Multiple sequence alignment - TraesCS5A01G518300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G518300 chr5A 100.000 3014 0 0 1 3014 680620994 680617981 0.000000e+00 5566.0
1 TraesCS5A01G518300 chr5A 88.835 206 20 1 2503 2708 680618193 680617991 2.000000e-62 250.0
2 TraesCS5A01G518300 chr5A 88.835 206 20 1 2802 3004 680618492 680618287 2.000000e-62 250.0
3 TraesCS5A01G518300 chr5A 84.667 150 23 0 106 255 666528539 666528688 2.090000e-32 150.0
4 TraesCS5A01G518300 chr5A 100.000 47 0 0 3311 3357 680617684 680617638 1.660000e-13 87.9
5 TraesCS5A01G518300 chr4D 89.087 1008 59 17 871 1838 499619858 499618862 0.000000e+00 1205.0
6 TraesCS5A01G518300 chr4D 92.663 627 39 7 1867 2491 499618779 499618158 0.000000e+00 896.0
7 TraesCS5A01G518300 chr4D 90.018 551 33 12 271 810 499620429 499619890 0.000000e+00 693.0
8 TraesCS5A01G518300 chr4D 91.739 460 34 4 2047 2505 499616502 499616046 1.310000e-178 636.0
9 TraesCS5A01G518300 chr4D 86.305 387 38 10 2624 3004 499618268 499617891 1.120000e-109 407.0
10 TraesCS5A01G518300 chr4D 90.217 184 17 1 2772 2954 499615903 499615720 4.330000e-59 239.0
11 TraesCS5A01G518300 chr4D 95.745 47 2 0 3311 3357 499615692 499615646 3.590000e-10 76.8
12 TraesCS5A01G518300 chr4B 90.837 633 51 7 1867 2497 642700718 642700091 0.000000e+00 841.0
13 TraesCS5A01G518300 chr4B 81.110 937 86 50 345 1226 642702134 642701234 0.000000e+00 665.0
14 TraesCS5A01G518300 chr4B 95.930 344 13 1 1493 1835 642701154 642700811 1.050000e-154 556.0
15 TraesCS5A01G518300 chr4B 79.211 279 40 7 1 262 577009927 577010204 9.570000e-41 178.0
16 TraesCS5A01G518300 chr4B 81.429 210 21 6 2624 2815 642700209 642700000 4.480000e-34 156.0
17 TraesCS5A01G518300 chr5D 79.623 265 46 8 1 262 383742366 383742625 2.060000e-42 183.0
18 TraesCS5A01G518300 chr5D 79.554 269 40 6 7 262 333399941 333399675 9.570000e-41 178.0
19 TraesCS5A01G518300 chr5D 80.000 195 28 7 78 262 320369910 320369717 2.100000e-27 134.0
20 TraesCS5A01G518300 chr5D 78.680 197 29 4 78 262 371631358 371631163 5.880000e-23 119.0
21 TraesCS5A01G518300 chr3D 78.846 260 53 2 4 262 537407070 537406812 1.240000e-39 174.0
22 TraesCS5A01G518300 chr3D 80.288 208 24 4 4 200 555903730 555903529 1.260000e-29 141.0
23 TraesCS5A01G518300 chr3B 78.810 269 44 6 4 262 637531777 637531512 5.760000e-38 169.0
24 TraesCS5A01G518300 chr3B 83.019 106 12 2 4 109 738909146 738909047 1.280000e-14 91.6
25 TraesCS5A01G518300 chr2A 80.102 196 26 4 78 262 173839601 173839794 2.100000e-27 134.0
26 TraesCS5A01G518300 chr1A 79.688 192 25 8 83 262 298637857 298638046 3.520000e-25 126.0
27 TraesCS5A01G518300 chr1A 78.974 195 29 5 78 261 373828035 373827842 4.550000e-24 122.0
28 TraesCS5A01G518300 chr1D 79.885 174 26 8 4 175 397633484 397633318 5.880000e-23 119.0
29 TraesCS5A01G518300 chr1B 81.119 143 19 5 31 172 645532685 645532550 1.270000e-19 108.0
30 TraesCS5A01G518300 chr7A 77.966 177 29 5 1 167 19169293 19169469 5.930000e-18 102.0
31 TraesCS5A01G518300 chr2B 78.667 150 30 2 4 152 604939777 604939629 7.670000e-17 99.0
32 TraesCS5A01G518300 chr7B 86.538 52 6 1 114 164 569425660 569425711 4.680000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G518300 chr5A 680617638 680620994 3356 True 1538.475000 5566 94.417500 1 3357 4 chr5A.!!$R1 3356
1 TraesCS5A01G518300 chr4D 499615646 499620429 4783 True 593.257143 1205 90.824857 271 3357 7 chr4D.!!$R1 3086
2 TraesCS5A01G518300 chr4B 642700000 642702134 2134 True 554.500000 841 87.326500 345 2815 4 chr4B.!!$R1 2470

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.030101 CGACGGAGGAGATGAGCTTC 59.970 60.0 0.0 0.0 0.0 3.86 F
32 33 0.030101 GACGGAGGAGATGAGCTTCG 59.970 60.0 0.0 0.0 0.0 3.79 F
972 1041 0.036010 ACATCCCAAGAACCAGAGCG 60.036 55.0 0.0 0.0 0.0 5.03 F
1490 1590 0.107848 GGTTGGGGATCAGTGGTACG 60.108 60.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1415 1515 0.038159 GGAGGAGGAGAACACGTGTG 60.038 60.0 24.16 0.00 0.0 3.82 R
1838 1942 0.318869 TTGCGGGTGTACTGTACGTG 60.319 55.0 12.87 4.29 0.0 4.49 R
1839 1943 0.388659 TTTGCGGGTGTACTGTACGT 59.611 50.0 12.87 0.00 0.0 3.57 R
2982 5124 0.389426 GCTAGAAACACTCCGCCGAA 60.389 55.0 0.00 0.00 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.516460 CGGTCCGACGGAGGAGAT 60.516 66.667 18.98 0.00 41.68 2.75
25 26 2.835705 CGGTCCGACGGAGGAGATG 61.836 68.421 18.98 0.00 41.68 2.90
26 27 1.453379 GGTCCGACGGAGGAGATGA 60.453 63.158 18.98 0.00 41.68 2.92
27 28 1.448922 GGTCCGACGGAGGAGATGAG 61.449 65.000 18.98 0.00 41.68 2.90
28 29 1.824329 TCCGACGGAGGAGATGAGC 60.824 63.158 13.88 0.00 34.92 4.26
29 30 1.826054 CCGACGGAGGAGATGAGCT 60.826 63.158 8.64 0.00 0.00 4.09
30 31 1.388065 CCGACGGAGGAGATGAGCTT 61.388 60.000 8.64 0.00 0.00 3.74
31 32 0.030101 CGACGGAGGAGATGAGCTTC 59.970 60.000 0.00 0.00 0.00 3.86
32 33 0.030101 GACGGAGGAGATGAGCTTCG 59.970 60.000 0.00 0.00 0.00 3.79
33 34 1.361993 CGGAGGAGATGAGCTTCGG 59.638 63.158 0.00 0.00 0.00 4.30
34 35 1.103987 CGGAGGAGATGAGCTTCGGA 61.104 60.000 0.00 0.00 0.00 4.55
35 36 0.387565 GGAGGAGATGAGCTTCGGAC 59.612 60.000 0.00 0.00 0.00 4.79
36 37 0.387565 GAGGAGATGAGCTTCGGACC 59.612 60.000 0.00 0.00 0.00 4.46
37 38 0.324738 AGGAGATGAGCTTCGGACCA 60.325 55.000 0.00 0.00 0.00 4.02
38 39 0.755686 GGAGATGAGCTTCGGACCAT 59.244 55.000 0.00 0.00 0.00 3.55
39 40 1.270041 GGAGATGAGCTTCGGACCATC 60.270 57.143 3.27 3.27 36.56 3.51
40 41 0.387202 AGATGAGCTTCGGACCATCG 59.613 55.000 5.47 0.00 40.06 3.84
41 42 0.598680 GATGAGCTTCGGACCATCGG 60.599 60.000 0.00 0.00 0.00 4.18
42 43 1.043116 ATGAGCTTCGGACCATCGGA 61.043 55.000 0.00 0.00 0.00 4.55
43 44 1.043116 TGAGCTTCGGACCATCGGAT 61.043 55.000 0.00 0.00 0.00 4.18
44 45 0.105039 GAGCTTCGGACCATCGGATT 59.895 55.000 0.00 0.00 0.00 3.01
45 46 0.541863 AGCTTCGGACCATCGGATTT 59.458 50.000 0.00 0.00 0.00 2.17
46 47 0.657840 GCTTCGGACCATCGGATTTG 59.342 55.000 0.00 0.00 0.00 2.32
47 48 1.742411 GCTTCGGACCATCGGATTTGA 60.742 52.381 0.00 0.00 0.00 2.69
48 49 2.205074 CTTCGGACCATCGGATTTGAG 58.795 52.381 0.00 0.00 0.00 3.02
49 50 0.464036 TCGGACCATCGGATTTGAGG 59.536 55.000 0.00 0.00 0.00 3.86
50 51 0.532862 CGGACCATCGGATTTGAGGG 60.533 60.000 0.00 0.00 45.16 4.30
51 52 0.819666 GGACCATCGGATTTGAGGGC 60.820 60.000 0.00 0.00 43.51 5.19
52 53 1.153168 ACCATCGGATTTGAGGGCG 60.153 57.895 0.00 0.00 43.51 6.13
53 54 1.153168 CCATCGGATTTGAGGGCGT 60.153 57.895 0.00 0.00 32.42 5.68
54 55 0.748005 CCATCGGATTTGAGGGCGTT 60.748 55.000 0.00 0.00 32.42 4.84
55 56 1.094785 CATCGGATTTGAGGGCGTTT 58.905 50.000 0.00 0.00 0.00 3.60
56 57 1.472480 CATCGGATTTGAGGGCGTTTT 59.528 47.619 0.00 0.00 0.00 2.43
57 58 1.161843 TCGGATTTGAGGGCGTTTTC 58.838 50.000 0.00 0.00 0.00 2.29
59 60 0.170339 GGATTTGAGGGCGTTTTCGG 59.830 55.000 0.00 0.00 44.29 4.30
76 77 4.802051 GCTGGAGCCCATTCGCCA 62.802 66.667 0.00 0.00 34.72 5.69
77 78 2.515523 CTGGAGCCCATTCGCCAG 60.516 66.667 0.00 0.00 45.16 4.85
78 79 3.329889 TGGAGCCCATTCGCCAGT 61.330 61.111 0.00 0.00 32.15 4.00
79 80 2.514824 GGAGCCCATTCGCCAGTC 60.515 66.667 0.00 0.00 0.00 3.51
80 81 2.514824 GAGCCCATTCGCCAGTCC 60.515 66.667 0.00 0.00 0.00 3.85
81 82 3.329542 GAGCCCATTCGCCAGTCCA 62.330 63.158 0.00 0.00 0.00 4.02
82 83 2.361104 GCCCATTCGCCAGTCCAA 60.361 61.111 0.00 0.00 0.00 3.53
83 84 2.700773 GCCCATTCGCCAGTCCAAC 61.701 63.158 0.00 0.00 0.00 3.77
84 85 2.398554 CCCATTCGCCAGTCCAACG 61.399 63.158 0.00 0.00 0.00 4.10
85 86 1.671054 CCATTCGCCAGTCCAACGT 60.671 57.895 0.00 0.00 0.00 3.99
86 87 1.497278 CATTCGCCAGTCCAACGTG 59.503 57.895 0.00 0.00 0.00 4.49
87 88 1.671054 ATTCGCCAGTCCAACGTGG 60.671 57.895 0.00 0.00 39.43 4.94
119 120 4.557385 CACCCCCGTATTCGCCCC 62.557 72.222 0.00 0.00 35.54 5.80
121 122 3.566210 CCCCCGTATTCGCCCCAT 61.566 66.667 0.00 0.00 35.54 4.00
122 123 2.218454 CCCCCGTATTCGCCCCATA 61.218 63.158 0.00 0.00 35.54 2.74
123 124 1.559065 CCCCCGTATTCGCCCCATAT 61.559 60.000 0.00 0.00 35.54 1.78
124 125 0.326927 CCCCGTATTCGCCCCATATT 59.673 55.000 0.00 0.00 35.54 1.28
125 126 1.271707 CCCCGTATTCGCCCCATATTT 60.272 52.381 0.00 0.00 35.54 1.40
126 127 1.810151 CCCGTATTCGCCCCATATTTG 59.190 52.381 0.00 0.00 35.54 2.32
127 128 1.810151 CCGTATTCGCCCCATATTTGG 59.190 52.381 0.00 0.00 38.02 3.28
128 129 2.551287 CCGTATTCGCCCCATATTTGGA 60.551 50.000 3.41 0.00 39.48 3.53
129 130 2.482721 CGTATTCGCCCCATATTTGGAC 59.517 50.000 3.41 0.00 46.92 4.02
130 131 3.751518 GTATTCGCCCCATATTTGGACT 58.248 45.455 3.41 0.00 46.92 3.85
131 132 2.051334 TTCGCCCCATATTTGGACTG 57.949 50.000 3.41 0.00 46.92 3.51
132 133 1.208706 TCGCCCCATATTTGGACTGA 58.791 50.000 3.41 0.00 46.92 3.41
133 134 1.562008 TCGCCCCATATTTGGACTGAA 59.438 47.619 3.41 0.00 46.92 3.02
134 135 2.174639 TCGCCCCATATTTGGACTGAAT 59.825 45.455 3.41 0.00 46.92 2.57
135 136 3.392947 TCGCCCCATATTTGGACTGAATA 59.607 43.478 3.41 0.00 46.92 1.75
136 137 4.042809 TCGCCCCATATTTGGACTGAATAT 59.957 41.667 3.41 0.00 46.92 1.28
137 138 4.156556 CGCCCCATATTTGGACTGAATATG 59.843 45.833 3.41 8.97 46.92 1.78
138 139 5.324409 GCCCCATATTTGGACTGAATATGA 58.676 41.667 14.97 0.00 46.92 2.15
139 140 5.416952 GCCCCATATTTGGACTGAATATGAG 59.583 44.000 14.97 5.33 46.92 2.90
140 141 5.948162 CCCCATATTTGGACTGAATATGAGG 59.052 44.000 14.97 9.59 46.92 3.86
141 142 5.948162 CCCATATTTGGACTGAATATGAGGG 59.052 44.000 14.97 7.68 46.92 4.30
142 143 5.948162 CCATATTTGGACTGAATATGAGGGG 59.052 44.000 14.97 0.00 46.92 4.79
143 144 6.467775 CCATATTTGGACTGAATATGAGGGGT 60.468 42.308 14.97 0.00 46.92 4.95
144 145 3.931907 TTGGACTGAATATGAGGGGTG 57.068 47.619 0.00 0.00 0.00 4.61
145 146 1.490490 TGGACTGAATATGAGGGGTGC 59.510 52.381 0.00 0.00 0.00 5.01
146 147 1.771255 GGACTGAATATGAGGGGTGCT 59.229 52.381 0.00 0.00 0.00 4.40
147 148 2.486191 GGACTGAATATGAGGGGTGCTG 60.486 54.545 0.00 0.00 0.00 4.41
148 149 1.492176 ACTGAATATGAGGGGTGCTGG 59.508 52.381 0.00 0.00 0.00 4.85
149 150 1.492176 CTGAATATGAGGGGTGCTGGT 59.508 52.381 0.00 0.00 0.00 4.00
150 151 1.490490 TGAATATGAGGGGTGCTGGTC 59.510 52.381 0.00 0.00 0.00 4.02
151 152 1.490490 GAATATGAGGGGTGCTGGTCA 59.510 52.381 0.00 0.00 0.00 4.02
152 153 1.135094 ATATGAGGGGTGCTGGTCAG 58.865 55.000 0.00 0.00 0.00 3.51
153 154 0.252696 TATGAGGGGTGCTGGTCAGT 60.253 55.000 0.00 0.00 0.00 3.41
154 155 1.557269 ATGAGGGGTGCTGGTCAGTC 61.557 60.000 0.00 0.00 0.00 3.51
155 156 2.930562 AGGGGTGCTGGTCAGTCC 60.931 66.667 0.00 3.45 0.00 3.85
156 157 4.394712 GGGGTGCTGGTCAGTCCG 62.395 72.222 0.00 0.00 39.52 4.79
157 158 4.394712 GGGTGCTGGTCAGTCCGG 62.395 72.222 0.00 0.00 45.06 5.14
158 159 3.311110 GGTGCTGGTCAGTCCGGA 61.311 66.667 0.00 0.00 45.09 5.14
159 160 2.048127 GTGCTGGTCAGTCCGGAC 60.048 66.667 27.67 27.67 45.09 4.79
160 161 3.680786 TGCTGGTCAGTCCGGACG 61.681 66.667 28.26 22.00 45.09 4.79
161 162 3.681835 GCTGGTCAGTCCGGACGT 61.682 66.667 28.26 14.36 45.09 4.34
162 163 3.048602 CTGGTCAGTCCGGACGTT 58.951 61.111 28.26 9.98 45.09 3.99
163 164 1.366366 CTGGTCAGTCCGGACGTTT 59.634 57.895 28.26 9.15 45.09 3.60
164 165 0.944311 CTGGTCAGTCCGGACGTTTG 60.944 60.000 28.26 20.94 45.09 2.93
165 166 1.364901 GGTCAGTCCGGACGTTTGA 59.635 57.895 28.26 22.86 38.70 2.69
166 167 0.666577 GGTCAGTCCGGACGTTTGAG 60.667 60.000 28.26 14.85 38.70 3.02
167 168 0.313043 GTCAGTCCGGACGTTTGAGA 59.687 55.000 28.26 16.75 36.20 3.27
168 169 0.596577 TCAGTCCGGACGTTTGAGAG 59.403 55.000 28.26 11.91 36.20 3.20
169 170 0.388649 CAGTCCGGACGTTTGAGAGG 60.389 60.000 28.26 7.30 36.20 3.69
170 171 1.737008 GTCCGGACGTTTGAGAGGC 60.737 63.158 20.85 0.00 0.00 4.70
171 172 2.434359 CCGGACGTTTGAGAGGCC 60.434 66.667 0.00 0.00 0.00 5.19
172 173 2.434359 CGGACGTTTGAGAGGCCC 60.434 66.667 0.00 0.00 0.00 5.80
173 174 2.434359 GGACGTTTGAGAGGCCCG 60.434 66.667 0.00 0.00 0.00 6.13
174 175 2.342648 GACGTTTGAGAGGCCCGT 59.657 61.111 0.00 0.00 0.00 5.28
175 176 1.737008 GACGTTTGAGAGGCCCGTC 60.737 63.158 11.73 11.73 40.71 4.79
176 177 2.156051 GACGTTTGAGAGGCCCGTCT 62.156 60.000 17.69 7.64 43.24 4.18
177 178 0.896940 ACGTTTGAGAGGCCCGTCTA 60.897 55.000 0.00 0.00 0.00 2.59
178 179 0.179134 CGTTTGAGAGGCCCGTCTAG 60.179 60.000 0.00 0.00 0.00 2.43
179 180 0.175989 GTTTGAGAGGCCCGTCTAGG 59.824 60.000 0.00 0.00 40.63 3.02
180 181 0.252103 TTTGAGAGGCCCGTCTAGGT 60.252 55.000 0.00 0.00 38.74 3.08
181 182 0.683504 TTGAGAGGCCCGTCTAGGTC 60.684 60.000 0.00 0.00 38.74 3.85
182 183 1.076923 GAGAGGCCCGTCTAGGTCA 60.077 63.158 0.00 0.00 38.74 4.02
183 184 0.683504 GAGAGGCCCGTCTAGGTCAA 60.684 60.000 0.00 0.00 38.74 3.18
184 185 0.252103 AGAGGCCCGTCTAGGTCAAA 60.252 55.000 0.00 0.00 38.74 2.69
185 186 0.611714 GAGGCCCGTCTAGGTCAAAA 59.388 55.000 0.00 0.00 38.74 2.44
186 187 1.002773 GAGGCCCGTCTAGGTCAAAAA 59.997 52.381 0.00 0.00 38.74 1.94
206 207 3.802948 AATCATGACCGAGTAGTGACC 57.197 47.619 0.00 0.00 0.00 4.02
207 208 1.092348 TCATGACCGAGTAGTGACCG 58.908 55.000 0.00 0.00 0.00 4.79
208 209 0.100682 CATGACCGAGTAGTGACCGG 59.899 60.000 0.00 0.00 42.06 5.28
209 210 1.035932 ATGACCGAGTAGTGACCGGG 61.036 60.000 6.32 0.00 41.21 5.73
210 211 3.061260 GACCGAGTAGTGACCGGGC 62.061 68.421 6.32 1.57 41.21 6.13
211 212 4.189188 CCGAGTAGTGACCGGGCG 62.189 72.222 6.32 0.00 36.39 6.13
212 213 4.189188 CGAGTAGTGACCGGGCGG 62.189 72.222 6.32 0.00 42.03 6.13
213 214 4.509737 GAGTAGTGACCGGGCGGC 62.510 72.222 6.32 0.00 39.32 6.53
231 232 4.323477 CTGGCCGGACGTTTGGGA 62.323 66.667 5.28 0.00 0.00 4.37
232 233 4.629523 TGGCCGGACGTTTGGGAC 62.630 66.667 5.05 4.47 0.00 4.46
248 249 5.386958 TTGGGACGAATATAAGAGATCCG 57.613 43.478 0.00 0.00 0.00 4.18
249 250 3.762288 TGGGACGAATATAAGAGATCCGG 59.238 47.826 0.00 0.00 0.00 5.14
250 251 3.762823 GGGACGAATATAAGAGATCCGGT 59.237 47.826 0.00 0.00 0.00 5.28
251 252 4.220163 GGGACGAATATAAGAGATCCGGTT 59.780 45.833 0.00 0.00 0.00 4.44
252 253 5.162075 GGACGAATATAAGAGATCCGGTTG 58.838 45.833 0.00 0.00 0.00 3.77
253 254 5.278858 GGACGAATATAAGAGATCCGGTTGT 60.279 44.000 0.00 0.00 0.00 3.32
254 255 6.072286 GGACGAATATAAGAGATCCGGTTGTA 60.072 42.308 0.00 0.00 0.00 2.41
255 256 6.910995 ACGAATATAAGAGATCCGGTTGTAG 58.089 40.000 0.00 0.00 0.00 2.74
256 257 6.713903 ACGAATATAAGAGATCCGGTTGTAGA 59.286 38.462 0.00 0.00 0.00 2.59
257 258 7.393796 ACGAATATAAGAGATCCGGTTGTAGAT 59.606 37.037 0.00 0.00 0.00 1.98
258 259 7.698550 CGAATATAAGAGATCCGGTTGTAGATG 59.301 40.741 0.00 0.00 0.00 2.90
259 260 3.460857 AAGAGATCCGGTTGTAGATGC 57.539 47.619 0.00 0.00 0.00 3.91
260 261 2.672098 AGAGATCCGGTTGTAGATGCT 58.328 47.619 0.00 0.00 0.00 3.79
261 262 2.625790 AGAGATCCGGTTGTAGATGCTC 59.374 50.000 0.00 0.00 0.00 4.26
262 263 1.689273 AGATCCGGTTGTAGATGCTCC 59.311 52.381 0.00 0.00 0.00 4.70
263 264 0.759346 ATCCGGTTGTAGATGCTCCC 59.241 55.000 0.00 0.00 0.00 4.30
264 265 0.616395 TCCGGTTGTAGATGCTCCCA 60.616 55.000 0.00 0.00 0.00 4.37
265 266 0.462047 CCGGTTGTAGATGCTCCCAC 60.462 60.000 0.00 0.00 0.00 4.61
266 267 0.249120 CGGTTGTAGATGCTCCCACA 59.751 55.000 0.00 0.00 0.00 4.17
267 268 1.739067 GGTTGTAGATGCTCCCACAC 58.261 55.000 0.00 0.00 0.00 3.82
268 269 1.679032 GGTTGTAGATGCTCCCACACC 60.679 57.143 0.00 0.00 0.00 4.16
269 270 1.279271 GTTGTAGATGCTCCCACACCT 59.721 52.381 0.00 0.00 0.00 4.00
270 271 1.195115 TGTAGATGCTCCCACACCTC 58.805 55.000 0.00 0.00 0.00 3.85
271 272 1.273267 TGTAGATGCTCCCACACCTCT 60.273 52.381 0.00 0.00 0.00 3.69
272 273 1.410882 GTAGATGCTCCCACACCTCTC 59.589 57.143 0.00 0.00 0.00 3.20
273 274 0.042431 AGATGCTCCCACACCTCTCT 59.958 55.000 0.00 0.00 0.00 3.10
274 275 0.908198 GATGCTCCCACACCTCTCTT 59.092 55.000 0.00 0.00 0.00 2.85
275 276 1.280421 GATGCTCCCACACCTCTCTTT 59.720 52.381 0.00 0.00 0.00 2.52
276 277 1.140312 TGCTCCCACACCTCTCTTTT 58.860 50.000 0.00 0.00 0.00 2.27
277 278 1.494721 TGCTCCCACACCTCTCTTTTT 59.505 47.619 0.00 0.00 0.00 1.94
303 304 1.386525 CCCGCAAAGCACATGCCTAT 61.387 55.000 0.00 0.00 43.38 2.57
306 307 2.294233 CCGCAAAGCACATGCCTATATT 59.706 45.455 0.00 0.00 43.38 1.28
307 308 3.243501 CCGCAAAGCACATGCCTATATTT 60.244 43.478 0.00 0.00 43.38 1.40
308 309 4.023279 CCGCAAAGCACATGCCTATATTTA 60.023 41.667 0.00 0.00 43.38 1.40
309 310 5.335897 CCGCAAAGCACATGCCTATATTTAT 60.336 40.000 0.00 0.00 43.38 1.40
310 311 6.128035 CCGCAAAGCACATGCCTATATTTATA 60.128 38.462 0.00 0.00 43.38 0.98
311 312 7.304735 CGCAAAGCACATGCCTATATTTATAA 58.695 34.615 0.00 0.00 43.38 0.98
318 319 9.410556 GCACATGCCTATATTTATAAGGTTTTG 57.589 33.333 0.00 0.00 34.31 2.44
424 425 6.537301 TCACTCGAAAGCGACCATAAATTAAT 59.463 34.615 0.00 0.00 42.51 1.40
451 454 8.541733 TTGTTTTATTTATCTGCGATAAAGCG 57.458 30.769 20.37 0.00 40.67 4.68
486 497 4.159135 CAGCTAGCCTGTTTCCATTGAAAT 59.841 41.667 12.13 0.00 42.20 2.17
504 515 7.881643 TTGAAATGAAAATGAAATACGTGGG 57.118 32.000 0.00 0.00 0.00 4.61
542 553 2.350007 CCCAAAACGACGTGTACCAATG 60.350 50.000 0.00 0.00 0.00 2.82
609 627 1.617850 AGCTGGAAGTCTGAGTCACAG 59.382 52.381 10.38 10.38 46.97 3.66
678 723 0.459237 CGCTCACAGGTCATCCTCAC 60.459 60.000 0.00 0.00 43.07 3.51
691 739 2.479650 CTCACCGTCGTCGACCTC 59.520 66.667 19.29 2.18 39.71 3.85
782 831 4.477975 CGCTGTCCGACCGTCCTC 62.478 72.222 0.00 0.00 40.02 3.71
822 871 2.151202 GAAACCCATTTCGCAGACAGA 58.849 47.619 0.00 0.00 35.18 3.41
826 875 2.766263 ACCCATTTCGCAGACAGAGATA 59.234 45.455 0.00 0.00 34.32 1.98
828 877 3.430790 CCCATTTCGCAGACAGAGATACA 60.431 47.826 0.00 0.00 34.32 2.29
829 878 4.375272 CCATTTCGCAGACAGAGATACAT 58.625 43.478 0.00 0.00 34.32 2.29
830 879 4.813161 CCATTTCGCAGACAGAGATACATT 59.187 41.667 0.00 0.00 34.32 2.71
832 881 6.183360 CCATTTCGCAGACAGAGATACATTTT 60.183 38.462 0.00 0.00 34.32 1.82
833 882 5.784750 TTCGCAGACAGAGATACATTTTG 57.215 39.130 0.00 0.00 34.32 2.44
834 883 3.618594 TCGCAGACAGAGATACATTTTGC 59.381 43.478 0.00 0.00 0.00 3.68
835 884 3.620374 CGCAGACAGAGATACATTTTGCT 59.380 43.478 0.00 0.00 0.00 3.91
836 885 4.260132 CGCAGACAGAGATACATTTTGCTC 60.260 45.833 0.00 0.00 0.00 4.26
837 886 4.874966 GCAGACAGAGATACATTTTGCTCT 59.125 41.667 0.00 0.00 38.19 4.09
838 887 6.045318 GCAGACAGAGATACATTTTGCTCTA 58.955 40.000 0.00 0.00 36.06 2.43
839 888 6.705381 GCAGACAGAGATACATTTTGCTCTAT 59.295 38.462 0.00 0.00 36.06 1.98
840 889 7.869937 GCAGACAGAGATACATTTTGCTCTATA 59.130 37.037 0.00 0.00 36.06 1.31
841 890 9.755804 CAGACAGAGATACATTTTGCTCTATAA 57.244 33.333 0.00 0.00 36.06 0.98
890 939 5.245531 TGTTGCTCTATAAAACACCAGAGG 58.754 41.667 0.00 0.00 35.98 3.69
891 940 3.873910 TGCTCTATAAAACACCAGAGGC 58.126 45.455 0.00 0.00 35.98 4.70
918 971 1.377725 CGGCCACCAAGCAAGATCT 60.378 57.895 2.24 0.00 0.00 2.75
919 972 0.962356 CGGCCACCAAGCAAGATCTT 60.962 55.000 2.24 0.88 0.00 2.40
920 973 1.678728 CGGCCACCAAGCAAGATCTTA 60.679 52.381 7.86 0.00 0.00 2.10
921 974 1.745653 GGCCACCAAGCAAGATCTTAC 59.254 52.381 7.86 1.97 0.00 2.34
938 1004 2.660189 TACTTTTTACCTCGGAGCCG 57.340 50.000 1.74 1.74 41.35 5.52
950 1019 2.202544 GAGCCGCACAGACTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
972 1041 0.036010 ACATCCCAAGAACCAGAGCG 60.036 55.000 0.00 0.00 0.00 5.03
1040 1109 4.738345 GCTCGACGAGCGTGACGT 62.738 66.667 31.85 0.00 45.85 4.34
1169 1238 2.730524 GCTCTGCTCACCTCTCCCC 61.731 68.421 0.00 0.00 0.00 4.81
1201 1270 2.098831 GTTAGTCGGCCTGGTTCGC 61.099 63.158 0.00 0.00 0.00 4.70
1202 1271 3.636313 TTAGTCGGCCTGGTTCGCG 62.636 63.158 0.00 0.00 0.00 5.87
1226 1298 3.849951 GAATCTCCGGCGGCTCCA 61.850 66.667 23.83 2.19 34.01 3.86
1227 1299 3.385749 GAATCTCCGGCGGCTCCAA 62.386 63.158 23.83 1.73 34.01 3.53
1241 1333 0.951040 CTCCAACTTGCTCCGGTGAC 60.951 60.000 7.92 0.00 0.00 3.67
1255 1347 2.675423 TGACTCCGTCGTCTGGGG 60.675 66.667 3.48 0.00 34.95 4.96
1259 1351 1.077930 CTCCGTCGTCTGGGGACTA 60.078 63.158 0.00 0.00 40.10 2.59
1264 1356 1.553706 GTCGTCTGGGGACTAGGAAA 58.446 55.000 0.00 0.00 40.10 3.13
1265 1357 1.477295 GTCGTCTGGGGACTAGGAAAG 59.523 57.143 0.00 0.00 40.10 2.62
1267 1359 1.618888 CGTCTGGGGACTAGGAAAGGA 60.619 57.143 0.00 0.00 40.10 3.36
1271 1363 3.181399 TCTGGGGACTAGGAAAGGAAAGA 60.181 47.826 0.00 0.00 0.00 2.52
1352 1445 2.419324 GAGCTTCTTGCAGATGAACTGG 59.581 50.000 0.00 0.00 45.82 4.00
1357 1450 0.895100 TTGCAGATGAACTGGTGGCC 60.895 55.000 0.00 0.00 45.82 5.36
1358 1451 1.001641 GCAGATGAACTGGTGGCCT 60.002 57.895 3.32 0.00 45.82 5.19
1371 1471 3.424105 GGCCTGGCCCCATCTTCT 61.424 66.667 27.77 0.00 44.06 2.85
1372 1472 2.685999 GCCTGGCCCCATCTTCTT 59.314 61.111 7.66 0.00 0.00 2.52
1373 1473 1.454663 GCCTGGCCCCATCTTCTTC 60.455 63.158 7.66 0.00 0.00 2.87
1402 1502 3.836949 TCAATTTTCTTTGCTGGCGATC 58.163 40.909 0.00 0.00 0.00 3.69
1407 1507 0.179111 TCTTTGCTGGCGATCCTACG 60.179 55.000 0.00 0.00 0.00 3.51
1408 1508 0.179111 CTTTGCTGGCGATCCTACGA 60.179 55.000 0.00 0.00 35.09 3.43
1415 1515 1.004595 GGCGATCCTACGAACAAACC 58.995 55.000 0.00 0.00 35.09 3.27
1489 1589 1.209747 GAGGTTGGGGATCAGTGGTAC 59.790 57.143 0.00 0.00 0.00 3.34
1490 1590 0.107848 GGTTGGGGATCAGTGGTACG 60.108 60.000 0.00 0.00 0.00 3.67
1491 1591 0.611714 GTTGGGGATCAGTGGTACGT 59.388 55.000 0.00 0.00 0.00 3.57
1492 1592 1.826720 GTTGGGGATCAGTGGTACGTA 59.173 52.381 0.00 0.00 0.00 3.57
1787 1887 3.000819 CAGGTACGAGCCCACCCA 61.001 66.667 0.00 0.00 35.25 4.51
1809 1909 2.430332 TGCCAATTTTACAGCCATAGCC 59.570 45.455 0.00 0.00 41.25 3.93
1838 1942 1.453197 CCCGCCCTGGTAATTGGAC 60.453 63.158 0.00 0.00 35.15 4.02
1839 1943 1.301623 CCGCCCTGGTAATTGGACA 59.698 57.895 0.00 0.00 0.00 4.02
1840 1944 1.029947 CCGCCCTGGTAATTGGACAC 61.030 60.000 0.00 0.00 0.00 3.67
1841 1945 1.366111 CGCCCTGGTAATTGGACACG 61.366 60.000 0.00 0.00 0.00 4.49
1842 1946 0.322187 GCCCTGGTAATTGGACACGT 60.322 55.000 0.00 0.00 0.00 4.49
1843 1947 1.065998 GCCCTGGTAATTGGACACGTA 60.066 52.381 0.00 0.00 0.00 3.57
1844 1948 2.624636 CCCTGGTAATTGGACACGTAC 58.375 52.381 0.00 0.00 0.00 3.67
1845 1949 2.027929 CCCTGGTAATTGGACACGTACA 60.028 50.000 0.00 0.00 0.00 2.90
1846 1950 3.259064 CCTGGTAATTGGACACGTACAG 58.741 50.000 0.00 0.00 0.00 2.74
1849 1953 4.808558 TGGTAATTGGACACGTACAGTAC 58.191 43.478 0.00 0.00 0.00 2.73
1851 1955 4.622740 GGTAATTGGACACGTACAGTACAC 59.377 45.833 11.37 0.00 27.31 2.90
1852 1956 2.798976 TTGGACACGTACAGTACACC 57.201 50.000 11.37 8.45 27.31 4.16
1853 1957 0.961019 TGGACACGTACAGTACACCC 59.039 55.000 11.37 6.21 0.00 4.61
1855 1959 0.730494 GACACGTACAGTACACCCGC 60.730 60.000 11.37 0.00 0.00 6.13
1858 1962 0.388659 ACGTACAGTACACCCGCAAA 59.611 50.000 11.37 0.00 0.00 3.68
1859 1963 1.065358 CGTACAGTACACCCGCAAAG 58.935 55.000 11.37 0.00 0.00 2.77
1860 1964 1.336148 CGTACAGTACACCCGCAAAGA 60.336 52.381 11.37 0.00 0.00 2.52
1861 1965 2.758009 GTACAGTACACCCGCAAAGAA 58.242 47.619 5.79 0.00 0.00 2.52
1862 1966 2.335316 ACAGTACACCCGCAAAGAAA 57.665 45.000 0.00 0.00 0.00 2.52
1864 1968 2.356695 ACAGTACACCCGCAAAGAAAAC 59.643 45.455 0.00 0.00 0.00 2.43
1865 1969 1.600485 AGTACACCCGCAAAGAAAACG 59.400 47.619 0.00 0.00 0.00 3.60
1866 1970 0.945813 TACACCCGCAAAGAAAACGG 59.054 50.000 0.00 0.00 46.50 4.44
1929 2093 1.511850 TTGATTGCCGTGACAGTGAG 58.488 50.000 0.00 0.00 0.00 3.51
1944 2108 4.810790 ACAGTGAGTCGTTCCTAAATCTG 58.189 43.478 0.00 0.00 0.00 2.90
1949 2113 5.118817 GTGAGTCGTTCCTAAATCTGAACAC 59.881 44.000 0.00 0.00 40.65 3.32
1950 2114 5.209818 AGTCGTTCCTAAATCTGAACACA 57.790 39.130 0.00 0.00 40.65 3.72
1964 2128 5.531634 TCTGAACACATTCTCCAAATTTGC 58.468 37.500 12.92 0.00 35.69 3.68
1981 2145 2.894763 TGCAATTATTGATGCAGGCC 57.105 45.000 9.36 0.00 46.87 5.19
2045 2209 1.993653 CAAGGGCTGGTCATGGAGA 59.006 57.895 0.00 0.00 0.00 3.71
2071 2235 2.545810 CTCACCTTCTCCCTCCTCTTT 58.454 52.381 0.00 0.00 0.00 2.52
2074 2238 1.981495 ACCTTCTCCCTCCTCTTTGTG 59.019 52.381 0.00 0.00 0.00 3.33
2090 2254 1.808390 GTGGTGTACGCGACCATCC 60.808 63.158 19.61 14.66 45.27 3.51
2200 2364 3.140814 GCTTCCATGAACCCCGCC 61.141 66.667 0.00 0.00 0.00 6.13
2201 2365 2.440247 CTTCCATGAACCCCGCCC 60.440 66.667 0.00 0.00 0.00 6.13
2305 2469 1.100510 CCGGGTTCGTCTATGAGACA 58.899 55.000 7.36 0.00 45.30 3.41
2311 2475 4.557205 GGTTCGTCTATGAGACAGTGTTT 58.443 43.478 0.00 0.00 45.30 2.83
2403 2567 8.917415 TTGCATTTACATTTTGCGATGTATAA 57.083 26.923 7.83 6.53 40.94 0.98
2404 2568 9.526713 TTGCATTTACATTTTGCGATGTATAAT 57.473 25.926 7.83 7.92 40.94 1.28
2405 2569 8.966194 TGCATTTACATTTTGCGATGTATAATG 58.034 29.630 20.28 20.28 40.94 1.90
2442 2606 6.258727 ACAATCGATGTCGCTGATAGATTTTT 59.741 34.615 0.00 0.00 37.96 1.94
2448 2612 2.866156 TCGCTGATAGATTTTTCAGGCG 59.134 45.455 5.97 9.00 39.79 5.52
2450 2614 3.309682 CGCTGATAGATTTTTCAGGCGAA 59.690 43.478 11.70 0.00 39.55 4.70
2455 2619 6.115446 TGATAGATTTTTCAGGCGAAGTGAT 58.885 36.000 0.00 0.00 31.28 3.06
2461 2625 3.526931 TTCAGGCGAAGTGATTCTAGG 57.473 47.619 0.00 0.00 0.00 3.02
2466 2630 2.036089 GGCGAAGTGATTCTAGGTAGGG 59.964 54.545 0.00 0.00 0.00 3.53
2467 2631 2.694109 GCGAAGTGATTCTAGGTAGGGT 59.306 50.000 0.00 0.00 0.00 4.34
2468 2632 3.491104 GCGAAGTGATTCTAGGTAGGGTG 60.491 52.174 0.00 0.00 0.00 4.61
2470 2634 4.202030 CGAAGTGATTCTAGGTAGGGTGTC 60.202 50.000 0.00 0.00 0.00 3.67
2471 2635 4.332683 AGTGATTCTAGGTAGGGTGTCA 57.667 45.455 0.00 0.00 0.00 3.58
2485 2649 4.142038 AGGGTGTCAGAAATGGTTTGTAC 58.858 43.478 0.00 0.00 0.00 2.90
2491 2655 3.074412 CAGAAATGGTTTGTACGGAGCT 58.926 45.455 0.00 0.00 0.00 4.09
2492 2656 4.020928 TCAGAAATGGTTTGTACGGAGCTA 60.021 41.667 0.00 0.00 0.00 3.32
2494 2658 3.975168 AATGGTTTGTACGGAGCTACT 57.025 42.857 0.00 0.00 0.00 2.57
2497 2661 3.156293 TGGTTTGTACGGAGCTACTACA 58.844 45.455 0.00 0.00 0.00 2.74
2499 2663 4.221262 TGGTTTGTACGGAGCTACTACAAT 59.779 41.667 16.73 0.00 31.96 2.71
2500 2664 4.565564 GGTTTGTACGGAGCTACTACAATG 59.434 45.833 16.73 0.00 31.96 2.82
2501 2665 3.431922 TGTACGGAGCTACTACAATGC 57.568 47.619 5.96 0.00 0.00 3.56
2555 2771 4.715534 TTCAACCCATTAGAGGTGTGAA 57.284 40.909 0.00 0.00 37.78 3.18
2556 2772 4.715534 TCAACCCATTAGAGGTGTGAAA 57.284 40.909 0.00 0.00 37.78 2.69
2560 2776 6.553100 TCAACCCATTAGAGGTGTGAAATTTT 59.447 34.615 0.00 0.00 37.78 1.82
2608 2824 1.812571 GTGTTGCGAATCAGGGACAAT 59.187 47.619 0.00 0.00 0.00 2.71
2616 2832 3.428045 CGAATCAGGGACAATCCTTTTGC 60.428 47.826 0.00 0.00 36.57 3.68
2617 2833 2.673775 TCAGGGACAATCCTTTTGCA 57.326 45.000 0.00 0.00 36.57 4.08
2622 2838 5.127519 TCAGGGACAATCCTTTTGCAATATG 59.872 40.000 0.00 0.00 36.57 1.78
2649 2865 9.265938 CTTGCATTTACATTGTGCGATATATAC 57.734 33.333 0.00 0.00 41.61 1.47
2650 2866 7.747888 TGCATTTACATTGTGCGATATATACC 58.252 34.615 0.00 0.00 41.61 2.73
2655 2871 8.642908 TTACATTGTGCGATATATACCTATGC 57.357 34.615 0.00 0.00 0.00 3.14
2692 4713 4.693566 TGTTACTGGTAGATTTTTCAGGCG 59.306 41.667 0.00 0.00 0.00 5.52
2709 4730 3.067461 CAGGCGAAGTGATTCTAGCTAGT 59.933 47.826 20.10 1.77 32.92 2.57
2728 4749 4.806342 AGTGTGTCGAAATGGTTTGTAC 57.194 40.909 0.00 0.00 0.00 2.90
2729 4750 3.562557 AGTGTGTCGAAATGGTTTGTACC 59.437 43.478 0.00 0.00 45.26 3.34
2837 4978 3.948473 TGTTTGGAGGACGTGAATTTCAA 59.052 39.130 0.00 0.00 0.00 2.69
2844 4985 4.658063 AGGACGTGAATTTCAACCCATTA 58.342 39.130 0.00 0.00 0.00 1.90
2849 4990 4.700213 CGTGAATTTCAACCCATTAGAGGT 59.300 41.667 0.00 0.00 40.14 3.85
2852 4993 5.476599 TGAATTTCAACCCATTAGAGGTGTG 59.523 40.000 0.00 0.00 37.78 3.82
2855 4996 6.381498 TTTCAACCCATTAGAGGTGTGATA 57.619 37.500 0.00 0.00 37.78 2.15
2887 5028 7.565680 AGTTCTATTAGAGGTGTAATTGGTGG 58.434 38.462 0.00 0.00 0.00 4.61
2891 5032 1.705186 AGAGGTGTAATTGGTGGTGCT 59.295 47.619 0.00 0.00 0.00 4.40
2892 5033 2.084546 GAGGTGTAATTGGTGGTGCTC 58.915 52.381 0.00 0.00 0.00 4.26
2894 5035 1.539827 GGTGTAATTGGTGGTGCTCAC 59.460 52.381 2.79 2.79 45.34 3.51
2916 5057 3.323403 CCAGGGACAAACCTTTTGCAATA 59.677 43.478 0.00 0.00 39.34 1.90
2918 5059 4.931002 CAGGGACAAACCTTTTGCAATATG 59.069 41.667 0.00 0.00 39.34 1.78
2937 5079 4.587211 ATGCTTGCATTTACATTTTGCG 57.413 36.364 1.81 0.00 39.23 4.85
2954 5096 7.977293 ACATTTTGCGATATATACCTATGCGTA 59.023 33.333 0.00 0.00 0.00 4.42
2955 5097 8.813282 CATTTTGCGATATATACCTATGCGTAA 58.187 33.333 0.00 0.00 0.00 3.18
2957 5099 6.068473 TGCGATATATACCTATGCGTAAGG 57.932 41.667 0.00 0.00 40.20 2.69
2969 5111 6.260050 ACCTATGCGTAAGGTAATTGATGTTG 59.740 38.462 2.80 0.00 45.69 3.33
2970 5112 4.349663 TGCGTAAGGTAATTGATGTTGC 57.650 40.909 0.00 0.00 38.28 4.17
2971 5113 3.127895 TGCGTAAGGTAATTGATGTTGCC 59.872 43.478 0.00 0.00 34.47 4.52
2972 5114 3.787476 GCGTAAGGTAATTGATGTTGCCG 60.787 47.826 0.00 0.00 38.68 5.69
2974 5116 4.272504 CGTAAGGTAATTGATGTTGCCGAT 59.727 41.667 0.00 0.00 38.68 4.18
2976 5118 6.346598 CGTAAGGTAATTGATGTTGCCGATAG 60.347 42.308 0.00 0.00 38.68 2.08
2998 5140 1.670791 TTTTTCGGCGGAGTGTTTCT 58.329 45.000 7.21 0.00 0.00 2.52
2999 5141 2.529780 TTTTCGGCGGAGTGTTTCTA 57.470 45.000 7.21 0.00 0.00 2.10
3000 5142 2.074547 TTTCGGCGGAGTGTTTCTAG 57.925 50.000 7.21 0.00 0.00 2.43
3001 5143 0.389426 TTCGGCGGAGTGTTTCTAGC 60.389 55.000 7.21 0.00 0.00 3.42
3002 5144 1.215647 CGGCGGAGTGTTTCTAGCT 59.784 57.895 0.00 0.00 32.65 3.32
3003 5145 0.454600 CGGCGGAGTGTTTCTAGCTA 59.545 55.000 0.00 0.00 32.65 3.32
3004 5146 1.798079 CGGCGGAGTGTTTCTAGCTAC 60.798 57.143 0.00 0.00 32.65 3.58
3005 5147 1.546834 GCGGAGTGTTTCTAGCTACG 58.453 55.000 0.00 0.00 39.38 3.51
3006 5148 1.546834 CGGAGTGTTTCTAGCTACGC 58.453 55.000 0.00 0.00 29.46 4.42
3007 5149 1.132643 CGGAGTGTTTCTAGCTACGCT 59.867 52.381 9.11 9.11 43.41 5.07
3008 5150 2.531206 GGAGTGTTTCTAGCTACGCTG 58.469 52.381 12.85 0.00 40.10 5.18
3009 5151 2.094649 GGAGTGTTTCTAGCTACGCTGT 60.095 50.000 12.85 0.00 40.10 4.40
3010 5152 3.172824 GAGTGTTTCTAGCTACGCTGTC 58.827 50.000 12.85 0.21 40.10 3.51
3011 5153 2.557056 AGTGTTTCTAGCTACGCTGTCA 59.443 45.455 8.69 0.00 40.10 3.58
3012 5154 3.005472 AGTGTTTCTAGCTACGCTGTCAA 59.995 43.478 8.69 0.00 40.10 3.18
3013 5155 3.739300 GTGTTTCTAGCTACGCTGTCAAA 59.261 43.478 0.00 0.00 40.10 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.516460 ATCTCCTCCGTCGGACCG 60.516 66.667 10.71 7.84 0.00 4.79
8 9 1.448922 CTCATCTCCTCCGTCGGACC 61.449 65.000 10.71 0.00 0.00 4.46
9 10 2.026522 CTCATCTCCTCCGTCGGAC 58.973 63.158 10.71 0.00 0.00 4.79
10 11 1.824329 GCTCATCTCCTCCGTCGGA 60.824 63.158 14.54 14.54 0.00 4.55
11 12 1.388065 AAGCTCATCTCCTCCGTCGG 61.388 60.000 4.39 4.39 0.00 4.79
12 13 0.030101 GAAGCTCATCTCCTCCGTCG 59.970 60.000 0.00 0.00 0.00 5.12
13 14 0.030101 CGAAGCTCATCTCCTCCGTC 59.970 60.000 0.00 0.00 0.00 4.79
14 15 1.388065 CCGAAGCTCATCTCCTCCGT 61.388 60.000 0.00 0.00 0.00 4.69
15 16 1.103987 TCCGAAGCTCATCTCCTCCG 61.104 60.000 0.00 0.00 0.00 4.63
16 17 0.387565 GTCCGAAGCTCATCTCCTCC 59.612 60.000 0.00 0.00 0.00 4.30
17 18 0.387565 GGTCCGAAGCTCATCTCCTC 59.612 60.000 0.00 0.00 0.00 3.71
18 19 0.324738 TGGTCCGAAGCTCATCTCCT 60.325 55.000 0.00 0.00 0.00 3.69
19 20 0.755686 ATGGTCCGAAGCTCATCTCC 59.244 55.000 0.00 0.00 0.00 3.71
20 21 1.601663 CGATGGTCCGAAGCTCATCTC 60.602 57.143 8.64 0.00 35.24 2.75
21 22 0.387202 CGATGGTCCGAAGCTCATCT 59.613 55.000 8.64 0.00 35.24 2.90
22 23 0.598680 CCGATGGTCCGAAGCTCATC 60.599 60.000 0.00 0.00 34.37 2.92
23 24 1.043116 TCCGATGGTCCGAAGCTCAT 61.043 55.000 0.00 0.00 0.00 2.90
24 25 1.043116 ATCCGATGGTCCGAAGCTCA 61.043 55.000 0.00 0.00 0.00 4.26
25 26 0.105039 AATCCGATGGTCCGAAGCTC 59.895 55.000 0.00 0.00 0.00 4.09
26 27 0.541863 AAATCCGATGGTCCGAAGCT 59.458 50.000 0.00 0.00 0.00 3.74
27 28 0.657840 CAAATCCGATGGTCCGAAGC 59.342 55.000 0.00 0.00 0.00 3.86
28 29 2.205074 CTCAAATCCGATGGTCCGAAG 58.795 52.381 0.00 0.00 0.00 3.79
29 30 1.134521 CCTCAAATCCGATGGTCCGAA 60.135 52.381 0.00 0.00 0.00 4.30
30 31 0.464036 CCTCAAATCCGATGGTCCGA 59.536 55.000 0.00 0.00 0.00 4.55
31 32 0.532862 CCCTCAAATCCGATGGTCCG 60.533 60.000 0.00 0.00 0.00 4.79
32 33 0.819666 GCCCTCAAATCCGATGGTCC 60.820 60.000 0.00 0.00 0.00 4.46
33 34 1.160329 CGCCCTCAAATCCGATGGTC 61.160 60.000 0.00 0.00 0.00 4.02
34 35 1.153168 CGCCCTCAAATCCGATGGT 60.153 57.895 0.00 0.00 0.00 3.55
35 36 0.748005 AACGCCCTCAAATCCGATGG 60.748 55.000 0.00 0.00 0.00 3.51
36 37 1.094785 AAACGCCCTCAAATCCGATG 58.905 50.000 0.00 0.00 0.00 3.84
37 38 1.743394 GAAAACGCCCTCAAATCCGAT 59.257 47.619 0.00 0.00 0.00 4.18
38 39 1.161843 GAAAACGCCCTCAAATCCGA 58.838 50.000 0.00 0.00 0.00 4.55
39 40 0.179200 CGAAAACGCCCTCAAATCCG 60.179 55.000 0.00 0.00 0.00 4.18
40 41 0.170339 CCGAAAACGCCCTCAAATCC 59.830 55.000 0.00 0.00 0.00 3.01
41 42 0.456142 GCCGAAAACGCCCTCAAATC 60.456 55.000 0.00 0.00 0.00 2.17
42 43 0.893727 AGCCGAAAACGCCCTCAAAT 60.894 50.000 0.00 0.00 0.00 2.32
43 44 1.527380 AGCCGAAAACGCCCTCAAA 60.527 52.632 0.00 0.00 0.00 2.69
44 45 2.112297 AGCCGAAAACGCCCTCAA 59.888 55.556 0.00 0.00 0.00 3.02
45 46 2.668212 CAGCCGAAAACGCCCTCA 60.668 61.111 0.00 0.00 0.00 3.86
46 47 3.431725 CCAGCCGAAAACGCCCTC 61.432 66.667 0.00 0.00 0.00 4.30
47 48 3.901797 CTCCAGCCGAAAACGCCCT 62.902 63.158 0.00 0.00 0.00 5.19
48 49 3.431725 CTCCAGCCGAAAACGCCC 61.432 66.667 0.00 0.00 0.00 6.13
49 50 4.103103 GCTCCAGCCGAAAACGCC 62.103 66.667 0.00 0.00 34.31 5.68
59 60 4.802051 TGGCGAATGGGCTCCAGC 62.802 66.667 0.41 0.00 42.84 4.85
60 61 2.515523 CTGGCGAATGGGCTCCAG 60.516 66.667 0.41 0.00 42.84 3.86
61 62 3.329542 GACTGGCGAATGGGCTCCA 62.330 63.158 0.00 0.00 42.84 3.86
62 63 2.514824 GACTGGCGAATGGGCTCC 60.515 66.667 0.00 0.00 42.84 4.70
63 64 2.514824 GGACTGGCGAATGGGCTC 60.515 66.667 0.00 0.00 42.84 4.70
64 65 2.905996 TTGGACTGGCGAATGGGCT 61.906 57.895 0.00 0.00 42.84 5.19
65 66 2.361104 TTGGACTGGCGAATGGGC 60.361 61.111 0.00 0.00 42.69 5.36
66 67 2.398554 CGTTGGACTGGCGAATGGG 61.399 63.158 0.00 0.00 0.00 4.00
67 68 1.671054 ACGTTGGACTGGCGAATGG 60.671 57.895 2.48 0.00 0.00 3.16
68 69 1.497278 CACGTTGGACTGGCGAATG 59.503 57.895 0.00 0.00 0.00 2.67
69 70 1.671054 CCACGTTGGACTGGCGAAT 60.671 57.895 0.00 0.00 40.96 3.34
70 71 2.280524 CCACGTTGGACTGGCGAA 60.281 61.111 0.00 0.00 40.96 4.70
71 72 4.980805 GCCACGTTGGACTGGCGA 62.981 66.667 8.04 0.00 43.56 5.54
102 103 4.557385 GGGGCGAATACGGGGGTG 62.557 72.222 0.00 0.00 40.15 4.61
103 104 2.968902 TATGGGGCGAATACGGGGGT 62.969 60.000 0.00 0.00 40.15 4.95
104 105 1.559065 ATATGGGGCGAATACGGGGG 61.559 60.000 0.00 0.00 40.15 5.40
105 106 0.326927 AATATGGGGCGAATACGGGG 59.673 55.000 0.00 0.00 40.15 5.73
106 107 1.810151 CAAATATGGGGCGAATACGGG 59.190 52.381 0.00 0.00 40.15 5.28
107 108 1.810151 CCAAATATGGGGCGAATACGG 59.190 52.381 0.00 0.00 43.51 4.02
119 120 6.432162 CACCCCTCATATTCAGTCCAAATATG 59.568 42.308 8.78 8.78 43.64 1.78
120 121 6.546484 CACCCCTCATATTCAGTCCAAATAT 58.454 40.000 0.00 0.00 31.08 1.28
121 122 5.690097 GCACCCCTCATATTCAGTCCAAATA 60.690 44.000 0.00 0.00 0.00 1.40
122 123 4.796606 CACCCCTCATATTCAGTCCAAAT 58.203 43.478 0.00 0.00 0.00 2.32
123 124 3.624707 GCACCCCTCATATTCAGTCCAAA 60.625 47.826 0.00 0.00 0.00 3.28
124 125 2.092429 GCACCCCTCATATTCAGTCCAA 60.092 50.000 0.00 0.00 0.00 3.53
125 126 1.490490 GCACCCCTCATATTCAGTCCA 59.510 52.381 0.00 0.00 0.00 4.02
126 127 1.771255 AGCACCCCTCATATTCAGTCC 59.229 52.381 0.00 0.00 0.00 3.85
127 128 2.486191 CCAGCACCCCTCATATTCAGTC 60.486 54.545 0.00 0.00 0.00 3.51
128 129 1.492176 CCAGCACCCCTCATATTCAGT 59.508 52.381 0.00 0.00 0.00 3.41
129 130 1.492176 ACCAGCACCCCTCATATTCAG 59.508 52.381 0.00 0.00 0.00 3.02
130 131 1.490490 GACCAGCACCCCTCATATTCA 59.510 52.381 0.00 0.00 0.00 2.57
131 132 1.490490 TGACCAGCACCCCTCATATTC 59.510 52.381 0.00 0.00 0.00 1.75
132 133 1.492176 CTGACCAGCACCCCTCATATT 59.508 52.381 0.00 0.00 0.00 1.28
133 134 1.135094 CTGACCAGCACCCCTCATAT 58.865 55.000 0.00 0.00 0.00 1.78
134 135 0.252696 ACTGACCAGCACCCCTCATA 60.253 55.000 0.00 0.00 0.00 2.15
135 136 1.539869 ACTGACCAGCACCCCTCAT 60.540 57.895 0.00 0.00 0.00 2.90
136 137 2.122413 ACTGACCAGCACCCCTCA 60.122 61.111 0.00 0.00 0.00 3.86
137 138 2.665603 GACTGACCAGCACCCCTC 59.334 66.667 0.00 0.00 0.00 4.30
138 139 2.930562 GGACTGACCAGCACCCCT 60.931 66.667 0.00 0.00 38.79 4.79
139 140 4.394712 CGGACTGACCAGCACCCC 62.395 72.222 0.00 0.00 38.90 4.95
140 141 4.394712 CCGGACTGACCAGCACCC 62.395 72.222 0.00 0.00 38.90 4.61
141 142 3.311110 TCCGGACTGACCAGCACC 61.311 66.667 0.00 1.00 38.90 5.01
142 143 2.048127 GTCCGGACTGACCAGCAC 60.048 66.667 27.64 0.00 38.90 4.40
143 144 3.680786 CGTCCGGACTGACCAGCA 61.681 66.667 30.92 0.00 38.90 4.41
144 145 2.710724 AAACGTCCGGACTGACCAGC 62.711 60.000 30.92 3.55 38.90 4.85
145 146 0.944311 CAAACGTCCGGACTGACCAG 60.944 60.000 30.92 17.18 38.90 4.00
146 147 1.068417 CAAACGTCCGGACTGACCA 59.932 57.895 30.92 0.00 38.90 4.02
147 148 0.666577 CTCAAACGTCCGGACTGACC 60.667 60.000 30.92 5.95 31.35 4.02
148 149 0.313043 TCTCAAACGTCCGGACTGAC 59.687 55.000 30.92 7.01 0.00 3.51
149 150 0.596577 CTCTCAAACGTCCGGACTGA 59.403 55.000 30.92 25.06 0.00 3.41
150 151 0.388649 CCTCTCAAACGTCCGGACTG 60.389 60.000 30.92 24.96 0.00 3.51
151 152 1.965219 CCTCTCAAACGTCCGGACT 59.035 57.895 30.92 16.03 0.00 3.85
152 153 1.737008 GCCTCTCAAACGTCCGGAC 60.737 63.158 25.28 25.28 0.00 4.79
153 154 2.654877 GCCTCTCAAACGTCCGGA 59.345 61.111 0.00 0.00 0.00 5.14
154 155 2.434359 GGCCTCTCAAACGTCCGG 60.434 66.667 0.00 0.00 0.00 5.14
155 156 2.434359 GGGCCTCTCAAACGTCCG 60.434 66.667 0.84 0.00 0.00 4.79
156 157 2.434359 CGGGCCTCTCAAACGTCC 60.434 66.667 0.84 0.00 0.00 4.79
157 158 1.737008 GACGGGCCTCTCAAACGTC 60.737 63.158 11.73 11.73 45.42 4.34
158 159 0.896940 TAGACGGGCCTCTCAAACGT 60.897 55.000 0.84 0.56 40.85 3.99
159 160 0.179134 CTAGACGGGCCTCTCAAACG 60.179 60.000 0.84 0.00 0.00 3.60
160 161 0.175989 CCTAGACGGGCCTCTCAAAC 59.824 60.000 0.84 0.00 0.00 2.93
161 162 0.252103 ACCTAGACGGGCCTCTCAAA 60.252 55.000 0.84 0.00 36.97 2.69
162 163 0.683504 GACCTAGACGGGCCTCTCAA 60.684 60.000 0.84 0.00 33.11 3.02
163 164 1.076923 GACCTAGACGGGCCTCTCA 60.077 63.158 0.84 0.00 33.11 3.27
164 165 0.683504 TTGACCTAGACGGGCCTCTC 60.684 60.000 0.84 0.00 41.74 3.20
165 166 0.252103 TTTGACCTAGACGGGCCTCT 60.252 55.000 0.84 6.35 41.74 3.69
166 167 0.611714 TTTTGACCTAGACGGGCCTC 59.388 55.000 0.84 0.00 41.74 4.70
167 168 1.061546 TTTTTGACCTAGACGGGCCT 58.938 50.000 0.84 0.00 41.74 5.19
168 169 3.637184 TTTTTGACCTAGACGGGCC 57.363 52.632 0.00 0.00 41.74 5.80
183 184 4.935808 GGTCACTACTCGGTCATGATTTTT 59.064 41.667 0.00 0.00 0.00 1.94
184 185 4.504858 GGTCACTACTCGGTCATGATTTT 58.495 43.478 0.00 0.00 0.00 1.82
185 186 3.428999 CGGTCACTACTCGGTCATGATTT 60.429 47.826 0.00 0.00 0.00 2.17
186 187 2.099263 CGGTCACTACTCGGTCATGATT 59.901 50.000 0.00 0.00 0.00 2.57
187 188 1.676529 CGGTCACTACTCGGTCATGAT 59.323 52.381 0.00 0.00 0.00 2.45
188 189 1.092348 CGGTCACTACTCGGTCATGA 58.908 55.000 0.00 0.00 0.00 3.07
189 190 0.100682 CCGGTCACTACTCGGTCATG 59.899 60.000 0.00 0.00 35.77 3.07
190 191 1.035932 CCCGGTCACTACTCGGTCAT 61.036 60.000 0.00 0.00 37.59 3.06
191 192 1.676635 CCCGGTCACTACTCGGTCA 60.677 63.158 0.00 0.00 37.59 4.02
192 193 3.061260 GCCCGGTCACTACTCGGTC 62.061 68.421 0.00 0.00 37.59 4.79
193 194 3.066814 GCCCGGTCACTACTCGGT 61.067 66.667 0.00 0.00 37.59 4.69
194 195 4.189188 CGCCCGGTCACTACTCGG 62.189 72.222 0.00 0.00 38.45 4.63
195 196 4.189188 CCGCCCGGTCACTACTCG 62.189 72.222 0.00 0.00 0.00 4.18
196 197 4.509737 GCCGCCCGGTCACTACTC 62.510 72.222 8.66 0.00 37.65 2.59
214 215 4.323477 TCCCAAACGTCCGGCCAG 62.323 66.667 2.24 0.00 0.00 4.85
215 216 4.629523 GTCCCAAACGTCCGGCCA 62.630 66.667 2.24 0.00 0.00 5.36
224 225 5.634020 CGGATCTCTTATATTCGTCCCAAAC 59.366 44.000 0.00 0.00 0.00 2.93
225 226 5.279306 CCGGATCTCTTATATTCGTCCCAAA 60.279 44.000 0.00 0.00 0.00 3.28
226 227 4.219944 CCGGATCTCTTATATTCGTCCCAA 59.780 45.833 0.00 0.00 0.00 4.12
227 228 3.762288 CCGGATCTCTTATATTCGTCCCA 59.238 47.826 0.00 0.00 0.00 4.37
228 229 3.762823 ACCGGATCTCTTATATTCGTCCC 59.237 47.826 9.46 0.00 0.00 4.46
229 230 5.162075 CAACCGGATCTCTTATATTCGTCC 58.838 45.833 9.46 0.00 0.00 4.79
230 231 5.770417 ACAACCGGATCTCTTATATTCGTC 58.230 41.667 9.46 0.00 0.00 4.20
231 232 5.786264 ACAACCGGATCTCTTATATTCGT 57.214 39.130 9.46 0.00 0.00 3.85
232 233 7.142306 TCTACAACCGGATCTCTTATATTCG 57.858 40.000 9.46 0.00 0.00 3.34
233 234 7.489757 GCATCTACAACCGGATCTCTTATATTC 59.510 40.741 9.46 0.00 0.00 1.75
234 235 7.179338 AGCATCTACAACCGGATCTCTTATATT 59.821 37.037 9.46 0.00 0.00 1.28
235 236 6.665680 AGCATCTACAACCGGATCTCTTATAT 59.334 38.462 9.46 0.00 0.00 0.86
236 237 6.010850 AGCATCTACAACCGGATCTCTTATA 58.989 40.000 9.46 0.00 0.00 0.98
237 238 4.835615 AGCATCTACAACCGGATCTCTTAT 59.164 41.667 9.46 0.00 0.00 1.73
238 239 4.215908 AGCATCTACAACCGGATCTCTTA 58.784 43.478 9.46 0.00 0.00 2.10
239 240 3.034635 AGCATCTACAACCGGATCTCTT 58.965 45.455 9.46 0.00 0.00 2.85
240 241 2.625790 GAGCATCTACAACCGGATCTCT 59.374 50.000 9.46 0.00 0.00 3.10
241 242 2.288518 GGAGCATCTACAACCGGATCTC 60.289 54.545 9.46 0.00 33.73 2.75
242 243 1.689273 GGAGCATCTACAACCGGATCT 59.311 52.381 9.46 0.00 33.73 2.75
243 244 1.270358 GGGAGCATCTACAACCGGATC 60.270 57.143 9.46 0.00 33.73 3.36
244 245 0.759346 GGGAGCATCTACAACCGGAT 59.241 55.000 9.46 0.00 33.73 4.18
245 246 0.616395 TGGGAGCATCTACAACCGGA 60.616 55.000 9.46 0.00 33.73 5.14
246 247 0.462047 GTGGGAGCATCTACAACCGG 60.462 60.000 0.00 0.00 33.73 5.28
247 248 0.249120 TGTGGGAGCATCTACAACCG 59.751 55.000 0.00 0.00 31.38 4.44
248 249 1.679032 GGTGTGGGAGCATCTACAACC 60.679 57.143 0.53 0.00 35.08 3.77
249 250 1.279271 AGGTGTGGGAGCATCTACAAC 59.721 52.381 3.32 3.32 39.15 3.32
250 251 1.555075 GAGGTGTGGGAGCATCTACAA 59.445 52.381 0.00 0.00 34.90 2.41
251 252 1.195115 GAGGTGTGGGAGCATCTACA 58.805 55.000 0.00 0.00 33.73 2.74
252 253 1.410882 GAGAGGTGTGGGAGCATCTAC 59.589 57.143 0.00 0.00 33.73 2.59
253 254 1.289231 AGAGAGGTGTGGGAGCATCTA 59.711 52.381 0.00 0.00 33.73 1.98
254 255 0.042431 AGAGAGGTGTGGGAGCATCT 59.958 55.000 0.00 0.00 33.73 2.90
255 256 0.908198 AAGAGAGGTGTGGGAGCATC 59.092 55.000 0.00 0.00 0.00 3.91
256 257 1.366319 AAAGAGAGGTGTGGGAGCAT 58.634 50.000 0.00 0.00 0.00 3.79
257 258 1.140312 AAAAGAGAGGTGTGGGAGCA 58.860 50.000 0.00 0.00 0.00 4.26
258 259 2.278332 AAAAAGAGAGGTGTGGGAGC 57.722 50.000 0.00 0.00 0.00 4.70
282 283 2.650196 GCATGTGCTTTGCGGGAA 59.350 55.556 0.00 0.00 38.21 3.97
284 285 1.386525 ATAGGCATGTGCTTTGCGGG 61.387 55.000 4.84 0.00 41.07 6.13
285 286 1.308047 TATAGGCATGTGCTTTGCGG 58.692 50.000 4.84 0.00 41.07 5.69
308 309 8.632679 CCTGAATGTATGCATACAAAACCTTAT 58.367 33.333 36.12 18.92 45.40 1.73
309 310 7.416213 GCCTGAATGTATGCATACAAAACCTTA 60.416 37.037 36.12 19.68 45.40 2.69
310 311 6.627953 GCCTGAATGTATGCATACAAAACCTT 60.628 38.462 36.12 26.73 45.40 3.50
311 312 5.163519 GCCTGAATGTATGCATACAAAACCT 60.164 40.000 36.12 20.90 45.40 3.50
318 319 5.003160 TGTATGGCCTGAATGTATGCATAC 58.997 41.667 26.72 26.72 34.39 2.39
321 322 3.574354 TGTATGGCCTGAATGTATGCA 57.426 42.857 3.32 0.00 0.00 3.96
397 398 0.108615 ATGGTCGCTTTCGAGTGAGG 60.109 55.000 0.00 0.00 46.46 3.86
451 454 2.125147 TAGCTGATGCCACCGTGC 60.125 61.111 0.00 0.00 40.80 5.34
486 497 3.823873 ACTGCCCACGTATTTCATTTTCA 59.176 39.130 0.00 0.00 0.00 2.69
498 509 1.530323 GTGGATTTTACTGCCCACGT 58.470 50.000 0.00 0.00 39.52 4.49
504 515 1.182667 GGGTGGGTGGATTTTACTGC 58.817 55.000 0.00 0.00 0.00 4.40
563 574 4.142534 ACATCATTTCTGTTTCCAGATGCG 60.143 41.667 0.00 0.00 46.80 4.73
609 627 3.647771 GGTGGGACCCTGGTGACC 61.648 72.222 13.00 6.65 30.04 4.02
642 687 2.545946 GAGCGCACCAAGATATTTCTCC 59.454 50.000 11.47 0.00 0.00 3.71
699 747 2.711185 AAAACGTGCGCCGAGAAAGC 62.711 55.000 22.10 0.00 40.70 3.51
826 875 9.383519 TCGAGAAGATTTTATAGAGCAAAATGT 57.616 29.630 0.00 0.00 36.09 2.71
860 909 9.461312 TGGTGTTTTATAGAGCAACATTTCTAT 57.539 29.630 0.00 0.39 39.36 1.98
861 910 8.856153 TGGTGTTTTATAGAGCAACATTTCTA 57.144 30.769 0.00 0.00 33.15 2.10
862 911 7.665559 TCTGGTGTTTTATAGAGCAACATTTCT 59.334 33.333 0.00 0.00 33.15 2.52
863 912 7.816640 TCTGGTGTTTTATAGAGCAACATTTC 58.183 34.615 0.00 0.00 33.15 2.17
864 913 7.094205 CCTCTGGTGTTTTATAGAGCAACATTT 60.094 37.037 0.00 0.00 36.27 2.32
865 914 6.375455 CCTCTGGTGTTTTATAGAGCAACATT 59.625 38.462 0.00 0.00 36.27 2.71
866 915 5.882557 CCTCTGGTGTTTTATAGAGCAACAT 59.117 40.000 0.00 0.00 36.27 2.71
869 918 4.261801 GCCTCTGGTGTTTTATAGAGCAA 58.738 43.478 0.00 0.00 36.27 3.91
918 971 2.932187 GCGGCTCCGAGGTAAAAAGTAA 60.932 50.000 13.11 0.00 42.83 2.24
919 972 1.404583 GCGGCTCCGAGGTAAAAAGTA 60.405 52.381 13.11 0.00 42.83 2.24
920 973 0.672711 GCGGCTCCGAGGTAAAAAGT 60.673 55.000 13.11 0.00 42.83 2.66
921 974 0.672401 TGCGGCTCCGAGGTAAAAAG 60.672 55.000 13.11 0.00 42.83 2.27
938 1004 1.079543 ATGTGGCGAGAGTCTGTGC 60.080 57.895 0.00 0.71 36.07 4.57
950 1019 0.038166 TCTGGTTCTTGGGATGTGGC 59.962 55.000 0.00 0.00 0.00 5.01
991 1060 1.830587 TTGGTGTCCATGCTCGAGCT 61.831 55.000 35.27 19.64 42.66 4.09
1024 1093 2.571096 GACGTCACGCTCGTCGAG 60.571 66.667 18.08 18.08 45.64 4.04
1144 1213 2.646175 GGTGAGCAGAGCACGGGTA 61.646 63.158 0.00 0.00 37.13 3.69
1150 1219 1.986757 GGGAGAGGTGAGCAGAGCA 60.987 63.158 0.00 0.00 0.00 4.26
1169 1238 4.511826 GCCGACTAACAATTGGAGGATTAG 59.488 45.833 10.83 10.26 0.00 1.73
1226 1298 1.371558 GGAGTCACCGGAGCAAGTT 59.628 57.895 9.46 0.00 0.00 2.66
1227 1299 3.060866 GGAGTCACCGGAGCAAGT 58.939 61.111 9.46 0.00 0.00 3.16
1255 1347 3.672781 CGTCCGTCTTTCCTTTCCTAGTC 60.673 52.174 0.00 0.00 0.00 2.59
1259 1351 1.272769 CTCGTCCGTCTTTCCTTTCCT 59.727 52.381 0.00 0.00 0.00 3.36
1264 1356 1.878656 CTGCCTCGTCCGTCTTTCCT 61.879 60.000 0.00 0.00 0.00 3.36
1265 1357 1.446272 CTGCCTCGTCCGTCTTTCC 60.446 63.158 0.00 0.00 0.00 3.13
1267 1359 1.587054 CTCTGCCTCGTCCGTCTTT 59.413 57.895 0.00 0.00 0.00 2.52
1294 1387 3.499737 CATCCAGCCGACCGTTGC 61.500 66.667 0.00 0.00 0.00 4.17
1295 1388 3.499737 GCATCCAGCCGACCGTTG 61.500 66.667 0.00 0.00 37.23 4.10
1309 1402 3.492353 CCCCGTGGATCCAGGCAT 61.492 66.667 25.91 0.00 0.00 4.40
1327 1420 4.586618 TCTGCAAGAAGCTCGAGC 57.413 55.556 30.01 30.01 42.31 5.03
1357 1450 2.521547 AAAGAAGAAGATGGGGCCAG 57.478 50.000 4.39 0.00 0.00 4.85
1358 1451 2.999185 AAAAGAAGAAGATGGGGCCA 57.001 45.000 4.39 0.00 0.00 5.36
1393 1493 0.459585 TTGTTCGTAGGATCGCCAGC 60.460 55.000 0.00 0.00 36.29 4.85
1395 1495 1.673626 GGTTTGTTCGTAGGATCGCCA 60.674 52.381 0.00 0.00 36.29 5.69
1402 1502 1.259507 CACGTGTGGTTTGTTCGTAGG 59.740 52.381 7.58 0.00 33.49 3.18
1407 1507 2.223180 GGAGAACACGTGTGGTTTGTTC 60.223 50.000 24.16 13.97 46.31 3.18
1408 1508 1.741145 GGAGAACACGTGTGGTTTGTT 59.259 47.619 24.16 3.82 36.16 2.83
1415 1515 0.038159 GGAGGAGGAGAACACGTGTG 60.038 60.000 24.16 0.00 0.00 3.82
1474 1574 1.006281 AGTACGTACCACTGATCCCCA 59.994 52.381 21.80 0.00 0.00 4.96
1475 1575 1.680207 GAGTACGTACCACTGATCCCC 59.320 57.143 21.80 0.00 0.00 4.81
1480 1580 4.703093 TCAATCATGAGTACGTACCACTGA 59.297 41.667 21.80 19.72 0.00 3.41
1489 1589 9.521179 CAAATTAATCGATCAATCATGAGTACG 57.479 33.333 0.00 5.95 39.39 3.67
1490 1590 9.322776 GCAAATTAATCGATCAATCATGAGTAC 57.677 33.333 0.00 0.00 39.39 2.73
1491 1591 9.054922 TGCAAATTAATCGATCAATCATGAGTA 57.945 29.630 0.00 0.00 39.39 2.59
1492 1592 7.933396 TGCAAATTAATCGATCAATCATGAGT 58.067 30.769 0.00 0.00 39.39 3.41
1616 1716 3.124921 CCGCCCGACACATGGAAC 61.125 66.667 0.00 0.00 0.00 3.62
1787 1887 3.070015 GGCTATGGCTGTAAAATTGGCAT 59.930 43.478 0.00 6.92 46.27 4.40
1809 1909 3.443045 GGGCGGGCAGAACACATG 61.443 66.667 3.27 0.00 0.00 3.21
1838 1942 0.318869 TTGCGGGTGTACTGTACGTG 60.319 55.000 12.87 4.29 0.00 4.49
1839 1943 0.388659 TTTGCGGGTGTACTGTACGT 59.611 50.000 12.87 0.00 0.00 3.57
1840 1944 1.065358 CTTTGCGGGTGTACTGTACG 58.935 55.000 12.87 2.69 0.00 3.67
1841 1945 2.443887 TCTTTGCGGGTGTACTGTAC 57.556 50.000 10.98 10.98 0.00 2.90
1842 1946 3.472283 TTTCTTTGCGGGTGTACTGTA 57.528 42.857 0.00 0.00 0.00 2.74
1843 1947 2.335316 TTTCTTTGCGGGTGTACTGT 57.665 45.000 0.00 0.00 0.00 3.55
1844 1948 2.601266 CGTTTTCTTTGCGGGTGTACTG 60.601 50.000 0.00 0.00 0.00 2.74
1845 1949 1.600485 CGTTTTCTTTGCGGGTGTACT 59.400 47.619 0.00 0.00 0.00 2.73
1846 1950 1.334329 CCGTTTTCTTTGCGGGTGTAC 60.334 52.381 0.00 0.00 41.60 2.90
1849 1953 4.626225 CCGTTTTCTTTGCGGGTG 57.374 55.556 0.00 0.00 41.60 4.61
1852 1956 1.284715 GGTCCCGTTTTCTTTGCGG 59.715 57.895 0.00 0.00 44.55 5.69
1853 1957 1.082366 CGGTCCCGTTTTCTTTGCG 60.082 57.895 0.00 0.00 34.35 4.85
1864 1968 1.605710 CCTGTGTACTATACGGTCCCG 59.394 57.143 3.76 3.76 46.03 5.14
1865 1969 2.360165 CACCTGTGTACTATACGGTCCC 59.640 54.545 0.00 0.00 0.00 4.46
1866 1970 3.019564 ACACCTGTGTACTATACGGTCC 58.980 50.000 0.05 0.00 42.90 4.46
1900 2062 6.629128 TGTCACGGCAATCAATTGATAATTT 58.371 32.000 21.00 3.77 40.14 1.82
1929 2093 6.369065 AGAATGTGTTCAGATTTAGGAACGAC 59.631 38.462 0.00 0.00 44.85 4.34
1937 2101 9.695526 CAAATTTGGAGAATGTGTTCAGATTTA 57.304 29.630 10.49 0.00 36.79 1.40
1944 2108 6.790285 ATTGCAAATTTGGAGAATGTGTTC 57.210 33.333 19.47 0.00 34.46 3.18
1949 2113 9.929722 CATCAATAATTGCAAATTTGGAGAATG 57.070 29.630 19.47 11.89 0.00 2.67
1950 2114 8.617809 GCATCAATAATTGCAAATTTGGAGAAT 58.382 29.630 19.47 5.73 38.72 2.40
1964 2128 3.243636 GGAGTGGCCTGCATCAATAATTG 60.244 47.826 3.32 0.00 0.00 2.32
2045 2209 2.688477 GAGGGAGAAGGTGAGGATGAT 58.312 52.381 0.00 0.00 0.00 2.45
2071 2235 1.080366 GATGGTCGCGTACACCACA 60.080 57.895 19.14 0.00 46.90 4.17
2074 2238 1.226888 GAGGATGGTCGCGTACACC 60.227 63.158 5.77 7.35 0.00 4.16
2173 2337 1.745115 CATGGAAGCGCCGGAGAAA 60.745 57.895 10.31 0.00 40.66 2.52
2245 2409 2.288025 GCCGACCCAGTAGACCCAA 61.288 63.158 0.00 0.00 0.00 4.12
2305 2469 3.314553 CGTCTTCGTCACCATAAACACT 58.685 45.455 0.00 0.00 0.00 3.55
2311 2475 1.474879 TCATGCGTCTTCGTCACCATA 59.525 47.619 0.00 0.00 39.49 2.74
2417 2581 3.990318 TCTATCAGCGACATCGATTGT 57.010 42.857 5.26 0.00 43.02 2.71
2428 2592 2.866156 TCGCCTGAAAAATCTATCAGCG 59.134 45.455 10.91 10.91 41.36 5.18
2442 2606 2.457598 ACCTAGAATCACTTCGCCTGA 58.542 47.619 0.00 0.00 36.45 3.86
2448 2612 4.710375 TGACACCCTACCTAGAATCACTTC 59.290 45.833 0.00 0.00 0.00 3.01
2450 2614 4.017407 TCTGACACCCTACCTAGAATCACT 60.017 45.833 0.00 0.00 0.00 3.41
2455 2619 4.469945 CCATTTCTGACACCCTACCTAGAA 59.530 45.833 0.00 0.00 0.00 2.10
2461 2625 4.142038 ACAAACCATTTCTGACACCCTAC 58.858 43.478 0.00 0.00 0.00 3.18
2466 2630 3.810941 TCCGTACAAACCATTTCTGACAC 59.189 43.478 0.00 0.00 0.00 3.67
2467 2631 4.062293 CTCCGTACAAACCATTTCTGACA 58.938 43.478 0.00 0.00 0.00 3.58
2468 2632 3.120304 GCTCCGTACAAACCATTTCTGAC 60.120 47.826 0.00 0.00 0.00 3.51
2470 2634 3.074412 AGCTCCGTACAAACCATTTCTG 58.926 45.455 0.00 0.00 0.00 3.02
2471 2635 3.418684 AGCTCCGTACAAACCATTTCT 57.581 42.857 0.00 0.00 0.00 2.52
2485 2649 2.196749 CACAGCATTGTAGTAGCTCCG 58.803 52.381 0.00 0.00 36.26 4.63
2499 2663 9.853555 CTTCCAAACAAATATATTTACACAGCA 57.146 29.630 10.34 0.00 0.00 4.41
2527 2743 5.476599 CACCTCTAATGGGTTGAAATTCACA 59.523 40.000 0.00 0.00 34.44 3.58
2564 2780 8.258007 CACCAATTACACCTCTAATAGAACTCA 58.742 37.037 0.00 0.00 0.00 3.41
2565 2781 8.258708 ACACCAATTACACCTCTAATAGAACTC 58.741 37.037 0.00 0.00 0.00 3.01
2583 2799 1.545582 CCCTGATTCGCAACACCAATT 59.454 47.619 0.00 0.00 0.00 2.32
2616 2832 6.415702 GCACAATGTAAATGCAAGCATATTG 58.584 36.000 19.17 19.17 39.23 1.90
2617 2833 5.232626 CGCACAATGTAAATGCAAGCATATT 59.767 36.000 8.12 7.62 39.39 1.28
2622 2838 2.594321 TCGCACAATGTAAATGCAAGC 58.406 42.857 0.00 0.00 39.39 4.01
2637 2853 5.913514 CCTTACGCATAGGTATATATCGCAC 59.086 44.000 0.00 0.00 0.00 5.34
2655 2871 3.245284 CCAGTAACATCGATTGCCTTACG 59.755 47.826 0.00 0.00 0.00 3.18
2673 4694 3.695830 TCGCCTGAAAAATCTACCAGT 57.304 42.857 0.00 0.00 0.00 4.00
2692 4713 5.031578 CGACACACTAGCTAGAATCACTTC 58.968 45.833 27.45 11.73 0.00 3.01
2728 4749 1.137086 ACAGCCATTGTAGTAGCTCGG 59.863 52.381 0.00 0.00 38.56 4.63
2729 4750 2.586258 ACAGCCATTGTAGTAGCTCG 57.414 50.000 0.00 0.00 38.56 5.03
2754 4775 1.684450 CTTTTAACCACCACCACCACC 59.316 52.381 0.00 0.00 0.00 4.61
2755 4776 1.067974 GCTTTTAACCACCACCACCAC 59.932 52.381 0.00 0.00 0.00 4.16
2756 4777 1.063567 AGCTTTTAACCACCACCACCA 60.064 47.619 0.00 0.00 0.00 4.17
2757 4778 1.699730 AGCTTTTAACCACCACCACC 58.300 50.000 0.00 0.00 0.00 4.61
2758 4779 3.131400 TCAAAGCTTTTAACCACCACCAC 59.869 43.478 9.53 0.00 0.00 4.16
2759 4780 3.366396 TCAAAGCTTTTAACCACCACCA 58.634 40.909 9.53 0.00 0.00 4.17
2762 4783 7.713073 CCTTTTAATCAAAGCTTTTAACCACCA 59.287 33.333 9.53 0.00 40.75 4.17
2764 4785 7.441157 AGCCTTTTAATCAAAGCTTTTAACCAC 59.559 33.333 9.53 0.00 40.75 4.16
2765 4786 7.505258 AGCCTTTTAATCAAAGCTTTTAACCA 58.495 30.769 9.53 0.00 40.75 3.67
2804 4945 9.104965 TCACGTCCTCCAAACAAATATATTTAG 57.895 33.333 10.34 7.92 0.00 1.85
2823 4964 3.934457 AATGGGTTGAAATTCACGTCC 57.066 42.857 0.00 0.00 0.00 4.79
2887 5028 1.172812 GGTTTGTCCCTGGTGAGCAC 61.173 60.000 0.00 0.00 0.00 4.40
2891 5032 2.383855 CAAAAGGTTTGTCCCTGGTGA 58.616 47.619 0.00 0.00 34.19 4.02
2892 5033 1.202521 GCAAAAGGTTTGTCCCTGGTG 60.203 52.381 2.92 0.00 34.19 4.17
2894 5035 1.118838 TGCAAAAGGTTTGTCCCTGG 58.881 50.000 2.92 0.00 34.19 4.45
2897 5038 3.684305 GCATATTGCAAAAGGTTTGTCCC 59.316 43.478 1.71 0.00 44.26 4.46
2916 5057 4.244066 TCGCAAAATGTAAATGCAAGCAT 58.756 34.783 0.86 0.86 40.04 3.79
2918 5059 4.845621 ATCGCAAAATGTAAATGCAAGC 57.154 36.364 0.00 0.00 40.04 4.01
2951 5093 3.619483 TCGGCAACATCAATTACCTTACG 59.381 43.478 0.00 0.00 0.00 3.18
2954 5096 4.821805 CCTATCGGCAACATCAATTACCTT 59.178 41.667 0.00 0.00 0.00 3.50
2955 5097 4.141482 ACCTATCGGCAACATCAATTACCT 60.141 41.667 0.00 0.00 0.00 3.08
2957 5099 5.751243 AACCTATCGGCAACATCAATTAC 57.249 39.130 0.00 0.00 0.00 1.89
2958 5100 6.767524 AAAACCTATCGGCAACATCAATTA 57.232 33.333 0.00 0.00 0.00 1.40
2959 5101 5.659440 AAAACCTATCGGCAACATCAATT 57.341 34.783 0.00 0.00 0.00 2.32
2979 5121 1.670791 AGAAACACTCCGCCGAAAAA 58.329 45.000 0.00 0.00 0.00 1.94
2980 5122 2.409975 CTAGAAACACTCCGCCGAAAA 58.590 47.619 0.00 0.00 0.00 2.29
2981 5123 1.938016 GCTAGAAACACTCCGCCGAAA 60.938 52.381 0.00 0.00 0.00 3.46
2982 5124 0.389426 GCTAGAAACACTCCGCCGAA 60.389 55.000 0.00 0.00 0.00 4.30
2983 5125 1.214589 GCTAGAAACACTCCGCCGA 59.785 57.895 0.00 0.00 0.00 5.54
2984 5126 0.454600 TAGCTAGAAACACTCCGCCG 59.545 55.000 0.00 0.00 0.00 6.46
2985 5127 1.798079 CGTAGCTAGAAACACTCCGCC 60.798 57.143 0.00 0.00 0.00 6.13
2986 5128 1.546834 CGTAGCTAGAAACACTCCGC 58.453 55.000 0.00 0.00 0.00 5.54
3323 5465 4.260375 GCTTCGCAACATCTATTACACCTG 60.260 45.833 0.00 0.00 0.00 4.00
3325 5467 3.621268 TGCTTCGCAACATCTATTACACC 59.379 43.478 0.00 0.00 34.76 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.