Multiple sequence alignment - TraesCS5A01G516900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G516900 chr5A 100.000 3119 0 0 1 3119 680196124 680199242 0.000000e+00 5760.0
1 TraesCS5A01G516900 chr5A 93.137 204 11 1 2919 3119 137045475 137045678 2.350000e-76 296.0
2 TraesCS5A01G516900 chr4D 90.482 1681 74 48 1 1634 499402398 499404039 0.000000e+00 2139.0
3 TraesCS5A01G516900 chr4D 98.529 408 6 0 1714 2121 499404161 499404568 0.000000e+00 721.0
4 TraesCS5A01G516900 chr4D 88.969 553 35 10 2176 2710 499404680 499405224 0.000000e+00 660.0
5 TraesCS5A01G516900 chr4B 88.507 1105 45 35 1717 2760 642331546 642332629 0.000000e+00 1262.0
6 TraesCS5A01G516900 chr4B 84.283 1387 97 65 120 1443 642329754 642331082 0.000000e+00 1242.0
7 TraesCS5A01G516900 chr4B 98.684 76 1 0 61 136 642329663 642329738 5.430000e-28 135.0
8 TraesCS5A01G516900 chr4B 94.366 71 4 0 2834 2904 642338277 642338347 3.290000e-20 110.0
9 TraesCS5A01G516900 chr4B 96.875 32 1 0 2834 2865 609310984 609310953 2.000000e-03 54.7
10 TraesCS5A01G516900 chr3A 94.118 204 9 1 2919 3119 749613371 749613574 1.090000e-79 307.0
11 TraesCS5A01G516900 chr3A 92.788 208 11 2 2916 3119 658634528 658634735 6.540000e-77 298.0
12 TraesCS5A01G516900 chr7A 92.344 209 12 2 2915 3119 22949878 22949670 8.460000e-76 294.0
13 TraesCS5A01G516900 chr4A 92.718 206 12 3 2917 3119 38289483 38289688 8.460000e-76 294.0
14 TraesCS5A01G516900 chr4A 92.574 202 12 1 2919 3117 171633598 171633799 1.420000e-73 287.0
15 TraesCS5A01G516900 chr4A 100.000 29 0 0 2834 2862 65350826 65350854 2.000000e-03 54.7
16 TraesCS5A01G516900 chr3B 92.718 206 12 1 2917 3119 659150081 659149876 8.460000e-76 294.0
17 TraesCS5A01G516900 chr3B 91.827 208 12 3 2916 3119 741356349 741356555 5.090000e-73 285.0
18 TraesCS5A01G516900 chr5B 92.574 202 12 1 2919 3117 666314855 666315056 1.420000e-73 287.0
19 TraesCS5A01G516900 chr3D 96.000 50 2 0 2834 2883 539239840 539239791 7.170000e-12 82.4
20 TraesCS5A01G516900 chr3D 91.228 57 5 0 2834 2890 495809207 495809263 9.270000e-11 78.7
21 TraesCS5A01G516900 chr6D 91.304 46 3 1 2834 2879 80528302 80528258 9.340000e-06 62.1
22 TraesCS5A01G516900 chr6D 100.000 29 0 0 2837 2865 419449005 419449033 2.000000e-03 54.7
23 TraesCS5A01G516900 chr2B 85.455 55 6 2 2833 2886 236992166 236992113 4.350000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G516900 chr5A 680196124 680199242 3118 False 5760.000000 5760 100.000000 1 3119 1 chr5A.!!$F2 3118
1 TraesCS5A01G516900 chr4D 499402398 499405224 2826 False 1173.333333 2139 92.660000 1 2710 3 chr4D.!!$F1 2709
2 TraesCS5A01G516900 chr4B 642329663 642332629 2966 False 879.666667 1262 90.491333 61 2760 3 chr4B.!!$F2 2699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 967 0.034476 CACAGAGAGAGGCAACAGCA 59.966 55.0 0.0 0.0 41.41 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2766 3196 0.03582 CCACTAGCAACCCGGCTAAA 60.036 55.0 0.0 0.0 45.13 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 58 6.433766 GCGAAGATTTTTGGGAATATCTCAG 58.566 40.000 0.00 0.00 33.98 3.35
59 61 7.283127 CGAAGATTTTTGGGAATATCTCAGGAA 59.717 37.037 0.00 0.00 33.98 3.36
213 247 7.944729 ACATAGGAAAAGAACATGCACTAAT 57.055 32.000 0.00 0.00 0.00 1.73
251 288 6.701145 TCTCTTAATCTCTTGTCGCATACT 57.299 37.500 0.00 0.00 0.00 2.12
252 289 7.803279 TCTCTTAATCTCTTGTCGCATACTA 57.197 36.000 0.00 0.00 0.00 1.82
253 290 8.397575 TCTCTTAATCTCTTGTCGCATACTAT 57.602 34.615 0.00 0.00 0.00 2.12
259 296 6.418585 TCTCTTGTCGCATACTATATACGG 57.581 41.667 0.00 0.00 0.00 4.02
264 301 8.017373 TCTTGTCGCATACTATATACGGTTTAC 58.983 37.037 0.00 0.00 0.00 2.01
287 329 2.734606 CAGGCATTGTCAGTGCAAATTG 59.265 45.455 20.44 9.87 44.25 2.32
375 426 6.368516 CACTGTTTTGTTGTCCAAGAATTTGT 59.631 34.615 0.00 0.00 33.75 2.83
514 584 2.203195 AGCCTCTGTTGCAACGCA 60.203 55.556 23.79 12.08 36.47 5.24
553 623 0.873054 CATCATTCGCCAGCTCATCC 59.127 55.000 0.00 0.00 0.00 3.51
554 624 0.763652 ATCATTCGCCAGCTCATCCT 59.236 50.000 0.00 0.00 0.00 3.24
557 627 1.053264 ATTCGCCAGCTCATCCTCCT 61.053 55.000 0.00 0.00 0.00 3.69
560 630 1.684386 CGCCAGCTCATCCTCCTCTT 61.684 60.000 0.00 0.00 0.00 2.85
561 631 1.418334 GCCAGCTCATCCTCCTCTTA 58.582 55.000 0.00 0.00 0.00 2.10
562 632 1.977129 GCCAGCTCATCCTCCTCTTAT 59.023 52.381 0.00 0.00 0.00 1.73
563 633 2.289569 GCCAGCTCATCCTCCTCTTATG 60.290 54.545 0.00 0.00 0.00 1.90
564 634 2.289569 CCAGCTCATCCTCCTCTTATGC 60.290 54.545 0.00 0.00 0.00 3.14
586 658 4.630111 CCTCTGCATCTTGAGATTACTCC 58.370 47.826 2.40 0.00 41.99 3.85
649 721 3.578716 TCTCCAAGAAGTGAAGTGGTAGG 59.421 47.826 0.00 0.00 32.68 3.18
658 730 4.337145 AGTGAAGTGGTAGGAGACTAGTG 58.663 47.826 0.00 0.00 45.49 2.74
694 766 1.002868 CTCAGGTGGCAGAACAGGG 60.003 63.158 0.00 0.00 0.00 4.45
760 834 3.956848 AGCAATAAAATGAGGAGGAAGGC 59.043 43.478 0.00 0.00 0.00 4.35
761 835 3.701040 GCAATAAAATGAGGAGGAAGGCA 59.299 43.478 0.00 0.00 0.00 4.75
765 839 1.376649 AATGAGGAGGAAGGCAAGGT 58.623 50.000 0.00 0.00 0.00 3.50
766 840 1.376649 ATGAGGAGGAAGGCAAGGTT 58.623 50.000 0.00 0.00 0.00 3.50
768 842 1.628846 TGAGGAGGAAGGCAAGGTTAC 59.371 52.381 0.00 0.00 0.00 2.50
792 870 2.373707 GCAGCCCACCATCTCCTCT 61.374 63.158 0.00 0.00 0.00 3.69
793 871 1.828768 CAGCCCACCATCTCCTCTC 59.171 63.158 0.00 0.00 0.00 3.20
795 873 1.383803 GCCCACCATCTCCTCTCCT 60.384 63.158 0.00 0.00 0.00 3.69
796 874 1.406860 GCCCACCATCTCCTCTCCTC 61.407 65.000 0.00 0.00 0.00 3.71
798 876 0.264359 CCACCATCTCCTCTCCTCCT 59.736 60.000 0.00 0.00 0.00 3.69
799 877 1.343884 CCACCATCTCCTCTCCTCCTT 60.344 57.143 0.00 0.00 0.00 3.36
825 912 0.327191 TACCATTCCCTCCACCTCCC 60.327 60.000 0.00 0.00 0.00 4.30
826 913 2.386935 CCATTCCCTCCACCTCCCC 61.387 68.421 0.00 0.00 0.00 4.81
837 924 1.493446 CCACCTCCCCCTATAAACCAC 59.507 57.143 0.00 0.00 0.00 4.16
857 955 0.315251 CGCAAGGACACTCACAGAGA 59.685 55.000 0.31 0.00 33.32 3.10
868 966 0.319728 TCACAGAGAGAGGCAACAGC 59.680 55.000 0.00 0.00 41.41 4.40
869 967 0.034476 CACAGAGAGAGGCAACAGCA 59.966 55.000 0.00 0.00 41.41 4.41
870 968 0.034616 ACAGAGAGAGGCAACAGCAC 59.965 55.000 0.00 0.00 41.41 4.40
871 969 0.321021 CAGAGAGAGGCAACAGCACT 59.679 55.000 0.00 0.00 41.41 4.40
872 970 0.607620 AGAGAGAGGCAACAGCACTC 59.392 55.000 0.00 0.00 41.41 3.51
873 971 0.319728 GAGAGAGGCAACAGCACTCA 59.680 55.000 13.22 0.00 36.45 3.41
874 972 0.321021 AGAGAGGCAACAGCACTCAG 59.679 55.000 13.22 0.00 36.45 3.35
875 973 1.297456 GAGAGGCAACAGCACTCAGC 61.297 60.000 0.00 0.00 46.19 4.26
1050 1148 1.003718 GTACGGCTGCTTCAACCCT 60.004 57.895 0.00 0.00 0.00 4.34
1287 1387 1.976132 GCCTGCCCAGCTCTGTGATA 61.976 60.000 0.00 0.00 0.00 2.15
1306 1406 5.936372 GTGATAGATAGGCATTGCATCAAGA 59.064 40.000 11.39 0.00 0.00 3.02
1443 1574 0.536460 CCACTAACCACACCACCACC 60.536 60.000 0.00 0.00 0.00 4.61
1458 1589 5.528690 CACCACCACCACTATTATCATCTTG 59.471 44.000 0.00 0.00 0.00 3.02
1465 1596 5.307976 ACCACTATTATCATCTTGGCAGCTA 59.692 40.000 0.00 0.00 0.00 3.32
1466 1597 6.013032 ACCACTATTATCATCTTGGCAGCTAT 60.013 38.462 0.00 0.00 0.00 2.97
1467 1598 6.883217 CCACTATTATCATCTTGGCAGCTATT 59.117 38.462 0.00 0.00 0.00 1.73
1468 1599 7.148289 CCACTATTATCATCTTGGCAGCTATTG 60.148 40.741 0.00 0.00 0.00 1.90
1498 1745 7.416022 CCTGTAGTAGACGTTAATCCACTTAG 58.584 42.308 0.00 0.00 0.00 2.18
1540 1787 7.141100 TCTTAACCAAAGAATTCATTCGGAC 57.859 36.000 8.44 0.00 41.35 4.79
1579 1829 5.848036 GTCACAATCGCATATGTAATCAAGC 59.152 40.000 4.29 0.00 0.00 4.01
1605 1855 0.039165 CGCCCTCAAAAGCAAGGAAC 60.039 55.000 0.00 0.00 34.35 3.62
1612 1862 3.765026 TCAAAAGCAAGGAACAAACGAC 58.235 40.909 0.00 0.00 0.00 4.34
1623 1873 4.760204 AGGAACAAACGACCCATAAAGAAG 59.240 41.667 0.00 0.00 0.00 2.85
1634 1884 4.021981 ACCCATAAAGAAGCTTTTCACTGC 60.022 41.667 0.00 0.00 0.00 4.40
1635 1885 4.488879 CCATAAAGAAGCTTTTCACTGCC 58.511 43.478 0.00 0.00 0.00 4.85
1636 1886 4.219288 CCATAAAGAAGCTTTTCACTGCCT 59.781 41.667 0.00 0.00 0.00 4.75
1637 1887 3.722728 AAAGAAGCTTTTCACTGCCTG 57.277 42.857 0.00 0.00 0.00 4.85
1638 1888 2.355010 AGAAGCTTTTCACTGCCTGT 57.645 45.000 0.00 0.00 0.00 4.00
1640 1890 0.386838 AAGCTTTTCACTGCCTGTGC 59.613 50.000 0.00 0.00 45.81 4.57
1641 1891 0.466922 AGCTTTTCACTGCCTGTGCT 60.467 50.000 0.00 0.00 45.81 4.40
1642 1892 0.039708 GCTTTTCACTGCCTGTGCTC 60.040 55.000 0.00 0.00 45.81 4.26
1643 1893 1.602311 CTTTTCACTGCCTGTGCTCT 58.398 50.000 0.00 0.00 45.81 4.09
1644 1894 1.266175 CTTTTCACTGCCTGTGCTCTG 59.734 52.381 0.00 0.00 45.81 3.35
1645 1895 0.181114 TTTCACTGCCTGTGCTCTGT 59.819 50.000 0.00 0.00 45.81 3.41
1646 1896 0.533531 TTCACTGCCTGTGCTCTGTG 60.534 55.000 0.00 0.00 45.81 3.66
1654 1904 0.585357 CTGTGCTCTGTGCTGTGTTC 59.415 55.000 3.20 0.00 43.37 3.18
1659 1909 1.002033 GCTCTGTGCTGTGTTCCAAAG 60.002 52.381 0.00 0.00 38.95 2.77
1661 1911 2.288666 TCTGTGCTGTGTTCCAAAGTC 58.711 47.619 0.00 0.00 0.00 3.01
1676 1926 3.824443 CCAAAGTCGGGACCAGTAAAAAT 59.176 43.478 0.00 0.00 0.00 1.82
1682 1932 7.369551 AGTCGGGACCAGTAAAAATATATGA 57.630 36.000 0.00 0.00 0.00 2.15
1688 2005 7.121315 GGGACCAGTAAAAATATATGATGGAGC 59.879 40.741 0.00 0.00 0.00 4.70
1694 2011 8.737175 AGTAAAAATATATGATGGAGCATGCTG 58.263 33.333 28.27 0.00 0.00 4.41
1695 2012 5.578005 AAATATATGATGGAGCATGCTGC 57.422 39.130 30.22 30.22 45.46 5.25
1707 2024 1.227089 ATGCTGCTAACCGCTCGAG 60.227 57.895 8.45 8.45 40.11 4.04
1708 2025 1.949847 ATGCTGCTAACCGCTCGAGT 61.950 55.000 15.13 0.00 40.11 4.18
1710 2027 0.030908 GCTGCTAACCGCTCGAGTAT 59.969 55.000 15.13 0.56 40.11 2.12
1711 2028 1.759994 CTGCTAACCGCTCGAGTATG 58.240 55.000 15.13 5.39 40.11 2.39
1712 2029 0.384309 TGCTAACCGCTCGAGTATGG 59.616 55.000 15.13 15.60 40.11 2.74
1737 2065 3.023949 ATGGCAGACGGTGGAGCTC 62.024 63.158 4.71 4.71 0.00 4.09
2121 2449 2.398498 GCGTGCTCCATCATGTAGTAG 58.602 52.381 0.00 0.00 0.00 2.57
2122 2450 2.398498 CGTGCTCCATCATGTAGTAGC 58.602 52.381 0.00 0.00 0.00 3.58
2124 2452 3.737972 CGTGCTCCATCATGTAGTAGCAA 60.738 47.826 14.09 1.35 41.24 3.91
2128 2482 5.059161 GCTCCATCATGTAGTAGCAAATCA 58.941 41.667 0.00 0.00 0.00 2.57
2135 2495 6.519382 TCATGTAGTAGCAAATCATCCTCTG 58.481 40.000 0.00 0.00 0.00 3.35
2153 2513 0.328592 TGGAGGTCGTCTAGTGCTCT 59.671 55.000 0.00 0.00 0.00 4.09
2154 2514 1.018910 GGAGGTCGTCTAGTGCTCTC 58.981 60.000 0.00 0.00 0.00 3.20
2192 2586 1.134068 GGGAAGATAGACAAGTGGGCC 60.134 57.143 0.00 0.00 0.00 5.80
2195 2589 1.883084 GATAGACAAGTGGGCCGCG 60.883 63.158 12.16 0.00 0.00 6.46
2329 2729 0.725686 CTGCATGTTCTTCTCTGCCG 59.274 55.000 0.00 0.00 33.70 5.69
2347 2747 1.867233 CCGCGATCGAGATTCCAAAAT 59.133 47.619 21.57 0.00 38.10 1.82
2348 2748 2.287915 CCGCGATCGAGATTCCAAAATT 59.712 45.455 21.57 0.00 38.10 1.82
2563 2990 1.349234 GCGCGCTTGATTGGAAATTT 58.651 45.000 26.67 0.00 0.00 1.82
2577 3004 1.065401 GAAATTTGGATGATGGCGCGA 59.935 47.619 12.10 0.00 0.00 5.87
2579 3006 0.877071 ATTTGGATGATGGCGCGATC 59.123 50.000 23.71 23.71 0.00 3.69
2594 3021 2.030457 CGCGATCGATTGTAAAAGCCTT 59.970 45.455 21.57 0.00 38.10 4.35
2613 3040 0.722676 TGGAAGTGGGGAGGATAGGT 59.277 55.000 0.00 0.00 0.00 3.08
2627 3054 5.452636 GGAGGATAGGTGTTCTTGATGTCTC 60.453 48.000 0.00 0.00 0.00 3.36
2696 3126 3.678548 CGGCTAAAAGTGTAGACTTGTCC 59.321 47.826 5.96 4.75 41.87 4.02
2704 3134 5.216614 AGTGTAGACTTGTCCTTCTTTCC 57.783 43.478 0.00 0.00 0.00 3.13
2712 3142 6.544197 AGACTTGTCCTTCTTTCCTTTTCTTC 59.456 38.462 0.00 0.00 0.00 2.87
2714 3144 6.892456 ACTTGTCCTTCTTTCCTTTTCTTCTT 59.108 34.615 0.00 0.00 0.00 2.52
2730 3160 0.898320 TCTTCGAGGGAAAGAGCAGG 59.102 55.000 0.00 0.00 0.00 4.85
2747 3177 1.529713 GGGTTGTCTTTGCGGGGAA 60.530 57.895 0.00 0.00 0.00 3.97
2756 3186 0.887933 TTTGCGGGGAAAGATTCTGC 59.112 50.000 0.00 0.00 0.00 4.26
2760 3190 1.826385 CGGGGAAAGATTCTGCAAGT 58.174 50.000 0.00 0.00 33.76 3.16
2761 3191 1.470098 CGGGGAAAGATTCTGCAAGTG 59.530 52.381 0.00 0.00 33.76 3.16
2762 3192 1.821136 GGGGAAAGATTCTGCAAGTGG 59.179 52.381 0.00 0.00 33.76 4.00
2763 3193 2.519013 GGGAAAGATTCTGCAAGTGGT 58.481 47.619 0.00 0.00 33.76 4.16
2764 3194 2.893489 GGGAAAGATTCTGCAAGTGGTT 59.107 45.455 0.00 0.00 33.76 3.67
2765 3195 3.321968 GGGAAAGATTCTGCAAGTGGTTT 59.678 43.478 0.00 0.00 33.76 3.27
2766 3196 4.202253 GGGAAAGATTCTGCAAGTGGTTTT 60.202 41.667 0.00 0.00 33.76 2.43
2767 3197 5.359756 GGAAAGATTCTGCAAGTGGTTTTT 58.640 37.500 0.00 0.00 33.76 1.94
2783 3213 2.572209 TTTTTAGCCGGGTTGCTAGT 57.428 45.000 13.43 0.00 44.18 2.57
2784 3214 1.816074 TTTTAGCCGGGTTGCTAGTG 58.184 50.000 13.43 0.00 44.18 2.74
2785 3215 0.035820 TTTAGCCGGGTTGCTAGTGG 60.036 55.000 13.43 0.00 44.18 4.00
2786 3216 1.196104 TTAGCCGGGTTGCTAGTGGT 61.196 55.000 13.43 0.00 44.18 4.16
2787 3217 0.324552 TAGCCGGGTTGCTAGTGGTA 60.325 55.000 13.43 0.00 42.75 3.25
2788 3218 1.196104 AGCCGGGTTGCTAGTGGTAA 61.196 55.000 0.00 0.00 40.56 2.85
2789 3219 0.743345 GCCGGGTTGCTAGTGGTAAG 60.743 60.000 2.18 0.00 0.00 2.34
2790 3220 0.611714 CCGGGTTGCTAGTGGTAAGT 59.388 55.000 0.00 0.00 0.00 2.24
2791 3221 1.674817 CCGGGTTGCTAGTGGTAAGTG 60.675 57.143 0.00 0.00 0.00 3.16
2792 3222 1.450025 GGGTTGCTAGTGGTAAGTGC 58.550 55.000 0.00 0.00 0.00 4.40
2793 3223 1.271163 GGGTTGCTAGTGGTAAGTGCA 60.271 52.381 0.00 0.00 0.00 4.57
2794 3224 2.500229 GGTTGCTAGTGGTAAGTGCAA 58.500 47.619 0.00 0.00 40.65 4.08
2795 3225 2.882137 GGTTGCTAGTGGTAAGTGCAAA 59.118 45.455 0.00 0.00 43.72 3.68
2796 3226 3.304458 GGTTGCTAGTGGTAAGTGCAAAC 60.304 47.826 0.00 0.00 43.72 2.93
2797 3227 3.201353 TGCTAGTGGTAAGTGCAAACA 57.799 42.857 0.00 0.00 0.00 2.83
2798 3228 3.546724 TGCTAGTGGTAAGTGCAAACAA 58.453 40.909 0.00 0.00 0.00 2.83
2799 3229 3.563808 TGCTAGTGGTAAGTGCAAACAAG 59.436 43.478 0.00 0.00 0.00 3.16
2800 3230 3.564225 GCTAGTGGTAAGTGCAAACAAGT 59.436 43.478 0.00 0.00 0.00 3.16
2801 3231 4.554723 GCTAGTGGTAAGTGCAAACAAGTG 60.555 45.833 0.00 0.00 0.00 3.16
2802 3232 2.099098 AGTGGTAAGTGCAAACAAGTGC 59.901 45.455 0.00 0.00 45.15 4.40
2813 3243 5.129901 GCAAACAAGTGCAAAGTTGTAAG 57.870 39.130 9.97 7.54 44.29 2.34
2814 3244 4.492409 GCAAACAAGTGCAAAGTTGTAAGC 60.492 41.667 9.97 12.12 44.29 3.09
2815 3245 4.448537 AACAAGTGCAAAGTTGTAAGCA 57.551 36.364 9.97 0.00 35.83 3.91
2816 3246 4.654091 ACAAGTGCAAAGTTGTAAGCAT 57.346 36.364 8.25 0.00 39.43 3.79
2817 3247 4.610945 ACAAGTGCAAAGTTGTAAGCATC 58.389 39.130 8.25 0.00 39.43 3.91
2818 3248 3.923017 AGTGCAAAGTTGTAAGCATCC 57.077 42.857 0.00 0.00 39.43 3.51
2819 3249 3.221771 AGTGCAAAGTTGTAAGCATCCA 58.778 40.909 0.00 0.00 39.43 3.41
2820 3250 3.828451 AGTGCAAAGTTGTAAGCATCCAT 59.172 39.130 0.00 0.00 39.43 3.41
2821 3251 3.922240 GTGCAAAGTTGTAAGCATCCATG 59.078 43.478 0.00 0.00 39.43 3.66
2822 3252 3.056678 TGCAAAGTTGTAAGCATCCATGG 60.057 43.478 4.97 4.97 31.05 3.66
2823 3253 3.514645 CAAAGTTGTAAGCATCCATGGC 58.485 45.455 6.96 0.00 0.00 4.40
2824 3254 2.512692 AGTTGTAAGCATCCATGGCA 57.487 45.000 6.96 0.00 0.00 4.92
2825 3255 2.372264 AGTTGTAAGCATCCATGGCAG 58.628 47.619 6.96 2.51 0.00 4.85
2826 3256 1.406539 GTTGTAAGCATCCATGGCAGG 59.593 52.381 6.96 0.00 0.00 4.85
2827 3257 0.918258 TGTAAGCATCCATGGCAGGA 59.082 50.000 6.96 4.29 43.01 3.86
2828 3258 1.134007 TGTAAGCATCCATGGCAGGAG 60.134 52.381 6.96 0.00 41.90 3.69
2829 3259 0.475475 TAAGCATCCATGGCAGGAGG 59.525 55.000 6.96 6.99 41.90 4.30
2830 3260 1.578215 AAGCATCCATGGCAGGAGGT 61.578 55.000 6.96 0.00 41.38 3.85
2831 3261 1.826921 GCATCCATGGCAGGAGGTG 60.827 63.158 6.96 7.69 41.38 4.00
2832 3262 1.152819 CATCCATGGCAGGAGGTGG 60.153 63.158 6.96 0.00 41.90 4.61
2833 3263 1.620589 ATCCATGGCAGGAGGTGGT 60.621 57.895 6.96 0.00 41.90 4.16
2834 3264 0.327480 ATCCATGGCAGGAGGTGGTA 60.327 55.000 6.96 0.00 41.90 3.25
2835 3265 0.548926 TCCATGGCAGGAGGTGGTAA 60.549 55.000 6.96 0.00 32.77 2.85
2836 3266 0.107017 CCATGGCAGGAGGTGGTAAG 60.107 60.000 0.00 0.00 0.00 2.34
2837 3267 0.107017 CATGGCAGGAGGTGGTAAGG 60.107 60.000 0.00 0.00 0.00 2.69
2838 3268 1.281925 ATGGCAGGAGGTGGTAAGGG 61.282 60.000 0.00 0.00 0.00 3.95
2839 3269 2.272471 GCAGGAGGTGGTAAGGGC 59.728 66.667 0.00 0.00 0.00 5.19
2840 3270 2.602676 GCAGGAGGTGGTAAGGGCA 61.603 63.158 0.00 0.00 0.00 5.36
2841 3271 1.926426 GCAGGAGGTGGTAAGGGCAT 61.926 60.000 0.00 0.00 0.00 4.40
2842 3272 0.181350 CAGGAGGTGGTAAGGGCATC 59.819 60.000 0.00 0.00 0.00 3.91
2843 3273 0.044855 AGGAGGTGGTAAGGGCATCT 59.955 55.000 0.00 0.00 0.00 2.90
2844 3274 0.470341 GGAGGTGGTAAGGGCATCTC 59.530 60.000 0.00 0.00 0.00 2.75
2845 3275 0.470341 GAGGTGGTAAGGGCATCTCC 59.530 60.000 0.00 0.00 0.00 3.71
2846 3276 0.253160 AGGTGGTAAGGGCATCTCCA 60.253 55.000 0.00 0.00 36.21 3.86
2847 3277 0.623723 GGTGGTAAGGGCATCTCCAA 59.376 55.000 0.00 0.00 36.21 3.53
2848 3278 1.682087 GGTGGTAAGGGCATCTCCAAC 60.682 57.143 0.00 0.00 36.21 3.77
2849 3279 0.251916 TGGTAAGGGCATCTCCAACG 59.748 55.000 0.00 0.00 36.21 4.10
2850 3280 1.095807 GGTAAGGGCATCTCCAACGC 61.096 60.000 0.00 0.00 36.21 4.84
2851 3281 1.095807 GTAAGGGCATCTCCAACGCC 61.096 60.000 0.00 0.00 45.47 5.68
2854 3284 3.195698 GGCATCTCCAACGCCGAC 61.196 66.667 0.00 0.00 35.79 4.79
2855 3285 3.195698 GCATCTCCAACGCCGACC 61.196 66.667 0.00 0.00 0.00 4.79
2856 3286 2.511600 CATCTCCAACGCCGACCC 60.512 66.667 0.00 0.00 0.00 4.46
2857 3287 2.683933 ATCTCCAACGCCGACCCT 60.684 61.111 0.00 0.00 0.00 4.34
2858 3288 2.291043 ATCTCCAACGCCGACCCTT 61.291 57.895 0.00 0.00 0.00 3.95
2859 3289 0.974010 ATCTCCAACGCCGACCCTTA 60.974 55.000 0.00 0.00 0.00 2.69
2860 3290 1.186917 TCTCCAACGCCGACCCTTAA 61.187 55.000 0.00 0.00 0.00 1.85
2861 3291 0.320946 CTCCAACGCCGACCCTTAAA 60.321 55.000 0.00 0.00 0.00 1.52
2862 3292 0.108207 TCCAACGCCGACCCTTAAAA 59.892 50.000 0.00 0.00 0.00 1.52
2863 3293 0.239082 CCAACGCCGACCCTTAAAAC 59.761 55.000 0.00 0.00 0.00 2.43
2864 3294 0.110554 CAACGCCGACCCTTAAAACG 60.111 55.000 0.00 0.00 0.00 3.60
2865 3295 1.844771 AACGCCGACCCTTAAAACGC 61.845 55.000 0.00 0.00 0.00 4.84
2866 3296 2.872557 GCCGACCCTTAAAACGCC 59.127 61.111 0.00 0.00 0.00 5.68
2867 3297 1.673337 GCCGACCCTTAAAACGCCT 60.673 57.895 0.00 0.00 0.00 5.52
2868 3298 0.391528 GCCGACCCTTAAAACGCCTA 60.392 55.000 0.00 0.00 0.00 3.93
2869 3299 1.362768 CCGACCCTTAAAACGCCTAC 58.637 55.000 0.00 0.00 0.00 3.18
2870 3300 1.338011 CCGACCCTTAAAACGCCTACA 60.338 52.381 0.00 0.00 0.00 2.74
2871 3301 2.415776 CGACCCTTAAAACGCCTACAA 58.584 47.619 0.00 0.00 0.00 2.41
2872 3302 2.158254 CGACCCTTAAAACGCCTACAAC 59.842 50.000 0.00 0.00 0.00 3.32
2873 3303 2.485426 GACCCTTAAAACGCCTACAACC 59.515 50.000 0.00 0.00 0.00 3.77
2874 3304 1.465777 CCCTTAAAACGCCTACAACCG 59.534 52.381 0.00 0.00 0.00 4.44
2875 3305 2.145536 CCTTAAAACGCCTACAACCGT 58.854 47.619 0.00 0.00 39.70 4.83
2876 3306 2.158254 CCTTAAAACGCCTACAACCGTC 59.842 50.000 0.00 0.00 36.56 4.79
2877 3307 1.794512 TAAAACGCCTACAACCGTCC 58.205 50.000 0.00 0.00 36.56 4.79
2878 3308 1.223417 AAAACGCCTACAACCGTCCG 61.223 55.000 0.00 0.00 36.56 4.79
2879 3309 3.578515 AACGCCTACAACCGTCCGG 62.579 63.158 3.76 3.76 36.56 5.14
2880 3310 3.751246 CGCCTACAACCGTCCGGA 61.751 66.667 13.54 0.00 38.96 5.14
2881 3311 2.125793 GCCTACAACCGTCCGGAC 60.126 66.667 25.28 25.28 38.96 4.79
2882 3312 2.575461 CCTACAACCGTCCGGACC 59.425 66.667 28.52 11.28 38.96 4.46
2883 3313 2.277591 CCTACAACCGTCCGGACCA 61.278 63.158 28.52 6.28 38.96 4.02
2884 3314 1.610554 CCTACAACCGTCCGGACCAT 61.611 60.000 28.52 14.21 38.96 3.55
2885 3315 0.459585 CTACAACCGTCCGGACCATG 60.460 60.000 28.52 24.18 38.96 3.66
2886 3316 2.510064 TACAACCGTCCGGACCATGC 62.510 60.000 28.52 3.72 38.96 4.06
2887 3317 4.752879 AACCGTCCGGACCATGCG 62.753 66.667 28.52 16.40 38.96 4.73
2897 3327 2.033911 ACCATGCGGTGCACATCA 59.966 55.556 20.43 15.55 46.79 3.07
2898 3328 1.603171 ACCATGCGGTGCACATCAA 60.603 52.632 20.43 0.79 46.79 2.57
2899 3329 1.138036 CCATGCGGTGCACATCAAG 59.862 57.895 20.43 11.92 43.04 3.02
2900 3330 1.307355 CCATGCGGTGCACATCAAGA 61.307 55.000 20.43 0.00 43.04 3.02
2901 3331 0.522626 CATGCGGTGCACATCAAGAA 59.477 50.000 20.43 0.00 43.04 2.52
2902 3332 1.068402 CATGCGGTGCACATCAAGAAA 60.068 47.619 20.43 0.00 43.04 2.52
2903 3333 0.310543 TGCGGTGCACATCAAGAAAC 59.689 50.000 20.43 0.00 31.71 2.78
2904 3334 0.310543 GCGGTGCACATCAAGAAACA 59.689 50.000 20.43 0.00 0.00 2.83
2905 3335 1.925946 GCGGTGCACATCAAGAAACAC 60.926 52.381 20.43 0.00 0.00 3.32
2906 3336 1.334960 CGGTGCACATCAAGAAACACC 60.335 52.381 20.43 0.00 43.26 4.16
2907 3337 1.680735 GGTGCACATCAAGAAACACCA 59.319 47.619 20.43 0.00 45.45 4.17
2908 3338 2.100584 GGTGCACATCAAGAAACACCAA 59.899 45.455 20.43 0.00 45.45 3.67
2909 3339 3.374745 GTGCACATCAAGAAACACCAAG 58.625 45.455 13.17 0.00 0.00 3.61
2910 3340 3.066621 GTGCACATCAAGAAACACCAAGA 59.933 43.478 13.17 0.00 0.00 3.02
2911 3341 3.698539 TGCACATCAAGAAACACCAAGAA 59.301 39.130 0.00 0.00 0.00 2.52
2912 3342 4.159321 TGCACATCAAGAAACACCAAGAAA 59.841 37.500 0.00 0.00 0.00 2.52
2913 3343 4.504097 GCACATCAAGAAACACCAAGAAAC 59.496 41.667 0.00 0.00 0.00 2.78
2914 3344 5.043248 CACATCAAGAAACACCAAGAAACC 58.957 41.667 0.00 0.00 0.00 3.27
2915 3345 4.099419 ACATCAAGAAACACCAAGAAACCC 59.901 41.667 0.00 0.00 0.00 4.11
2916 3346 2.685897 TCAAGAAACACCAAGAAACCCG 59.314 45.455 0.00 0.00 0.00 5.28
2917 3347 2.685897 CAAGAAACACCAAGAAACCCGA 59.314 45.455 0.00 0.00 0.00 5.14
2918 3348 3.223674 AGAAACACCAAGAAACCCGAT 57.776 42.857 0.00 0.00 0.00 4.18
2919 3349 3.562182 AGAAACACCAAGAAACCCGATT 58.438 40.909 0.00 0.00 0.00 3.34
2920 3350 3.958147 AGAAACACCAAGAAACCCGATTT 59.042 39.130 0.00 0.00 0.00 2.17
2921 3351 4.404394 AGAAACACCAAGAAACCCGATTTT 59.596 37.500 0.00 0.00 0.00 1.82
2922 3352 4.746535 AACACCAAGAAACCCGATTTTT 57.253 36.364 0.00 0.00 0.00 1.94
2970 3400 7.191593 AGTAAATTCGGAAACTATACACCCT 57.808 36.000 0.00 0.00 0.00 4.34
2971 3401 8.310122 AGTAAATTCGGAAACTATACACCCTA 57.690 34.615 0.00 0.00 0.00 3.53
2972 3402 8.761689 AGTAAATTCGGAAACTATACACCCTAA 58.238 33.333 0.00 0.00 0.00 2.69
2973 3403 9.551734 GTAAATTCGGAAACTATACACCCTAAT 57.448 33.333 0.00 0.00 0.00 1.73
2974 3404 8.446599 AAATTCGGAAACTATACACCCTAATG 57.553 34.615 0.00 0.00 0.00 1.90
2975 3405 5.540400 TCGGAAACTATACACCCTAATGG 57.460 43.478 0.00 0.00 41.37 3.16
2976 3406 5.210430 TCGGAAACTATACACCCTAATGGA 58.790 41.667 0.00 0.00 38.00 3.41
2977 3407 5.303589 TCGGAAACTATACACCCTAATGGAG 59.696 44.000 0.00 0.00 38.00 3.86
2978 3408 5.303589 CGGAAACTATACACCCTAATGGAGA 59.696 44.000 0.00 0.00 38.00 3.71
2979 3409 6.183360 CGGAAACTATACACCCTAATGGAGAA 60.183 42.308 0.00 0.00 38.00 2.87
2980 3410 7.571025 GGAAACTATACACCCTAATGGAGAAA 58.429 38.462 0.00 0.00 38.00 2.52
2981 3411 8.050930 GGAAACTATACACCCTAATGGAGAAAA 58.949 37.037 0.00 0.00 38.00 2.29
2982 3412 9.457436 GAAACTATACACCCTAATGGAGAAAAA 57.543 33.333 0.00 0.00 38.00 1.94
2983 3413 9.990868 AAACTATACACCCTAATGGAGAAAAAT 57.009 29.630 0.00 0.00 38.00 1.82
2984 3414 9.628500 AACTATACACCCTAATGGAGAAAAATC 57.372 33.333 0.00 0.00 38.00 2.17
2985 3415 8.778059 ACTATACACCCTAATGGAGAAAAATCA 58.222 33.333 0.00 0.00 38.00 2.57
2986 3416 9.627123 CTATACACCCTAATGGAGAAAAATCAA 57.373 33.333 0.00 0.00 38.00 2.57
2987 3417 8.893563 ATACACCCTAATGGAGAAAAATCAAA 57.106 30.769 0.00 0.00 38.00 2.69
2988 3418 7.610580 ACACCCTAATGGAGAAAAATCAAAA 57.389 32.000 0.00 0.00 38.00 2.44
2989 3419 7.670364 ACACCCTAATGGAGAAAAATCAAAAG 58.330 34.615 0.00 0.00 38.00 2.27
2990 3420 7.290014 ACACCCTAATGGAGAAAAATCAAAAGT 59.710 33.333 0.00 0.00 38.00 2.66
2991 3421 8.802267 CACCCTAATGGAGAAAAATCAAAAGTA 58.198 33.333 0.00 0.00 38.00 2.24
2992 3422 9.547279 ACCCTAATGGAGAAAAATCAAAAGTAT 57.453 29.630 0.00 0.00 38.00 2.12
2997 3427 7.227049 TGGAGAAAAATCAAAAGTATCACCC 57.773 36.000 0.00 0.00 0.00 4.61
2998 3428 6.210584 TGGAGAAAAATCAAAAGTATCACCCC 59.789 38.462 0.00 0.00 0.00 4.95
2999 3429 6.267496 AGAAAAATCAAAAGTATCACCCCG 57.733 37.500 0.00 0.00 0.00 5.73
3000 3430 5.773176 AGAAAAATCAAAAGTATCACCCCGT 59.227 36.000 0.00 0.00 0.00 5.28
3001 3431 5.638596 AAAATCAAAAGTATCACCCCGTC 57.361 39.130 0.00 0.00 0.00 4.79
3002 3432 2.373540 TCAAAAGTATCACCCCGTCG 57.626 50.000 0.00 0.00 0.00 5.12
3003 3433 1.066716 TCAAAAGTATCACCCCGTCGG 60.067 52.381 3.60 3.60 37.81 4.79
3004 3434 0.392060 AAAAGTATCACCCCGTCGGC 60.392 55.000 5.50 0.00 33.26 5.54
3005 3435 2.248086 AAAGTATCACCCCGTCGGCC 62.248 60.000 5.50 0.00 33.26 6.13
3006 3436 3.152400 GTATCACCCCGTCGGCCT 61.152 66.667 5.50 0.00 33.26 5.19
3007 3437 2.364579 TATCACCCCGTCGGCCTT 60.365 61.111 5.50 0.00 33.26 4.35
3008 3438 2.428925 TATCACCCCGTCGGCCTTC 61.429 63.158 5.50 0.00 33.26 3.46
3009 3439 2.866523 TATCACCCCGTCGGCCTTCT 62.867 60.000 5.50 0.00 33.26 2.85
3010 3440 4.760047 CACCCCGTCGGCCTTCTG 62.760 72.222 5.50 0.00 33.26 3.02
3012 3442 4.016706 CCCCGTCGGCCTTCTGTT 62.017 66.667 5.50 0.00 0.00 3.16
3013 3443 2.742372 CCCGTCGGCCTTCTGTTG 60.742 66.667 5.50 0.00 0.00 3.33
3014 3444 2.742372 CCGTCGGCCTTCTGTTGG 60.742 66.667 0.00 0.00 0.00 3.77
3015 3445 2.342279 CGTCGGCCTTCTGTTGGA 59.658 61.111 0.00 0.00 0.00 3.53
3016 3446 1.301401 CGTCGGCCTTCTGTTGGAA 60.301 57.895 0.00 0.00 0.00 3.53
3017 3447 0.882927 CGTCGGCCTTCTGTTGGAAA 60.883 55.000 0.00 0.00 33.07 3.13
3029 3459 2.394545 GTTGGAAACGGGACTTTTCG 57.605 50.000 0.00 0.00 45.79 3.46
3030 3460 1.002142 GTTGGAAACGGGACTTTTCGG 60.002 52.381 0.00 0.00 45.79 4.30
3031 3461 1.167781 TGGAAACGGGACTTTTCGGC 61.168 55.000 0.00 0.00 45.79 5.54
3032 3462 1.577922 GAAACGGGACTTTTCGGCC 59.422 57.895 0.00 0.00 36.88 6.13
3033 3463 1.152922 AAACGGGACTTTTCGGCCA 60.153 52.632 2.24 0.00 0.00 5.36
3034 3464 0.752376 AAACGGGACTTTTCGGCCAA 60.752 50.000 2.24 0.00 0.00 4.52
3035 3465 1.449726 AACGGGACTTTTCGGCCAAC 61.450 55.000 2.24 0.00 0.00 3.77
3036 3466 2.622962 CGGGACTTTTCGGCCAACC 61.623 63.158 2.24 0.00 0.00 3.77
3049 3479 2.984871 CCAACCGTTGGCCAAAAAG 58.015 52.632 22.47 14.30 45.17 2.27
3050 3480 0.531753 CCAACCGTTGGCCAAAAAGG 60.532 55.000 22.47 24.49 45.17 3.11
3051 3481 0.461961 CAACCGTTGGCCAAAAAGGA 59.538 50.000 30.95 5.71 41.22 3.36
3060 3490 2.739292 GGCCAAAAAGGACTTTTCGAC 58.261 47.619 10.18 3.22 44.70 4.20
3061 3491 2.545113 GGCCAAAAAGGACTTTTCGACC 60.545 50.000 10.18 8.22 44.70 4.79
3062 3492 2.100087 GCCAAAAAGGACTTTTCGACCA 59.900 45.455 10.18 0.00 41.45 4.02
3063 3493 3.429684 GCCAAAAAGGACTTTTCGACCAA 60.430 43.478 10.18 0.00 41.45 3.67
3064 3494 4.359706 CCAAAAAGGACTTTTCGACCAAG 58.640 43.478 10.18 2.55 41.45 3.61
3065 3495 3.710326 AAAAGGACTTTTCGACCAAGC 57.290 42.857 4.29 0.00 38.27 4.01
3066 3496 2.640316 AAGGACTTTTCGACCAAGCT 57.360 45.000 3.83 0.00 0.00 3.74
3067 3497 2.640316 AGGACTTTTCGACCAAGCTT 57.360 45.000 0.00 0.00 0.00 3.74
3068 3498 2.932261 AGGACTTTTCGACCAAGCTTT 58.068 42.857 0.00 0.00 0.00 3.51
3069 3499 2.618709 AGGACTTTTCGACCAAGCTTTG 59.381 45.455 0.00 0.00 0.00 2.77
3070 3500 8.779758 AAAAGGACTTTTCGACCAAGCTTTGG 62.780 42.308 11.87 11.87 46.28 3.28
3079 3509 2.330440 CCAAGCTTTGGCCAAAAAGT 57.670 45.000 29.93 15.42 45.17 2.66
3080 3510 3.467374 CCAAGCTTTGGCCAAAAAGTA 57.533 42.857 29.93 9.52 45.17 2.24
3081 3511 3.130633 CCAAGCTTTGGCCAAAAAGTAC 58.869 45.455 29.93 17.03 45.17 2.73
3082 3512 3.181466 CCAAGCTTTGGCCAAAAAGTACT 60.181 43.478 29.93 18.76 45.17 2.73
3083 3513 4.441792 CAAGCTTTGGCCAAAAAGTACTT 58.558 39.130 29.93 22.58 39.02 2.24
3084 3514 4.753516 AGCTTTGGCCAAAAAGTACTTT 57.246 36.364 29.93 15.22 39.02 2.66
3085 3515 5.097742 AGCTTTGGCCAAAAAGTACTTTT 57.902 34.783 29.93 24.66 40.74 2.27
3086 3516 5.116180 AGCTTTGGCCAAAAAGTACTTTTC 58.884 37.500 29.93 18.62 39.33 2.29
3087 3517 4.026062 GCTTTGGCCAAAAAGTACTTTTCG 60.026 41.667 29.93 20.47 41.45 3.46
3088 3518 3.719173 TGGCCAAAAAGTACTTTTCGG 57.281 42.857 27.03 27.03 41.45 4.30
3089 3519 2.223852 TGGCCAAAAAGTACTTTTCGGC 60.224 45.455 38.27 38.27 43.34 5.54
3090 3520 2.400399 GCCAAAAAGTACTTTTCGGCC 58.600 47.619 37.07 24.96 41.45 6.13
3091 3521 2.223852 GCCAAAAAGTACTTTTCGGCCA 60.224 45.455 37.07 0.00 41.45 5.36
3092 3522 3.738590 GCCAAAAAGTACTTTTCGGCCAA 60.739 43.478 37.07 0.00 41.45 4.52
3093 3523 3.799963 CCAAAAAGTACTTTTCGGCCAAC 59.200 43.478 28.90 0.00 41.45 3.77
3094 3524 4.425520 CAAAAAGTACTTTTCGGCCAACA 58.574 39.130 28.90 0.00 41.45 3.33
3095 3525 3.982576 AAAGTACTTTTCGGCCAACAG 57.017 42.857 15.22 1.51 0.00 3.16
3096 3526 2.632987 AGTACTTTTCGGCCAACAGT 57.367 45.000 2.24 7.68 0.00 3.55
3097 3527 2.927028 AGTACTTTTCGGCCAACAGTT 58.073 42.857 2.24 0.00 0.00 3.16
3098 3528 2.616842 AGTACTTTTCGGCCAACAGTTG 59.383 45.455 2.24 6.28 0.00 3.16
3099 3529 8.774605 AAAAGTACTTTTCGGCCAACAGTTGG 62.775 42.308 26.09 26.09 44.93 3.77
3108 3538 1.402787 CCAACAGTTGGCCAAAGAGT 58.597 50.000 22.47 16.01 45.17 3.24
3109 3539 1.338020 CCAACAGTTGGCCAAAGAGTC 59.662 52.381 22.47 7.42 45.17 3.36
3110 3540 1.338020 CAACAGTTGGCCAAAGAGTCC 59.662 52.381 22.47 6.57 0.00 3.85
3111 3541 0.178990 ACAGTTGGCCAAAGAGTCCC 60.179 55.000 22.47 5.74 0.00 4.46
3112 3542 0.111253 CAGTTGGCCAAAGAGTCCCT 59.889 55.000 22.47 8.35 0.00 4.20
3113 3543 0.402121 AGTTGGCCAAAGAGTCCCTC 59.598 55.000 22.47 4.06 0.00 4.30
3114 3544 0.402121 GTTGGCCAAAGAGTCCCTCT 59.598 55.000 22.47 0.00 43.37 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.767902 TCCTGAGATATTCCCAAAAATCTTCG 59.232 38.462 0.00 0.00 0.00 3.79
56 58 1.968493 GGTTTGGGGGAGAAAAGTTCC 59.032 52.381 0.00 0.00 0.00 3.62
59 61 1.856920 TCAGGTTTGGGGGAGAAAAGT 59.143 47.619 0.00 0.00 0.00 2.66
233 270 8.610035 CCGTATATAGTATGCGACAAGAGATTA 58.390 37.037 8.65 0.00 0.00 1.75
237 274 6.179504 ACCGTATATAGTATGCGACAAGAG 57.820 41.667 8.65 0.00 0.00 2.85
247 284 7.528996 TGCCTGTGTAAACCGTATATAGTAT 57.471 36.000 0.00 0.00 0.00 2.12
251 288 6.584488 ACAATGCCTGTGTAAACCGTATATA 58.416 36.000 0.00 0.00 36.69 0.86
252 289 5.433526 ACAATGCCTGTGTAAACCGTATAT 58.566 37.500 0.00 0.00 36.69 0.86
253 290 4.834534 ACAATGCCTGTGTAAACCGTATA 58.165 39.130 0.00 0.00 36.69 1.47
259 296 3.853307 GCACTGACAATGCCTGTGTAAAC 60.853 47.826 8.16 0.00 38.84 2.01
264 301 0.669619 TTGCACTGACAATGCCTGTG 59.330 50.000 6.40 2.48 42.69 3.66
287 329 0.534412 TCAACTCTCAGCTGCTAGCC 59.466 55.000 13.29 0.00 43.77 3.93
375 426 6.001460 CCCAACTCAACCTGTTCTTACAATA 58.999 40.000 0.00 0.00 32.92 1.90
448 499 9.797642 ATGAATGGCAGAAATAGTTGTATATCA 57.202 29.630 0.00 0.00 0.00 2.15
562 632 4.442612 GAGTAATCTCAAGATGCAGAGGCA 60.443 45.833 0.00 0.00 46.07 4.75
563 633 4.057432 GAGTAATCTCAAGATGCAGAGGC 58.943 47.826 0.00 0.00 40.18 4.70
564 634 4.344679 AGGAGTAATCTCAAGATGCAGAGG 59.655 45.833 0.00 0.00 42.05 3.69
586 658 7.790027 TCAGAGAAAAAGAGAGGGATTATGAG 58.210 38.462 0.00 0.00 0.00 2.90
649 721 3.316868 GGATCAGCACTACCACTAGTCTC 59.683 52.174 0.00 0.00 30.03 3.36
658 730 1.521681 GCCGTGGATCAGCACTACC 60.522 63.158 0.00 0.00 0.00 3.18
678 750 2.034687 CCCCTGTTCTGCCACCTG 59.965 66.667 0.00 0.00 0.00 4.00
765 839 1.297364 GGTGGGCTGCGGTAAGTAA 59.703 57.895 0.00 0.00 0.00 2.24
766 840 1.268992 ATGGTGGGCTGCGGTAAGTA 61.269 55.000 0.00 0.00 0.00 2.24
768 842 1.819632 GATGGTGGGCTGCGGTAAG 60.820 63.158 0.00 0.00 0.00 2.34
792 870 3.318313 GAATGGTATCTGGGAAGGAGGA 58.682 50.000 0.00 0.00 0.00 3.71
793 871 2.373502 GGAATGGTATCTGGGAAGGAGG 59.626 54.545 0.00 0.00 0.00 4.30
795 873 2.021042 AGGGAATGGTATCTGGGAAGGA 60.021 50.000 0.00 0.00 0.00 3.36
796 874 2.373502 GAGGGAATGGTATCTGGGAAGG 59.626 54.545 0.00 0.00 0.00 3.46
798 876 2.294195 TGGAGGGAATGGTATCTGGGAA 60.294 50.000 0.00 0.00 0.00 3.97
799 877 1.296832 TGGAGGGAATGGTATCTGGGA 59.703 52.381 0.00 0.00 0.00 4.37
825 912 1.210967 TCCTTGCGGTGGTTTATAGGG 59.789 52.381 0.00 0.00 0.00 3.53
826 913 2.285977 GTCCTTGCGGTGGTTTATAGG 58.714 52.381 0.00 0.00 0.00 2.57
837 924 0.668706 CTCTGTGAGTGTCCTTGCGG 60.669 60.000 0.00 0.00 0.00 5.69
857 955 1.302351 GCTGAGTGCTGTTGCCTCT 60.302 57.895 0.00 0.00 37.38 3.69
858 956 1.575576 CTGCTGAGTGCTGTTGCCTC 61.576 60.000 0.00 0.00 43.37 4.70
859 957 1.600076 CTGCTGAGTGCTGTTGCCT 60.600 57.895 0.00 0.00 43.37 4.75
860 958 2.952245 CTGCTGAGTGCTGTTGCC 59.048 61.111 0.00 0.00 43.37 4.52
861 959 2.254651 GCTGCTGAGTGCTGTTGC 59.745 61.111 0.00 0.00 43.37 4.17
862 960 1.898459 CTCGCTGCTGAGTGCTGTTG 61.898 60.000 11.56 0.00 43.37 3.33
863 961 1.667191 CTCGCTGCTGAGTGCTGTT 60.667 57.895 11.56 0.00 43.37 3.16
864 962 2.048409 CTCGCTGCTGAGTGCTGT 60.048 61.111 11.56 0.00 43.37 4.40
865 963 3.488978 GCTCGCTGCTGAGTGCTG 61.489 66.667 17.94 0.00 43.37 4.41
866 964 3.526210 TTGCTCGCTGCTGAGTGCT 62.526 57.895 18.70 0.00 43.37 4.40
867 965 3.024782 CTTGCTCGCTGCTGAGTGC 62.025 63.158 17.94 13.01 43.37 4.40
868 966 0.947660 TTCTTGCTCGCTGCTGAGTG 60.948 55.000 17.94 11.30 43.37 3.51
869 967 0.250038 TTTCTTGCTCGCTGCTGAGT 60.250 50.000 17.94 0.00 43.37 3.41
870 968 0.165511 GTTTCTTGCTCGCTGCTGAG 59.834 55.000 14.31 14.31 43.37 3.35
871 969 0.532640 TGTTTCTTGCTCGCTGCTGA 60.533 50.000 0.00 0.00 43.37 4.26
872 970 0.308684 TTGTTTCTTGCTCGCTGCTG 59.691 50.000 0.00 0.00 43.37 4.41
873 971 1.024271 TTTGTTTCTTGCTCGCTGCT 58.976 45.000 0.00 0.00 43.37 4.24
874 972 1.123655 GTTTGTTTCTTGCTCGCTGC 58.876 50.000 0.00 0.00 43.25 5.25
875 973 1.388888 CGTTTGTTTCTTGCTCGCTG 58.611 50.000 0.00 0.00 0.00 5.18
876 974 0.317020 GCGTTTGTTTCTTGCTCGCT 60.317 50.000 0.00 0.00 39.26 4.93
877 975 0.317020 AGCGTTTGTTTCTTGCTCGC 60.317 50.000 0.00 0.00 41.96 5.03
878 976 1.663494 GAGCGTTTGTTTCTTGCTCG 58.337 50.000 0.00 0.00 42.12 5.03
879 977 1.260561 TCGAGCGTTTGTTTCTTGCTC 59.739 47.619 2.57 2.57 46.48 4.26
880 978 1.261619 CTCGAGCGTTTGTTTCTTGCT 59.738 47.619 0.00 0.00 38.89 3.91
881 979 1.663494 CTCGAGCGTTTGTTTCTTGC 58.337 50.000 0.00 0.00 0.00 4.01
882 980 1.663494 GCTCGAGCGTTTGTTTCTTG 58.337 50.000 23.61 0.00 0.00 3.02
902 1000 2.481568 GGAAAATGCTTTGCTTTGCCTC 59.518 45.455 0.00 0.00 30.64 4.70
903 1001 2.497138 GGAAAATGCTTTGCTTTGCCT 58.503 42.857 0.00 0.00 30.64 4.75
904 1002 1.536766 GGGAAAATGCTTTGCTTTGCC 59.463 47.619 0.00 0.00 34.08 4.52
951 1049 0.898789 ACCGGAAGCGAGAAGGAGAA 60.899 55.000 9.46 0.00 0.00 2.87
995 1093 1.741770 GACGACACAGACATGGCCC 60.742 63.158 0.00 0.00 0.00 5.80
1287 1387 5.443283 TCTTTCTTGATGCAATGCCTATCT 58.557 37.500 1.53 0.00 0.00 1.98
1443 1574 7.148289 CCAATAGCTGCCAAGATGATAATAGTG 60.148 40.741 0.00 0.00 0.00 2.74
1465 1596 3.629087 ACGTCTACTACAGGCTACCAAT 58.371 45.455 0.00 0.00 0.00 3.16
1466 1597 3.077484 ACGTCTACTACAGGCTACCAA 57.923 47.619 0.00 0.00 0.00 3.67
1467 1598 2.795231 ACGTCTACTACAGGCTACCA 57.205 50.000 0.00 0.00 0.00 3.25
1468 1599 5.278218 GGATTAACGTCTACTACAGGCTACC 60.278 48.000 0.00 0.00 0.00 3.18
1520 1767 4.827284 AGTGTCCGAATGAATTCTTTGGTT 59.173 37.500 11.03 0.00 34.69 3.67
1523 1770 5.625251 CAGAGTGTCCGAATGAATTCTTTG 58.375 41.667 11.03 4.98 34.69 2.77
1527 1774 3.002791 TGCAGAGTGTCCGAATGAATTC 58.997 45.455 0.00 0.00 0.00 2.17
1538 1785 2.989840 GTGACTACACATGCAGAGTGTC 59.010 50.000 25.41 15.03 46.57 3.67
1561 1808 4.067192 TGCAGCTTGATTACATATGCGAT 58.933 39.130 1.58 0.00 34.27 4.58
1579 1829 1.153901 CTTTTGAGGGCGCATGCAG 60.154 57.895 19.57 11.69 45.35 4.41
1588 1838 3.457234 GTTTGTTCCTTGCTTTTGAGGG 58.543 45.455 0.00 0.00 33.73 4.30
1605 1855 4.766404 AAGCTTCTTTATGGGTCGTTTG 57.234 40.909 0.00 0.00 0.00 2.93
1612 1862 4.488879 GCAGTGAAAAGCTTCTTTATGGG 58.511 43.478 0.00 0.00 32.33 4.00
1636 1886 4.899048 TTGGAACACAGCACAGAGCACA 62.899 50.000 0.00 0.00 43.30 4.57
1637 1887 2.348440 TTGGAACACAGCACAGAGCAC 61.348 52.381 0.00 0.00 43.30 4.40
1638 1888 0.107263 TTGGAACACAGCACAGAGCA 60.107 50.000 0.00 0.00 43.30 4.26
1639 1889 1.002033 CTTTGGAACACAGCACAGAGC 60.002 52.381 0.00 0.00 39.29 4.09
1640 1890 2.289002 GACTTTGGAACACAGCACAGAG 59.711 50.000 0.00 0.00 40.26 3.35
1641 1891 2.288666 GACTTTGGAACACAGCACAGA 58.711 47.619 0.00 0.00 40.26 3.41
1642 1892 1.003545 CGACTTTGGAACACAGCACAG 60.004 52.381 0.00 0.00 40.26 3.66
1643 1893 1.013596 CGACTTTGGAACACAGCACA 58.986 50.000 0.00 0.00 40.26 4.57
1644 1894 0.307760 CCGACTTTGGAACACAGCAC 59.692 55.000 0.00 0.00 40.26 4.40
1645 1895 0.817634 CCCGACTTTGGAACACAGCA 60.818 55.000 0.00 0.00 40.26 4.41
1646 1896 0.534203 TCCCGACTTTGGAACACAGC 60.534 55.000 0.00 0.00 40.26 4.40
1654 1904 2.554370 TTTACTGGTCCCGACTTTGG 57.446 50.000 0.00 0.00 0.00 3.28
1659 1909 7.119262 CCATCATATATTTTTACTGGTCCCGAC 59.881 40.741 0.00 0.00 0.00 4.79
1661 1911 7.165485 TCCATCATATATTTTTACTGGTCCCG 58.835 38.462 0.00 0.00 0.00 5.14
1695 2012 2.460918 CAACCATACTCGAGCGGTTAG 58.539 52.381 25.53 18.38 39.73 2.34
1697 2014 0.108329 CCAACCATACTCGAGCGGTT 60.108 55.000 22.29 22.29 42.45 4.44
1698 2015 1.515954 CCAACCATACTCGAGCGGT 59.484 57.895 13.61 14.03 0.00 5.68
1699 2016 1.227263 CCCAACCATACTCGAGCGG 60.227 63.158 13.61 13.33 0.00 5.52
1700 2017 1.883084 GCCCAACCATACTCGAGCG 60.883 63.158 13.61 0.73 0.00 5.03
1701 2018 0.179045 ATGCCCAACCATACTCGAGC 60.179 55.000 13.61 0.00 0.00 5.03
1707 2024 0.395586 TCTGCCATGCCCAACCATAC 60.396 55.000 0.00 0.00 0.00 2.39
1708 2025 0.395586 GTCTGCCATGCCCAACCATA 60.396 55.000 0.00 0.00 0.00 2.74
1710 2027 2.283101 GTCTGCCATGCCCAACCA 60.283 61.111 0.00 0.00 0.00 3.67
1711 2028 3.443045 CGTCTGCCATGCCCAACC 61.443 66.667 0.00 0.00 0.00 3.77
1712 2029 3.443045 CCGTCTGCCATGCCCAAC 61.443 66.667 0.00 0.00 0.00 3.77
1737 2065 2.872557 CAGCACATCCGCACCTTG 59.127 61.111 0.00 0.00 0.00 3.61
2103 2431 3.459232 TGCTACTACATGATGGAGCAC 57.541 47.619 20.02 0.00 35.12 4.40
2135 2495 1.018910 GAGAGCACTAGACGACCTCC 58.981 60.000 0.00 0.00 0.00 4.30
2165 2525 2.122547 TCTATCTTCCCCGGCCCC 60.123 66.667 0.00 0.00 0.00 5.80
2277 2677 2.978013 TCGATATTCGACAGCACGTAC 58.022 47.619 0.00 0.00 44.82 3.67
2329 2729 4.274865 GTGAATTTTGGAATCTCGATCGC 58.725 43.478 11.09 0.00 0.00 4.58
2378 2804 2.047274 ATCTCACACGCCCCGTTG 60.047 61.111 0.00 0.00 38.32 4.10
2379 2805 2.047274 CATCTCACACGCCCCGTT 60.047 61.111 0.00 0.00 38.32 4.44
2380 2806 2.994995 TCATCTCACACGCCCCGT 60.995 61.111 0.00 0.00 42.36 5.28
2381 2807 2.202797 CTCATCTCACACGCCCCG 60.203 66.667 0.00 0.00 0.00 5.73
2382 2808 1.676678 TAGCTCATCTCACACGCCCC 61.677 60.000 0.00 0.00 0.00 5.80
2383 2809 0.528684 GTAGCTCATCTCACACGCCC 60.529 60.000 0.00 0.00 0.00 6.13
2386 2812 1.202348 CCCTGTAGCTCATCTCACACG 60.202 57.143 0.00 0.00 0.00 4.49
2426 2852 1.263776 CAACGAAAAAGTTGCACGCA 58.736 45.000 0.00 0.00 43.87 5.24
2474 2900 4.307032 ACGACCAAACCTACTACTCCTA 57.693 45.455 0.00 0.00 0.00 2.94
2475 2901 3.166560 ACGACCAAACCTACTACTCCT 57.833 47.619 0.00 0.00 0.00 3.69
2476 2902 3.582780 CAACGACCAAACCTACTACTCC 58.417 50.000 0.00 0.00 0.00 3.85
2563 2990 2.158561 ATCGATCGCGCCATCATCCA 62.159 55.000 15.39 0.00 37.46 3.41
2577 3004 5.010282 ACTTCCAAGGCTTTTACAATCGAT 58.990 37.500 0.00 0.00 0.00 3.59
2579 3006 4.475944 CACTTCCAAGGCTTTTACAATCG 58.524 43.478 0.00 0.00 0.00 3.34
2594 3021 0.722676 ACCTATCCTCCCCACTTCCA 59.277 55.000 0.00 0.00 0.00 3.53
2613 3040 5.068855 TGCCAAATTTGAGACATCAAGAACA 59.931 36.000 19.86 0.00 45.89 3.18
2627 3054 0.667184 GTCCGCTGGTGCCAAATTTG 60.667 55.000 11.40 11.40 35.36 2.32
2668 3098 3.678548 GTCTACACTTTTAGCCGGAACAG 59.321 47.826 5.05 0.00 0.00 3.16
2696 3126 5.180304 CCCTCGAAGAAGAAAAGGAAAGAAG 59.820 44.000 0.00 0.00 34.09 2.85
2704 3134 4.153296 GCTCTTTCCCTCGAAGAAGAAAAG 59.847 45.833 0.00 0.00 38.05 2.27
2712 3142 0.107945 CCCTGCTCTTTCCCTCGAAG 60.108 60.000 0.00 0.00 0.00 3.79
2714 3144 0.836400 AACCCTGCTCTTTCCCTCGA 60.836 55.000 0.00 0.00 0.00 4.04
2730 3160 0.313987 CTTTCCCCGCAAAGACAACC 59.686 55.000 0.00 0.00 35.67 3.77
2764 3194 2.156098 CACTAGCAACCCGGCTAAAAA 58.844 47.619 0.00 0.00 45.13 1.94
2765 3195 1.612199 CCACTAGCAACCCGGCTAAAA 60.612 52.381 0.00 0.00 45.13 1.52
2766 3196 0.035820 CCACTAGCAACCCGGCTAAA 60.036 55.000 0.00 0.00 45.13 1.85
2767 3197 1.196104 ACCACTAGCAACCCGGCTAA 61.196 55.000 0.00 0.00 45.13 3.09
2768 3198 0.324552 TACCACTAGCAACCCGGCTA 60.325 55.000 0.00 0.00 43.70 3.93
2770 3200 0.743345 CTTACCACTAGCAACCCGGC 60.743 60.000 0.00 0.00 0.00 6.13
2771 3201 0.611714 ACTTACCACTAGCAACCCGG 59.388 55.000 0.00 0.00 0.00 5.73
2772 3202 1.722011 CACTTACCACTAGCAACCCG 58.278 55.000 0.00 0.00 0.00 5.28
2773 3203 1.271163 TGCACTTACCACTAGCAACCC 60.271 52.381 0.00 0.00 31.42 4.11
2774 3204 2.178912 TGCACTTACCACTAGCAACC 57.821 50.000 0.00 0.00 31.42 3.77
2775 3205 3.314080 TGTTTGCACTTACCACTAGCAAC 59.686 43.478 0.00 0.00 43.94 4.17
2776 3206 3.546724 TGTTTGCACTTACCACTAGCAA 58.453 40.909 0.00 0.00 42.74 3.91
2777 3207 3.201353 TGTTTGCACTTACCACTAGCA 57.799 42.857 0.00 0.00 0.00 3.49
2778 3208 3.564225 ACTTGTTTGCACTTACCACTAGC 59.436 43.478 0.00 0.00 0.00 3.42
2779 3209 4.554723 GCACTTGTTTGCACTTACCACTAG 60.555 45.833 0.00 0.00 42.49 2.57
2780 3210 3.314080 GCACTTGTTTGCACTTACCACTA 59.686 43.478 0.00 0.00 42.49 2.74
2781 3211 2.099098 GCACTTGTTTGCACTTACCACT 59.901 45.455 0.00 0.00 42.49 4.00
2782 3212 2.459934 GCACTTGTTTGCACTTACCAC 58.540 47.619 0.00 0.00 42.49 4.16
2783 3213 2.861462 GCACTTGTTTGCACTTACCA 57.139 45.000 0.00 0.00 42.49 3.25
2791 3221 4.492409 GCTTACAACTTTGCACTTGTTTGC 60.492 41.667 8.48 9.28 43.31 3.68
2792 3222 4.624882 TGCTTACAACTTTGCACTTGTTTG 59.375 37.500 8.48 1.20 32.77 2.93
2793 3223 4.815269 TGCTTACAACTTTGCACTTGTTT 58.185 34.783 8.48 0.00 32.77 2.83
2794 3224 4.448537 TGCTTACAACTTTGCACTTGTT 57.551 36.364 8.48 1.46 32.77 2.83
2795 3225 4.499696 GGATGCTTACAACTTTGCACTTGT 60.500 41.667 8.29 8.29 38.29 3.16
2796 3226 3.983344 GGATGCTTACAACTTTGCACTTG 59.017 43.478 0.00 0.00 38.29 3.16
2797 3227 3.636300 TGGATGCTTACAACTTTGCACTT 59.364 39.130 0.00 0.00 38.29 3.16
2798 3228 3.221771 TGGATGCTTACAACTTTGCACT 58.778 40.909 0.00 0.00 38.29 4.40
2799 3229 3.641437 TGGATGCTTACAACTTTGCAC 57.359 42.857 0.00 0.00 38.29 4.57
2800 3230 3.056678 CCATGGATGCTTACAACTTTGCA 60.057 43.478 5.56 0.00 39.83 4.08
2801 3231 3.514645 CCATGGATGCTTACAACTTTGC 58.485 45.455 5.56 0.00 0.00 3.68
2802 3232 3.056678 TGCCATGGATGCTTACAACTTTG 60.057 43.478 18.40 0.00 0.00 2.77
2803 3233 3.164268 TGCCATGGATGCTTACAACTTT 58.836 40.909 18.40 0.00 0.00 2.66
2804 3234 2.756760 CTGCCATGGATGCTTACAACTT 59.243 45.455 18.40 0.00 0.00 2.66
2805 3235 2.372264 CTGCCATGGATGCTTACAACT 58.628 47.619 18.40 0.00 0.00 3.16
2806 3236 1.406539 CCTGCCATGGATGCTTACAAC 59.593 52.381 18.40 0.00 0.00 3.32
2807 3237 1.284491 TCCTGCCATGGATGCTTACAA 59.716 47.619 18.40 0.00 0.00 2.41
2808 3238 0.918258 TCCTGCCATGGATGCTTACA 59.082 50.000 18.40 0.17 0.00 2.41
2809 3239 1.602311 CTCCTGCCATGGATGCTTAC 58.398 55.000 18.40 0.00 35.30 2.34
2810 3240 0.475475 CCTCCTGCCATGGATGCTTA 59.525 55.000 18.40 0.00 35.30 3.09
2811 3241 1.229359 CCTCCTGCCATGGATGCTT 59.771 57.895 18.40 0.00 35.30 3.91
2812 3242 2.005266 ACCTCCTGCCATGGATGCT 61.005 57.895 18.40 0.00 35.30 3.79
2813 3243 1.826921 CACCTCCTGCCATGGATGC 60.827 63.158 18.40 0.00 35.30 3.91
2814 3244 1.152819 CCACCTCCTGCCATGGATG 60.153 63.158 18.40 6.69 35.30 3.51
2815 3245 0.327480 TACCACCTCCTGCCATGGAT 60.327 55.000 18.40 0.00 35.30 3.41
2816 3246 0.548926 TTACCACCTCCTGCCATGGA 60.549 55.000 18.40 0.00 36.04 3.41
2817 3247 0.107017 CTTACCACCTCCTGCCATGG 60.107 60.000 7.63 7.63 38.26 3.66
2818 3248 0.107017 CCTTACCACCTCCTGCCATG 60.107 60.000 0.00 0.00 0.00 3.66
2819 3249 1.281925 CCCTTACCACCTCCTGCCAT 61.282 60.000 0.00 0.00 0.00 4.40
2820 3250 1.923395 CCCTTACCACCTCCTGCCA 60.923 63.158 0.00 0.00 0.00 4.92
2821 3251 2.998949 CCCTTACCACCTCCTGCC 59.001 66.667 0.00 0.00 0.00 4.85
2822 3252 1.926426 ATGCCCTTACCACCTCCTGC 61.926 60.000 0.00 0.00 0.00 4.85
2823 3253 0.181350 GATGCCCTTACCACCTCCTG 59.819 60.000 0.00 0.00 0.00 3.86
2824 3254 0.044855 AGATGCCCTTACCACCTCCT 59.955 55.000 0.00 0.00 0.00 3.69
2825 3255 0.470341 GAGATGCCCTTACCACCTCC 59.530 60.000 0.00 0.00 0.00 4.30
2826 3256 0.470341 GGAGATGCCCTTACCACCTC 59.530 60.000 0.00 0.00 0.00 3.85
2827 3257 0.253160 TGGAGATGCCCTTACCACCT 60.253 55.000 0.00 0.00 34.97 4.00
2828 3258 0.623723 TTGGAGATGCCCTTACCACC 59.376 55.000 0.00 0.00 34.97 4.61
2829 3259 1.751437 GTTGGAGATGCCCTTACCAC 58.249 55.000 0.00 0.00 34.97 4.16
2830 3260 0.251916 CGTTGGAGATGCCCTTACCA 59.748 55.000 0.00 0.00 34.97 3.25
2831 3261 1.095807 GCGTTGGAGATGCCCTTACC 61.096 60.000 0.00 0.00 34.03 2.85
2832 3262 2.394604 GCGTTGGAGATGCCCTTAC 58.605 57.895 0.00 0.00 34.03 2.34
2833 3263 4.954933 GCGTTGGAGATGCCCTTA 57.045 55.556 0.00 0.00 34.03 2.69
2838 3268 3.195698 GGTCGGCGTTGGAGATGC 61.196 66.667 6.85 0.00 39.65 3.91
2839 3269 2.511600 GGGTCGGCGTTGGAGATG 60.512 66.667 6.85 0.00 0.00 2.90
2840 3270 0.974010 TAAGGGTCGGCGTTGGAGAT 60.974 55.000 6.85 0.00 0.00 2.75
2841 3271 1.186917 TTAAGGGTCGGCGTTGGAGA 61.187 55.000 6.85 0.00 0.00 3.71
2842 3272 0.320946 TTTAAGGGTCGGCGTTGGAG 60.321 55.000 6.85 0.00 0.00 3.86
2843 3273 0.108207 TTTTAAGGGTCGGCGTTGGA 59.892 50.000 6.85 0.00 0.00 3.53
2844 3274 0.239082 GTTTTAAGGGTCGGCGTTGG 59.761 55.000 6.85 0.00 0.00 3.77
2845 3275 0.110554 CGTTTTAAGGGTCGGCGTTG 60.111 55.000 6.85 0.00 0.00 4.10
2846 3276 1.844771 GCGTTTTAAGGGTCGGCGTT 61.845 55.000 6.85 0.00 0.00 4.84
2847 3277 2.319841 GCGTTTTAAGGGTCGGCGT 61.320 57.895 6.85 0.00 0.00 5.68
2848 3278 2.477396 GCGTTTTAAGGGTCGGCG 59.523 61.111 0.00 0.00 0.00 6.46
2849 3279 0.391528 TAGGCGTTTTAAGGGTCGGC 60.392 55.000 0.00 0.00 46.29 5.54
2850 3280 1.338011 TGTAGGCGTTTTAAGGGTCGG 60.338 52.381 0.00 0.00 0.00 4.79
2851 3281 2.083167 TGTAGGCGTTTTAAGGGTCG 57.917 50.000 0.00 0.00 0.00 4.79
2852 3282 2.485426 GGTTGTAGGCGTTTTAAGGGTC 59.515 50.000 0.00 0.00 0.00 4.46
2853 3283 2.507484 GGTTGTAGGCGTTTTAAGGGT 58.493 47.619 0.00 0.00 0.00 4.34
2854 3284 1.465777 CGGTTGTAGGCGTTTTAAGGG 59.534 52.381 0.00 0.00 0.00 3.95
2855 3285 2.145536 ACGGTTGTAGGCGTTTTAAGG 58.854 47.619 0.00 0.00 0.00 2.69
2856 3286 2.158254 GGACGGTTGTAGGCGTTTTAAG 59.842 50.000 0.00 0.00 0.00 1.85
2857 3287 2.142319 GGACGGTTGTAGGCGTTTTAA 58.858 47.619 0.00 0.00 0.00 1.52
2858 3288 1.794512 GGACGGTTGTAGGCGTTTTA 58.205 50.000 0.00 0.00 0.00 1.52
2859 3289 1.223417 CGGACGGTTGTAGGCGTTTT 61.223 55.000 0.00 0.00 0.00 2.43
2860 3290 1.665599 CGGACGGTTGTAGGCGTTT 60.666 57.895 0.00 0.00 0.00 3.60
2861 3291 2.048877 CGGACGGTTGTAGGCGTT 60.049 61.111 0.00 0.00 0.00 4.84
2862 3292 4.060038 CCGGACGGTTGTAGGCGT 62.060 66.667 0.00 0.00 0.00 5.68
2863 3293 3.751246 TCCGGACGGTTGTAGGCG 61.751 66.667 10.90 0.00 36.47 5.52
2864 3294 2.125793 GTCCGGACGGTTGTAGGC 60.126 66.667 20.85 0.00 36.47 3.93
2865 3295 1.610554 ATGGTCCGGACGGTTGTAGG 61.611 60.000 27.68 0.00 36.47 3.18
2866 3296 0.459585 CATGGTCCGGACGGTTGTAG 60.460 60.000 27.68 9.60 36.47 2.74
2867 3297 1.592743 CATGGTCCGGACGGTTGTA 59.407 57.895 27.68 10.19 36.47 2.41
2868 3298 2.345991 CATGGTCCGGACGGTTGT 59.654 61.111 27.68 9.06 36.47 3.32
2869 3299 3.124921 GCATGGTCCGGACGGTTG 61.125 66.667 27.68 23.17 36.47 3.77
2870 3300 4.752879 CGCATGGTCCGGACGGTT 62.753 66.667 27.68 12.34 36.47 4.44
2881 3311 1.138036 CTTGATGTGCACCGCATGG 59.862 57.895 15.69 5.01 41.91 3.66
2882 3312 0.522626 TTCTTGATGTGCACCGCATG 59.477 50.000 15.69 13.83 41.91 4.06
2883 3313 1.068333 GTTTCTTGATGTGCACCGCAT 60.068 47.619 15.69 0.24 41.91 4.73
2884 3314 0.310543 GTTTCTTGATGTGCACCGCA 59.689 50.000 15.69 9.60 35.60 5.69
2885 3315 0.310543 TGTTTCTTGATGTGCACCGC 59.689 50.000 15.69 6.75 0.00 5.68
2886 3316 1.334960 GGTGTTTCTTGATGTGCACCG 60.335 52.381 15.69 0.00 37.28 4.94
2887 3317 1.680735 TGGTGTTTCTTGATGTGCACC 59.319 47.619 15.69 0.00 44.60 5.01
2888 3318 3.066621 TCTTGGTGTTTCTTGATGTGCAC 59.933 43.478 10.75 10.75 0.00 4.57
2889 3319 3.286353 TCTTGGTGTTTCTTGATGTGCA 58.714 40.909 0.00 0.00 0.00 4.57
2890 3320 3.988379 TCTTGGTGTTTCTTGATGTGC 57.012 42.857 0.00 0.00 0.00 4.57
2891 3321 5.043248 GGTTTCTTGGTGTTTCTTGATGTG 58.957 41.667 0.00 0.00 0.00 3.21
2892 3322 4.099419 GGGTTTCTTGGTGTTTCTTGATGT 59.901 41.667 0.00 0.00 0.00 3.06
2893 3323 4.620982 GGGTTTCTTGGTGTTTCTTGATG 58.379 43.478 0.00 0.00 0.00 3.07
2894 3324 3.317993 CGGGTTTCTTGGTGTTTCTTGAT 59.682 43.478 0.00 0.00 0.00 2.57
2895 3325 2.685897 CGGGTTTCTTGGTGTTTCTTGA 59.314 45.455 0.00 0.00 0.00 3.02
2896 3326 2.685897 TCGGGTTTCTTGGTGTTTCTTG 59.314 45.455 0.00 0.00 0.00 3.02
2897 3327 3.007473 TCGGGTTTCTTGGTGTTTCTT 57.993 42.857 0.00 0.00 0.00 2.52
2898 3328 2.721425 TCGGGTTTCTTGGTGTTTCT 57.279 45.000 0.00 0.00 0.00 2.52
2899 3329 4.316205 AAATCGGGTTTCTTGGTGTTTC 57.684 40.909 0.00 0.00 0.00 2.78
2900 3330 4.746535 AAAATCGGGTTTCTTGGTGTTT 57.253 36.364 0.00 0.00 0.00 2.83
2901 3331 4.746535 AAAAATCGGGTTTCTTGGTGTT 57.253 36.364 0.00 0.00 0.00 3.32
2944 3374 8.931568 AGGGTGTATAGTTTCCGAATTTACTAT 58.068 33.333 8.39 8.39 37.52 2.12
2945 3375 8.310122 AGGGTGTATAGTTTCCGAATTTACTA 57.690 34.615 0.00 0.00 0.00 1.82
2946 3376 7.191593 AGGGTGTATAGTTTCCGAATTTACT 57.808 36.000 0.00 0.00 0.00 2.24
2947 3377 8.947055 TTAGGGTGTATAGTTTCCGAATTTAC 57.053 34.615 0.00 0.00 0.00 2.01
2948 3378 9.550406 CATTAGGGTGTATAGTTTCCGAATTTA 57.450 33.333 0.00 0.00 0.00 1.40
2949 3379 7.501225 CCATTAGGGTGTATAGTTTCCGAATTT 59.499 37.037 0.00 0.00 0.00 1.82
2950 3380 6.996282 CCATTAGGGTGTATAGTTTCCGAATT 59.004 38.462 0.00 0.00 0.00 2.17
2951 3381 6.328148 TCCATTAGGGTGTATAGTTTCCGAAT 59.672 38.462 0.00 0.00 38.11 3.34
2952 3382 5.662208 TCCATTAGGGTGTATAGTTTCCGAA 59.338 40.000 0.00 0.00 38.11 4.30
2953 3383 5.210430 TCCATTAGGGTGTATAGTTTCCGA 58.790 41.667 0.00 0.00 38.11 4.55
2954 3384 5.303589 TCTCCATTAGGGTGTATAGTTTCCG 59.696 44.000 0.00 0.00 38.11 4.30
2955 3385 6.742559 TCTCCATTAGGGTGTATAGTTTCC 57.257 41.667 0.00 0.00 38.11 3.13
2956 3386 9.457436 TTTTTCTCCATTAGGGTGTATAGTTTC 57.543 33.333 0.00 0.00 38.11 2.78
2957 3387 9.990868 ATTTTTCTCCATTAGGGTGTATAGTTT 57.009 29.630 0.00 0.00 38.11 2.66
2958 3388 9.628500 GATTTTTCTCCATTAGGGTGTATAGTT 57.372 33.333 0.00 0.00 38.11 2.24
2959 3389 8.778059 TGATTTTTCTCCATTAGGGTGTATAGT 58.222 33.333 0.00 0.00 38.11 2.12
2960 3390 9.627123 TTGATTTTTCTCCATTAGGGTGTATAG 57.373 33.333 0.00 0.00 38.11 1.31
2961 3391 9.983024 TTTGATTTTTCTCCATTAGGGTGTATA 57.017 29.630 0.00 0.00 38.11 1.47
2962 3392 8.893563 TTTGATTTTTCTCCATTAGGGTGTAT 57.106 30.769 0.00 0.00 38.11 2.29
2963 3393 8.713708 TTTTGATTTTTCTCCATTAGGGTGTA 57.286 30.769 0.00 0.00 38.11 2.90
2964 3394 7.290014 ACTTTTGATTTTTCTCCATTAGGGTGT 59.710 33.333 0.00 0.00 38.11 4.16
2965 3395 7.670364 ACTTTTGATTTTTCTCCATTAGGGTG 58.330 34.615 0.00 0.00 38.11 4.61
2966 3396 7.855784 ACTTTTGATTTTTCTCCATTAGGGT 57.144 32.000 0.00 0.00 38.11 4.34
2971 3401 8.314021 GGGTGATACTTTTGATTTTTCTCCATT 58.686 33.333 0.00 0.00 0.00 3.16
2972 3402 7.093333 GGGGTGATACTTTTGATTTTTCTCCAT 60.093 37.037 0.00 0.00 0.00 3.41
2973 3403 6.210584 GGGGTGATACTTTTGATTTTTCTCCA 59.789 38.462 0.00 0.00 0.00 3.86
2974 3404 6.625081 CGGGGTGATACTTTTGATTTTTCTCC 60.625 42.308 0.00 0.00 0.00 3.71
2975 3405 6.072119 ACGGGGTGATACTTTTGATTTTTCTC 60.072 38.462 0.00 0.00 0.00 2.87
2976 3406 5.773176 ACGGGGTGATACTTTTGATTTTTCT 59.227 36.000 0.00 0.00 0.00 2.52
2977 3407 6.020971 ACGGGGTGATACTTTTGATTTTTC 57.979 37.500 0.00 0.00 0.00 2.29
2978 3408 5.335348 CGACGGGGTGATACTTTTGATTTTT 60.335 40.000 0.00 0.00 0.00 1.94
2979 3409 4.155280 CGACGGGGTGATACTTTTGATTTT 59.845 41.667 0.00 0.00 0.00 1.82
2980 3410 3.687698 CGACGGGGTGATACTTTTGATTT 59.312 43.478 0.00 0.00 0.00 2.17
2981 3411 3.267483 CGACGGGGTGATACTTTTGATT 58.733 45.455 0.00 0.00 0.00 2.57
2982 3412 2.419574 CCGACGGGGTGATACTTTTGAT 60.420 50.000 5.81 0.00 0.00 2.57
2983 3413 1.066716 CCGACGGGGTGATACTTTTGA 60.067 52.381 5.81 0.00 0.00 2.69
2984 3414 1.365699 CCGACGGGGTGATACTTTTG 58.634 55.000 5.81 0.00 0.00 2.44
2985 3415 0.392060 GCCGACGGGGTGATACTTTT 60.392 55.000 17.22 0.00 38.44 2.27
2986 3416 1.219935 GCCGACGGGGTGATACTTT 59.780 57.895 17.22 0.00 38.44 2.66
2987 3417 2.728435 GGCCGACGGGGTGATACTT 61.728 63.158 17.22 0.00 38.44 2.24
2988 3418 3.152400 GGCCGACGGGGTGATACT 61.152 66.667 17.22 0.00 38.44 2.12
2989 3419 2.639883 GAAGGCCGACGGGGTGATAC 62.640 65.000 17.22 0.00 38.44 2.24
2990 3420 2.364579 AAGGCCGACGGGGTGATA 60.365 61.111 17.22 0.00 38.44 2.15
2991 3421 3.782443 GAAGGCCGACGGGGTGAT 61.782 66.667 17.22 0.00 38.44 3.06
2993 3423 4.760047 CAGAAGGCCGACGGGGTG 62.760 72.222 17.22 0.00 38.44 4.61
2995 3425 4.016706 AACAGAAGGCCGACGGGG 62.017 66.667 17.22 0.00 39.58 5.73
2996 3426 2.742372 CAACAGAAGGCCGACGGG 60.742 66.667 17.22 0.00 0.00 5.28
2997 3427 2.725203 TTCCAACAGAAGGCCGACGG 62.725 60.000 10.29 10.29 0.00 4.79
2998 3428 0.882927 TTTCCAACAGAAGGCCGACG 60.883 55.000 0.00 0.00 35.40 5.12
2999 3429 0.591659 GTTTCCAACAGAAGGCCGAC 59.408 55.000 0.00 0.00 35.40 4.79
3000 3430 0.882927 CGTTTCCAACAGAAGGCCGA 60.883 55.000 0.00 0.00 35.40 5.54
3001 3431 1.574428 CGTTTCCAACAGAAGGCCG 59.426 57.895 0.00 0.00 35.40 6.13
3002 3432 1.524008 CCCGTTTCCAACAGAAGGCC 61.524 60.000 0.00 0.00 35.40 5.19
3003 3433 0.536460 TCCCGTTTCCAACAGAAGGC 60.536 55.000 0.00 0.00 35.40 4.35
3004 3434 1.202770 AGTCCCGTTTCCAACAGAAGG 60.203 52.381 0.00 0.00 35.40 3.46
3005 3435 2.256117 AGTCCCGTTTCCAACAGAAG 57.744 50.000 0.00 0.00 35.40 2.85
3006 3436 2.721425 AAGTCCCGTTTCCAACAGAA 57.279 45.000 0.00 0.00 0.00 3.02
3007 3437 2.721425 AAAGTCCCGTTTCCAACAGA 57.279 45.000 0.00 0.00 0.00 3.41
3008 3438 2.286772 CGAAAAGTCCCGTTTCCAACAG 60.287 50.000 0.00 0.00 32.40 3.16
3009 3439 1.671845 CGAAAAGTCCCGTTTCCAACA 59.328 47.619 0.00 0.00 32.40 3.33
3010 3440 1.002142 CCGAAAAGTCCCGTTTCCAAC 60.002 52.381 0.00 0.00 32.40 3.77
3011 3441 1.310904 CCGAAAAGTCCCGTTTCCAA 58.689 50.000 0.00 0.00 32.40 3.53
3012 3442 1.167781 GCCGAAAAGTCCCGTTTCCA 61.168 55.000 0.00 0.00 32.40 3.53
3013 3443 1.577922 GCCGAAAAGTCCCGTTTCC 59.422 57.895 0.00 0.00 32.40 3.13
3014 3444 1.167781 TGGCCGAAAAGTCCCGTTTC 61.168 55.000 0.00 0.00 0.00 2.78
3015 3445 0.752376 TTGGCCGAAAAGTCCCGTTT 60.752 50.000 0.00 0.00 0.00 3.60
3016 3446 1.152922 TTGGCCGAAAAGTCCCGTT 60.153 52.632 0.00 0.00 0.00 4.44
3017 3447 1.895231 GTTGGCCGAAAAGTCCCGT 60.895 57.895 0.00 0.00 0.00 5.28
3018 3448 2.622962 GGTTGGCCGAAAAGTCCCG 61.623 63.158 0.00 0.00 0.00 5.14
3019 3449 3.362262 GGTTGGCCGAAAAGTCCC 58.638 61.111 0.00 0.00 0.00 4.46
3032 3462 0.461961 TCCTTTTTGGCCAACGGTTG 59.538 50.000 20.35 13.86 35.26 3.77
3033 3463 0.462375 GTCCTTTTTGGCCAACGGTT 59.538 50.000 20.35 0.00 35.26 4.44
3034 3464 0.396556 AGTCCTTTTTGGCCAACGGT 60.397 50.000 20.35 1.36 35.26 4.83
3035 3465 0.750249 AAGTCCTTTTTGGCCAACGG 59.250 50.000 20.35 18.61 35.26 4.44
3036 3466 2.595124 AAAGTCCTTTTTGGCCAACG 57.405 45.000 20.35 9.67 35.26 4.10
3037 3467 2.863740 CGAAAAGTCCTTTTTGGCCAAC 59.136 45.455 20.35 6.23 42.26 3.77
3038 3468 2.761208 TCGAAAAGTCCTTTTTGGCCAA 59.239 40.909 16.05 16.05 42.26 4.52
3039 3469 2.100087 GTCGAAAAGTCCTTTTTGGCCA 59.900 45.455 0.00 0.00 40.74 5.36
3040 3470 2.739292 GTCGAAAAGTCCTTTTTGGCC 58.261 47.619 16.13 0.00 40.74 5.36
3041 3471 2.100087 TGGTCGAAAAGTCCTTTTTGGC 59.900 45.455 16.13 14.88 43.99 4.52
3042 3472 4.359706 CTTGGTCGAAAAGTCCTTTTTGG 58.640 43.478 16.13 8.34 42.26 3.28
3043 3473 3.796717 GCTTGGTCGAAAAGTCCTTTTTG 59.203 43.478 11.84 11.84 42.26 2.44
3044 3474 3.699538 AGCTTGGTCGAAAAGTCCTTTTT 59.300 39.130 6.48 0.00 42.26 1.94
3045 3475 3.288092 AGCTTGGTCGAAAAGTCCTTTT 58.712 40.909 4.75 4.75 44.59 2.27
3046 3476 2.932261 AGCTTGGTCGAAAAGTCCTTT 58.068 42.857 10.01 0.00 0.00 3.11
3047 3477 2.640316 AGCTTGGTCGAAAAGTCCTT 57.360 45.000 10.01 0.00 0.00 3.36
3048 3478 2.618709 CAAAGCTTGGTCGAAAAGTCCT 59.381 45.455 0.00 0.00 0.00 3.85
3049 3479 2.287608 CCAAAGCTTGGTCGAAAAGTCC 60.288 50.000 0.00 0.00 45.93 3.85
3050 3480 3.000082 CCAAAGCTTGGTCGAAAAGTC 58.000 47.619 0.00 4.13 45.93 3.01
3059 3489 9.851874 AAAAGTACTTTTTGGCCAAAGCTTGGT 62.852 37.037 28.79 23.04 44.87 3.67
3060 3490 7.571786 AAAAGTACTTTTTGGCCAAAGCTTGG 61.572 38.462 28.79 19.39 45.36 3.61
3061 3491 4.058721 AGTACTTTTTGGCCAAAGCTTG 57.941 40.909 28.79 20.99 37.28 4.01
3062 3492 4.753516 AAGTACTTTTTGGCCAAAGCTT 57.246 36.364 28.79 22.87 37.28 3.74
3063 3493 4.753516 AAAGTACTTTTTGGCCAAAGCT 57.246 36.364 28.79 19.23 37.28 3.74
3064 3494 4.026062 CGAAAAGTACTTTTTGGCCAAAGC 60.026 41.667 29.54 17.58 42.26 3.51
3065 3495 5.635549 CGAAAAGTACTTTTTGGCCAAAG 57.364 39.130 29.54 21.49 42.26 2.77
3072 3502 4.425520 TGTTGGCCGAAAAGTACTTTTTG 58.574 39.130 29.97 29.97 42.26 2.44
3073 3503 4.158949 ACTGTTGGCCGAAAAGTACTTTTT 59.841 37.500 29.26 16.24 42.26 1.94
3074 3504 3.697542 ACTGTTGGCCGAAAAGTACTTTT 59.302 39.130 29.12 29.12 44.59 2.27
3075 3505 3.284617 ACTGTTGGCCGAAAAGTACTTT 58.715 40.909 15.22 15.22 0.00 2.66
3076 3506 2.927028 ACTGTTGGCCGAAAAGTACTT 58.073 42.857 1.12 1.12 0.00 2.24
3077 3507 2.616842 CAACTGTTGGCCGAAAAGTACT 59.383 45.455 12.66 0.00 0.00 2.73
3078 3508 2.287368 CCAACTGTTGGCCGAAAAGTAC 60.287 50.000 25.21 0.00 45.17 2.73
3079 3509 1.950909 CCAACTGTTGGCCGAAAAGTA 59.049 47.619 25.21 0.00 45.17 2.24
3080 3510 0.744281 CCAACTGTTGGCCGAAAAGT 59.256 50.000 25.21 0.00 45.17 2.66
3081 3511 3.568093 CCAACTGTTGGCCGAAAAG 57.432 52.632 25.21 0.00 45.17 2.27
3090 3520 1.338020 GGACTCTTTGGCCAACTGTTG 59.662 52.381 20.35 13.50 45.54 3.33
3091 3521 1.692411 GGACTCTTTGGCCAACTGTT 58.308 50.000 20.35 2.67 45.54 3.16
3092 3522 3.421567 GGACTCTTTGGCCAACTGT 57.578 52.632 20.35 16.85 45.54 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.