Multiple sequence alignment - TraesCS5A01G516400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G516400 chr5A 100.000 5893 0 0 1 5893 679753970 679759862 0.000000e+00 10883.0
1 TraesCS5A01G516400 chr5A 97.423 194 5 0 5700 5893 705312301 705312494 1.220000e-86 331.0
2 TraesCS5A01G516400 chr5A 88.000 250 22 6 2463 2711 180350923 180351165 7.470000e-74 289.0
3 TraesCS5A01G516400 chr4D 95.755 2450 75 12 1857 4287 498958047 498960486 0.000000e+00 3921.0
4 TraesCS5A01G516400 chr4D 90.449 890 41 15 4275 5128 498960530 498961411 0.000000e+00 1133.0
5 TraesCS5A01G516400 chr4D 81.723 1056 87 57 860 1857 498956913 498957920 0.000000e+00 784.0
6 TraesCS5A01G516400 chr4D 78.097 557 84 21 123 646 498955782 498956333 9.530000e-83 318.0
7 TraesCS5A01G516400 chr4D 88.000 100 11 1 5480 5579 499217882 499217980 3.730000e-22 117.0
8 TraesCS5A01G516400 chr4B 93.551 1411 58 23 2895 4290 641421560 641422952 0.000000e+00 2071.0
9 TraesCS5A01G516400 chr4B 86.730 1055 66 37 836 1851 641419391 641420410 0.000000e+00 1105.0
10 TraesCS5A01G516400 chr4B 86.187 1028 91 19 1857 2838 641420539 641421561 0.000000e+00 1064.0
11 TraesCS5A01G516400 chr4B 88.889 891 55 16 4275 5128 641422992 641423875 0.000000e+00 1057.0
12 TraesCS5A01G516400 chr4B 79.266 545 85 17 125 642 641418193 641418736 7.260000e-94 355.0
13 TraesCS5A01G516400 chr4B 98.413 189 3 0 5705 5893 628600042 628600230 3.400000e-87 333.0
14 TraesCS5A01G516400 chr4B 95.745 188 8 0 5705 5892 37874126 37874313 2.670000e-78 303.0
15 TraesCS5A01G516400 chr4B 92.432 185 10 2 5480 5661 641423873 641424056 1.630000e-65 261.0
16 TraesCS5A01G516400 chr4B 92.000 50 4 0 640 689 182584480 182584431 2.950000e-08 71.3
17 TraesCS5A01G516400 chr6A 82.491 2433 255 81 1859 4188 581798083 581795719 0.000000e+00 1975.0
18 TraesCS5A01G516400 chr6A 93.036 359 22 1 5125 5480 16609876 16610234 6.770000e-144 521.0
19 TraesCS5A01G516400 chr6A 92.758 359 23 1 5125 5480 16606503 16606861 3.150000e-142 516.0
20 TraesCS5A01G516400 chr6A 93.130 262 18 0 5125 5386 16604229 16604490 9.260000e-103 385.0
21 TraesCS5A01G516400 chr6A 95.789 190 8 0 5704 5893 579407119 579407308 2.060000e-79 307.0
22 TraesCS5A01G516400 chr6A 85.714 98 7 5 5485 5576 581795096 581795000 4.860000e-16 97.1
23 TraesCS5A01G516400 chr6A 97.727 44 1 0 4974 5017 581795305 581795262 6.330000e-10 76.8
24 TraesCS5A01G516400 chr6B 82.369 2263 241 89 2017 4188 657286039 657283844 0.000000e+00 1823.0
25 TraesCS5A01G516400 chr6B 97.727 44 1 0 4974 5017 657283431 657283388 6.330000e-10 76.8
26 TraesCS5A01G516400 chr6B 93.750 48 3 0 642 689 576926246 576926199 8.190000e-09 73.1
27 TraesCS5A01G516400 chr6B 97.368 38 1 0 5485 5522 657283170 657283133 1.370000e-06 65.8
28 TraesCS5A01G516400 chr6D 83.503 1964 199 72 2298 4188 434462537 434460626 0.000000e+00 1716.0
29 TraesCS5A01G516400 chr6D 79.222 900 95 48 1858 2711 7893772 7892919 5.190000e-150 542.0
30 TraesCS5A01G516400 chr6D 78.579 901 98 49 1858 2711 142861783 142862635 1.890000e-139 507.0
31 TraesCS5A01G516400 chr6D 83.505 97 9 4 5486 5576 434460090 434459995 3.780000e-12 84.2
32 TraesCS5A01G516400 chr6D 91.667 48 4 0 642 689 38667502 38667455 3.810000e-07 67.6
33 TraesCS5A01G516400 chr6D 91.667 48 4 0 642 689 193131004 193130957 3.810000e-07 67.6
34 TraesCS5A01G516400 chr6D 91.489 47 1 1 4974 5017 434460210 434460164 1.770000e-05 62.1
35 TraesCS5A01G516400 chr1A 97.500 360 5 2 5128 5484 349353783 349354141 3.900000e-171 612.0
36 TraesCS5A01G516400 chr5B 97.493 359 6 1 5128 5483 594076679 594076321 1.400000e-170 610.0
37 TraesCS5A01G516400 chr5B 95.263 190 9 0 5704 5893 63626585 63626774 9.600000e-78 302.0
38 TraesCS5A01G516400 chrUn 79.111 900 96 46 1858 2711 94925583 94926436 2.420000e-148 536.0
39 TraesCS5A01G516400 chrUn 93.333 45 3 0 642 686 261272528 261272572 3.810000e-07 67.6
40 TraesCS5A01G516400 chrUn 93.333 45 3 0 642 686 278230566 278230610 3.810000e-07 67.6
41 TraesCS5A01G516400 chr3D 78.889 900 98 46 1858 2711 167408063 167408916 5.230000e-145 525.0
42 TraesCS5A01G516400 chr3A 92.697 356 23 1 5128 5480 1742003 1741648 1.460000e-140 510.0
43 TraesCS5A01G516400 chr2D 78.556 900 101 46 1858 2711 190425531 190426384 5.270000e-140 508.0
44 TraesCS5A01G516400 chr7A 79.524 630 61 27 1858 2463 259566453 259565868 2.580000e-103 387.0
45 TraesCS5A01G516400 chr3B 98.413 189 3 0 5705 5893 499766181 499765993 3.400000e-87 333.0
46 TraesCS5A01G516400 chr1B 96.842 190 6 0 5704 5893 446726077 446725888 9.530000e-83 318.0
47 TraesCS5A01G516400 chr1B 96.316 190 6 1 5704 5893 3200601 3200789 1.590000e-80 311.0
48 TraesCS5A01G516400 chr1B 79.375 160 24 7 5328 5481 30658241 30658397 2.900000e-18 104.0
49 TraesCS5A01G516400 chr1B 78.481 158 25 7 5330 5481 30646829 30646983 1.750000e-15 95.3
50 TraesCS5A01G516400 chr1B 95.556 45 2 0 642 686 119950287 119950331 8.190000e-09 73.1
51 TraesCS5A01G516400 chr1B 93.617 47 3 0 640 686 642332833 642332879 2.950000e-08 71.3
52 TraesCS5A01G516400 chr4A 96.825 189 6 0 5705 5893 88468108 88467920 3.430000e-82 316.0
53 TraesCS5A01G516400 chr2A 90.286 175 11 4 2463 2636 704702037 704702206 2.140000e-54 224.0
54 TraesCS5A01G516400 chr2A 85.204 196 21 2 1857 2052 735489406 735489593 1.680000e-45 195.0
55 TraesCS5A01G516400 chr5D 84.762 105 8 6 5385 5484 287798084 287797983 1.350000e-16 99.0
56 TraesCS5A01G516400 chr5D 79.137 139 24 4 5348 5482 42705437 42705574 2.260000e-14 91.6
57 TraesCS5A01G516400 chr7B 92.000 50 4 0 640 689 38116776 38116727 2.950000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G516400 chr5A 679753970 679759862 5892 False 10883.000000 10883 100.000000 1 5893 1 chr5A.!!$F2 5892
1 TraesCS5A01G516400 chr4D 498955782 498961411 5629 False 1539.000000 3921 86.506000 123 5128 4 chr4D.!!$F2 5005
2 TraesCS5A01G516400 chr4B 641418193 641424056 5863 False 985.500000 2071 87.842500 125 5661 6 chr4B.!!$F3 5536
3 TraesCS5A01G516400 chr6A 581795000 581798083 3083 True 716.300000 1975 88.644000 1859 5576 3 chr6A.!!$R1 3717
4 TraesCS5A01G516400 chr6A 16604229 16610234 6005 False 474.000000 521 92.974667 5125 5480 3 chr6A.!!$F2 355
5 TraesCS5A01G516400 chr6B 657283133 657286039 2906 True 655.200000 1823 92.488000 2017 5522 3 chr6B.!!$R2 3505
6 TraesCS5A01G516400 chr6D 434459995 434462537 2542 True 620.766667 1716 86.165667 2298 5576 3 chr6D.!!$R4 3278
7 TraesCS5A01G516400 chr6D 7892919 7893772 853 True 542.000000 542 79.222000 1858 2711 1 chr6D.!!$R1 853
8 TraesCS5A01G516400 chr6D 142861783 142862635 852 False 507.000000 507 78.579000 1858 2711 1 chr6D.!!$F1 853
9 TraesCS5A01G516400 chrUn 94925583 94926436 853 False 536.000000 536 79.111000 1858 2711 1 chrUn.!!$F1 853
10 TraesCS5A01G516400 chr3D 167408063 167408916 853 False 525.000000 525 78.889000 1858 2711 1 chr3D.!!$F1 853
11 TraesCS5A01G516400 chr2D 190425531 190426384 853 False 508.000000 508 78.556000 1858 2711 1 chr2D.!!$F1 853
12 TraesCS5A01G516400 chr7A 259565868 259566453 585 True 387.000000 387 79.524000 1858 2463 1 chr7A.!!$R1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
426 449 0.035152 ATGAGGGCATTCAACGAGCA 60.035 50.0 0.00 0.00 0.00 4.26 F
636 670 0.165944 GCAATTGTCAACCCTCGACG 59.834 55.0 7.40 0.00 36.11 5.12 F
1057 1775 0.175989 GACAGCCACCAGGTAGTAGC 59.824 60.0 0.00 0.00 37.19 3.58 F
1184 1929 0.609131 CAGGGCTTGGGTGGTAGTTG 60.609 60.0 0.00 0.00 0.00 3.16 F
1348 2099 0.659957 GAATGGAGTGATCTTGCGCC 59.340 55.0 4.18 0.00 0.00 6.53 F
2734 3758 0.908910 ATATGCCACTGGGACGTCAA 59.091 50.0 18.91 3.79 35.59 3.18 F
3541 4593 2.167693 TGGACCTTCTATGTGGTTAGCG 59.832 50.0 0.00 0.00 36.59 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1248 1995 0.616371 TGGCGTGCCTAAACCTGTAT 59.384 50.000 12.84 0.0 36.94 2.29 R
1704 2487 1.005340 GATCGCTCCTCTTTGCTGTG 58.995 55.000 0.00 0.0 0.00 3.66 R
2265 3245 1.756538 CACAAGCCCAACTCCTTGTTT 59.243 47.619 3.50 0.0 46.86 2.83 R
3004 4032 1.915614 GCATCACTGGTGCTGGTTCG 61.916 60.000 7.05 0.0 39.45 3.95 R
3288 4325 5.987953 AGTATACATGCACAACATAGCTCAG 59.012 40.000 5.50 0.0 36.64 3.35 R
3585 4637 1.134280 CCATGCCAAGAGTAGTCCCAG 60.134 57.143 0.00 0.0 0.00 4.45 R
5368 12377 0.184451 ATTTCAGGGCATCGGAGCAT 59.816 50.000 2.61 0.0 35.83 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.859745 CAAATGATACATCCGTCCACG 57.140 47.619 0.00 0.00 39.44 4.94
30 31 4.498520 CGTCCACGGCGATGCTCT 62.499 66.667 16.62 0.00 35.37 4.09
31 32 2.583593 GTCCACGGCGATGCTCTC 60.584 66.667 16.62 0.00 0.00 3.20
32 33 3.068064 TCCACGGCGATGCTCTCA 61.068 61.111 16.62 0.00 0.00 3.27
33 34 2.887568 CCACGGCGATGCTCTCAC 60.888 66.667 16.62 0.00 0.00 3.51
34 35 2.887568 CACGGCGATGCTCTCACC 60.888 66.667 16.62 0.00 0.00 4.02
37 38 4.148825 GGCGATGCTCTCACCGGT 62.149 66.667 0.00 0.00 27.45 5.28
38 39 2.887568 GCGATGCTCTCACCGGTG 60.888 66.667 29.26 29.26 27.45 4.94
39 40 2.887568 CGATGCTCTCACCGGTGC 60.888 66.667 30.25 18.66 0.00 5.01
40 41 2.265739 GATGCTCTCACCGGTGCA 59.734 61.111 30.25 23.94 39.47 4.57
41 42 2.046892 ATGCTCTCACCGGTGCAC 60.047 61.111 30.25 17.83 38.28 4.57
42 43 3.939837 ATGCTCTCACCGGTGCACG 62.940 63.158 30.25 19.24 38.28 5.34
70 71 4.261888 CGAGAGGTGTTGGAACCG 57.738 61.111 0.00 0.00 45.53 4.44
71 72 1.374252 CGAGAGGTGTTGGAACCGG 60.374 63.158 0.00 0.00 45.53 5.28
72 73 1.752833 GAGAGGTGTTGGAACCGGT 59.247 57.895 0.00 0.00 45.53 5.28
73 74 0.971386 GAGAGGTGTTGGAACCGGTA 59.029 55.000 8.00 0.00 45.53 4.02
74 75 0.974383 AGAGGTGTTGGAACCGGTAG 59.026 55.000 8.00 0.00 45.53 3.18
75 76 0.036671 GAGGTGTTGGAACCGGTAGG 60.037 60.000 8.00 0.00 45.53 3.18
76 77 1.002990 GGTGTTGGAACCGGTAGGG 60.003 63.158 8.00 0.00 43.47 3.53
77 78 1.002990 GTGTTGGAACCGGTAGGGG 60.003 63.158 8.00 0.00 43.47 4.79
78 79 2.225596 TGTTGGAACCGGTAGGGGG 61.226 63.158 8.00 0.00 43.47 5.40
79 80 1.919816 GTTGGAACCGGTAGGGGGA 60.920 63.158 8.00 0.00 43.47 4.81
80 81 1.083329 TTGGAACCGGTAGGGGGAT 59.917 57.895 8.00 0.00 43.47 3.85
81 82 0.550638 TTGGAACCGGTAGGGGGATT 60.551 55.000 8.00 0.00 43.47 3.01
82 83 1.276140 TGGAACCGGTAGGGGGATTG 61.276 60.000 8.00 0.00 43.47 2.67
83 84 1.153025 GAACCGGTAGGGGGATTGC 60.153 63.158 8.00 0.00 43.47 3.56
84 85 1.618447 AACCGGTAGGGGGATTGCT 60.618 57.895 8.00 0.00 43.47 3.91
85 86 1.921869 AACCGGTAGGGGGATTGCTG 61.922 60.000 8.00 0.00 43.47 4.41
86 87 2.510906 CGGTAGGGGGATTGCTGG 59.489 66.667 0.00 0.00 0.00 4.85
87 88 2.070039 CGGTAGGGGGATTGCTGGA 61.070 63.158 0.00 0.00 0.00 3.86
88 89 1.632018 CGGTAGGGGGATTGCTGGAA 61.632 60.000 0.00 0.00 0.00 3.53
89 90 0.106669 GGTAGGGGGATTGCTGGAAC 60.107 60.000 0.00 0.00 0.00 3.62
90 91 0.106669 GTAGGGGGATTGCTGGAACC 60.107 60.000 0.00 0.00 0.00 3.62
91 92 1.632018 TAGGGGGATTGCTGGAACCG 61.632 60.000 0.00 0.00 0.00 4.44
92 93 3.140814 GGGGATTGCTGGAACCGC 61.141 66.667 0.00 0.00 0.00 5.68
93 94 2.361104 GGGATTGCTGGAACCGCA 60.361 61.111 6.35 6.35 35.22 5.69
94 95 2.409870 GGGATTGCTGGAACCGCAG 61.410 63.158 9.35 0.00 38.80 5.18
95 96 1.675641 GGATTGCTGGAACCGCAGT 60.676 57.895 9.35 7.56 38.80 4.40
96 97 1.648467 GGATTGCTGGAACCGCAGTC 61.648 60.000 17.18 17.18 41.61 3.51
97 98 1.648467 GATTGCTGGAACCGCAGTCC 61.648 60.000 15.75 0.00 37.93 3.85
98 99 3.842925 TTGCTGGAACCGCAGTCCC 62.843 63.158 9.35 0.00 38.80 4.46
100 101 4.760047 CTGGAACCGCAGTCCCCG 62.760 72.222 0.00 0.00 0.00 5.73
102 103 4.011517 GGAACCGCAGTCCCCGAA 62.012 66.667 0.00 0.00 0.00 4.30
103 104 2.267961 GAACCGCAGTCCCCGAAT 59.732 61.111 0.00 0.00 0.00 3.34
104 105 2.046314 AACCGCAGTCCCCGAATG 60.046 61.111 0.00 0.00 0.00 2.67
109 110 4.857251 CAGTCCCCGAATGCTACC 57.143 61.111 0.00 0.00 0.00 3.18
110 111 1.904771 CAGTCCCCGAATGCTACCA 59.095 57.895 0.00 0.00 0.00 3.25
111 112 0.469917 CAGTCCCCGAATGCTACCAT 59.530 55.000 0.00 0.00 0.00 3.55
112 113 0.469917 AGTCCCCGAATGCTACCATG 59.530 55.000 0.00 0.00 0.00 3.66
113 114 0.468226 GTCCCCGAATGCTACCATGA 59.532 55.000 0.00 0.00 0.00 3.07
114 115 0.468226 TCCCCGAATGCTACCATGAC 59.532 55.000 0.00 0.00 0.00 3.06
115 116 0.180171 CCCCGAATGCTACCATGACA 59.820 55.000 0.00 0.00 0.00 3.58
116 117 1.408127 CCCCGAATGCTACCATGACAA 60.408 52.381 0.00 0.00 0.00 3.18
117 118 2.364632 CCCGAATGCTACCATGACAAA 58.635 47.619 0.00 0.00 0.00 2.83
118 119 2.097466 CCCGAATGCTACCATGACAAAC 59.903 50.000 0.00 0.00 0.00 2.93
119 120 3.009723 CCGAATGCTACCATGACAAACT 58.990 45.455 0.00 0.00 0.00 2.66
120 121 3.063997 CCGAATGCTACCATGACAAACTC 59.936 47.826 0.00 0.00 0.00 3.01
121 122 3.935203 CGAATGCTACCATGACAAACTCT 59.065 43.478 0.00 0.00 0.00 3.24
126 127 3.616560 GCTACCATGACAAACTCTCGGAA 60.617 47.826 0.00 0.00 0.00 4.30
137 138 0.106335 CTCTCGGAAGCTGCATCCAT 59.894 55.000 22.20 0.00 36.74 3.41
139 140 1.153107 TCGGAAGCTGCATCCATGG 60.153 57.895 22.20 4.97 36.74 3.66
144 145 3.534056 GCTGCATCCATGGCCACC 61.534 66.667 8.16 0.00 0.00 4.61
153 154 1.448893 CATGGCCACCAAATGCTGC 60.449 57.895 8.16 0.00 36.95 5.25
156 157 1.297364 GGCCACCAAATGCTGCAAT 59.703 52.632 6.36 0.00 0.00 3.56
157 158 0.321830 GGCCACCAAATGCTGCAATT 60.322 50.000 6.36 0.47 0.00 2.32
158 159 0.800012 GCCACCAAATGCTGCAATTG 59.200 50.000 20.65 20.65 0.00 2.32
161 162 0.671163 ACCAAATGCTGCAATTGGCG 60.671 50.000 36.88 21.71 45.35 5.69
162 163 3.309841 ACCAAATGCTGCAATTGGCGT 62.310 47.619 36.88 22.82 45.35 5.68
207 211 0.037697 TTACAGCTGCAACCGTCGAT 60.038 50.000 15.27 0.00 0.00 3.59
214 218 0.108377 TGCAACCGTCGATGTGCTAT 60.108 50.000 17.89 0.00 0.00 2.97
223 227 1.412710 TCGATGTGCTATGAAGGGGTC 59.587 52.381 0.00 0.00 0.00 4.46
232 236 0.840722 ATGAAGGGGTCCAAGACGGT 60.841 55.000 0.00 0.00 35.57 4.83
269 273 0.748450 CCGGGAATGCTTGCAATCAT 59.252 50.000 9.94 9.94 0.00 2.45
285 289 0.970427 TCATGACGCTGGAGGCACTA 60.970 55.000 0.00 0.00 41.55 2.74
291 295 0.747255 CGCTGGAGGCACTACTATGT 59.253 55.000 0.00 0.00 42.22 2.29
294 298 2.555199 CTGGAGGCACTACTATGTTGC 58.445 52.381 0.00 0.00 42.22 4.17
295 299 1.134818 TGGAGGCACTACTATGTTGCG 60.135 52.381 0.00 0.00 42.22 4.85
297 301 0.537188 AGGCACTACTATGTTGCGCT 59.463 50.000 9.73 0.00 36.02 5.92
306 310 2.742053 ACTATGTTGCGCTACCAACTTG 59.258 45.455 19.09 6.31 44.12 3.16
327 331 1.491127 GGCGCGACAAATTTTTGCC 59.509 52.632 12.10 0.00 41.79 4.52
328 332 1.127620 GCGCGACAAATTTTTGCCG 59.872 52.632 12.10 7.28 44.97 5.69
340 344 5.638596 AATTTTTGCCGGAGTTTAGGTAG 57.361 39.130 5.05 0.00 0.00 3.18
341 345 2.773993 TTTGCCGGAGTTTAGGTAGG 57.226 50.000 5.05 0.00 0.00 3.18
346 350 1.811860 GGAGTTTAGGTAGGCGCGA 59.188 57.895 12.10 0.00 0.00 5.87
348 353 0.171903 GAGTTTAGGTAGGCGCGACA 59.828 55.000 17.71 0.00 0.00 4.35
353 358 1.744320 TAGGTAGGCGCGACATGCAT 61.744 55.000 17.71 3.36 46.97 3.96
355 360 1.882625 GTAGGCGCGACATGCATGA 60.883 57.895 32.75 4.93 46.97 3.07
367 373 3.881089 GACATGCATGAGATGAACATGGA 59.119 43.478 32.75 0.00 46.37 3.41
373 379 4.523173 GCATGAGATGAACATGGATGGAAT 59.477 41.667 0.00 0.00 43.39 3.01
380 386 8.543293 AGATGAACATGGATGGAATAAAACAT 57.457 30.769 0.00 0.00 0.00 2.71
385 391 9.603921 GAACATGGATGGAATAAAACATCAAAT 57.396 29.630 0.00 0.00 44.01 2.32
387 393 8.760735 ACATGGATGGAATAAAACATCAAATGA 58.239 29.630 18.29 0.00 44.01 2.57
396 402 4.589216 AAACATCAAATGAGGGTGTGTG 57.411 40.909 0.00 0.00 0.00 3.82
397 403 3.507162 ACATCAAATGAGGGTGTGTGA 57.493 42.857 0.00 0.00 0.00 3.58
399 405 1.877637 TCAAATGAGGGTGTGTGACG 58.122 50.000 0.00 0.00 0.00 4.35
400 406 0.874390 CAAATGAGGGTGTGTGACGG 59.126 55.000 0.00 0.00 0.00 4.79
402 408 0.472471 AATGAGGGTGTGTGACGGTT 59.528 50.000 0.00 0.00 0.00 4.44
404 410 0.390124 TGAGGGTGTGTGACGGTTAC 59.610 55.000 0.00 0.00 0.00 2.50
406 412 1.665599 GGGTGTGTGACGGTTACGG 60.666 63.158 0.00 0.00 46.48 4.02
407 413 1.363443 GGTGTGTGACGGTTACGGA 59.637 57.895 0.00 0.00 46.48 4.69
408 414 0.037975 GGTGTGTGACGGTTACGGAT 60.038 55.000 0.00 0.00 46.48 4.18
417 440 0.179056 CGGTTACGGATGAGGGCATT 60.179 55.000 0.00 0.00 34.11 3.56
426 449 0.035152 ATGAGGGCATTCAACGAGCA 60.035 50.000 0.00 0.00 0.00 4.26
428 451 0.674895 GAGGGCATTCAACGAGCAGT 60.675 55.000 0.00 0.00 0.00 4.40
431 454 0.874390 GGCATTCAACGAGCAGTGAA 59.126 50.000 0.00 0.00 0.00 3.18
438 461 2.805353 CGAGCAGTGAACGACCGG 60.805 66.667 0.00 0.00 0.00 5.28
439 462 2.432628 GAGCAGTGAACGACCGGG 60.433 66.667 6.32 0.00 0.00 5.73
444 467 2.433664 GTGAACGACCGGGCGAAT 60.434 61.111 41.17 25.77 34.83 3.34
456 479 2.904866 GCGAATATTGGGCGGGCA 60.905 61.111 3.27 0.00 0.00 5.36
489 512 1.273327 GCAGTGCCCTTTAGCAATTGT 59.727 47.619 2.85 0.00 46.19 2.71
497 520 5.011943 TGCCCTTTAGCAATTGTGAAGAAAT 59.988 36.000 7.40 0.00 40.56 2.17
499 522 7.096551 GCCCTTTAGCAATTGTGAAGAAATAA 58.903 34.615 7.40 0.00 0.00 1.40
500 523 7.765819 GCCCTTTAGCAATTGTGAAGAAATAAT 59.234 33.333 7.40 0.00 0.00 1.28
560 587 5.943416 TGACCGATCAAACCAGAACATTATT 59.057 36.000 0.00 0.00 0.00 1.40
565 592 6.912591 CGATCAAACCAGAACATTATTAAGCC 59.087 38.462 0.00 0.00 0.00 4.35
569 596 6.759497 AACCAGAACATTATTAAGCCTGTC 57.241 37.500 0.00 0.00 0.00 3.51
571 598 5.648092 ACCAGAACATTATTAAGCCTGTCAC 59.352 40.000 0.00 0.00 0.00 3.67
572 599 5.647658 CCAGAACATTATTAAGCCTGTCACA 59.352 40.000 0.00 0.00 0.00 3.58
584 611 1.802960 CCTGTCACACAAGACATGAGC 59.197 52.381 0.00 0.00 46.51 4.26
587 616 3.653344 TGTCACACAAGACATGAGCTAC 58.347 45.455 0.00 0.00 43.18 3.58
588 617 3.321968 TGTCACACAAGACATGAGCTACT 59.678 43.478 0.00 0.00 43.18 2.57
589 618 4.202253 TGTCACACAAGACATGAGCTACTT 60.202 41.667 0.00 0.00 43.18 2.24
590 619 4.151335 GTCACACAAGACATGAGCTACTTG 59.849 45.833 0.00 9.27 43.30 3.16
592 621 5.010617 TCACACAAGACATGAGCTACTTGTA 59.989 40.000 16.37 5.43 46.94 2.41
593 622 5.119279 CACACAAGACATGAGCTACTTGTAC 59.881 44.000 16.37 0.00 46.94 2.90
594 623 4.627467 CACAAGACATGAGCTACTTGTACC 59.373 45.833 16.37 4.04 46.94 3.34
595 624 4.528596 ACAAGACATGAGCTACTTGTACCT 59.471 41.667 15.70 5.10 46.84 3.08
597 626 5.331876 AGACATGAGCTACTTGTACCTTC 57.668 43.478 0.00 0.00 37.08 3.46
598 627 4.106197 GACATGAGCTACTTGTACCTTCG 58.894 47.826 0.00 0.00 37.08 3.79
599 628 3.119101 ACATGAGCTACTTGTACCTTCGG 60.119 47.826 0.00 0.00 35.57 4.30
636 670 0.165944 GCAATTGTCAACCCTCGACG 59.834 55.000 7.40 0.00 36.11 5.12
642 676 2.950433 TGTCAACCCTCGACGTTATTC 58.050 47.619 0.00 0.00 36.11 1.75
644 678 3.177487 GTCAACCCTCGACGTTATTCTC 58.823 50.000 0.00 0.00 0.00 2.87
645 679 2.159476 TCAACCCTCGACGTTATTCTCG 60.159 50.000 0.00 0.00 0.00 4.04
647 681 2.632377 ACCCTCGACGTTATTCTCGTA 58.368 47.619 0.00 0.00 41.64 3.43
648 682 2.352960 ACCCTCGACGTTATTCTCGTAC 59.647 50.000 0.00 0.00 41.64 3.67
649 683 2.611292 CCCTCGACGTTATTCTCGTACT 59.389 50.000 0.00 0.00 41.64 2.73
650 684 3.064545 CCCTCGACGTTATTCTCGTACTT 59.935 47.826 0.00 0.00 41.64 2.24
652 686 4.727655 CCTCGACGTTATTCTCGTACTTTC 59.272 45.833 0.00 0.00 41.64 2.62
653 687 5.447010 CCTCGACGTTATTCTCGTACTTTCT 60.447 44.000 0.00 0.00 41.64 2.52
654 688 5.554636 TCGACGTTATTCTCGTACTTTCTC 58.445 41.667 0.00 0.00 41.64 2.87
655 689 4.727655 CGACGTTATTCTCGTACTTTCTCC 59.272 45.833 0.00 0.00 41.64 3.71
656 690 4.656041 ACGTTATTCTCGTACTTTCTCCG 58.344 43.478 0.00 0.00 39.78 4.63
657 691 4.154918 ACGTTATTCTCGTACTTTCTCCGT 59.845 41.667 0.00 0.00 39.78 4.69
658 692 4.727655 CGTTATTCTCGTACTTTCTCCGTC 59.272 45.833 0.00 0.00 0.00 4.79
659 693 3.779271 ATTCTCGTACTTTCTCCGTCC 57.221 47.619 0.00 0.00 0.00 4.79
660 694 2.189594 TCTCGTACTTTCTCCGTCCA 57.810 50.000 0.00 0.00 0.00 4.02
661 695 2.507484 TCTCGTACTTTCTCCGTCCAA 58.493 47.619 0.00 0.00 0.00 3.53
662 696 2.886523 TCTCGTACTTTCTCCGTCCAAA 59.113 45.455 0.00 0.00 0.00 3.28
663 697 3.318839 TCTCGTACTTTCTCCGTCCAAAA 59.681 43.478 0.00 0.00 0.00 2.44
664 698 4.053295 CTCGTACTTTCTCCGTCCAAAAA 58.947 43.478 0.00 0.00 0.00 1.94
665 699 4.634199 TCGTACTTTCTCCGTCCAAAAAT 58.366 39.130 0.00 0.00 0.00 1.82
666 700 5.782047 TCGTACTTTCTCCGTCCAAAAATA 58.218 37.500 0.00 0.00 0.00 1.40
667 701 5.634859 TCGTACTTTCTCCGTCCAAAAATAC 59.365 40.000 0.00 0.00 0.00 1.89
668 702 5.636543 CGTACTTTCTCCGTCCAAAAATACT 59.363 40.000 0.00 0.00 0.00 2.12
669 703 6.146673 CGTACTTTCTCCGTCCAAAAATACTT 59.853 38.462 0.00 0.00 0.00 2.24
670 704 6.313744 ACTTTCTCCGTCCAAAAATACTTG 57.686 37.500 0.00 0.00 0.00 3.16
671 705 5.826208 ACTTTCTCCGTCCAAAAATACTTGT 59.174 36.000 0.00 0.00 0.00 3.16
672 706 5.934935 TTCTCCGTCCAAAAATACTTGTC 57.065 39.130 0.00 0.00 0.00 3.18
673 707 4.963373 TCTCCGTCCAAAAATACTTGTCA 58.037 39.130 0.00 0.00 0.00 3.58
674 708 5.556915 TCTCCGTCCAAAAATACTTGTCAT 58.443 37.500 0.00 0.00 0.00 3.06
675 709 6.001460 TCTCCGTCCAAAAATACTTGTCATT 58.999 36.000 0.00 0.00 0.00 2.57
676 710 6.007936 TCCGTCCAAAAATACTTGTCATTG 57.992 37.500 0.00 0.00 0.00 2.82
677 711 5.765677 TCCGTCCAAAAATACTTGTCATTGA 59.234 36.000 0.00 0.00 0.00 2.57
678 712 6.263392 TCCGTCCAAAAATACTTGTCATTGAA 59.737 34.615 0.00 0.00 0.00 2.69
679 713 6.920758 CCGTCCAAAAATACTTGTCATTGAAA 59.079 34.615 0.00 0.00 0.00 2.69
680 714 7.598493 CCGTCCAAAAATACTTGTCATTGAAAT 59.402 33.333 0.00 0.00 0.00 2.17
681 715 8.427012 CGTCCAAAAATACTTGTCATTGAAATG 58.573 33.333 0.00 0.00 37.75 2.32
682 716 8.711457 GTCCAAAAATACTTGTCATTGAAATGG 58.289 33.333 3.31 0.00 37.03 3.16
683 717 8.646004 TCCAAAAATACTTGTCATTGAAATGGA 58.354 29.630 3.31 0.00 37.03 3.41
684 718 9.439500 CCAAAAATACTTGTCATTGAAATGGAT 57.561 29.630 3.31 0.00 37.03 3.41
686 720 9.439500 AAAAATACTTGTCATTGAAATGGATGG 57.561 29.630 3.31 0.00 37.03 3.51
698 732 5.364778 TGAAATGGATGGATATCGTTCGTT 58.635 37.500 0.00 0.00 33.98 3.85
728 763 2.193536 AGCCAAGGTGCGACAAACC 61.194 57.895 0.00 0.00 38.03 3.27
729 764 2.485795 GCCAAGGTGCGACAAACCA 61.486 57.895 0.00 0.00 40.40 3.67
736 771 1.810441 TGCGACAAACCAACGACGT 60.810 52.632 0.00 0.00 0.00 4.34
745 780 2.074547 ACCAACGACGTAACCAGATG 57.925 50.000 0.00 0.00 0.00 2.90
764 799 1.582968 CCACAAGCAGCGCTGAAAT 59.417 52.632 40.21 21.95 39.62 2.17
765 800 0.731514 CCACAAGCAGCGCTGAAATG 60.732 55.000 40.21 31.78 39.62 2.32
767 802 0.890542 ACAAGCAGCGCTGAAATGGA 60.891 50.000 40.21 0.00 39.62 3.41
768 803 0.455633 CAAGCAGCGCTGAAATGGAC 60.456 55.000 40.21 20.37 39.62 4.02
769 804 0.607489 AAGCAGCGCTGAAATGGACT 60.607 50.000 40.21 22.34 39.62 3.85
770 805 0.250234 AGCAGCGCTGAAATGGACTA 59.750 50.000 40.21 0.00 37.57 2.59
771 806 0.375106 GCAGCGCTGAAATGGACTAC 59.625 55.000 40.21 14.87 0.00 2.73
773 808 2.738643 GCAGCGCTGAAATGGACTACTA 60.739 50.000 40.21 0.00 0.00 1.82
774 809 3.521560 CAGCGCTGAAATGGACTACTAA 58.478 45.455 33.66 0.00 0.00 2.24
778 813 4.392138 GCGCTGAAATGGACTACTAAAAGT 59.608 41.667 0.00 0.00 0.00 2.66
805 968 9.534565 AAAAGAATTTCTAGAGGCAAAAGAAAC 57.465 29.630 0.00 1.24 40.85 2.78
809 972 4.602340 TCTAGAGGCAAAAGAAACGTCT 57.398 40.909 0.00 0.00 34.72 4.18
814 977 1.660333 GGCAAAAGAAACGTCTCAGCG 60.660 52.381 0.00 0.00 30.70 5.18
835 1258 4.329256 GCGTACTAGTCAAAACCAGATTCC 59.671 45.833 0.00 0.00 0.00 3.01
839 1262 5.238583 ACTAGTCAAAACCAGATTCCTTCG 58.761 41.667 0.00 0.00 0.00 3.79
845 1268 1.258445 ACCAGATTCCTTCGTCGGCT 61.258 55.000 0.00 0.00 0.00 5.52
849 1548 2.094417 CAGATTCCTTCGTCGGCTTTTC 59.906 50.000 0.00 0.00 0.00 2.29
898 1613 1.208165 TTTTCCCCTCCCTCTCTGCC 61.208 60.000 0.00 0.00 0.00 4.85
907 1622 1.556911 TCCCTCTCTGCCTTCATTGTC 59.443 52.381 0.00 0.00 0.00 3.18
934 1649 1.667830 CCGCGAGCTTCCAGAAACA 60.668 57.895 8.23 0.00 0.00 2.83
958 1673 0.475048 ACGGAAAGGGGAAGGAGGAA 60.475 55.000 0.00 0.00 0.00 3.36
976 1694 2.083002 GAAGAGGAAGCAAAGCTCTGG 58.917 52.381 0.00 0.00 38.25 3.86
977 1695 1.356124 AGAGGAAGCAAAGCTCTGGA 58.644 50.000 0.00 0.00 38.25 3.86
978 1696 1.914798 AGAGGAAGCAAAGCTCTGGAT 59.085 47.619 0.00 0.00 38.25 3.41
979 1697 2.093021 AGAGGAAGCAAAGCTCTGGATC 60.093 50.000 0.00 0.00 38.25 3.36
1039 1757 2.285368 ACATTGAGCCCGGGGAGA 60.285 61.111 25.28 0.00 0.00 3.71
1042 1760 2.370445 ATTGAGCCCGGGGAGACAG 61.370 63.158 25.28 0.00 0.00 3.51
1049 1767 4.087892 CGGGGAGACAGCCACCAG 62.088 72.222 0.00 0.00 0.00 4.00
1051 1769 2.930562 GGGAGACAGCCACCAGGT 60.931 66.667 0.00 0.00 37.19 4.00
1052 1770 1.612442 GGGAGACAGCCACCAGGTA 60.612 63.158 0.00 0.00 37.19 3.08
1053 1771 1.617947 GGGAGACAGCCACCAGGTAG 61.618 65.000 0.00 0.00 37.19 3.18
1054 1772 0.905337 GGAGACAGCCACCAGGTAGT 60.905 60.000 0.00 0.00 37.19 2.73
1055 1773 1.618888 GGAGACAGCCACCAGGTAGTA 60.619 57.143 0.00 0.00 37.19 1.82
1056 1774 1.751924 GAGACAGCCACCAGGTAGTAG 59.248 57.143 0.00 0.00 37.19 2.57
1057 1775 0.175989 GACAGCCACCAGGTAGTAGC 59.824 60.000 0.00 0.00 37.19 3.58
1154 1890 2.125673 CGGCGGATGGTTCGTCTT 60.126 61.111 0.00 0.00 0.00 3.01
1184 1929 0.609131 CAGGGCTTGGGTGGTAGTTG 60.609 60.000 0.00 0.00 0.00 3.16
1240 1987 8.097038 TGAATCTGTTATTCTCTTGCTGTTACT 58.903 33.333 0.00 0.00 0.00 2.24
1335 2086 2.042741 TAGGCGGACGGGAATGGA 60.043 61.111 0.00 0.00 0.00 3.41
1348 2099 0.659957 GAATGGAGTGATCTTGCGCC 59.340 55.000 4.18 0.00 0.00 6.53
1351 2102 2.467826 GGAGTGATCTTGCGCCTGC 61.468 63.158 4.18 0.00 43.20 4.85
1369 2120 1.142870 TGCTGCCCCGAGCTTTATTAT 59.857 47.619 0.00 0.00 44.23 1.28
1413 2167 4.022329 CCATCCACCTTTGTTACCAAGTTC 60.022 45.833 0.00 0.00 0.00 3.01
1469 2236 6.787085 AGTAGTACTGAGATTTTTGTGTGC 57.213 37.500 5.39 0.00 0.00 4.57
1476 2243 5.008415 ACTGAGATTTTTGTGTGCTTCTCTG 59.992 40.000 0.00 0.00 36.11 3.35
1588 2371 1.709147 GATCATTTCACGCTGCCGCT 61.709 55.000 0.00 0.00 38.22 5.52
1648 2431 4.441217 GCTACCTGTTACTACCAGCCTAAC 60.441 50.000 0.00 0.00 0.00 2.34
1675 2458 4.058124 TGCACCAGCTATGTTTCGATATC 58.942 43.478 0.00 0.00 42.74 1.63
1692 2475 2.369983 ATCACCCATGCATTCGGAAT 57.630 45.000 15.15 0.00 0.00 3.01
1704 2487 4.821805 TGCATTCGGAATTTAGGAGGAATC 59.178 41.667 0.00 0.00 0.00 2.52
1751 2534 9.582431 TTTTCAGATTCTTAGTACCTAACGATG 57.418 33.333 0.00 0.00 0.00 3.84
1754 2537 8.188799 TCAGATTCTTAGTACCTAACGATGTTG 58.811 37.037 0.00 0.00 0.00 3.33
1756 2539 5.648178 TCTTAGTACCTAACGATGTTGCA 57.352 39.130 0.00 0.00 0.00 4.08
1768 2551 2.595536 CGATGTTGCACTTGCTTTATGC 59.404 45.455 2.33 0.00 42.66 3.14
1798 2581 1.066573 CCTCATTCTCGGCTGTCTGTT 60.067 52.381 0.00 0.00 0.00 3.16
1951 2883 2.846532 CTTGGGTTCCCTGTGGCT 59.153 61.111 9.43 0.00 0.00 4.75
1952 2884 1.153756 CTTGGGTTCCCTGTGGCTT 59.846 57.895 9.43 0.00 0.00 4.35
1960 2897 1.367346 TCCCTGTGGCTTGGTATCAA 58.633 50.000 0.00 0.00 0.00 2.57
2043 3004 3.970640 AGATCTCCATTCCTACTTGGACC 59.029 47.826 0.00 0.00 46.14 4.46
2252 3232 6.200475 GTGTAAATAAGCTCTCACGGATTACC 59.800 42.308 0.00 0.00 0.00 2.85
2253 3233 5.353394 AAATAAGCTCTCACGGATTACCA 57.647 39.130 0.00 0.00 35.59 3.25
2265 3245 7.666388 TCTCACGGATTACCATTTTAAGGAAAA 59.334 33.333 0.00 0.00 38.87 2.29
2434 3421 1.300620 CTGGTGAGACGGTCGCAAA 60.301 57.895 16.13 7.17 37.42 3.68
2436 3423 2.654912 GGTGAGACGGTCGCAAACG 61.655 63.158 16.13 0.00 37.42 3.60
2734 3758 0.908910 ATATGCCACTGGGACGTCAA 59.091 50.000 18.91 3.79 35.59 3.18
2868 3892 4.625742 TGCGATCTTTTGCTTAGTCAGTAC 59.374 41.667 0.00 0.00 33.01 2.73
2874 3898 4.948341 TTTGCTTAGTCAGTACTGGTCA 57.052 40.909 22.48 8.80 36.36 4.02
2930 3957 8.424274 TCAGGTAGCATGCATATATAATTTCG 57.576 34.615 21.98 0.00 0.00 3.46
3090 4126 4.793071 TGTTTCCTTTTGTCACATATGCG 58.207 39.130 1.58 0.00 0.00 4.73
3138 4174 6.826741 GGTTCAGCTTGTAATGGTTAGGAATA 59.173 38.462 0.00 0.00 0.00 1.75
3152 4188 8.890410 TGGTTAGGAATAACTGTTAGACTAGT 57.110 34.615 6.40 0.00 0.00 2.57
3153 4189 9.979897 TGGTTAGGAATAACTGTTAGACTAGTA 57.020 33.333 6.40 0.00 0.00 1.82
3541 4593 2.167693 TGGACCTTCTATGTGGTTAGCG 59.832 50.000 0.00 0.00 36.59 4.26
3585 4637 5.509670 GCTGGGGTTTCTTGATTATTATGGC 60.510 44.000 0.00 0.00 0.00 4.40
3708 4766 6.541641 AGCTATGCCTTAATGTTCTTCTTCTG 59.458 38.462 0.00 0.00 0.00 3.02
3728 4788 7.713507 TCTTCTGATCTGTTTCGTTCCTTTTTA 59.286 33.333 0.00 0.00 0.00 1.52
4040 5109 8.763601 ACTATTGAGGCCATCTAGGTTTATATC 58.236 37.037 5.01 0.00 40.61 1.63
4170 5261 6.447162 TGGTAGACAAGCGTCATAATCTATG 58.553 40.000 0.00 0.00 45.23 2.23
4188 5279 6.856135 TCTATGCATTTGTGCTCTTGATAG 57.144 37.500 3.54 0.00 35.49 2.08
4331 5483 7.554118 TGATTTCCAGAAGTCCATTAATCTGTC 59.446 37.037 1.05 0.00 38.06 3.51
4405 5576 5.415701 TGTTCTCTATGCCAAATCTGAAACC 59.584 40.000 0.00 0.00 0.00 3.27
4468 5641 6.233434 AGATAGAGAAGTTTGATTGCACACA 58.767 36.000 0.00 0.00 0.00 3.72
4469 5642 4.558538 AGAGAAGTTTGATTGCACACAC 57.441 40.909 0.00 0.00 0.00 3.82
4471 5644 4.641989 AGAGAAGTTTGATTGCACACACTT 59.358 37.500 8.19 8.19 41.45 3.16
4473 5646 5.343249 AGAAGTTTGATTGCACACACTTTC 58.657 37.500 9.45 6.14 39.72 2.62
4474 5647 4.989279 AGTTTGATTGCACACACTTTCT 57.011 36.364 0.00 0.00 28.18 2.52
4475 5648 5.329035 AGTTTGATTGCACACACTTTCTT 57.671 34.783 0.00 0.00 28.18 2.52
4476 5649 5.343249 AGTTTGATTGCACACACTTTCTTC 58.657 37.500 0.00 0.00 28.18 2.87
4480 5653 4.823442 TGATTGCACACACTTTCTTCATCT 59.177 37.500 0.00 0.00 0.00 2.90
4494 5667 8.587608 ACTTTCTTCATCTTGCATTTTGGATTA 58.412 29.630 0.00 0.00 0.00 1.75
4498 5671 6.704289 TCATCTTGCATTTTGGATTAGAGG 57.296 37.500 0.00 0.00 0.00 3.69
4502 5675 6.957631 TCTTGCATTTTGGATTAGAGGTAGA 58.042 36.000 0.00 0.00 0.00 2.59
4505 5678 4.822350 GCATTTTGGATTAGAGGTAGACCC 59.178 45.833 0.00 0.00 36.42 4.46
4540 5713 2.575279 ACTCAAGGTCAGCATCCAGATT 59.425 45.455 0.00 0.00 0.00 2.40
4551 5727 3.457380 AGCATCCAGATTCAAGGAGCTTA 59.543 43.478 12.16 0.00 35.99 3.09
4576 5752 2.833794 TGTAGGAGTTGTTGAGTGCAC 58.166 47.619 9.40 9.40 0.00 4.57
4577 5753 2.434336 TGTAGGAGTTGTTGAGTGCACT 59.566 45.455 21.88 21.88 0.00 4.40
4578 5754 2.246719 AGGAGTTGTTGAGTGCACTC 57.753 50.000 35.04 35.04 43.15 3.51
4658 5841 1.087771 GGCTAATACGCACGTTGGCT 61.088 55.000 0.00 0.00 0.00 4.75
4724 5907 6.569228 ACATACAACATAATCTCGTTCGTG 57.431 37.500 0.00 0.00 0.00 4.35
4734 5917 0.940519 CTCGTTCGTGGTTGCCGTTA 60.941 55.000 0.00 0.00 0.00 3.18
4801 5984 6.261826 AGCCACATAAAAAGCTCAGATGATAC 59.738 38.462 0.00 0.00 0.00 2.24
4802 5985 6.261826 GCCACATAAAAAGCTCAGATGATACT 59.738 38.462 0.00 0.00 0.00 2.12
5014 6230 6.015010 GTGGATGCACCTGTCTAACTAGATAT 60.015 42.308 5.98 0.00 39.86 1.63
5044 6400 8.404000 CCCAGCTAATATGGTTATACTACTACG 58.596 40.741 0.00 0.00 35.96 3.51
5085 6444 7.624549 AGTTATAATCACCAGAACATGTGACT 58.375 34.615 0.00 0.00 43.69 3.41
5144 6506 1.951209 TGAGGCCTTCCACTATGTGA 58.049 50.000 6.77 0.00 35.23 3.58
5145 6507 2.481441 TGAGGCCTTCCACTATGTGAT 58.519 47.619 6.77 0.00 35.23 3.06
5150 6512 3.144506 GCCTTCCACTATGTGATGGATG 58.855 50.000 0.00 0.00 44.49 3.51
5151 6513 3.434167 GCCTTCCACTATGTGATGGATGT 60.434 47.826 0.00 0.00 44.49 3.06
5213 12222 1.066858 TGAAAAACTTTTGGCACCGCA 60.067 42.857 0.00 0.00 0.00 5.69
5230 12239 0.391130 GCACTCACAGCGTGGGATAA 60.391 55.000 14.16 0.00 35.82 1.75
5239 12248 0.102300 GCGTGGGATAATTTGGCACC 59.898 55.000 0.00 0.00 0.00 5.01
5276 12285 6.184789 ACCCACATGTACTATAAACAAAGGG 58.815 40.000 0.00 2.51 39.87 3.95
5279 12288 7.067008 CCCACATGTACTATAAACAAAGGGAAG 59.933 40.741 0.00 0.00 37.95 3.46
5283 12292 8.519526 CATGTACTATAAACAAAGGGAAGCAAA 58.480 33.333 0.00 0.00 0.00 3.68
5319 12328 1.751351 CCAGCGTCTTCCTCTCATACA 59.249 52.381 0.00 0.00 0.00 2.29
5435 12447 0.596600 CATCGATGCCAAATGCCTGC 60.597 55.000 13.37 0.00 40.16 4.85
5438 12450 0.390078 CGATGCCAAATGCCTGCAAA 60.390 50.000 0.00 0.00 38.69 3.68
5536 12551 7.535258 GTGCATATATTTGCTTAGATGTTTCGG 59.465 37.037 17.40 0.00 43.18 4.30
5549 12564 1.339535 TGTTTCGGATGGCAGTGCATA 60.340 47.619 18.61 5.53 0.00 3.14
5565 12580 1.967762 CATACAGTTTTGCCACAGCG 58.032 50.000 0.00 0.00 44.31 5.18
5600 12618 4.815533 TCAAGATTCAGGAGGTCAGAAG 57.184 45.455 0.00 0.00 0.00 2.85
5606 12624 0.617249 CAGGAGGTCAGAAGCCCTCT 60.617 60.000 5.73 0.00 45.46 3.69
5626 12644 5.222007 CCTCTGAATATAAACCAGGGCAGAT 60.222 44.000 0.00 0.00 31.58 2.90
5630 12648 7.285401 TCTGAATATAAACCAGGGCAGATTTTC 59.715 37.037 0.00 0.00 0.00 2.29
5644 12662 6.875726 GGGCAGATTTTCTTTTTCAAGCTAAT 59.124 34.615 0.00 0.00 0.00 1.73
5650 12668 9.295214 GATTTTCTTTTTCAAGCTAATAGCCTC 57.705 33.333 8.88 0.00 43.77 4.70
5661 12679 0.107456 AATAGCCTCACCATCGCCAG 59.893 55.000 0.00 0.00 0.00 4.85
5662 12680 1.762522 ATAGCCTCACCATCGCCAGG 61.763 60.000 0.00 0.00 0.00 4.45
5663 12681 4.101448 GCCTCACCATCGCCAGGT 62.101 66.667 0.00 0.00 40.85 4.00
5668 12686 4.101448 ACCATCGCCAGGTGGAGC 62.101 66.667 4.64 0.00 38.13 4.70
5674 12692 4.459089 GCCAGGTGGAGCGACCTC 62.459 72.222 0.00 0.13 45.15 3.85
5690 12708 0.175989 CCTCCGTTAGGGTCTCTTGC 59.824 60.000 0.00 0.00 42.32 4.01
5691 12709 1.187087 CTCCGTTAGGGTCTCTTGCT 58.813 55.000 0.00 0.00 38.33 3.91
5692 12710 0.895530 TCCGTTAGGGTCTCTTGCTG 59.104 55.000 0.00 0.00 38.33 4.41
5693 12711 0.108138 CCGTTAGGGTCTCTTGCTGG 60.108 60.000 0.00 0.00 0.00 4.85
5694 12712 0.608640 CGTTAGGGTCTCTTGCTGGT 59.391 55.000 0.00 0.00 0.00 4.00
5695 12713 1.404315 CGTTAGGGTCTCTTGCTGGTC 60.404 57.143 0.00 0.00 0.00 4.02
5696 12714 1.066071 GTTAGGGTCTCTTGCTGGTCC 60.066 57.143 0.00 0.00 0.00 4.46
5697 12715 0.413832 TAGGGTCTCTTGCTGGTCCT 59.586 55.000 0.00 0.00 0.00 3.85
5698 12716 0.474660 AGGGTCTCTTGCTGGTCCTT 60.475 55.000 0.00 0.00 0.00 3.36
5699 12717 0.322008 GGGTCTCTTGCTGGTCCTTG 60.322 60.000 0.00 0.00 0.00 3.61
5700 12718 0.322008 GGTCTCTTGCTGGTCCTTGG 60.322 60.000 0.00 0.00 0.00 3.61
5701 12719 0.957888 GTCTCTTGCTGGTCCTTGGC 60.958 60.000 0.00 0.00 0.00 4.52
5702 12720 2.032528 TCTTGCTGGTCCTTGGCG 59.967 61.111 0.00 0.00 0.00 5.69
5703 12721 3.741476 CTTGCTGGTCCTTGGCGC 61.741 66.667 0.00 0.00 0.00 6.53
5707 12725 2.436646 CTGGTCCTTGGCGCGATT 60.437 61.111 12.10 0.00 0.00 3.34
5708 12726 2.033448 TGGTCCTTGGCGCGATTT 59.967 55.556 12.10 0.00 0.00 2.17
5709 12727 1.586154 CTGGTCCTTGGCGCGATTTT 61.586 55.000 12.10 0.00 0.00 1.82
5710 12728 1.175983 TGGTCCTTGGCGCGATTTTT 61.176 50.000 12.10 0.00 0.00 1.94
5727 12745 1.796017 TTTTGTCCAAAAGGACCCCC 58.204 50.000 11.79 0.00 38.04 5.40
5729 12747 0.187361 TTGTCCAAAAGGACCCCCTG 59.813 55.000 11.79 0.00 43.48 4.45
5730 12748 1.076727 GTCCAAAAGGACCCCCTGG 59.923 63.158 3.27 0.00 43.48 4.45
5731 12749 2.283894 CCAAAAGGACCCCCTGGC 60.284 66.667 0.00 0.00 43.48 4.85
5732 12750 2.283894 CAAAAGGACCCCCTGGCC 60.284 66.667 0.00 0.00 43.48 5.36
5733 12751 2.785389 AAAAGGACCCCCTGGCCA 60.785 61.111 4.71 4.71 43.48 5.36
5734 12752 2.408203 AAAAGGACCCCCTGGCCAA 61.408 57.895 7.01 0.00 43.48 4.52
5735 12753 2.673027 AAAAGGACCCCCTGGCCAAC 62.673 60.000 7.01 0.00 43.48 3.77
5736 12754 4.938756 AGGACCCCCTGGCCAACA 62.939 66.667 7.01 0.00 42.42 3.33
5748 12766 2.252976 GGCCAACAGAATTGCCAAAA 57.747 45.000 0.00 0.00 43.46 2.44
5749 12767 2.570135 GGCCAACAGAATTGCCAAAAA 58.430 42.857 0.00 0.00 43.46 1.94
5770 12788 7.920160 AAAAAGACCACATGTCAAAAACATT 57.080 28.000 0.00 0.00 46.73 2.71
5771 12789 6.907206 AAAGACCACATGTCAAAAACATTG 57.093 33.333 0.00 0.00 46.73 2.82
5772 12790 5.596836 AGACCACATGTCAAAAACATTGT 57.403 34.783 0.00 0.00 46.73 2.71
5773 12791 5.591099 AGACCACATGTCAAAAACATTGTC 58.409 37.500 0.00 0.00 46.73 3.18
5774 12792 5.126869 AGACCACATGTCAAAAACATTGTCA 59.873 36.000 0.00 0.00 46.73 3.58
5775 12793 5.728471 ACCACATGTCAAAAACATTGTCAA 58.272 33.333 0.00 0.00 46.73 3.18
5776 12794 6.169094 ACCACATGTCAAAAACATTGTCAAA 58.831 32.000 0.00 0.00 46.73 2.69
5777 12795 6.652481 ACCACATGTCAAAAACATTGTCAAAA 59.348 30.769 0.00 0.00 46.73 2.44
5778 12796 7.173907 ACCACATGTCAAAAACATTGTCAAAAA 59.826 29.630 0.00 0.00 46.73 1.94
5779 12797 7.693120 CCACATGTCAAAAACATTGTCAAAAAG 59.307 33.333 0.00 0.00 46.73 2.27
5780 12798 7.693120 CACATGTCAAAAACATTGTCAAAAAGG 59.307 33.333 0.00 0.00 46.73 3.11
5781 12799 7.605691 ACATGTCAAAAACATTGTCAAAAAGGA 59.394 29.630 0.00 0.00 46.73 3.36
5782 12800 7.357951 TGTCAAAAACATTGTCAAAAAGGAC 57.642 32.000 0.00 0.00 33.90 3.85
5783 12801 6.370166 TGTCAAAAACATTGTCAAAAAGGACC 59.630 34.615 0.00 0.00 32.98 4.46
5784 12802 5.877564 TCAAAAACATTGTCAAAAAGGACCC 59.122 36.000 0.00 0.00 36.97 4.46
5785 12803 4.415881 AAACATTGTCAAAAAGGACCCC 57.584 40.909 0.00 0.00 36.97 4.95
5786 12804 2.325484 ACATTGTCAAAAAGGACCCCC 58.675 47.619 0.00 0.00 36.97 5.40
5788 12806 2.375014 TTGTCAAAAAGGACCCCCTC 57.625 50.000 0.00 0.00 43.48 4.30
5789 12807 0.109723 TGTCAAAAAGGACCCCCTCG 59.890 55.000 0.00 0.00 43.48 4.63
5790 12808 1.074248 TCAAAAAGGACCCCCTCGC 59.926 57.895 0.00 0.00 43.48 5.03
5791 12809 1.074951 CAAAAAGGACCCCCTCGCT 59.925 57.895 0.00 0.00 43.48 4.93
5792 12810 0.326927 CAAAAAGGACCCCCTCGCTA 59.673 55.000 0.00 0.00 43.48 4.26
5793 12811 0.618981 AAAAAGGACCCCCTCGCTAG 59.381 55.000 0.00 0.00 43.48 3.42
5794 12812 0.546988 AAAAGGACCCCCTCGCTAGT 60.547 55.000 0.00 0.00 43.48 2.57
5795 12813 1.265454 AAAGGACCCCCTCGCTAGTG 61.265 60.000 0.00 0.00 43.48 2.74
5796 12814 3.155167 GGACCCCCTCGCTAGTGG 61.155 72.222 2.90 0.00 0.00 4.00
5797 12815 3.851128 GACCCCCTCGCTAGTGGC 61.851 72.222 2.90 0.00 37.64 5.01
5890 12908 4.728102 CGGCCGCGCGGGATATAA 62.728 66.667 45.81 0.00 38.47 0.98
5891 12909 3.116531 GGCCGCGCGGGATATAAC 61.117 66.667 45.81 28.65 38.47 1.89
5892 12910 3.116531 GCCGCGCGGGATATAACC 61.117 66.667 45.81 25.49 38.47 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.859745 CGTGGACGGATGTATCATTTG 57.140 47.619 0.00 0.00 35.37 2.32
13 14 4.498520 AGAGCATCGCCGTGGACG 62.499 66.667 0.00 0.00 42.67 4.79
14 15 2.583593 GAGAGCATCGCCGTGGAC 60.584 66.667 0.00 0.00 42.67 4.02
15 16 3.068064 TGAGAGCATCGCCGTGGA 61.068 61.111 0.00 0.00 42.67 4.02
16 17 2.887568 GTGAGAGCATCGCCGTGG 60.888 66.667 0.00 0.00 42.67 4.94
21 22 2.887568 CACCGGTGAGAGCATCGC 60.888 66.667 31.31 0.00 46.99 4.58
23 24 2.103042 GTGCACCGGTGAGAGCATC 61.103 63.158 38.30 18.37 39.43 3.91
24 25 2.046892 GTGCACCGGTGAGAGCAT 60.047 61.111 38.30 0.00 39.43 3.79
25 26 4.662961 CGTGCACCGGTGAGAGCA 62.663 66.667 38.30 25.38 34.10 4.26
48 49 4.760047 CCAACACCTCTCGGGGCG 62.760 72.222 0.00 0.00 37.12 6.13
49 50 2.890766 TTCCAACACCTCTCGGGGC 61.891 63.158 0.00 0.00 37.12 5.80
50 51 1.003718 GTTCCAACACCTCTCGGGG 60.004 63.158 0.00 0.00 40.60 5.73
51 52 1.003718 GGTTCCAACACCTCTCGGG 60.004 63.158 0.00 0.00 41.89 5.14
52 53 1.374252 CGGTTCCAACACCTCTCGG 60.374 63.158 0.00 0.00 34.22 4.63
53 54 1.374252 CCGGTTCCAACACCTCTCG 60.374 63.158 0.00 0.00 34.22 4.04
54 55 0.971386 TACCGGTTCCAACACCTCTC 59.029 55.000 15.04 0.00 34.22 3.20
55 56 0.974383 CTACCGGTTCCAACACCTCT 59.026 55.000 15.04 0.00 34.22 3.69
56 57 0.036671 CCTACCGGTTCCAACACCTC 60.037 60.000 15.04 0.00 34.22 3.85
57 58 1.486145 CCCTACCGGTTCCAACACCT 61.486 60.000 15.04 0.00 34.22 4.00
58 59 1.002990 CCCTACCGGTTCCAACACC 60.003 63.158 15.04 0.00 0.00 4.16
59 60 1.002990 CCCCTACCGGTTCCAACAC 60.003 63.158 15.04 0.00 0.00 3.32
60 61 2.225596 CCCCCTACCGGTTCCAACA 61.226 63.158 15.04 0.00 0.00 3.33
61 62 1.276859 ATCCCCCTACCGGTTCCAAC 61.277 60.000 15.04 0.00 0.00 3.77
62 63 0.550638 AATCCCCCTACCGGTTCCAA 60.551 55.000 15.04 0.00 0.00 3.53
63 64 1.083329 AATCCCCCTACCGGTTCCA 59.917 57.895 15.04 0.00 0.00 3.53
64 65 1.530283 CAATCCCCCTACCGGTTCC 59.470 63.158 15.04 0.00 0.00 3.62
65 66 1.153025 GCAATCCCCCTACCGGTTC 60.153 63.158 15.04 0.00 0.00 3.62
66 67 1.618447 AGCAATCCCCCTACCGGTT 60.618 57.895 15.04 0.00 0.00 4.44
67 68 2.042261 AGCAATCCCCCTACCGGT 59.958 61.111 13.98 13.98 0.00 5.28
68 69 2.510906 CAGCAATCCCCCTACCGG 59.489 66.667 0.00 0.00 0.00 5.28
69 70 1.632018 TTCCAGCAATCCCCCTACCG 61.632 60.000 0.00 0.00 0.00 4.02
70 71 0.106669 GTTCCAGCAATCCCCCTACC 60.107 60.000 0.00 0.00 0.00 3.18
71 72 0.106669 GGTTCCAGCAATCCCCCTAC 60.107 60.000 0.00 0.00 0.00 3.18
72 73 1.632018 CGGTTCCAGCAATCCCCCTA 61.632 60.000 0.00 0.00 0.00 3.53
73 74 2.983879 CGGTTCCAGCAATCCCCCT 61.984 63.158 0.00 0.00 0.00 4.79
74 75 2.440247 CGGTTCCAGCAATCCCCC 60.440 66.667 0.00 0.00 0.00 5.40
75 76 3.140814 GCGGTTCCAGCAATCCCC 61.141 66.667 0.00 0.00 34.19 4.81
76 77 2.361104 TGCGGTTCCAGCAATCCC 60.361 61.111 6.06 0.00 42.18 3.85
77 78 1.648467 GACTGCGGTTCCAGCAATCC 61.648 60.000 0.00 0.00 44.67 3.01
78 79 1.648467 GGACTGCGGTTCCAGCAATC 61.648 60.000 0.00 7.95 44.67 2.67
79 80 1.675641 GGACTGCGGTTCCAGCAAT 60.676 57.895 0.00 1.07 44.67 3.56
80 81 2.281484 GGACTGCGGTTCCAGCAA 60.281 61.111 0.00 0.00 44.67 3.91
81 82 4.329545 GGGACTGCGGTTCCAGCA 62.330 66.667 19.02 7.75 40.82 4.41
83 84 4.760047 CGGGGACTGCGGTTCCAG 62.760 72.222 24.96 17.33 42.93 3.86
85 86 3.325201 ATTCGGGGACTGCGGTTCC 62.325 63.158 15.52 15.52 40.41 3.62
86 87 2.106683 CATTCGGGGACTGCGGTTC 61.107 63.158 0.00 0.00 32.53 3.62
87 88 2.046314 CATTCGGGGACTGCGGTT 60.046 61.111 0.00 0.00 32.53 4.44
88 89 4.778143 GCATTCGGGGACTGCGGT 62.778 66.667 0.00 0.00 29.40 5.68
89 90 3.088941 TAGCATTCGGGGACTGCGG 62.089 63.158 0.00 0.00 41.91 5.69
90 91 1.883084 GTAGCATTCGGGGACTGCG 60.883 63.158 2.88 0.00 41.91 5.18
91 92 1.523938 GGTAGCATTCGGGGACTGC 60.524 63.158 0.26 0.26 38.28 4.40
92 93 0.469917 ATGGTAGCATTCGGGGACTG 59.530 55.000 0.40 0.00 0.00 3.51
93 94 0.469917 CATGGTAGCATTCGGGGACT 59.530 55.000 4.25 0.00 0.00 3.85
94 95 0.468226 TCATGGTAGCATTCGGGGAC 59.532 55.000 4.25 0.00 0.00 4.46
95 96 0.468226 GTCATGGTAGCATTCGGGGA 59.532 55.000 4.25 0.00 0.00 4.81
96 97 0.180171 TGTCATGGTAGCATTCGGGG 59.820 55.000 4.25 0.00 0.00 5.73
97 98 2.036958 TTGTCATGGTAGCATTCGGG 57.963 50.000 4.25 0.00 0.00 5.14
98 99 3.009723 AGTTTGTCATGGTAGCATTCGG 58.990 45.455 4.25 0.00 0.00 4.30
99 100 3.935203 AGAGTTTGTCATGGTAGCATTCG 59.065 43.478 4.25 0.00 0.00 3.34
100 101 4.033358 CGAGAGTTTGTCATGGTAGCATTC 59.967 45.833 4.25 2.49 0.00 2.67
101 102 3.935203 CGAGAGTTTGTCATGGTAGCATT 59.065 43.478 4.25 0.00 0.00 3.56
102 103 3.525537 CGAGAGTTTGTCATGGTAGCAT 58.474 45.455 0.40 0.40 0.00 3.79
103 104 2.353704 CCGAGAGTTTGTCATGGTAGCA 60.354 50.000 0.00 0.00 0.00 3.49
104 105 2.094182 TCCGAGAGTTTGTCATGGTAGC 60.094 50.000 0.00 0.00 0.00 3.58
105 106 3.868757 TCCGAGAGTTTGTCATGGTAG 57.131 47.619 0.00 0.00 0.00 3.18
106 107 3.616560 GCTTCCGAGAGTTTGTCATGGTA 60.617 47.826 0.00 0.00 0.00 3.25
107 108 2.872038 GCTTCCGAGAGTTTGTCATGGT 60.872 50.000 0.00 0.00 0.00 3.55
108 109 1.734465 GCTTCCGAGAGTTTGTCATGG 59.266 52.381 0.00 0.00 0.00 3.66
109 110 2.414481 CAGCTTCCGAGAGTTTGTCATG 59.586 50.000 0.00 0.00 0.00 3.07
110 111 2.693069 CAGCTTCCGAGAGTTTGTCAT 58.307 47.619 0.00 0.00 0.00 3.06
111 112 1.873903 GCAGCTTCCGAGAGTTTGTCA 60.874 52.381 0.00 0.00 0.00 3.58
112 113 0.793250 GCAGCTTCCGAGAGTTTGTC 59.207 55.000 0.00 0.00 0.00 3.18
113 114 0.106708 TGCAGCTTCCGAGAGTTTGT 59.893 50.000 0.00 0.00 0.00 2.83
114 115 1.396301 GATGCAGCTTCCGAGAGTTTG 59.604 52.381 0.00 0.00 0.00 2.93
115 116 1.677217 GGATGCAGCTTCCGAGAGTTT 60.677 52.381 11.44 0.00 0.00 2.66
116 117 0.107945 GGATGCAGCTTCCGAGAGTT 60.108 55.000 11.44 0.00 0.00 3.01
117 118 1.260538 TGGATGCAGCTTCCGAGAGT 61.261 55.000 19.78 0.00 35.94 3.24
118 119 0.106335 ATGGATGCAGCTTCCGAGAG 59.894 55.000 19.78 0.00 35.94 3.20
119 120 0.179065 CATGGATGCAGCTTCCGAGA 60.179 55.000 19.78 5.70 35.94 4.04
120 121 1.164662 CCATGGATGCAGCTTCCGAG 61.165 60.000 19.78 14.75 35.94 4.63
121 122 1.153107 CCATGGATGCAGCTTCCGA 60.153 57.895 19.78 11.10 35.94 4.55
126 127 2.441532 GTGGCCATGGATGCAGCT 60.442 61.111 18.40 0.00 0.00 4.24
137 138 1.481901 ATTGCAGCATTTGGTGGCCA 61.482 50.000 0.00 0.00 43.24 5.36
139 140 0.800012 CAATTGCAGCATTTGGTGGC 59.200 50.000 18.53 4.94 43.24 5.01
144 145 1.921887 CTACGCCAATTGCAGCATTTG 59.078 47.619 19.12 19.12 41.33 2.32
153 154 0.370273 GCACTCGTCTACGCCAATTG 59.630 55.000 0.00 0.00 39.60 2.32
156 157 1.080772 CAGCACTCGTCTACGCCAA 60.081 57.895 0.00 0.00 39.60 4.52
157 158 2.566529 CAGCACTCGTCTACGCCA 59.433 61.111 0.00 0.00 39.60 5.69
158 159 2.202623 CCAGCACTCGTCTACGCC 60.203 66.667 0.00 0.00 39.60 5.68
161 162 1.014564 GGTTGCCAGCACTCGTCTAC 61.015 60.000 0.00 0.00 0.00 2.59
162 163 1.292223 GGTTGCCAGCACTCGTCTA 59.708 57.895 0.00 0.00 0.00 2.59
207 211 1.281867 CTTGGACCCCTTCATAGCACA 59.718 52.381 0.00 0.00 0.00 4.57
214 218 1.460689 ACCGTCTTGGACCCCTTCA 60.461 57.895 0.00 0.00 42.00 3.02
243 247 1.152830 AAGCATTCCCGGTGGTTGT 59.847 52.632 7.14 0.00 36.09 3.32
246 250 2.676471 GCAAGCATTCCCGGTGGT 60.676 61.111 0.00 0.00 0.00 4.16
285 289 2.742053 CAAGTTGGTAGCGCAACATAGT 59.258 45.455 11.47 0.00 34.04 2.12
291 295 1.602323 CCCCAAGTTGGTAGCGCAA 60.602 57.895 20.54 0.00 35.17 4.85
294 298 2.750237 GCCCCCAAGTTGGTAGCG 60.750 66.667 20.54 5.09 35.17 4.26
295 299 2.750237 CGCCCCCAAGTTGGTAGC 60.750 66.667 20.54 19.61 35.17 3.58
297 301 4.708386 CGCGCCCCCAAGTTGGTA 62.708 66.667 20.54 0.00 35.17 3.25
306 310 1.005512 AAAAATTTGTCGCGCCCCC 60.006 52.632 0.00 0.00 0.00 5.40
317 321 4.948341 ACCTAAACTCCGGCAAAAATTT 57.052 36.364 0.00 0.00 0.00 1.82
327 331 1.588139 CGCGCCTACCTAAACTCCG 60.588 63.158 0.00 0.00 0.00 4.63
328 332 0.527169 GTCGCGCCTACCTAAACTCC 60.527 60.000 0.00 0.00 0.00 3.85
340 344 2.249535 ATCTCATGCATGTCGCGCC 61.250 57.895 25.43 0.00 46.97 6.53
341 345 1.082951 CATCTCATGCATGTCGCGC 60.083 57.895 25.43 0.00 46.97 6.86
346 350 3.893521 TCCATGTTCATCTCATGCATGT 58.106 40.909 25.43 4.41 40.63 3.21
348 353 3.826729 CCATCCATGTTCATCTCATGCAT 59.173 43.478 0.00 0.00 40.63 3.96
353 358 7.614974 TGTTTTATTCCATCCATGTTCATCTCA 59.385 33.333 0.00 0.00 0.00 3.27
355 360 7.959658 TGTTTTATTCCATCCATGTTCATCT 57.040 32.000 0.00 0.00 0.00 2.90
367 373 7.180766 ACACCCTCATTTGATGTTTTATTCCAT 59.819 33.333 0.00 0.00 0.00 3.41
373 379 5.830457 TCACACACCCTCATTTGATGTTTTA 59.170 36.000 0.00 0.00 0.00 1.52
380 386 1.542328 CCGTCACACACCCTCATTTGA 60.542 52.381 0.00 0.00 0.00 2.69
385 391 0.390124 GTAACCGTCACACACCCTCA 59.610 55.000 0.00 0.00 0.00 3.86
387 393 1.364901 CGTAACCGTCACACACCCT 59.635 57.895 0.00 0.00 0.00 4.34
396 402 1.227176 GCCCTCATCCGTAACCGTC 60.227 63.158 0.00 0.00 0.00 4.79
397 403 1.335132 ATGCCCTCATCCGTAACCGT 61.335 55.000 0.00 0.00 0.00 4.83
399 405 1.134220 TGAATGCCCTCATCCGTAACC 60.134 52.381 0.00 0.00 31.27 2.85
400 406 2.325583 TGAATGCCCTCATCCGTAAC 57.674 50.000 0.00 0.00 31.27 2.50
402 408 1.472552 CGTTGAATGCCCTCATCCGTA 60.473 52.381 0.00 0.00 31.27 4.02
404 410 0.461870 TCGTTGAATGCCCTCATCCG 60.462 55.000 0.00 0.00 31.27 4.18
405 411 1.303309 CTCGTTGAATGCCCTCATCC 58.697 55.000 0.00 0.00 31.27 3.51
406 412 0.659957 GCTCGTTGAATGCCCTCATC 59.340 55.000 0.00 0.00 31.27 2.92
407 413 0.035152 TGCTCGTTGAATGCCCTCAT 60.035 50.000 0.00 0.00 33.53 2.90
408 414 0.674581 CTGCTCGTTGAATGCCCTCA 60.675 55.000 0.00 0.00 0.00 3.86
417 440 0.596600 GGTCGTTCACTGCTCGTTGA 60.597 55.000 0.00 0.00 0.00 3.18
426 449 1.597797 TATTCGCCCGGTCGTTCACT 61.598 55.000 4.19 0.00 0.00 3.41
428 451 0.176219 AATATTCGCCCGGTCGTTCA 59.824 50.000 4.19 0.00 0.00 3.18
431 454 1.227438 CCAATATTCGCCCGGTCGT 60.227 57.895 4.19 0.00 0.00 4.34
438 461 3.670377 GCCCGCCCAATATTCGCC 61.670 66.667 0.00 0.00 0.00 5.54
439 462 2.904866 TGCCCGCCCAATATTCGC 60.905 61.111 0.00 0.00 0.00 4.70
465 488 0.392998 TGCTAAAGGGCACTGCTAGC 60.393 55.000 19.05 19.05 38.51 3.42
466 489 2.113860 TTGCTAAAGGGCACTGCTAG 57.886 50.000 0.00 0.00 42.27 3.42
472 495 3.255642 TCTTCACAATTGCTAAAGGGCAC 59.744 43.478 5.05 0.00 42.27 5.01
489 512 6.422701 CACGGCCGACTATTATTATTTCTTCA 59.577 38.462 35.90 0.00 0.00 3.02
497 520 3.125316 GCAACACGGCCGACTATTATTA 58.875 45.455 35.90 0.00 0.00 0.98
499 522 1.138266 AGCAACACGGCCGACTATTAT 59.862 47.619 35.90 3.57 0.00 1.28
500 523 0.533491 AGCAACACGGCCGACTATTA 59.467 50.000 35.90 0.00 0.00 0.98
502 525 1.447838 CAGCAACACGGCCGACTAT 60.448 57.895 35.90 12.18 0.00 2.12
503 526 2.048597 CAGCAACACGGCCGACTA 60.049 61.111 35.90 0.00 0.00 2.59
508 535 1.300853 ATTTTGCAGCAACACGGCC 60.301 52.632 7.54 0.00 38.92 6.13
554 581 6.149308 TGTCTTGTGTGACAGGCTTAATAATG 59.851 38.462 0.00 0.00 41.43 1.90
569 596 4.060900 ACAAGTAGCTCATGTCTTGTGTG 58.939 43.478 15.20 3.87 45.38 3.82
571 598 4.627467 GGTACAAGTAGCTCATGTCTTGTG 59.373 45.833 20.62 10.44 46.16 3.33
594 623 0.319555 TCGCTTCCTTGTGTCCGAAG 60.320 55.000 0.00 0.00 36.82 3.79
595 624 0.319555 CTCGCTTCCTTGTGTCCGAA 60.320 55.000 0.00 0.00 0.00 4.30
597 626 0.600255 AACTCGCTTCCTTGTGTCCG 60.600 55.000 0.00 0.00 0.00 4.79
598 627 0.868406 CAACTCGCTTCCTTGTGTCC 59.132 55.000 0.00 0.00 0.00 4.02
599 628 0.235926 GCAACTCGCTTCCTTGTGTC 59.764 55.000 0.00 0.00 37.77 3.67
620 654 3.604875 ATAACGTCGAGGGTTGACAAT 57.395 42.857 10.27 0.00 36.11 2.71
636 670 5.033507 GGACGGAGAAAGTACGAGAATAAC 58.966 45.833 0.00 0.00 0.00 1.89
642 676 3.293311 TTTGGACGGAGAAAGTACGAG 57.707 47.619 0.00 0.00 0.00 4.18
644 678 5.636543 AGTATTTTTGGACGGAGAAAGTACG 59.363 40.000 0.00 0.00 33.43 3.67
645 679 7.041576 ACAAGTATTTTTGGACGGAGAAAGTAC 60.042 37.037 0.00 0.00 32.32 2.73
647 681 5.826208 ACAAGTATTTTTGGACGGAGAAAGT 59.174 36.000 0.00 0.00 32.32 2.66
648 682 6.017440 TGACAAGTATTTTTGGACGGAGAAAG 60.017 38.462 0.00 0.00 32.32 2.62
649 683 5.823570 TGACAAGTATTTTTGGACGGAGAAA 59.176 36.000 0.00 0.00 32.32 2.52
650 684 5.369833 TGACAAGTATTTTTGGACGGAGAA 58.630 37.500 0.00 0.00 32.32 2.87
652 686 5.880054 ATGACAAGTATTTTTGGACGGAG 57.120 39.130 0.00 0.00 32.32 4.63
653 687 5.765677 TCAATGACAAGTATTTTTGGACGGA 59.234 36.000 0.00 0.00 32.32 4.69
654 688 6.007936 TCAATGACAAGTATTTTTGGACGG 57.992 37.500 0.00 0.00 32.32 4.79
655 689 7.922505 TTTCAATGACAAGTATTTTTGGACG 57.077 32.000 0.00 0.00 32.32 4.79
656 690 8.711457 CCATTTCAATGACAAGTATTTTTGGAC 58.289 33.333 0.81 0.00 38.70 4.02
657 691 8.646004 TCCATTTCAATGACAAGTATTTTTGGA 58.354 29.630 0.81 0.00 38.70 3.53
658 692 8.830201 TCCATTTCAATGACAAGTATTTTTGG 57.170 30.769 0.81 0.00 38.70 3.28
660 694 9.439500 CCATCCATTTCAATGACAAGTATTTTT 57.561 29.630 0.81 0.00 38.70 1.94
661 695 8.814931 TCCATCCATTTCAATGACAAGTATTTT 58.185 29.630 0.81 0.00 38.70 1.82
662 696 8.365060 TCCATCCATTTCAATGACAAGTATTT 57.635 30.769 0.81 0.00 38.70 1.40
663 697 7.959658 TCCATCCATTTCAATGACAAGTATT 57.040 32.000 0.81 0.00 38.70 1.89
664 698 9.818270 ATATCCATCCATTTCAATGACAAGTAT 57.182 29.630 0.81 0.00 38.70 2.12
665 699 9.288576 GATATCCATCCATTTCAATGACAAGTA 57.711 33.333 0.81 0.00 38.70 2.24
666 700 7.040892 CGATATCCATCCATTTCAATGACAAGT 60.041 37.037 0.81 0.00 38.70 3.16
667 701 7.040892 ACGATATCCATCCATTTCAATGACAAG 60.041 37.037 0.81 0.00 38.70 3.16
668 702 6.772233 ACGATATCCATCCATTTCAATGACAA 59.228 34.615 0.81 0.00 38.70 3.18
669 703 6.298361 ACGATATCCATCCATTTCAATGACA 58.702 36.000 0.81 0.00 38.70 3.58
670 704 6.808008 ACGATATCCATCCATTTCAATGAC 57.192 37.500 0.81 0.00 38.70 3.06
671 705 6.147656 CGAACGATATCCATCCATTTCAATGA 59.852 38.462 0.81 0.00 38.70 2.57
672 706 6.073058 ACGAACGATATCCATCCATTTCAATG 60.073 38.462 0.14 0.00 36.17 2.82
673 707 5.997746 ACGAACGATATCCATCCATTTCAAT 59.002 36.000 0.14 0.00 0.00 2.57
674 708 5.364778 ACGAACGATATCCATCCATTTCAA 58.635 37.500 0.14 0.00 0.00 2.69
675 709 4.956085 ACGAACGATATCCATCCATTTCA 58.044 39.130 0.14 0.00 0.00 2.69
676 710 5.924475 AACGAACGATATCCATCCATTTC 57.076 39.130 0.14 0.00 0.00 2.17
677 711 6.317642 TGAAAACGAACGATATCCATCCATTT 59.682 34.615 0.14 0.00 0.00 2.32
678 712 5.820423 TGAAAACGAACGATATCCATCCATT 59.180 36.000 0.14 0.00 0.00 3.16
679 713 5.364778 TGAAAACGAACGATATCCATCCAT 58.635 37.500 0.14 0.00 0.00 3.41
680 714 4.760878 TGAAAACGAACGATATCCATCCA 58.239 39.130 0.14 0.00 0.00 3.41
681 715 5.293569 ACTTGAAAACGAACGATATCCATCC 59.706 40.000 0.14 0.00 0.00 3.51
682 716 6.345920 ACTTGAAAACGAACGATATCCATC 57.654 37.500 0.14 0.00 0.00 3.51
683 717 5.293569 GGACTTGAAAACGAACGATATCCAT 59.706 40.000 0.14 0.00 0.00 3.41
684 718 4.628333 GGACTTGAAAACGAACGATATCCA 59.372 41.667 0.14 0.00 0.00 3.41
685 719 4.259690 CGGACTTGAAAACGAACGATATCC 60.260 45.833 0.14 0.00 0.00 2.59
686 720 4.778154 GCGGACTTGAAAACGAACGATATC 60.778 45.833 0.14 0.00 0.00 1.63
698 732 1.172180 CCTTGGCTGCGGACTTGAAA 61.172 55.000 0.00 0.00 0.00 2.69
728 763 0.719465 GGCATCTGGTTACGTCGTTG 59.281 55.000 1.78 0.00 0.00 4.10
729 764 0.319083 TGGCATCTGGTTACGTCGTT 59.681 50.000 1.78 0.00 0.00 3.85
745 780 2.482296 ATTTCAGCGCTGCTTGTGGC 62.482 55.000 32.44 0.00 36.40 5.01
757 792 9.827411 CTTTTACTTTTAGTAGTCCATTTCAGC 57.173 33.333 0.00 0.00 31.47 4.26
805 968 3.466712 TTTGACTAGTACGCTGAGACG 57.533 47.619 0.00 0.00 39.50 4.18
809 972 3.570975 TCTGGTTTTGACTAGTACGCTGA 59.429 43.478 0.00 0.00 0.00 4.26
814 977 6.310711 CGAAGGAATCTGGTTTTGACTAGTAC 59.689 42.308 0.00 0.00 0.00 2.73
845 1268 3.246619 ACTGCGAAACAAAAAGCGAAAA 58.753 36.364 0.00 0.00 0.00 2.29
849 1548 1.701431 CGTACTGCGAAACAAAAAGCG 59.299 47.619 0.00 0.00 44.77 4.68
898 1613 1.452108 GCGGAGGGGGACAATGAAG 60.452 63.158 0.00 0.00 0.00 3.02
934 1649 0.178973 CCTTCCCCTTTCCGTGGTTT 60.179 55.000 0.00 0.00 0.00 3.27
950 1665 2.554124 GCTTTGCTTCCTCTTCCTCCTT 60.554 50.000 0.00 0.00 0.00 3.36
958 1673 1.356124 TCCAGAGCTTTGCTTCCTCT 58.644 50.000 0.00 0.00 39.88 3.69
977 1695 1.303724 AGGGCGGAGATCGATCGAT 60.304 57.895 29.76 29.76 42.43 3.59
978 1696 1.966972 GAGGGCGGAGATCGATCGA 60.967 63.158 21.86 21.86 42.43 3.59
979 1697 2.563942 GAGGGCGGAGATCGATCG 59.436 66.667 19.33 9.36 42.43 3.69
1008 1726 1.285078 TCAATGTCGAGAGGGAGGAGA 59.715 52.381 0.00 0.00 0.00 3.71
1009 1727 1.680735 CTCAATGTCGAGAGGGAGGAG 59.319 57.143 5.62 0.00 34.79 3.69
1039 1757 1.605058 CGCTACTACCTGGTGGCTGT 61.605 60.000 10.23 5.80 40.69 4.40
1042 1760 2.202892 GCGCTACTACCTGGTGGC 60.203 66.667 10.23 7.62 39.72 5.01
1092 1818 1.167851 CCGAGCAGGAAAAATCAGCA 58.832 50.000 0.00 0.00 45.00 4.41
1154 1890 1.000486 AAGCCCTGACGCCTAGAGA 60.000 57.895 0.00 0.00 0.00 3.10
1240 1987 6.046593 CGTGCCTAAACCTGTATTGAAGATA 58.953 40.000 0.00 0.00 0.00 1.98
1242 1989 4.250464 CGTGCCTAAACCTGTATTGAAGA 58.750 43.478 0.00 0.00 0.00 2.87
1248 1995 0.616371 TGGCGTGCCTAAACCTGTAT 59.384 50.000 12.84 0.00 36.94 2.29
1335 2086 1.744368 CAGCAGGCGCAAGATCACT 60.744 57.895 10.83 0.00 42.27 3.41
1348 2099 0.749454 AATAAAGCTCGGGGCAGCAG 60.749 55.000 1.17 0.00 42.40 4.24
1351 2102 4.137543 AGAAATAATAAAGCTCGGGGCAG 58.862 43.478 1.17 0.00 44.79 4.85
1369 2120 9.416284 GGATGGGAGTAATAATAACCAAAGAAA 57.584 33.333 0.00 0.00 0.00 2.52
1447 2214 6.787085 AGCACACAAAAATCTCAGTACTAC 57.213 37.500 0.00 0.00 0.00 2.73
1455 2222 5.429957 ACAGAGAAGCACACAAAAATCTC 57.570 39.130 0.00 0.00 34.84 2.75
1469 2236 2.298446 TCTGCCAGAGACAACAGAGAAG 59.702 50.000 0.00 0.00 34.35 2.85
1500 2267 2.373707 GGAGCAGAGCAGGTGGGAT 61.374 63.158 0.00 0.00 0.00 3.85
1526 2309 3.402681 AGACAGGGGTGGATGGCG 61.403 66.667 0.00 0.00 0.00 5.69
1537 2320 3.314331 ACCGCCCAGACAGACAGG 61.314 66.667 0.00 0.00 0.00 4.00
1588 2371 4.227300 ACAGCTCTAATCAATGGTGGGTAA 59.773 41.667 0.00 0.00 32.92 2.85
1648 2431 2.514592 CATAGCTGGTGCACGGGG 60.515 66.667 11.45 4.38 42.74 5.73
1675 2458 2.965572 AAATTCCGAATGCATGGGTG 57.034 45.000 14.75 0.00 0.00 4.61
1692 2475 5.241403 TCTTTGCTGTGATTCCTCCTAAA 57.759 39.130 0.00 0.00 0.00 1.85
1704 2487 1.005340 GATCGCTCCTCTTTGCTGTG 58.995 55.000 0.00 0.00 0.00 3.66
1768 2551 4.061596 GCCGAGAATGAGGAAAAGGATAG 58.938 47.826 0.00 0.00 0.00 2.08
1798 2581 4.714632 ACTGAGATTTCCGGAAACTTTCA 58.285 39.130 31.17 27.80 32.51 2.69
1874 2802 7.557358 TGAAGCCAATATCAGAATGTAACATGT 59.443 33.333 0.00 0.00 37.40 3.21
1914 2846 4.871933 AGCAACGATCCAAAGGAAAATT 57.128 36.364 0.00 0.00 34.34 1.82
1951 2883 7.235079 TGTTATCTCCAAAACCTTGATACCAA 58.765 34.615 0.00 0.00 34.14 3.67
1952 2884 6.785076 TGTTATCTCCAAAACCTTGATACCA 58.215 36.000 0.00 0.00 34.14 3.25
1960 2897 5.880901 AGACACATGTTATCTCCAAAACCT 58.119 37.500 0.00 0.00 0.00 3.50
2265 3245 1.756538 CACAAGCCCAACTCCTTGTTT 59.243 47.619 3.50 0.00 46.86 2.83
2281 3261 9.905713 ATCCTTATCTAAATTAGAGTTGCACAA 57.094 29.630 8.78 0.00 38.38 3.33
2434 3421 1.963338 GCTGAAGAGCTTGGCACGT 60.963 57.895 0.00 0.00 42.52 4.49
2729 3753 8.918961 ACTAGAAGAATGAAAGTCTATTGACG 57.081 34.615 0.00 0.00 42.57 4.35
2847 3871 5.289675 CCAGTACTGACTAAGCAAAAGATCG 59.710 44.000 24.68 0.00 33.32 3.69
2906 3932 8.424274 TCGAAATTATATATGCATGCTACCTG 57.576 34.615 20.33 0.00 0.00 4.00
2911 3937 7.012704 GTCCCATCGAAATTATATATGCATGCT 59.987 37.037 20.33 7.07 0.00 3.79
2930 3957 3.507233 TCAAGCTTTGTGATTGTCCCATC 59.493 43.478 0.00 0.00 42.20 3.51
3004 4032 1.915614 GCATCACTGGTGCTGGTTCG 61.916 60.000 7.05 0.00 39.45 3.95
3157 4193 8.685427 CCAACCAGAATATTCATGTCAATGTAA 58.315 33.333 17.56 0.00 35.15 2.41
3268 4305 7.175467 AGCTCAGAAACATGACACAATTGATAA 59.825 33.333 13.59 0.00 0.00 1.75
3288 4325 5.987953 AGTATACATGCACAACATAGCTCAG 59.012 40.000 5.50 0.00 36.64 3.35
3541 4593 2.814336 GCCATAACCGAAGATCATTCCC 59.186 50.000 0.00 0.00 0.00 3.97
3585 4637 1.134280 CCATGCCAAGAGTAGTCCCAG 60.134 57.143 0.00 0.00 0.00 4.45
3622 4674 1.302112 TTCGCGGAACAATGAGCCA 60.302 52.632 6.13 0.00 0.00 4.75
3708 4766 7.381139 TGCATTTAAAAAGGAACGAAACAGATC 59.619 33.333 0.00 0.00 0.00 2.75
3717 4775 3.648009 TGCCTGCATTTAAAAAGGAACG 58.352 40.909 15.54 0.00 30.92 3.95
3728 4788 4.088634 TCTCTTTAACCATGCCTGCATTT 58.911 39.130 0.97 0.00 33.90 2.32
4003 5070 5.324409 TGGCCTCAATAGTCTGACAAAATT 58.676 37.500 10.88 4.16 0.00 1.82
4048 5117 4.700700 TCAGATGACAGATGCACATTAGG 58.299 43.478 0.00 0.00 0.00 2.69
4371 5525 7.707624 TTGGCATAGAGAACAATTTCTTCAT 57.292 32.000 0.00 0.00 42.53 2.57
4441 5614 7.536622 GTGTGCAATCAAACTTCTCTATCTTTG 59.463 37.037 0.00 0.00 0.00 2.77
4442 5615 7.229306 TGTGTGCAATCAAACTTCTCTATCTTT 59.771 33.333 0.00 0.00 31.59 2.52
4468 5641 6.409524 TCCAAAATGCAAGATGAAGAAAGT 57.590 33.333 0.00 0.00 0.00 2.66
4469 5642 7.900782 AATCCAAAATGCAAGATGAAGAAAG 57.099 32.000 0.00 0.00 0.00 2.62
4471 5644 8.352137 TCTAATCCAAAATGCAAGATGAAGAA 57.648 30.769 0.00 0.00 0.00 2.52
4473 5646 7.147949 ACCTCTAATCCAAAATGCAAGATGAAG 60.148 37.037 0.00 0.00 0.00 3.02
4474 5647 6.664816 ACCTCTAATCCAAAATGCAAGATGAA 59.335 34.615 0.00 0.00 0.00 2.57
4475 5648 6.189859 ACCTCTAATCCAAAATGCAAGATGA 58.810 36.000 0.00 0.00 0.00 2.92
4476 5649 6.461110 ACCTCTAATCCAAAATGCAAGATG 57.539 37.500 0.00 0.00 0.00 2.90
4480 5653 5.885912 GGTCTACCTCTAATCCAAAATGCAA 59.114 40.000 0.00 0.00 0.00 4.08
4498 5671 4.954826 AGTAATACACTCAGGTGGGTCTAC 59.045 45.833 0.00 0.00 46.85 2.59
4512 5685 4.811557 GGATGCTGACCTTGAGTAATACAC 59.188 45.833 0.00 0.00 0.00 2.90
4514 5687 5.023533 TGGATGCTGACCTTGAGTAATAC 57.976 43.478 0.00 0.00 0.00 1.89
4526 5699 3.204526 CTCCTTGAATCTGGATGCTGAC 58.795 50.000 0.00 0.00 0.00 3.51
4531 5704 5.867330 AGATAAGCTCCTTGAATCTGGATG 58.133 41.667 0.00 0.00 0.00 3.51
4540 5713 5.721960 ACTCCTACAAAGATAAGCTCCTTGA 59.278 40.000 0.00 0.00 31.02 3.02
4551 5727 4.757149 GCACTCAACAACTCCTACAAAGAT 59.243 41.667 0.00 0.00 0.00 2.40
4658 5841 7.791029 TCTTATACTTGCCATACTTCACATCA 58.209 34.615 0.00 0.00 0.00 3.07
4724 5907 2.973694 TAGTGAGGATAACGGCAACC 57.026 50.000 0.00 0.00 0.00 3.77
4734 5917 3.961408 ACTGTAAAGGCGATAGTGAGGAT 59.039 43.478 0.00 0.00 39.35 3.24
4801 5984 2.328099 GGTTGGTCCTCTGCGCAAG 61.328 63.158 13.05 11.91 43.44 4.01
4802 5985 2.281484 GGTTGGTCCTCTGCGCAA 60.281 61.111 13.05 1.37 0.00 4.85
5014 6230 7.749377 AGTATAACCATATTAGCTGGGCATA 57.251 36.000 0.00 0.00 38.14 3.14
5213 12222 3.009723 CAAATTATCCCACGCTGTGAGT 58.990 45.455 9.75 0.00 35.23 3.41
5239 12248 4.007644 TGGGTCAGTCTGCAGGCG 62.008 66.667 13.66 8.26 0.00 5.52
5276 12285 5.863935 GGTAGTTGGTTGATTGATTTGCTTC 59.136 40.000 0.00 0.00 0.00 3.86
5279 12288 5.132897 TGGTAGTTGGTTGATTGATTTGC 57.867 39.130 0.00 0.00 0.00 3.68
5283 12292 3.009723 CGCTGGTAGTTGGTTGATTGAT 58.990 45.455 0.00 0.00 0.00 2.57
5337 12346 0.307760 GGCGCCAAATCTATTCACGG 59.692 55.000 24.80 0.00 0.00 4.94
5339 12348 0.307760 CCGGCGCCAAATCTATTCAC 59.692 55.000 28.98 0.00 0.00 3.18
5345 12354 3.918253 TTGCTCCGGCGCCAAATCT 62.918 57.895 28.98 0.00 42.25 2.40
5346 12355 3.401243 CTTGCTCCGGCGCCAAATC 62.401 63.158 28.98 12.95 42.25 2.17
5368 12377 0.184451 ATTTCAGGGCATCGGAGCAT 59.816 50.000 2.61 0.00 35.83 3.79
5394 12403 3.429372 TTTGCCAACTCGGTGCCCT 62.429 57.895 0.00 0.00 36.97 5.19
5432 12444 2.137523 GGTGCCAAATTCAGTTTGCAG 58.862 47.619 0.00 0.00 44.69 4.41
5435 12447 4.326504 AAGAGGTGCCAAATTCAGTTTG 57.673 40.909 0.00 0.00 45.44 2.93
5438 12450 3.070015 CCAAAAGAGGTGCCAAATTCAGT 59.930 43.478 0.00 0.00 0.00 3.41
5536 12551 3.504863 CAAAACTGTATGCACTGCCATC 58.495 45.455 0.00 0.00 0.00 3.51
5549 12564 2.120909 AGCGCTGTGGCAAAACTGT 61.121 52.632 10.39 0.00 38.60 3.55
5565 12580 6.036953 CCTGAATCTTGATAGTCTGAAACAGC 59.963 42.308 0.00 0.00 0.00 4.40
5600 12618 3.756117 CCCTGGTTTATATTCAGAGGGC 58.244 50.000 0.00 0.00 32.59 5.19
5606 12624 7.125391 AGAAAATCTGCCCTGGTTTATATTCA 58.875 34.615 0.00 0.00 0.00 2.57
5610 12628 7.790782 AAAAGAAAATCTGCCCTGGTTTATA 57.209 32.000 0.00 0.00 0.00 0.98
5613 12631 5.104569 TGAAAAAGAAAATCTGCCCTGGTTT 60.105 36.000 0.00 0.00 0.00 3.27
5626 12644 8.082242 GTGAGGCTATTAGCTTGAAAAAGAAAA 58.918 33.333 15.02 0.00 41.99 2.29
5630 12648 5.415701 TGGTGAGGCTATTAGCTTGAAAAAG 59.584 40.000 15.02 0.00 41.99 2.27
5644 12662 2.434843 CCTGGCGATGGTGAGGCTA 61.435 63.158 0.00 0.00 0.00 3.93
5661 12679 2.280823 CTAACGGAGGTCGCTCCACC 62.281 65.000 9.41 6.42 43.49 4.61
5662 12680 1.139095 CTAACGGAGGTCGCTCCAC 59.861 63.158 9.41 0.00 43.49 4.02
5663 12681 2.050350 CCTAACGGAGGTCGCTCCA 61.050 63.158 9.41 0.00 43.49 3.86
5664 12682 2.783288 CCCTAACGGAGGTCGCTCC 61.783 68.421 5.06 0.00 45.03 4.70
5665 12683 2.002509 GACCCTAACGGAGGTCGCTC 62.003 65.000 5.06 0.00 45.03 5.03
5666 12684 2.036890 ACCCTAACGGAGGTCGCT 59.963 61.111 5.06 0.00 45.03 4.93
5667 12685 2.493501 GACCCTAACGGAGGTCGC 59.506 66.667 5.06 0.00 45.03 5.19
5670 12688 1.558233 CAAGAGACCCTAACGGAGGT 58.442 55.000 5.06 0.00 45.03 3.85
5671 12689 0.175989 GCAAGAGACCCTAACGGAGG 59.824 60.000 0.00 0.00 46.25 4.30
5672 12690 1.134965 CAGCAAGAGACCCTAACGGAG 60.135 57.143 0.00 0.00 34.64 4.63
5673 12691 0.895530 CAGCAAGAGACCCTAACGGA 59.104 55.000 0.00 0.00 34.64 4.69
5674 12692 0.108138 CCAGCAAGAGACCCTAACGG 60.108 60.000 0.00 0.00 37.81 4.44
5675 12693 0.608640 ACCAGCAAGAGACCCTAACG 59.391 55.000 0.00 0.00 0.00 3.18
5676 12694 1.066071 GGACCAGCAAGAGACCCTAAC 60.066 57.143 0.00 0.00 0.00 2.34
5677 12695 1.203313 AGGACCAGCAAGAGACCCTAA 60.203 52.381 0.00 0.00 0.00 2.69
5678 12696 0.413832 AGGACCAGCAAGAGACCCTA 59.586 55.000 0.00 0.00 0.00 3.53
5679 12697 0.474660 AAGGACCAGCAAGAGACCCT 60.475 55.000 0.00 0.00 0.00 4.34
5680 12698 0.322008 CAAGGACCAGCAAGAGACCC 60.322 60.000 0.00 0.00 0.00 4.46
5681 12699 0.322008 CCAAGGACCAGCAAGAGACC 60.322 60.000 0.00 0.00 0.00 3.85
5682 12700 0.957888 GCCAAGGACCAGCAAGAGAC 60.958 60.000 0.00 0.00 0.00 3.36
5683 12701 1.376466 GCCAAGGACCAGCAAGAGA 59.624 57.895 0.00 0.00 0.00 3.10
5684 12702 2.037136 CGCCAAGGACCAGCAAGAG 61.037 63.158 0.00 0.00 0.00 2.85
5685 12703 2.032528 CGCCAAGGACCAGCAAGA 59.967 61.111 0.00 0.00 0.00 3.02
5686 12704 3.741476 GCGCCAAGGACCAGCAAG 61.741 66.667 0.00 0.00 0.00 4.01
5690 12708 1.586154 AAAATCGCGCCAAGGACCAG 61.586 55.000 0.00 0.00 0.00 4.00
5691 12709 1.175983 AAAAATCGCGCCAAGGACCA 61.176 50.000 0.00 0.00 0.00 4.02
5692 12710 1.584495 AAAAATCGCGCCAAGGACC 59.416 52.632 0.00 0.00 0.00 4.46
5713 12731 2.852281 GCCAGGGGGTCCTTTTGGA 61.852 63.158 9.40 0.00 42.67 3.53
5714 12732 2.283894 GCCAGGGGGTCCTTTTGG 60.284 66.667 0.00 0.00 42.67 3.28
5715 12733 2.283894 GGCCAGGGGGTCCTTTTG 60.284 66.667 0.00 0.00 42.67 2.44
5716 12734 2.408203 TTGGCCAGGGGGTCCTTTT 61.408 57.895 5.11 0.00 42.67 2.27
5717 12735 2.785389 TTGGCCAGGGGGTCCTTT 60.785 61.111 5.11 0.00 42.67 3.11
5718 12736 3.590574 GTTGGCCAGGGGGTCCTT 61.591 66.667 5.11 0.00 42.67 3.36
5719 12737 4.938756 TGTTGGCCAGGGGGTCCT 62.939 66.667 5.11 0.00 46.26 3.85
5720 12738 4.366684 CTGTTGGCCAGGGGGTCC 62.367 72.222 5.11 0.00 38.32 4.46
5721 12739 2.155197 ATTCTGTTGGCCAGGGGGTC 62.155 60.000 5.11 0.00 41.83 4.46
5722 12740 1.739608 AATTCTGTTGGCCAGGGGGT 61.740 55.000 5.11 0.00 41.83 4.95
5723 12741 1.079073 AATTCTGTTGGCCAGGGGG 59.921 57.895 5.11 0.00 41.83 5.40
5724 12742 1.891722 GCAATTCTGTTGGCCAGGGG 61.892 60.000 5.11 0.00 41.83 4.79
5725 12743 1.593265 GCAATTCTGTTGGCCAGGG 59.407 57.895 5.11 0.00 41.83 4.45
5726 12744 1.593265 GGCAATTCTGTTGGCCAGG 59.407 57.895 5.11 0.23 45.70 4.45
5729 12747 2.252976 TTTTGGCAATTCTGTTGGCC 57.747 45.000 0.00 0.00 46.58 5.36
5757 12775 7.065683 GGTCCTTTTTGACAATGTTTTTGACAT 59.934 33.333 0.00 0.00 40.03 3.06
5758 12776 6.370166 GGTCCTTTTTGACAATGTTTTTGACA 59.630 34.615 0.00 0.00 38.67 3.58
5759 12777 6.183360 GGGTCCTTTTTGACAATGTTTTTGAC 60.183 38.462 0.00 0.00 36.97 3.18
5760 12778 5.877564 GGGTCCTTTTTGACAATGTTTTTGA 59.122 36.000 0.00 0.00 36.97 2.69
5761 12779 5.065859 GGGGTCCTTTTTGACAATGTTTTTG 59.934 40.000 0.00 0.00 36.97 2.44
5762 12780 5.189928 GGGGTCCTTTTTGACAATGTTTTT 58.810 37.500 0.00 0.00 36.97 1.94
5763 12781 4.384757 GGGGGTCCTTTTTGACAATGTTTT 60.385 41.667 0.00 0.00 36.97 2.43
5764 12782 3.135712 GGGGGTCCTTTTTGACAATGTTT 59.864 43.478 0.00 0.00 36.97 2.83
5765 12783 2.703536 GGGGGTCCTTTTTGACAATGTT 59.296 45.455 0.00 0.00 36.97 2.71
5766 12784 2.090775 AGGGGGTCCTTTTTGACAATGT 60.091 45.455 0.00 0.00 41.56 2.71
5767 12785 2.562738 GAGGGGGTCCTTTTTGACAATG 59.437 50.000 0.00 0.00 45.05 2.82
5768 12786 2.817839 CGAGGGGGTCCTTTTTGACAAT 60.818 50.000 0.00 0.00 45.05 2.71
5769 12787 1.477923 CGAGGGGGTCCTTTTTGACAA 60.478 52.381 0.00 0.00 45.05 3.18
5770 12788 0.109723 CGAGGGGGTCCTTTTTGACA 59.890 55.000 0.00 0.00 45.05 3.58
5771 12789 1.241990 GCGAGGGGGTCCTTTTTGAC 61.242 60.000 0.00 0.00 45.05 3.18
5772 12790 1.074248 GCGAGGGGGTCCTTTTTGA 59.926 57.895 0.00 0.00 45.05 2.69
5773 12791 0.326927 TAGCGAGGGGGTCCTTTTTG 59.673 55.000 0.00 0.00 45.05 2.44
5774 12792 0.618981 CTAGCGAGGGGGTCCTTTTT 59.381 55.000 0.00 0.00 45.05 1.94
5775 12793 0.546988 ACTAGCGAGGGGGTCCTTTT 60.547 55.000 0.00 0.00 45.05 2.27
5776 12794 1.080538 ACTAGCGAGGGGGTCCTTT 59.919 57.895 0.00 0.00 45.05 3.11
5777 12795 1.686110 CACTAGCGAGGGGGTCCTT 60.686 63.158 0.00 0.00 45.05 3.36
5778 12796 3.680920 CCACTAGCGAGGGGGTCCT 62.681 68.421 7.34 0.00 43.43 3.85
5779 12797 3.155167 CCACTAGCGAGGGGGTCC 61.155 72.222 7.34 0.00 43.43 4.46
5873 12891 4.728102 TTATATCCCGCGCGGCCG 62.728 66.667 42.39 29.64 37.57 6.13
5874 12892 3.116531 GTTATATCCCGCGCGGCC 61.117 66.667 42.39 18.59 0.00 6.13
5875 12893 3.116531 GGTTATATCCCGCGCGGC 61.117 66.667 42.39 26.17 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.