.08
3427 8414 8.661345 TGGTTGTATATACACCCTATATGCAAA 58.339 33.333 24.87 4.15 41.03 3.68
3428 8415 9.509956 GGTTGTATATACACCCTATATGCAAAA 57.490 33.333 19.40 0.00 41.03 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.296755 GAAAGGGAAACGGGAGCGTC 61.297 60.000 0.00 0.00 0.00 5.19
48 49 0.953960 CCTGTCGAAAGGGAAACGGG 60.954 60.000 14.50 0.00 33.28 5.28
87 88 7.375053 TGGGTTTTAAATGAATCGGAAAGAAG 58.625 34.615 0.00 0.00 0.00 2.85
96 97 9.087424 GTTCAGCTAATGGGTTTTAAATGAATC 57.913 33.333 0.00 0.00 0.00 2.52
98 99 7.957002 TGTTCAGCTAATGGGTTTTAAATGAA 58.043 30.769 0.00 0.00 0.00 2.57
100 101 7.872483 ACTTGTTCAGCTAATGGGTTTTAAATG 59.128 33.333 0.00 0.00 0.00 2.32
101 102 7.872483 CACTTGTTCAGCTAATGGGTTTTAAAT 59.128 33.333 0.00 0.00 0.00 1.40
105 135 4.039124 CCACTTGTTCAGCTAATGGGTTTT 59.961 41.667 0.00 0.00 0.00 2.43
109 139 1.474077 GCCACTTGTTCAGCTAATGGG 59.526 52.381 0.00 0.00 0.00 4.00
110 140 2.440409 AGCCACTTGTTCAGCTAATGG 58.560 47.619 0.00 0.00 32.73 3.16
122 152 3.296322 TTTTAATCCGCAAGCCACTTG 57.704 42.857 2.95 2.95 43.57 3.16
129 159 6.532657 AGCAATCTTCAATTTTAATCCGCAAG 59.467 34.615 0.00 0.00 0.00 4.01
142 172 6.785337 TGAAATCATCCAGCAATCTTCAAT 57.215 33.333 0.00 0.00 0.00 2.57
145 175 6.802608 TGATTGAAATCATCCAGCAATCTTC 58.197 36.000 0.46 0.00 43.07 2.87
146 176 6.785337 TGATTGAAATCATCCAGCAATCTT 57.215 33.333 0.46 0.00 43.07 2.40
147 177 6.785337 TTGATTGAAATCATCCAGCAATCT 57.215 33.333 6.56 0.00 44.27 2.40
195 225 2.564504 CCTGCTAGTCTGCTGCCATATA 59.435 50.000 0.00 0.00 0.00 0.86
199 229 0.614697 TACCTGCTAGTCTGCTGCCA 60.615 55.000 0.00 0.00 0.00 4.92
200 230 0.537188 TTACCTGCTAGTCTGCTGCC 59.463 55.000 0.00 0.00 0.00 4.85
220 250 9.120538 ACATTTAGTTCTCAAAGTTGCTAAAGA 57.879 29.630 0.00 0.00 33.69 2.52
245 1003 6.481313 AGAACCGTCCTTGAACTAAAACTTAC 59.519 38.462 0.00 0.00 0.00 2.34
248 1006 4.814771 CAGAACCGTCCTTGAACTAAAACT 59.185 41.667 0.00 0.00 0.00 2.66
249 1007 4.812626 TCAGAACCGTCCTTGAACTAAAAC 59.187 41.667 0.00 0.00 0.00 2.43
250 1008 5.026038 TCAGAACCGTCCTTGAACTAAAA 57.974 39.130 0.00 0.00 0.00 1.52
385 1188 1.338200 GCACTGACCAAGTCCTACCAG 60.338 57.143 0.00 0.00 36.83 4.00
387 1190 0.685097 TGCACTGACCAAGTCCTACC 59.315 55.000 0.00 0.00 36.83 3.18
430 1456 2.512485 TTGCTGCCAACACTTCATTG 57.488 45.000 0.00 0.00 0.00 2.82
466 1493 5.005740 TCCATCAAACTGACTTGAATGAGG 58.994 41.667 2.12 0.00 38.75 3.86
471 1498 5.551305 TCTCTCCATCAAACTGACTTGAA 57.449 39.130 2.12 0.00 38.75 2.69
488 1526 9.577110 TGAAACATCAATGCATATTTTTCTCTC 57.423 29.630 16.44 3.30 0.00 3.20
502 1540 3.916172 CCTTTGTCGCTGAAACATCAATG 59.084 43.478 0.00 0.00 0.00 2.82
503 1541 3.612479 GCCTTTGTCGCTGAAACATCAAT 60.612 43.478 0.00 0.00 0.00 2.57
504 1542 2.287547 GCCTTTGTCGCTGAAACATCAA 60.288 45.455 0.00 0.00 0.00 2.57
510 1548 1.152860 TGGGCCTTTGTCGCTGAAA 60.153 52.632 4.53 0.00 0.00 2.69
517 1555 1.662044 CAACTGCTGGGCCTTTGTC 59.338 57.895 4.53 0.00 0.00 3.18
529 1567 0.868406 CTTGACCGAGAACCAACTGC 59.132 55.000 0.00 0.00 0.00 4.40
614 1702 3.887621 TTCTCTATCAACCGAACCTGG 57.112 47.619 0.00 0.00 0.00 4.45
642 1730 3.609853 GAGCCATCACCACACAGATTTA 58.390 45.455 0.00 0.00 0.00 1.40
644 1732 1.676916 CGAGCCATCACCACACAGATT 60.677 52.381 0.00 0.00 0.00 2.40
677 2090 2.889852 GGTACAACACCCGATCTCTTC 58.110 52.381 0.00 0.00 42.07 2.87
700 2114 6.478344 CCATAGACTTGACTGACTCTTAATGC 59.522 42.308 0.00 0.00 0.00 3.56
709 2123 5.091261 ACCATTCCATAGACTTGACTGAC 57.909 43.478 0.00 0.00 0.00 3.51
954 2516 3.430453 TCCTTGGGAATGAATGAACACC 58.570 45.455 0.00 0.00 0.00 4.16
998 2577 5.974108 AGGCAGAAATGAAAATCTCCATTG 58.026 37.500 0.00 0.00 33.70 2.82
1020 2599 8.915057 ATCTTGATATAAGTTCACCCATCAAG 57.085 34.615 13.38 13.38 45.42 3.02
1035 2614 6.349363 CGATGGAACTCACCGATCTTGATATA 60.349 42.308 0.00 0.00 0.00 0.86
1060 2639 3.057526 GGTGGCTTGGAGTATTTGTTGAC 60.058 47.826 0.00 0.00 0.00 3.18
1255 2834 8.156165 AGCCAGATTATTCTCCTCTTCTTTATG 58.844 37.037 0.00 0.00 0.00 1.90
1257 2836 7.126421 ACAGCCAGATTATTCTCCTCTTCTTTA 59.874 37.037 0.00 0.00 0.00 1.85
1339 2918 2.257894 TGTTCTTTTGTTGTTGCTGCG 58.742 42.857 0.00 0.00 0.00 5.18
1360 2939 2.694760 CCTCTTCAAGCCCTTGCGC 61.695 63.158 0.00 0.00 44.33 6.09
1362 2941 2.346541 GGCCTCTTCAAGCCCTTGC 61.347 63.158 0.00 0.00 43.76 4.01
1454 3033 1.594862 GCATGATGTAAGGCTGACGAC 59.405 52.381 0.00 0.00 0.00 4.34
1543 3122 3.878086 ACAAGTACAAGATTGTGTGCG 57.122 42.857 8.46 0.00 42.31 5.34
1605 3199 2.210116 TGAGCGACAAGACTGGTTTTC 58.790 47.619 0.00 0.00 0.00 2.29
1610 3204 3.379240 CAGATATGAGCGACAAGACTGG 58.621 50.000 0.00 0.00 0.00 4.00
1749 3771 1.269988 ACGATGATCAGCAATCTCCCG 60.270 52.381 12.15 0.00 35.24 5.14
1779 3801 1.611519 GATCTTCGTCGAGATCCCCT 58.388 55.000 17.10 0.00 44.01 4.79
2087 4110 5.183904 AGAACCTTGCACCAGAAATTGATAC 59.816 40.000 0.00 0.00 0.00 2.24
2088 4111 5.183713 CAGAACCTTGCACCAGAAATTGATA 59.816 40.000 0.00 0.00 0.00 2.15
2178 4201 7.956328 AACATACACAGGTCTATTCTCACTA 57.044 36.000 0.00 0.00 0.00 2.74
2206 4229 3.055385 TCTTCAGTAGGTGTACCCATTGC 60.055 47.826 0.00 0.00 36.42 3.56
2218 4241 9.829507 ATCAAGAACAAGAATATCTTCAGTAGG 57.170 33.333 0.00 0.00 33.78 3.18
2292 6630 4.441634 GCGGTTCCATACAGAACATCTACT 60.442 45.833 6.73 0.00 46.52 2.57
2382 6720 8.035394 AGCTCTCGAATCTTGTAAGTTTGAATA 58.965 33.333 0.00 0.00 0.00 1.75
2409 6747 2.418471 CCTCTTCACTGCTCTAGCTTGG 60.418 54.545 3.26 0.00 42.66 3.61
2484 6826 2.105006 AGTGGCACAAGAGTATGCAG 57.895 50.000 21.41 0.00 44.16 4.41
2487 7470 6.676456 GCAGAAAATAGTGGCACAAGAGTATG 60.676 42.308 21.41 11.56 44.16 2.39
2581 7565 2.301346 ACTTGCACTCTGGGAAAACTG 58.699 47.619 0.00 0.00 0.00 3.16
2626 7613 3.971305 TCTTAAATTATGAGGCGGAGGGA 59.029 43.478 0.00 0.00 0.00 4.20
2627 7614 4.319177 CTCTTAAATTATGAGGCGGAGGG 58.681 47.826 7.73 0.00 0.00 4.30
2629 7616 3.430218 CGCTCTTAAATTATGAGGCGGAG 59.570 47.826 14.97 0.00 32.05 4.63
2630 7617 3.181469 ACGCTCTTAAATTATGAGGCGGA 60.181 43.478 22.53 0.00 35.72 5.54
2631 7618 3.131396 ACGCTCTTAAATTATGAGGCGG 58.869 45.455 22.53 13.02 35.72 6.13
2632 7619 4.795970 AACGCTCTTAAATTATGAGGCG 57.204 40.909 19.85 19.85 36.53 5.52
2633 7620 7.008357 GTCAAAAACGCTCTTAAATTATGAGGC 59.992 37.037 14.97 8.34 32.35 4.70
2634 7621 8.020819 TGTCAAAAACGCTCTTAAATTATGAGG 58.979 33.333 14.97 9.21 32.35 3.86
2635 7622 8.840867 GTGTCAAAAACGCTCTTAAATTATGAG 58.159 33.333 10.49 10.49 35.42 2.90
2636 7623 8.564574 AGTGTCAAAAACGCTCTTAAATTATGA 58.435 29.630 0.00 0.00 45.69 2.15
2637 7624 8.728088 AGTGTCAAAAACGCTCTTAAATTATG 57.272 30.769 0.00 0.00 45.69 1.90
2638 7625 9.821662 GTAGTGTCAAAAACGCTCTTAAATTAT 57.178 29.630 0.00 0.00 45.69 1.28
2639 7626 8.828644 TGTAGTGTCAAAAACGCTCTTAAATTA 58.171 29.630 0.00 0.00 45.69 1.40
2640 7627 7.642586 GTGTAGTGTCAAAAACGCTCTTAAATT 59.357 33.333 0.00 0.00 45.69 1.82
2641 7628 7.012044 AGTGTAGTGTCAAAAACGCTCTTAAAT 59.988 33.333 0.00 0.00 45.69 1.40
2642 7629 6.314400 AGTGTAGTGTCAAAAACGCTCTTAAA 59.686 34.615 0.00 0.00 45.69 1.52
2643 7630 5.813672 AGTGTAGTGTCAAAAACGCTCTTAA 59.186 36.000 0.00 0.00 45.69 1.85
2644 7631 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
2645 7632 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
2646 7633 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
2647 7634 3.802685 AGAGTGTAGTGTCAAAAACGCTC 59.197 43.478 12.70 12.70 45.69 5.03
2649 7636 4.531659 AAGAGTGTAGTGTCAAAAACGC 57.468 40.909 0.00 0.00 38.74 4.84
2655 7642 9.429109 TCCCATAATATAAGAGTGTAGTGTCAA 57.571 33.333 0.00 0.00 0.00 3.18
2656 7643 8.857098 GTCCCATAATATAAGAGTGTAGTGTCA 58.143 37.037 0.00 0.00 0.00 3.58
2657 7644 8.021973 CGTCCCATAATATAAGAGTGTAGTGTC 58.978 40.741 0.00 0.00 0.00 3.67
2658 7645 7.039923 CCGTCCCATAATATAAGAGTGTAGTGT 60.040 40.741 0.00 0.00 0.00 3.55
2659 7646 7.176165 TCCGTCCCATAATATAAGAGTGTAGTG 59.824 40.741 0.00 0.00 0.00 2.74
2660 7647 7.236529 TCCGTCCCATAATATAAGAGTGTAGT 58.763 38.462 0.00 0.00 0.00 2.73
2661 7648 7.148052 CCTCCGTCCCATAATATAAGAGTGTAG 60.148 44.444 0.00 0.00 0.00 2.74
2662 7649 6.662234 CCTCCGTCCCATAATATAAGAGTGTA 59.338 42.308 0.00 0.00 0.00 2.90
2663 7650 5.480772 CCTCCGTCCCATAATATAAGAGTGT 59.519 44.000 0.00 0.00 0.00 3.55
2664 7651 5.105310 CCCTCCGTCCCATAATATAAGAGTG 60.105 48.000 0.00 0.00 0.00 3.51
2665 7652 5.024118 CCCTCCGTCCCATAATATAAGAGT 58.976 45.833 0.00 0.00 0.00 3.24
2666 7653 4.141914 GCCCTCCGTCCCATAATATAAGAG 60.142 50.000 0.00 0.00 0.00 2.85
2667 7654 3.773119 GCCCTCCGTCCCATAATATAAGA 59.227 47.826 0.00 0.00 0.00 2.10
2668 7655 3.430374 CGCCCTCCGTCCCATAATATAAG 60.430 52.174 0.00 0.00 0.00 1.73
2669 7656 2.498481 CGCCCTCCGTCCCATAATATAA 59.502 50.000 0.00 0.00 0.00 0.98
2670 7657 2.104967 CGCCCTCCGTCCCATAATATA 58.895 52.381 0.00 0.00 0.00 0.86
2671 7658 0.902531 CGCCCTCCGTCCCATAATAT 59.097 55.000 0.00 0.00 0.00 1.28
2672 7659 2.358039 CGCCCTCCGTCCCATAATA 58.642 57.895 0.00 0.00 0.00 0.98
2673 7660 3.148084 CGCCCTCCGTCCCATAAT 58.852 61.111 0.00 0.00 0.00 1.28
2682 7669 1.362717 CAGTATGGTACGCCCTCCG 59.637 63.158 0.00 0.00 44.21 4.63
2733 7720 0.825840 CGTCCCCAAAACCACCATGT 60.826 55.000 0.00 0.00 0.00 3.21
2734 7721 1.531739 CCGTCCCCAAAACCACCATG 61.532 60.000 0.00 0.00 0.00 3.66
2735 7722 1.228737 CCGTCCCCAAAACCACCAT 60.229 57.895 0.00 0.00 0.00 3.55
2736 7723 2.196229 CCGTCCCCAAAACCACCA 59.804 61.111 0.00 0.00 0.00 4.17
2737 7724 2.599281 CCCGTCCCCAAAACCACC 60.599 66.667 0.00 0.00 0.00 4.61
2738 7725 1.152715 TTCCCGTCCCCAAAACCAC 60.153 57.895 0.00 0.00 0.00 4.16
2739 7726 1.152715 GTTCCCGTCCCCAAAACCA 60.153 57.895 0.00 0.00 0.00 3.67
2740 7727 2.263021 CGTTCCCGTCCCCAAAACC 61.263 63.158 0.00 0.00 0.00 3.27
2741 7728 1.526686 ACGTTCCCGTCCCCAAAAC 60.527 57.895 0.00 0.00 46.28 2.43
2742 7729 2.917454 ACGTTCCCGTCCCCAAAA 59.083 55.556 0.00 0.00 46.28 2.44
2755 7742 0.033894 ACACCCAGGAACCAAACGTT 60.034 50.000 0.00 0.00 37.41 3.99
2756 7743 0.838608 TACACCCAGGAACCAAACGT 59.161 50.000 0.00 0.00 0.00 3.99
2757 7744 2.194201 ATACACCCAGGAACCAAACG 57.806 50.000 0.00 0.00 0.00 3.60
2758 7745 3.754850 GTGTATACACCCAGGAACCAAAC 59.245 47.826 23.03 0.00 40.85 2.93
2759 7746 3.394940 TGTGTATACACCCAGGAACCAAA 59.605 43.478 28.67 6.82 45.88 3.28
2760 7747 2.980379 TGTGTATACACCCAGGAACCAA 59.020 45.455 28.67 7.31 45.88 3.67
2761 7748 2.622210 TGTGTATACACCCAGGAACCA 58.378 47.619 28.67 8.05 45.88 3.67
2772 7759 8.988546 ATTTTTGCATATAGGGTGTGTATACA 57.011 30.769 0.08 0.08 0.00 2.29
2847 7834 9.725206 AGGGAGTATAATAGAAGGTCAAGTTTA 57.275 33.333 0.00 0.00 0.00 2.01
2848 7835 8.625467 AGGGAGTATAATAGAAGGTCAAGTTT 57.375 34.615 0.00 0.00 0.00 2.66
2849 7836 7.290481 GGAGGGAGTATAATAGAAGGTCAAGTT 59.710 40.741 0.00 0.00 0.00 2.66
2850 7837 6.783482 GGAGGGAGTATAATAGAAGGTCAAGT 59.217 42.308 0.00 0.00 0.00 3.16
2851 7838 6.071840 CGGAGGGAGTATAATAGAAGGTCAAG 60.072 46.154 0.00 0.00 0.00 3.02
2852 7839 5.773680 CGGAGGGAGTATAATAGAAGGTCAA 59.226 44.000 0.00 0.00 0.00 3.18
2853 7840 5.163012 ACGGAGGGAGTATAATAGAAGGTCA 60.163 44.000 0.00 0.00 0.00 4.02
2854 7841 5.323581 ACGGAGGGAGTATAATAGAAGGTC 58.676 45.833 0.00 0.00 0.00 3.85
2855 7842 5.336491 ACGGAGGGAGTATAATAGAAGGT 57.664 43.478 0.00 0.00 0.00 3.50
2856 7843 6.667558 AAACGGAGGGAGTATAATAGAAGG 57.332 41.667 0.00 0.00 0.00 3.46
2863 7850 9.822185 GAGTAAATAAAAACGGAGGGAGTATAA 57.178 33.333 0.00 0.00 0.00 0.98
2864 7851 8.424133 GGAGTAAATAAAAACGGAGGGAGTATA 58.576 37.037 0.00 0.00 0.00 1.47
2865 7852 7.278135 GGAGTAAATAAAAACGGAGGGAGTAT 58.722 38.462 0.00 0.00 0.00 2.12
2866 7853 6.627953 CGGAGTAAATAAAAACGGAGGGAGTA 60.628 42.308 0.00 0.00 0.00 2.59
2867 7854 5.494724 GGAGTAAATAAAAACGGAGGGAGT 58.505 41.667 0.00 0.00 0.00 3.85
2868 7855 4.569564 CGGAGTAAATAAAAACGGAGGGAG 59.430 45.833 0.00 0.00 0.00 4.30
2869 7856 4.020307 ACGGAGTAAATAAAAACGGAGGGA 60.020 41.667 0.00 0.00 41.94 4.20
2870 7857 4.256110 ACGGAGTAAATAAAAACGGAGGG 58.744 43.478 0.00 0.00 41.94 4.30
2887 7874 9.400638 GATTTCAGTCAACTCTAATATACGGAG 57.599 37.037 0.00 0.00 0.00 4.63
2888 7875 8.909923 TGATTTCAGTCAACTCTAATATACGGA 58.090 33.333 0.00 0.00 0.00 4.69
2889 7876 9.529325 TTGATTTCAGTCAACTCTAATATACGG 57.471 33.333 0.00 0.00 33.41 4.02
2895 7882 9.342308 TGAAGTTTGATTTCAGTCAACTCTAAT 57.658 29.630 0.00 0.00 37.80 1.73
2896 7883 8.731275 TGAAGTTTGATTTCAGTCAACTCTAA 57.269 30.769 0.00 0.00 37.80 2.10
2897 7884 8.908786 ATGAAGTTTGATTTCAGTCAACTCTA 57.091 30.769 0.00 0.00 37.80 2.43
2898 7885 7.814264 ATGAAGTTTGATTTCAGTCAACTCT 57.186 32.000 0.00 0.00 37.80 3.24
2899 7886 9.950680 TTTATGAAGTTTGATTTCAGTCAACTC 57.049 29.630 0.00 0.00 37.80 3.01
2900 7887 9.956720 CTTTATGAAGTTTGATTTCAGTCAACT 57.043 29.630 0.00 0.00 37.80 3.16
2901 7888 9.736023 ACTTTATGAAGTTTGATTTCAGTCAAC 57.264 29.630 0.00 0.00 43.48 3.18
3051 8038 9.830975 AGCTTTGTAAACTTTGACCAATTTTAT 57.169 25.926 0.00 0.00 0.00 1.40
3052 8039 9.660180 AAGCTTTGTAAACTTTGACCAATTTTA 57.340 25.926 0.00 0.00 0.00 1.52
3053 8040 8.450180 CAAGCTTTGTAAACTTTGACCAATTTT 58.550 29.630 0.00 0.00 0.00 1.82
3054 8041 7.065683 CCAAGCTTTGTAAACTTTGACCAATTT 59.934 33.333 0.00 0.00 0.00 1.82
3055 8042 6.538381 CCAAGCTTTGTAAACTTTGACCAATT 59.462 34.615 0.00 0.00 0.00 2.32
3056 8043 6.048509 CCAAGCTTTGTAAACTTTGACCAAT 58.951 36.000 0.00 0.00 0.00 3.16
3057 8044 5.415221 CCAAGCTTTGTAAACTTTGACCAA 58.585 37.500 0.00 0.00 0.00 3.67
3058 8045 4.679372 GCCAAGCTTTGTAAACTTTGACCA 60.679 41.667 0.00 0.00 0.00 4.02
3059 8046 3.802139 GCCAAGCTTTGTAAACTTTGACC 59.198 43.478 0.00 0.00 0.00 4.02
3060 8047 4.682787 AGCCAAGCTTTGTAAACTTTGAC 58.317 39.130 0.00 0.00 33.89 3.18
3082 8069 3.327626 TCGCGTATTAGCTTTGGTCAAA 58.672 40.909 5.77 0.00 34.40 2.69
3083 8070 2.962125 TCGCGTATTAGCTTTGGTCAA 58.038 42.857 5.77 0.00 34.40 3.18
3084 8071 2.658373 TCGCGTATTAGCTTTGGTCA 57.342 45.000 5.77 0.00 34.40 4.02
3085 8072 2.928116 AGTTCGCGTATTAGCTTTGGTC 59.072 45.455 5.77 0.00 34.40 4.02
3086 8073 2.968675 AGTTCGCGTATTAGCTTTGGT 58.031 42.857 5.77 0.00 34.40 3.67
3087 8074 5.459110 TTTAGTTCGCGTATTAGCTTTGG 57.541 39.130 5.77 0.00 34.40 3.28
3088 8075 9.480538 TTTTATTTAGTTCGCGTATTAGCTTTG 57.519 29.630 5.77 0.00 34.40 2.77
3090 8077 9.481800 GTTTTTATTTAGTTCGCGTATTAGCTT 57.518 29.630 5.77 0.00 34.40 3.74
3091 8078 7.842721 CGTTTTTATTTAGTTCGCGTATTAGCT 59.157 33.333 5.77 0.00 34.40 3.32
3092 8079 7.109259 CCGTTTTTATTTAGTTCGCGTATTAGC 59.891 37.037 5.77 0.00 0.00 3.09
3093 8080 8.320295 TCCGTTTTTATTTAGTTCGCGTATTAG 58.680 33.333 5.77 0.00 0.00 1.73
3094 8081 8.179148 TCCGTTTTTATTTAGTTCGCGTATTA 57.821 30.769 5.77 0.00 0.00 0.98
3095 8082 7.059448 TCCGTTTTTATTTAGTTCGCGTATT 57.941 32.000 5.77 0.00 0.00 1.89
3096 8083 6.237915 CCTCCGTTTTTATTTAGTTCGCGTAT 60.238 38.462 5.77 0.00 0.00 3.06
3097 8084 5.062058 CCTCCGTTTTTATTTAGTTCGCGTA 59.938 40.000 5.77 0.00 0.00 4.42
3098 8085 4.143052 CCTCCGTTTTTATTTAGTTCGCGT 60.143 41.667 5.77 0.00 0.00 6.01
3099 8086 4.328667 CCTCCGTTTTTATTTAGTTCGCG 58.671 43.478 0.00 0.00 0.00 5.87
3100 8087 4.392754 TCCCTCCGTTTTTATTTAGTTCGC 59.607 41.667 0.00 0.00 0.00 4.70
3101 8088 5.640783 ACTCCCTCCGTTTTTATTTAGTTCG 59.359 40.000 0.00 0.00 0.00 3.95
3102 8089 7.821359 AGTACTCCCTCCGTTTTTATTTAGTTC 59.179 37.037 0.00 0.00 0.00 3.01
3103 8090 7.683578 AGTACTCCCTCCGTTTTTATTTAGTT 58.316 34.615 0.00 0.00 0.00 2.24
3104 8091 7.250032 AGTACTCCCTCCGTTTTTATTTAGT 57.750 36.000 0.00 0.00 0.00 2.24
3105 8092 7.605309 ACAAGTACTCCCTCCGTTTTTATTTAG 59.395 37.037 0.00 0.00 0.00 1.85
3106 8093 7.388500 CACAAGTACTCCCTCCGTTTTTATTTA 59.612 37.037 0.00 0.00 0.00 1.40
3107 8094 6.206048 CACAAGTACTCCCTCCGTTTTTATTT 59.794 38.462 0.00 0.00 0.00 1.40
3108 8095 5.704053 CACAAGTACTCCCTCCGTTTTTATT 59.296 40.000 0.00 0.00 0.00 1.40
3109 8096 5.012354 TCACAAGTACTCCCTCCGTTTTTAT 59.988 40.000 0.00 0.00 0.00 1.40
3110 8097 4.344679 TCACAAGTACTCCCTCCGTTTTTA 59.655 41.667 0.00 0.00 0.00 1.52
3111 8098 3.135167 TCACAAGTACTCCCTCCGTTTTT 59.865 43.478 0.00 0.00 0.00 1.94
3112 8099 2.701951 TCACAAGTACTCCCTCCGTTTT 59.298 45.455 0.00 0.00 0.00 2.43
3113 8100 2.299297 CTCACAAGTACTCCCTCCGTTT 59.701 50.000 0.00 0.00 0.00 3.60
3114 8101 1.893801 CTCACAAGTACTCCCTCCGTT 59.106 52.381 0.00 0.00 0.00 4.44
3115 8102 1.075050 TCTCACAAGTACTCCCTCCGT 59.925 52.381 0.00 0.00 0.00 4.69
3116 8103 1.835494 TCTCACAAGTACTCCCTCCG 58.165 55.000 0.00 0.00 0.00 4.63
3117 8104 4.618920 TTTTCTCACAAGTACTCCCTCC 57.381 45.455 0.00 0.00 0.00 4.30
3118 8105 7.228706 TGAAAATTTTCTCACAAGTACTCCCTC 59.771 37.037 26.73 0.52 38.02 4.30
3119 8106 7.013369 GTGAAAATTTTCTCACAAGTACTCCCT 59.987 37.037 26.73 0.00 41.35 4.20
3120 8107 7.139392 GTGAAAATTTTCTCACAAGTACTCCC 58.861 38.462 26.73 1.21 41.35 4.30
3121 8108 7.703328 TGTGAAAATTTTCTCACAAGTACTCC 58.297 34.615 26.73 1.79 46.74 3.85
3152 8139 9.889128 TTTGAAAAGAAGTCAAAGGATCATTTT 57.111 25.926 1.88 0.00 39.46 1.82
3153 8140 9.889128 TTTTGAAAAGAAGTCAAAGGATCATTT 57.111 25.926 0.00 0.00 43.76 2.32
3154 8141 9.889128 TTTTTGAAAAGAAGTCAAAGGATCATT 57.111 25.926 0.00 0.00 43.76 2.57
3181 8168 9.520204 CACACTATTTTGACTGAAAATTTGTCT 57.480 29.630 8.19 0.00 40.73 3.41
3182 8169 9.515020 TCACACTATTTTGACTGAAAATTTGTC 57.485 29.630 0.00 0.00 40.73 3.18
3183 8170 9.868277 TTCACACTATTTTGACTGAAAATTTGT 57.132 25.926 0.00 0.00 40.73 2.83
3189 8176 9.554395 TCACTATTCACACTATTTTGACTGAAA 57.446 29.630 0.00 0.00 0.00 2.69
3190 8177 8.988934 GTCACTATTCACACTATTTTGACTGAA 58.011 33.333 0.00 0.00 0.00 3.02
3191 8178 7.602644 GGTCACTATTCACACTATTTTGACTGA 59.397 37.037 0.00 0.00 33.05 3.41
3192 8179 7.604164 AGGTCACTATTCACACTATTTTGACTG 59.396 37.037 0.00 0.00 33.05 3.51
3193 8180 7.680730 AGGTCACTATTCACACTATTTTGACT 58.319 34.615 0.00 0.00 33.05 3.41
3194 8181 7.907214 AGGTCACTATTCACACTATTTTGAC 57.093 36.000 0.00 0.00 0.00 3.18
3201 8188 9.582648 TGCTATTATAGGTCACTATTCACACTA 57.417 33.333 1.12 0.00 40.35 2.74
3202 8189 8.478775 TGCTATTATAGGTCACTATTCACACT 57.521 34.615 1.12 0.00 40.35 3.55
3203 8190 9.542462 TTTGCTATTATAGGTCACTATTCACAC 57.458 33.333 1.12 0.00 40.35 3.82
3242 8229 5.432645 GAAAAACCAACATCCAGGGAAAAA 58.567 37.500 0.00 0.00 0.00 1.94
3243 8230 4.442192 CGAAAAACCAACATCCAGGGAAAA 60.442 41.667 0.00 0.00 0.00 2.29
3244 8231 3.068873 CGAAAAACCAACATCCAGGGAAA 59.931 43.478 0.00 0.00 0.00 3.13
3245 8232 2.625790 CGAAAAACCAACATCCAGGGAA 59.374 45.455 0.00 0.00 0.00 3.97
3246 8233 2.235016 CGAAAAACCAACATCCAGGGA 58.765 47.619 0.00 0.00 0.00 4.20
3247 8234 1.960689 ACGAAAAACCAACATCCAGGG 59.039 47.619 0.00 0.00 0.00 4.45
3248 8235 2.621055 TCACGAAAAACCAACATCCAGG 59.379 45.455 0.00 0.00 0.00 4.45
3249 8236 3.980646 TCACGAAAAACCAACATCCAG 57.019 42.857 0.00 0.00 0.00 3.86
3250 8237 4.720649 TTTCACGAAAAACCAACATCCA 57.279 36.364 0.00 0.00 0.00 3.41
3251 8238 6.597262 AATTTTCACGAAAAACCAACATCC 57.403 33.333 8.88 0.00 42.71 3.51
3276 8263 9.726438 ACTTGACTTTGTTTTGCTCTAGTATAT 57.274 29.630 0.00 0.00 0.00 0.86
3277 8264 9.555727 AACTTGACTTTGTTTTGCTCTAGTATA 57.444 29.630 0.00 0.00 0.00 1.47
3278 8265 8.451908 AACTTGACTTTGTTTTGCTCTAGTAT 57.548 30.769 0.00 0.00 0.00 2.12
3279 8266 7.859325 AACTTGACTTTGTTTTGCTCTAGTA 57.141 32.000 0.00 0.00 0.00 1.82
3280 8267 6.759497 AACTTGACTTTGTTTTGCTCTAGT 57.241 33.333 0.00 0.00 0.00 2.57
3281 8268 9.736023 ATTAAACTTGACTTTGTTTTGCTCTAG 57.264 29.630 0.00 0.00 37.53 2.43
3282 8269 9.730420 GATTAAACTTGACTTTGTTTTGCTCTA 57.270 29.630 0.00 0.00 37.53 2.43
3283 8270 8.470002 AGATTAAACTTGACTTTGTTTTGCTCT 58.530 29.630 0.00 0.00 37.53 4.09
3284 8271 8.634475 AGATTAAACTTGACTTTGTTTTGCTC 57.366 30.769 0.00 0.00 37.53 4.26
3359 8346 5.841237 CCTGGGTGTATATCCCTATATGAGG 59.159 48.000 14.37 9.19 44.84 3.86
3360 8347 6.683537 TCCTGGGTGTATATCCCTATATGAG 58.316 44.000 14.37 5.25 44.84 2.90
3361 8348 6.684241 TCCTGGGTGTATATCCCTATATGA 57.316 41.667 14.37 4.54 44.84 2.15
3362 8349 6.099845 GGTTCCTGGGTGTATATCCCTATATG 59.900 46.154 14.37 2.88 44.84 1.78
3363 8350 6.210522 GGTTCCTGGGTGTATATCCCTATAT 58.789 44.000 14.37 0.00 44.84 0.86
3364 8351 5.078147 TGGTTCCTGGGTGTATATCCCTATA 59.922 44.000 14.37 1.27 44.84 1.31
3365 8352 4.140301 TGGTTCCTGGGTGTATATCCCTAT 60.140 45.833 14.37 0.00 44.84 2.57
3366 8353 3.210305 TGGTTCCTGGGTGTATATCCCTA 59.790 47.826 14.37 0.00 44.84 3.53
3367 8354 2.021441 TGGTTCCTGGGTGTATATCCCT 60.021 50.000 14.37 0.00 44.84 4.20
3368 8355 2.414612 TGGTTCCTGGGTGTATATCCC 58.585 52.381 8.49 8.49 44.81 3.85
3369 8356 4.461198 CTTTGGTTCCTGGGTGTATATCC 58.539 47.826 0.00 0.00 0.00 2.59
3370 8357 4.461198 CCTTTGGTTCCTGGGTGTATATC 58.539 47.826 0.00 0.00 0.00 1.63
3371 8358 3.204382 CCCTTTGGTTCCTGGGTGTATAT 59.796 47.826 0.00 0.00 35.13 0.86
3372 8359 2.578940 CCCTTTGGTTCCTGGGTGTATA 59.421 50.000 0.00 0.00 35.13 1.47
3373 8360 1.357761 CCCTTTGGTTCCTGGGTGTAT 59.642 52.381 0.00 0.00 35.13 2.29
3374 8361 0.774908 CCCTTTGGTTCCTGGGTGTA 59.225 55.000 0.00 0.00 35.13 2.90
3375 8362 1.541672 CCCTTTGGTTCCTGGGTGT 59.458 57.895 0.00 0.00 35.13 4.16
3376 8363 4.519610 CCCTTTGGTTCCTGGGTG 57.480 61.111 0.00 0.00 35.13 4.61
3377 8364 4.116977 ACCCTTTGGTTCCTGGGT 57.883 55.556 12.27 12.27 44.75 4.51
3378 8365 1.228862 CCACCCTTTGGTTCCTGGG 60.229 63.158 11.32 11.32 44.75 4.45
3379 8366 4.519610 CCACCCTTTGGTTCCTGG 57.480 61.111 0.00 0.00 44.75 4.45
3387 8374 1.039856 CAACCAGGAACCACCCTTTG 58.960 55.000 0.00 0.00 40.05 2.77
3388 8375 0.634465 ACAACCAGGAACCACCCTTT 59.366 50.000 0.00 0.00 40.05 3.11
3389 8376 1.525175 TACAACCAGGAACCACCCTT 58.475 50.000 0.00 0.00 40.05 3.95
3390 8377 1.755200 ATACAACCAGGAACCACCCT 58.245 50.000 0.00 0.00 40.05 4.34
3391 8378 3.945640 ATATACAACCAGGAACCACCC 57.054 47.619 0.00 0.00 40.05 4.61
3392 8379 5.121105 GTGTATATACAACCAGGAACCACC 58.879 45.833 17.07 0.00 38.04 4.61
3393 8380 5.121105 GGTGTATATACAACCAGGAACCAC 58.879 45.833 18.58 2.04 37.94 4.16
3394 8381 5.362105 GGTGTATATACAACCAGGAACCA 57.638 43.478 18.58 0.00 37.94 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.