Multiple sequence alignment - TraesCS5A01G516200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G516200 chr5A 100.000 3286 0 0 1 3286 679721153 679724438 0.000000e+00 6069.0
1 TraesCS5A01G516200 chr5A 80.180 111 20 2 1106 1215 535240004 535240113 7.560000e-12 82.4
2 TraesCS5A01G516200 chr4D 90.753 1979 107 41 552 2496 498906082 498908018 0.000000e+00 2571.0
3 TraesCS5A01G516200 chr4D 87.816 435 40 11 2723 3148 498908261 498908691 6.330000e-137 497.0
4 TraesCS5A01G516200 chr4D 91.304 184 13 1 38 218 498905435 498905618 7.040000e-62 248.0
5 TraesCS5A01G516200 chr4D 83.475 236 12 5 2494 2706 498908047 498908278 9.300000e-46 195.0
6 TraesCS5A01G516200 chr4B 89.080 1685 104 40 834 2496 641407549 641409175 0.000000e+00 2019.0
7 TraesCS5A01G516200 chr4B 93.640 283 9 5 524 799 641407270 641407550 6.560000e-112 414.0
8 TraesCS5A01G516200 chr4B 83.556 450 47 15 71 509 641406723 641407156 2.380000e-106 396.0
9 TraesCS5A01G516200 chr4B 90.310 258 16 2 2754 3002 641409566 641409823 2.440000e-86 329.0
10 TraesCS5A01G516200 chr4B 94.017 117 7 0 3083 3199 641409850 641409966 9.370000e-41 178.0
11 TraesCS5A01G516200 chr4B 81.818 231 10 11 2494 2701 641409204 641409425 7.290000e-37 165.0
12 TraesCS5A01G516200 chr4B 87.500 96 10 2 2586 2680 641409432 641409526 3.470000e-20 110.0
13 TraesCS5A01G516200 chr2A 79.188 197 29 8 1330 1517 94157941 94158134 3.440000e-25 126.0
14 TraesCS5A01G516200 chr1D 80.282 142 26 2 1073 1213 288545953 288546093 4.480000e-19 106.0
15 TraesCS5A01G516200 chr1B 80.282 142 26 2 1073 1213 389980247 389980387 4.480000e-19 106.0
16 TraesCS5A01G516200 chr7A 93.443 61 4 0 1158 1218 497776257 497776317 1.260000e-14 91.6
17 TraesCS5A01G516200 chr5D 81.081 111 19 2 1106 1215 421661772 421661881 1.620000e-13 87.9
18 TraesCS5A01G516200 chr7D 94.545 55 3 0 1164 1218 446919938 446919884 5.840000e-13 86.1
19 TraesCS5A01G516200 chr5B 80.180 111 20 2 1106 1215 508065144 508065253 7.560000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G516200 chr5A 679721153 679724438 3285 False 6069.000000 6069 100.000000 1 3286 1 chr5A.!!$F2 3285
1 TraesCS5A01G516200 chr4D 498905435 498908691 3256 False 877.750000 2571 88.337000 38 3148 4 chr4D.!!$F1 3110
2 TraesCS5A01G516200 chr4B 641406723 641409966 3243 False 515.857143 2019 88.560143 71 3199 7 chr4B.!!$F1 3128

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 392 0.104304 CGTCCCTCCCGGATTAGTTG 59.896 60.0 0.73 0.0 44.66 3.16 F
762 1207 0.256464 CCAATGCCAATGCCCCAAAT 59.744 50.0 0.00 0.0 36.33 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 2002 0.607217 CAGCAATGTGAGCCCTGTCA 60.607 55.0 0.0 0.0 0.00 3.58 R
2759 3461 0.447801 CTTTTCTTCCATCGTGGCCG 59.552 55.0 0.0 0.0 37.47 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.888594 CTATATATGGCGTGGTTCCGG 58.111 52.381 0.00 0.00 0.00 5.14
21 22 1.344065 ATATATGGCGTGGTTCCGGA 58.656 50.000 0.00 0.00 0.00 5.14
22 23 0.390124 TATATGGCGTGGTTCCGGAC 59.610 55.000 1.83 0.00 0.00 4.79
23 24 1.618876 ATATGGCGTGGTTCCGGACA 61.619 55.000 1.83 0.00 0.00 4.02
24 25 1.828461 TATGGCGTGGTTCCGGACAA 61.828 55.000 1.83 0.00 0.00 3.18
25 26 2.592287 GGCGTGGTTCCGGACAAA 60.592 61.111 1.83 0.00 0.00 2.83
26 27 2.188161 GGCGTGGTTCCGGACAAAA 61.188 57.895 1.83 0.00 0.00 2.44
27 28 1.009335 GCGTGGTTCCGGACAAAAC 60.009 57.895 1.83 0.00 0.00 2.43
28 29 1.716826 GCGTGGTTCCGGACAAAACA 61.717 55.000 1.83 0.00 0.00 2.83
29 30 0.948678 CGTGGTTCCGGACAAAACAT 59.051 50.000 1.83 0.00 0.00 2.71
30 31 2.144730 CGTGGTTCCGGACAAAACATA 58.855 47.619 1.83 0.00 0.00 2.29
31 32 2.745281 CGTGGTTCCGGACAAAACATAT 59.255 45.455 1.83 0.00 0.00 1.78
32 33 3.933955 CGTGGTTCCGGACAAAACATATA 59.066 43.478 1.83 0.00 0.00 0.86
33 34 4.201744 CGTGGTTCCGGACAAAACATATAC 60.202 45.833 1.83 0.00 0.00 1.47
34 35 4.939439 GTGGTTCCGGACAAAACATATACT 59.061 41.667 1.83 0.00 0.00 2.12
35 36 5.064325 GTGGTTCCGGACAAAACATATACTC 59.936 44.000 1.83 0.00 0.00 2.59
36 37 5.046159 TGGTTCCGGACAAAACATATACTCT 60.046 40.000 1.83 0.00 0.00 3.24
39 40 5.824429 TCCGGACAAAACATATACTCTACG 58.176 41.667 0.00 0.00 0.00 3.51
68 69 3.109547 GTGGACGATTGTCGCGCA 61.110 61.111 8.75 0.00 46.49 6.09
78 79 3.490759 GTCGCGCACTCACATGGG 61.491 66.667 8.75 0.00 35.70 4.00
101 102 1.818221 CGCGCCTATGTAGCCGTTTC 61.818 60.000 0.00 0.00 0.00 2.78
107 108 1.593006 CTATGTAGCCGTTTCTTGCCG 59.407 52.381 0.00 0.00 0.00 5.69
150 154 4.563337 TGATTATTCCCTCGTCGTGTAG 57.437 45.455 0.00 0.00 0.00 2.74
244 254 1.003851 CCACCGTACGTGCAATTAGG 58.996 55.000 15.21 0.00 41.53 2.69
278 290 1.674322 GCCACCGTACAATGCACCT 60.674 57.895 0.00 0.00 0.00 4.00
279 291 1.644786 GCCACCGTACAATGCACCTC 61.645 60.000 0.00 0.00 0.00 3.85
282 294 1.206132 CACCGTACAATGCACCTCCTA 59.794 52.381 0.00 0.00 0.00 2.94
284 296 2.158957 ACCGTACAATGCACCTCCTATG 60.159 50.000 0.00 0.00 0.00 2.23
300 312 6.013293 ACCTCCTATGATTTGGAAGCCTATAC 60.013 42.308 0.00 0.00 31.23 1.47
327 365 0.108898 GCATGCCGTTTTGCCATGTA 60.109 50.000 6.36 0.00 32.66 2.29
331 369 0.170339 GCCGTTTTGCCATGTACTCC 59.830 55.000 0.00 0.00 0.00 3.85
334 372 1.737793 CGTTTTGCCATGTACTCCCTC 59.262 52.381 0.00 0.00 0.00 4.30
335 373 2.092323 GTTTTGCCATGTACTCCCTCC 58.908 52.381 0.00 0.00 0.00 4.30
336 374 0.251916 TTTGCCATGTACTCCCTCCG 59.748 55.000 0.00 0.00 0.00 4.63
338 376 1.327690 TGCCATGTACTCCCTCCGTC 61.328 60.000 0.00 0.00 0.00 4.79
340 378 1.400530 CCATGTACTCCCTCCGTCCC 61.401 65.000 0.00 0.00 0.00 4.46
342 380 0.106116 ATGTACTCCCTCCGTCCCTC 60.106 60.000 0.00 0.00 0.00 4.30
343 381 1.455402 GTACTCCCTCCGTCCCTCC 60.455 68.421 0.00 0.00 0.00 4.30
344 382 2.698075 TACTCCCTCCGTCCCTCCC 61.698 68.421 0.00 0.00 0.00 4.30
352 390 4.272245 CGTCCCTCCCGGATTAGT 57.728 61.111 0.73 0.00 44.66 2.24
353 391 2.512973 CGTCCCTCCCGGATTAGTT 58.487 57.895 0.73 0.00 44.66 2.24
354 392 0.104304 CGTCCCTCCCGGATTAGTTG 59.896 60.000 0.73 0.00 44.66 3.16
355 393 1.201424 GTCCCTCCCGGATTAGTTGT 58.799 55.000 0.73 0.00 44.66 3.32
356 394 1.134491 GTCCCTCCCGGATTAGTTGTG 60.134 57.143 0.73 0.00 44.66 3.33
357 395 0.909623 CCCTCCCGGATTAGTTGTGT 59.090 55.000 0.73 0.00 0.00 3.72
358 396 1.280998 CCCTCCCGGATTAGTTGTGTT 59.719 52.381 0.73 0.00 0.00 3.32
359 397 2.290705 CCCTCCCGGATTAGTTGTGTTT 60.291 50.000 0.73 0.00 0.00 2.83
360 398 3.418047 CCTCCCGGATTAGTTGTGTTTT 58.582 45.455 0.73 0.00 0.00 2.43
361 399 4.566070 CCCTCCCGGATTAGTTGTGTTTTA 60.566 45.833 0.73 0.00 0.00 1.52
362 400 4.634443 CCTCCCGGATTAGTTGTGTTTTAG 59.366 45.833 0.73 0.00 0.00 1.85
363 401 5.231702 TCCCGGATTAGTTGTGTTTTAGT 57.768 39.130 0.73 0.00 0.00 2.24
364 402 4.998672 TCCCGGATTAGTTGTGTTTTAGTG 59.001 41.667 0.73 0.00 0.00 2.74
365 403 4.758165 CCCGGATTAGTTGTGTTTTAGTGT 59.242 41.667 0.73 0.00 0.00 3.55
366 404 5.106830 CCCGGATTAGTTGTGTTTTAGTGTC 60.107 44.000 0.73 0.00 0.00 3.67
367 405 5.467399 CCGGATTAGTTGTGTTTTAGTGTCA 59.533 40.000 0.00 0.00 0.00 3.58
368 406 6.347402 CCGGATTAGTTGTGTTTTAGTGTCAG 60.347 42.308 0.00 0.00 0.00 3.51
369 407 6.422701 CGGATTAGTTGTGTTTTAGTGTCAGA 59.577 38.462 0.00 0.00 0.00 3.27
370 408 7.117812 CGGATTAGTTGTGTTTTAGTGTCAGAT 59.882 37.037 0.00 0.00 0.00 2.90
371 409 8.230486 GGATTAGTTGTGTTTTAGTGTCAGATG 58.770 37.037 0.00 0.00 0.00 2.90
372 410 5.424121 AGTTGTGTTTTAGTGTCAGATGC 57.576 39.130 0.00 0.00 0.00 3.91
373 411 4.881273 AGTTGTGTTTTAGTGTCAGATGCA 59.119 37.500 0.00 0.00 0.00 3.96
374 412 5.532406 AGTTGTGTTTTAGTGTCAGATGCAT 59.468 36.000 0.00 0.00 0.00 3.96
375 413 5.611796 TGTGTTTTAGTGTCAGATGCATC 57.388 39.130 19.37 19.37 0.00 3.91
376 414 4.455533 TGTGTTTTAGTGTCAGATGCATCC 59.544 41.667 23.06 8.72 0.00 3.51
377 415 4.455533 GTGTTTTAGTGTCAGATGCATCCA 59.544 41.667 23.06 11.35 0.00 3.41
378 416 5.124457 GTGTTTTAGTGTCAGATGCATCCAT 59.876 40.000 23.06 2.49 0.00 3.41
379 417 6.316140 GTGTTTTAGTGTCAGATGCATCCATA 59.684 38.462 23.06 5.86 0.00 2.74
380 418 7.012704 GTGTTTTAGTGTCAGATGCATCCATAT 59.987 37.037 23.06 9.51 0.00 1.78
381 419 7.557358 TGTTTTAGTGTCAGATGCATCCATATT 59.443 33.333 23.06 7.97 0.00 1.28
411 449 9.227777 ACAAATCTATAACAGTTAACTTGGGAC 57.772 33.333 5.07 0.00 0.00 4.46
420 458 3.647590 AGTTAACTTGGGACGGAGGTAAA 59.352 43.478 1.12 0.00 30.29 2.01
422 460 2.556144 ACTTGGGACGGAGGTAAAAC 57.444 50.000 0.00 0.00 0.00 2.43
512 845 4.582240 ACGAGAGCTGTCATCATCATTCTA 59.418 41.667 11.90 0.00 0.00 2.10
534 966 2.622064 ACGTTTCCAAGAAGAGCACT 57.378 45.000 0.00 0.00 0.00 4.40
537 969 3.997021 ACGTTTCCAAGAAGAGCACTATG 59.003 43.478 0.00 0.00 0.00 2.23
564 997 0.684153 ATTTTGGCTCCGTCCCCATG 60.684 55.000 0.00 0.00 0.00 3.66
628 1065 5.163416 ACAAGCAAGCTCCAGTTTGTAATTT 60.163 36.000 12.14 0.00 38.32 1.82
671 1108 3.056328 GGAAACCGCAGTGGAGCC 61.056 66.667 7.13 0.78 42.00 4.70
672 1109 3.423154 GAAACCGCAGTGGAGCCG 61.423 66.667 7.13 0.00 42.00 5.52
673 1110 3.876589 GAAACCGCAGTGGAGCCGA 62.877 63.158 7.13 0.00 42.00 5.54
674 1111 3.469863 AAACCGCAGTGGAGCCGAA 62.470 57.895 7.13 0.00 42.00 4.30
686 1128 2.218603 GGAGCCGAAGAAGAAAACACA 58.781 47.619 0.00 0.00 0.00 3.72
762 1207 0.256464 CCAATGCCAATGCCCCAAAT 59.744 50.000 0.00 0.00 36.33 2.32
805 1250 2.836981 GCCTCCACATGCCTATCTATCT 59.163 50.000 0.00 0.00 0.00 1.98
806 1251 4.026744 GCCTCCACATGCCTATCTATCTA 58.973 47.826 0.00 0.00 0.00 1.98
808 1253 5.221422 GCCTCCACATGCCTATCTATCTATC 60.221 48.000 0.00 0.00 0.00 2.08
809 1254 5.896106 CCTCCACATGCCTATCTATCTATCA 59.104 44.000 0.00 0.00 0.00 2.15
810 1255 6.040729 CCTCCACATGCCTATCTATCTATCAG 59.959 46.154 0.00 0.00 0.00 2.90
811 1256 6.497640 TCCACATGCCTATCTATCTATCAGT 58.502 40.000 0.00 0.00 0.00 3.41
812 1257 6.379417 TCCACATGCCTATCTATCTATCAGTG 59.621 42.308 0.00 0.00 0.00 3.66
842 1287 4.242475 TGATTAGTGAAAGTAGCACCACG 58.758 43.478 0.00 0.00 36.95 4.94
854 1303 4.235762 ACCACGCTGCCGAACTGT 62.236 61.111 0.00 0.00 38.29 3.55
877 1326 3.260884 CCCTTTGCTGACCAGAGTAACTA 59.739 47.826 0.47 0.00 0.00 2.24
878 1327 4.499183 CCTTTGCTGACCAGAGTAACTAG 58.501 47.826 0.47 0.00 0.00 2.57
884 1333 3.288964 TGACCAGAGTAACTAGCTAGCC 58.711 50.000 20.91 8.94 0.00 3.93
922 1371 5.334414 GCACGATCTGCTCCCTATAAATTTG 60.334 44.000 0.00 0.00 43.33 2.32
926 1375 4.703897 TCTGCTCCCTATAAATTTGACCG 58.296 43.478 0.00 0.00 0.00 4.79
978 1427 3.747529 GGTTCGTCTACCTAGCTAGCTAG 59.252 52.174 35.39 35.39 44.07 3.42
1009 1461 2.187599 GACAGTGGTCATGGCGTTGC 62.188 60.000 0.00 0.00 43.73 4.17
1128 1580 2.202797 CAGGCGGAGGTGATCGTG 60.203 66.667 0.00 0.00 0.00 4.35
1225 1686 1.065551 GCTTCGTCAAGGTTTGCACTT 59.934 47.619 0.00 0.00 0.00 3.16
1226 1687 2.289547 GCTTCGTCAAGGTTTGCACTTA 59.710 45.455 0.00 0.00 0.00 2.24
1227 1688 3.607078 GCTTCGTCAAGGTTTGCACTTAG 60.607 47.826 0.00 0.00 0.00 2.18
1228 1689 1.871039 TCGTCAAGGTTTGCACTTAGC 59.129 47.619 0.00 0.00 45.96 3.09
1229 1690 1.873591 CGTCAAGGTTTGCACTTAGCT 59.126 47.619 0.00 0.00 45.94 3.32
1230 1691 2.349817 CGTCAAGGTTTGCACTTAGCTG 60.350 50.000 0.00 0.00 45.94 4.24
1231 1692 2.618709 GTCAAGGTTTGCACTTAGCTGT 59.381 45.455 0.00 0.00 45.94 4.40
1232 1693 2.618241 TCAAGGTTTGCACTTAGCTGTG 59.382 45.455 0.00 0.00 45.94 3.66
1233 1694 2.348411 AGGTTTGCACTTAGCTGTGT 57.652 45.000 0.00 0.00 45.94 3.72
1234 1695 3.485463 AGGTTTGCACTTAGCTGTGTA 57.515 42.857 0.00 0.00 45.94 2.90
1235 1696 4.021102 AGGTTTGCACTTAGCTGTGTAT 57.979 40.909 0.00 0.00 45.94 2.29
1236 1697 4.003648 AGGTTTGCACTTAGCTGTGTATC 58.996 43.478 0.00 0.00 45.94 2.24
1237 1698 3.181520 GGTTTGCACTTAGCTGTGTATCG 60.182 47.826 0.00 0.00 45.94 2.92
1303 1772 7.144722 TCCATTGAAAATGTCAGTGATGTAC 57.855 36.000 0.00 0.00 44.65 2.90
1320 1789 3.143728 TGTACTGACGAGCTGTTGACTA 58.856 45.455 0.00 0.00 0.00 2.59
1533 2002 1.003839 TCGTCCTGGTACGTACGGT 60.004 57.895 21.06 7.87 43.31 4.83
1538 2007 0.169672 CCTGGTACGTACGGTGACAG 59.830 60.000 21.06 19.41 35.03 3.51
1545 2014 1.080025 GTACGGTGACAGGGCTCAC 60.080 63.158 0.00 0.00 40.02 3.51
1553 2022 1.930908 GACAGGGCTCACATTGCTGC 61.931 60.000 0.00 0.00 0.00 5.25
1554 2023 2.362120 AGGGCTCACATTGCTGCC 60.362 61.111 0.00 6.61 44.22 4.85
1562 2045 0.034337 CACATTGCTGCCAGCCTTTT 59.966 50.000 15.29 0.00 41.51 2.27
1728 2230 0.807667 CATCTCACGGAAGCCTTCGG 60.808 60.000 10.16 10.16 36.23 4.30
1729 2231 1.258445 ATCTCACGGAAGCCTTCGGT 61.258 55.000 11.46 11.46 42.97 4.69
1741 2243 1.954927 CCTTCGGTAAGAATGGGCTC 58.045 55.000 0.00 0.00 38.34 4.70
1779 2281 1.067142 CACGCTTTCAGGTACCTAGCA 60.067 52.381 27.09 9.15 0.00 3.49
1780 2282 1.204941 ACGCTTTCAGGTACCTAGCAG 59.795 52.381 27.09 22.08 0.00 4.24
1781 2283 1.657822 GCTTTCAGGTACCTAGCAGC 58.342 55.000 24.37 21.11 0.00 5.25
1782 2284 1.744114 GCTTTCAGGTACCTAGCAGCC 60.744 57.143 24.37 9.82 0.00 4.85
1783 2285 0.909623 TTTCAGGTACCTAGCAGCCC 59.090 55.000 15.80 0.00 0.00 5.19
1784 2286 0.252513 TTCAGGTACCTAGCAGCCCA 60.253 55.000 15.80 0.00 0.00 5.36
1785 2287 0.976073 TCAGGTACCTAGCAGCCCAC 60.976 60.000 15.80 0.00 0.00 4.61
1786 2288 0.978146 CAGGTACCTAGCAGCCCACT 60.978 60.000 15.80 0.00 0.00 4.00
1787 2289 0.688087 AGGTACCTAGCAGCCCACTC 60.688 60.000 14.41 0.00 0.00 3.51
1788 2290 0.976073 GGTACCTAGCAGCCCACTCA 60.976 60.000 4.06 0.00 0.00 3.41
1789 2291 0.902531 GTACCTAGCAGCCCACTCAA 59.097 55.000 0.00 0.00 0.00 3.02
1790 2292 1.278127 GTACCTAGCAGCCCACTCAAA 59.722 52.381 0.00 0.00 0.00 2.69
1791 2293 0.036875 ACCTAGCAGCCCACTCAAAC 59.963 55.000 0.00 0.00 0.00 2.93
1792 2294 0.036732 CCTAGCAGCCCACTCAAACA 59.963 55.000 0.00 0.00 0.00 2.83
1793 2295 1.160137 CTAGCAGCCCACTCAAACAC 58.840 55.000 0.00 0.00 0.00 3.32
1804 2318 1.152777 TCAAACACCCACAGCCCAG 60.153 57.895 0.00 0.00 0.00 4.45
1871 2385 5.349817 ACTCTCTGCGTTTCTCATTTGTATG 59.650 40.000 0.00 0.00 0.00 2.39
2286 2800 1.623811 ACTGCAGGGTCGTAAACTGAT 59.376 47.619 19.93 0.00 34.21 2.90
2288 2802 3.187700 CTGCAGGGTCGTAAACTGATAC 58.812 50.000 5.57 0.00 34.21 2.24
2296 2810 4.986659 GGTCGTAAACTGATACACACTTGT 59.013 41.667 0.00 0.00 40.02 3.16
2297 2811 5.464389 GGTCGTAAACTGATACACACTTGTT 59.536 40.000 0.00 0.00 37.15 2.83
2298 2812 6.352526 GTCGTAAACTGATACACACTTGTTG 58.647 40.000 0.00 0.00 37.15 3.33
2299 2813 5.050634 TCGTAAACTGATACACACTTGTTGC 60.051 40.000 0.00 0.00 37.15 4.17
2300 2814 5.277106 CGTAAACTGATACACACTTGTTGCA 60.277 40.000 0.00 0.00 37.15 4.08
2301 2815 4.552166 AACTGATACACACTTGTTGCAC 57.448 40.909 0.00 0.00 37.15 4.57
2305 2828 3.071747 TGATACACACTTGTTGCACCCTA 59.928 43.478 0.00 0.00 37.15 3.53
2310 2833 4.202419 ACACACTTGTTGCACCCTATCTTA 60.202 41.667 0.00 0.00 28.43 2.10
2340 2863 4.557205 ACACTTTACGTCACTCTGAATCC 58.443 43.478 0.00 0.00 0.00 3.01
2343 2866 2.913777 TACGTCACTCTGAATCCGTG 57.086 50.000 0.00 0.00 30.91 4.94
2351 2874 4.098044 TCACTCTGAATCCGTGGTATCTTC 59.902 45.833 0.00 0.00 0.00 2.87
2360 2883 0.252197 GTGGTATCTTCTTGGCCGGT 59.748 55.000 1.90 0.00 0.00 5.28
2369 2892 0.537188 TCTTGGCCGGTTTTGCAAAA 59.463 45.000 20.46 20.46 0.00 2.44
2389 2912 7.956558 GCAAAATGCAATGGAGTTATATATGC 58.043 34.615 0.00 0.00 44.26 3.14
2395 2918 6.313658 TGCAATGGAGTTATATATGCATCGAC 59.686 38.462 0.19 0.00 37.40 4.20
2397 2920 7.465111 GCAATGGAGTTATATATGCATCGACTG 60.465 40.741 0.19 0.00 32.80 3.51
2398 2921 6.834168 TGGAGTTATATATGCATCGACTGA 57.166 37.500 0.19 0.00 0.00 3.41
2399 2922 7.227049 TGGAGTTATATATGCATCGACTGAA 57.773 36.000 0.19 0.00 0.00 3.02
2400 2923 7.840931 TGGAGTTATATATGCATCGACTGAAT 58.159 34.615 0.19 0.00 0.00 2.57
2401 2924 8.314021 TGGAGTTATATATGCATCGACTGAATT 58.686 33.333 0.19 0.00 0.00 2.17
2402 2925 9.155975 GGAGTTATATATGCATCGACTGAATTT 57.844 33.333 0.19 0.00 0.00 1.82
2445 2968 1.800805 GTGAGAGATGTGTGGTGTGG 58.199 55.000 0.00 0.00 0.00 4.17
2446 2969 1.070758 GTGAGAGATGTGTGGTGTGGT 59.929 52.381 0.00 0.00 0.00 4.16
2447 2970 1.070601 TGAGAGATGTGTGGTGTGGTG 59.929 52.381 0.00 0.00 0.00 4.17
2448 2971 1.070758 GAGAGATGTGTGGTGTGGTGT 59.929 52.381 0.00 0.00 0.00 4.16
2449 2972 1.202687 AGAGATGTGTGGTGTGGTGTG 60.203 52.381 0.00 0.00 0.00 3.82
2450 2973 0.819259 AGATGTGTGGTGTGGTGTGC 60.819 55.000 0.00 0.00 0.00 4.57
2451 2974 2.116736 GATGTGTGGTGTGGTGTGCG 62.117 60.000 0.00 0.00 0.00 5.34
2458 2981 0.737715 GGTGTGGTGTGCGAGATCTC 60.738 60.000 13.05 13.05 0.00 2.75
2467 2990 1.478510 GTGCGAGATCTCCCTTTCTCA 59.521 52.381 17.13 1.64 38.63 3.27
2469 2992 1.202475 GCGAGATCTCCCTTTCTCACC 60.202 57.143 17.13 0.00 38.63 4.02
2516 3070 3.942748 TGGTTTAGTTATTCGGGTGATGC 59.057 43.478 0.00 0.00 0.00 3.91
2577 3135 2.847234 TGTCGAGCAACCCTGGGT 60.847 61.111 14.05 14.05 37.65 4.51
2614 3191 9.076596 CAAGAAAACAAGAAGAAACCTAACAAG 57.923 33.333 0.00 0.00 0.00 3.16
2617 3194 8.981724 AAAACAAGAAGAAACCTAACAAGAAC 57.018 30.769 0.00 0.00 0.00 3.01
2633 3210 0.526211 GAACCCGGGCAAAGATTCAC 59.474 55.000 24.08 0.00 0.00 3.18
2695 3393 9.048446 GGTAACAACAACAATACTCTAGTTTGA 57.952 33.333 10.15 0.00 0.00 2.69
2698 3396 8.732746 ACAACAACAATACTCTAGTTTGAGTT 57.267 30.769 2.44 10.39 44.01 3.01
2699 3397 9.174166 ACAACAACAATACTCTAGTTTGAGTTT 57.826 29.630 2.44 0.00 44.01 2.66
2700 3398 9.651718 CAACAACAATACTCTAGTTTGAGTTTC 57.348 33.333 2.44 0.00 44.01 2.78
2701 3399 9.614792 AACAACAATACTCTAGTTTGAGTTTCT 57.385 29.630 2.44 0.00 44.01 2.52
2702 3400 9.614792 ACAACAATACTCTAGTTTGAGTTTCTT 57.385 29.630 2.44 0.00 44.01 2.52
2707 3405 9.495572 AATACTCTAGTTTGAGTTTCTTTCTGG 57.504 33.333 2.44 0.00 44.01 3.86
2708 3406 6.890293 ACTCTAGTTTGAGTTTCTTTCTGGT 58.110 36.000 0.00 0.00 44.01 4.00
2709 3407 6.763610 ACTCTAGTTTGAGTTTCTTTCTGGTG 59.236 38.462 0.00 0.00 44.01 4.17
2710 3408 6.650120 TCTAGTTTGAGTTTCTTTCTGGTGT 58.350 36.000 0.00 0.00 0.00 4.16
2711 3409 5.819825 AGTTTGAGTTTCTTTCTGGTGTC 57.180 39.130 0.00 0.00 0.00 3.67
2712 3410 4.640647 AGTTTGAGTTTCTTTCTGGTGTCC 59.359 41.667 0.00 0.00 0.00 4.02
2713 3411 3.924114 TGAGTTTCTTTCTGGTGTCCA 57.076 42.857 0.00 0.00 0.00 4.02
2714 3412 4.229304 TGAGTTTCTTTCTGGTGTCCAA 57.771 40.909 0.00 0.00 30.80 3.53
2715 3413 4.594970 TGAGTTTCTTTCTGGTGTCCAAA 58.405 39.130 0.00 0.00 30.80 3.28
2716 3414 5.013547 TGAGTTTCTTTCTGGTGTCCAAAA 58.986 37.500 0.00 0.00 30.80 2.44
2717 3415 5.478679 TGAGTTTCTTTCTGGTGTCCAAAAA 59.521 36.000 0.00 0.00 30.80 1.94
2759 3461 9.047371 GTCCTCTTAATTATTAGAGCTGGAAAC 57.953 37.037 8.21 0.00 0.00 2.78
2770 3472 2.359354 TGGAAACGGCCACGATGG 60.359 61.111 2.24 0.00 44.60 3.51
2793 3495 7.617225 TGGAAGAAAAGCAATCAATCAATCAT 58.383 30.769 0.00 0.00 0.00 2.45
2818 3520 1.669760 TAACGGAGCCGGCAAAGTG 60.670 57.895 31.54 15.68 44.69 3.16
2835 3537 1.021390 GTGGGGATGAGCACAAGACG 61.021 60.000 0.00 0.00 0.00 4.18
2856 3558 1.742268 GGGCTAAGAAAGAAGCTGCTG 59.258 52.381 1.35 0.00 38.80 4.41
2959 3670 0.166814 GGAGACTCGTTGCATGTTGC 59.833 55.000 0.00 0.00 45.29 4.17
2969 3680 3.044059 GCATGTTGCAGTCGCCTCC 62.044 63.158 0.00 0.00 44.26 4.30
2972 3683 0.957395 ATGTTGCAGTCGCCTCCTTG 60.957 55.000 0.00 0.00 37.32 3.61
3022 3733 9.126151 TGTCTTTTGTGTGAATTAAGTTCCATA 57.874 29.630 0.00 0.00 35.91 2.74
3048 3760 3.073798 TCTTTCTTTATGGTGGCTGGTCA 59.926 43.478 0.00 0.00 0.00 4.02
3052 3764 5.186256 TCTTTATGGTGGCTGGTCAATAA 57.814 39.130 0.00 0.00 0.00 1.40
3054 3766 5.417580 TCTTTATGGTGGCTGGTCAATAAAC 59.582 40.000 0.00 0.00 0.00 2.01
3070 3782 7.329226 GGTCAATAAACCATGATTCAGTGTTTG 59.671 37.037 19.02 9.24 39.27 2.93
3073 3785 7.765695 ATAAACCATGATTCAGTGTTTGTCT 57.234 32.000 19.02 7.50 32.02 3.41
3149 3868 5.010314 GCAATTAGGCAGATCCAATTCATCA 59.990 40.000 0.00 0.00 37.29 3.07
3151 3870 2.941480 AGGCAGATCCAATTCATCACC 58.059 47.619 0.00 0.00 37.29 4.02
3158 3877 3.301794 TCCAATTCATCACCTCCATGG 57.698 47.619 4.97 4.97 42.93 3.66
3180 3899 4.035675 GGAATCACTTTGATCCAACGATCC 59.964 45.833 0.00 0.00 43.82 3.36
3199 3918 2.229062 TCCACGTTGCTCTAGAGTTCAG 59.771 50.000 20.75 12.46 0.00 3.02
3200 3919 1.989165 CACGTTGCTCTAGAGTTCAGC 59.011 52.381 20.75 11.88 0.00 4.26
3201 3920 1.613925 ACGTTGCTCTAGAGTTCAGCA 59.386 47.619 20.75 10.38 41.45 4.41
3202 3921 1.989165 CGTTGCTCTAGAGTTCAGCAC 59.011 52.381 20.75 6.82 42.85 4.40
3203 3922 2.352225 CGTTGCTCTAGAGTTCAGCACT 60.352 50.000 20.75 0.00 42.85 4.40
3204 3923 3.658709 GTTGCTCTAGAGTTCAGCACTT 58.341 45.455 20.75 0.00 42.85 3.16
3205 3924 3.309961 TGCTCTAGAGTTCAGCACTTG 57.690 47.619 20.75 0.00 38.25 3.16
3206 3925 1.999024 GCTCTAGAGTTCAGCACTTGC 59.001 52.381 20.75 0.00 35.01 4.01
3218 3937 2.050477 GCACTTGCGCATTTAACACT 57.950 45.000 12.75 0.00 0.00 3.55
3219 3938 1.715519 GCACTTGCGCATTTAACACTG 59.284 47.619 12.75 0.00 0.00 3.66
3220 3939 2.604373 GCACTTGCGCATTTAACACTGA 60.604 45.455 12.75 0.00 0.00 3.41
3221 3940 3.626977 CACTTGCGCATTTAACACTGAA 58.373 40.909 12.75 0.00 0.00 3.02
3222 3941 3.421888 CACTTGCGCATTTAACACTGAAC 59.578 43.478 12.75 0.00 0.00 3.18
3223 3942 3.066064 ACTTGCGCATTTAACACTGAACA 59.934 39.130 12.75 0.00 0.00 3.18
3224 3943 3.913548 TGCGCATTTAACACTGAACAT 57.086 38.095 5.66 0.00 0.00 2.71
3225 3944 4.235939 TGCGCATTTAACACTGAACATT 57.764 36.364 5.66 0.00 0.00 2.71
3226 3945 5.363979 TGCGCATTTAACACTGAACATTA 57.636 34.783 5.66 0.00 0.00 1.90
3227 3946 5.763088 TGCGCATTTAACACTGAACATTAA 58.237 33.333 5.66 0.00 0.00 1.40
3228 3947 5.627367 TGCGCATTTAACACTGAACATTAAC 59.373 36.000 5.66 0.00 0.00 2.01
3229 3948 5.219768 GCGCATTTAACACTGAACATTAACG 60.220 40.000 0.30 0.00 0.00 3.18
3230 3949 5.849081 CGCATTTAACACTGAACATTAACGT 59.151 36.000 0.00 0.00 0.00 3.99
3231 3950 6.183359 CGCATTTAACACTGAACATTAACGTG 60.183 38.462 0.00 0.00 0.00 4.49
3232 3951 6.853872 GCATTTAACACTGAACATTAACGTGA 59.146 34.615 0.00 0.00 0.00 4.35
3233 3952 7.537306 GCATTTAACACTGAACATTAACGTGAT 59.463 33.333 0.00 0.00 0.00 3.06
3236 3955 9.866936 TTTAACACTGAACATTAACGTGATAAC 57.133 29.630 0.00 0.00 0.00 1.89
3237 3956 6.476243 ACACTGAACATTAACGTGATAACC 57.524 37.500 0.00 0.00 0.00 2.85
3238 3957 6.228258 ACACTGAACATTAACGTGATAACCT 58.772 36.000 0.00 0.00 0.00 3.50
3239 3958 7.380536 ACACTGAACATTAACGTGATAACCTA 58.619 34.615 0.00 0.00 0.00 3.08
3240 3959 7.330208 ACACTGAACATTAACGTGATAACCTAC 59.670 37.037 0.00 0.00 0.00 3.18
3241 3960 6.529125 ACTGAACATTAACGTGATAACCTACG 59.471 38.462 0.00 0.00 45.19 3.51
3242 3961 5.289193 TGAACATTAACGTGATAACCTACGC 59.711 40.000 0.00 0.00 43.63 4.42
3243 3962 5.002464 ACATTAACGTGATAACCTACGCT 57.998 39.130 0.00 0.00 43.63 5.07
3244 3963 6.135290 ACATTAACGTGATAACCTACGCTA 57.865 37.500 0.00 0.00 43.63 4.26
3245 3964 6.563422 ACATTAACGTGATAACCTACGCTAA 58.437 36.000 0.00 0.00 43.63 3.09
3246 3965 6.473455 ACATTAACGTGATAACCTACGCTAAC 59.527 38.462 0.00 0.00 43.63 2.34
3247 3966 4.439305 AACGTGATAACCTACGCTAACA 57.561 40.909 0.00 0.00 43.63 2.41
3248 3967 4.025015 ACGTGATAACCTACGCTAACAG 57.975 45.455 0.00 0.00 43.63 3.16
3249 3968 2.787680 CGTGATAACCTACGCTAACAGC 59.212 50.000 0.00 0.00 38.02 4.40
3250 3969 3.488721 CGTGATAACCTACGCTAACAGCT 60.489 47.826 0.00 0.00 39.60 4.24
3251 3970 3.797256 GTGATAACCTACGCTAACAGCTG 59.203 47.826 13.48 13.48 39.60 4.24
3252 3971 2.288961 TAACCTACGCTAACAGCTGC 57.711 50.000 15.27 0.00 39.60 5.25
3253 3972 0.391263 AACCTACGCTAACAGCTGCC 60.391 55.000 15.27 0.00 39.60 4.85
3254 3973 1.521681 CCTACGCTAACAGCTGCCC 60.522 63.158 15.27 0.00 39.60 5.36
3255 3974 1.878522 CTACGCTAACAGCTGCCCG 60.879 63.158 15.27 13.48 39.60 6.13
3259 3978 3.127533 CTAACAGCTGCCCGCCAC 61.128 66.667 15.27 0.00 40.39 5.01
3260 3979 3.899981 CTAACAGCTGCCCGCCACA 62.900 63.158 15.27 0.00 40.39 4.17
3261 3980 3.266686 TAACAGCTGCCCGCCACAT 62.267 57.895 15.27 0.00 40.39 3.21
3265 3984 4.794648 GCTGCCCGCCACATGGTA 62.795 66.667 0.00 0.00 37.57 3.25
3266 3985 2.045438 CTGCCCGCCACATGGTAA 60.045 61.111 0.00 0.00 37.57 2.85
3267 3986 1.677300 CTGCCCGCCACATGGTAAA 60.677 57.895 0.00 0.00 37.57 2.01
3268 3987 1.656818 CTGCCCGCCACATGGTAAAG 61.657 60.000 0.00 0.00 37.57 1.85
3269 3988 1.377987 GCCCGCCACATGGTAAAGA 60.378 57.895 0.00 0.00 37.57 2.52
3270 3989 1.654023 GCCCGCCACATGGTAAAGAC 61.654 60.000 0.00 0.00 37.57 3.01
3271 3990 0.035439 CCCGCCACATGGTAAAGACT 60.035 55.000 0.00 0.00 37.57 3.24
3272 3991 1.086696 CCGCCACATGGTAAAGACTG 58.913 55.000 0.00 0.00 37.57 3.51
3273 3992 1.338674 CCGCCACATGGTAAAGACTGA 60.339 52.381 0.00 0.00 37.57 3.41
3274 3993 2.422597 CGCCACATGGTAAAGACTGAA 58.577 47.619 0.00 0.00 37.57 3.02
3275 3994 2.159627 CGCCACATGGTAAAGACTGAAC 59.840 50.000 0.00 0.00 37.57 3.18
3276 3995 3.412386 GCCACATGGTAAAGACTGAACT 58.588 45.455 0.00 0.00 37.57 3.01
3277 3996 3.189287 GCCACATGGTAAAGACTGAACTG 59.811 47.826 0.00 0.00 37.57 3.16
3278 3997 4.389374 CCACATGGTAAAGACTGAACTGT 58.611 43.478 0.00 0.00 0.00 3.55
3279 3998 4.821805 CCACATGGTAAAGACTGAACTGTT 59.178 41.667 0.00 0.00 0.00 3.16
3280 3999 5.299279 CCACATGGTAAAGACTGAACTGTTT 59.701 40.000 0.00 0.00 0.00 2.83
3281 4000 6.430451 CACATGGTAAAGACTGAACTGTTTC 58.570 40.000 0.00 0.00 0.00 2.78
3282 4001 5.531287 ACATGGTAAAGACTGAACTGTTTCC 59.469 40.000 0.00 0.00 0.00 3.13
3283 4002 5.105567 TGGTAAAGACTGAACTGTTTCCA 57.894 39.130 0.00 0.00 0.00 3.53
3284 4003 5.502079 TGGTAAAGACTGAACTGTTTCCAA 58.498 37.500 0.00 0.00 0.00 3.53
3285 4004 5.355910 TGGTAAAGACTGAACTGTTTCCAAC 59.644 40.000 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.494471 TCCGGAACCACGCCATATATAG 59.506 50.000 0.00 0.00 0.00 1.31
1 2 2.231964 GTCCGGAACCACGCCATATATA 59.768 50.000 5.23 0.00 0.00 0.86
2 3 1.001633 GTCCGGAACCACGCCATATAT 59.998 52.381 5.23 0.00 0.00 0.86
3 4 0.390124 GTCCGGAACCACGCCATATA 59.610 55.000 5.23 0.00 0.00 0.86
4 5 1.145377 GTCCGGAACCACGCCATAT 59.855 57.895 5.23 0.00 0.00 1.78
5 6 1.828461 TTGTCCGGAACCACGCCATA 61.828 55.000 5.23 0.00 0.00 2.74
6 7 2.684192 TTTGTCCGGAACCACGCCAT 62.684 55.000 5.23 0.00 0.00 4.40
7 8 2.888464 TTTTGTCCGGAACCACGCCA 62.888 55.000 5.23 0.00 0.00 5.69
8 9 2.188161 TTTTGTCCGGAACCACGCC 61.188 57.895 5.23 0.00 0.00 5.68
9 10 1.009335 GTTTTGTCCGGAACCACGC 60.009 57.895 5.23 0.00 0.00 5.34
10 11 0.948678 ATGTTTTGTCCGGAACCACG 59.051 50.000 5.23 0.00 0.00 4.94
11 12 4.939439 AGTATATGTTTTGTCCGGAACCAC 59.061 41.667 5.23 1.00 0.00 4.16
12 13 5.046159 AGAGTATATGTTTTGTCCGGAACCA 60.046 40.000 5.23 0.00 0.00 3.67
13 14 5.425630 AGAGTATATGTTTTGTCCGGAACC 58.574 41.667 5.23 0.00 0.00 3.62
14 15 6.197842 CGTAGAGTATATGTTTTGTCCGGAAC 59.802 42.308 5.23 0.06 0.00 3.62
15 16 6.127647 ACGTAGAGTATATGTTTTGTCCGGAA 60.128 38.462 5.23 0.00 0.00 4.30
16 17 5.357878 ACGTAGAGTATATGTTTTGTCCGGA 59.642 40.000 0.00 0.00 0.00 5.14
17 18 5.585390 ACGTAGAGTATATGTTTTGTCCGG 58.415 41.667 0.00 0.00 0.00 5.14
18 19 8.288208 AGATACGTAGAGTATATGTTTTGTCCG 58.712 37.037 0.08 0.00 45.47 4.79
19 20 9.609950 GAGATACGTAGAGTATATGTTTTGTCC 57.390 37.037 0.08 0.00 45.47 4.02
24 25 9.557061 TGACAGAGATACGTAGAGTATATGTTT 57.443 33.333 0.08 0.00 45.47 2.83
25 26 9.210329 CTGACAGAGATACGTAGAGTATATGTT 57.790 37.037 0.08 0.00 45.47 2.71
26 27 8.369424 ACTGACAGAGATACGTAGAGTATATGT 58.631 37.037 10.08 0.00 45.47 2.29
27 28 8.652463 CACTGACAGAGATACGTAGAGTATATG 58.348 40.741 10.08 0.00 45.47 1.78
28 29 7.820386 CCACTGACAGAGATACGTAGAGTATAT 59.180 40.741 10.08 0.00 45.47 0.86
29 30 7.015001 TCCACTGACAGAGATACGTAGAGTATA 59.985 40.741 10.08 0.00 45.47 1.47
30 31 8.165658 GTCCACTGACAGAGATACGTAGAGTAT 61.166 44.444 10.08 0.00 43.49 2.12
31 32 5.128335 TCCACTGACAGAGATACGTAGAGTA 59.872 44.000 10.08 0.00 40.03 2.59
32 33 4.081031 TCCACTGACAGAGATACGTAGAGT 60.081 45.833 10.08 0.00 0.00 3.24
33 34 4.271533 GTCCACTGACAGAGATACGTAGAG 59.728 50.000 10.08 0.00 41.37 2.43
34 35 4.190001 GTCCACTGACAGAGATACGTAGA 58.810 47.826 10.08 0.00 41.37 2.59
35 36 3.001431 CGTCCACTGACAGAGATACGTAG 59.999 52.174 10.08 0.00 41.85 3.51
36 37 2.934553 CGTCCACTGACAGAGATACGTA 59.065 50.000 10.08 0.00 41.85 3.57
39 40 4.142359 ACAATCGTCCACTGACAGAGATAC 60.142 45.833 10.08 2.68 41.85 2.24
57 58 0.247419 CATGTGAGTGCGCGACAATC 60.247 55.000 12.10 16.83 43.71 2.67
88 89 1.647346 CGGCAAGAAACGGCTACATA 58.353 50.000 0.00 0.00 0.00 2.29
150 154 1.011574 GCGTTTGTGACCGTGTGTC 60.012 57.895 0.00 0.00 44.72 3.67
157 161 2.482336 TGACATATGTGCGTTTGTGACC 59.518 45.455 14.43 0.00 0.00 4.02
244 254 1.370051 GGCGAAAACGGTGCAAGAC 60.370 57.895 0.00 0.00 0.00 3.01
251 261 1.955663 GTACGGTGGCGAAAACGGT 60.956 57.895 0.27 1.47 35.54 4.83
278 290 7.387265 TTGTATAGGCTTCCAAATCATAGGA 57.613 36.000 0.00 0.00 0.00 2.94
279 291 7.502226 TGTTTGTATAGGCTTCCAAATCATAGG 59.498 37.037 0.00 0.00 0.00 2.57
282 294 7.902920 ATGTTTGTATAGGCTTCCAAATCAT 57.097 32.000 0.00 4.43 0.00 2.45
284 296 6.476706 GCAATGTTTGTATAGGCTTCCAAATC 59.523 38.462 0.00 0.00 0.00 2.17
327 365 4.077180 GGGAGGGACGGAGGGAGT 62.077 72.222 0.00 0.00 0.00 3.85
340 378 5.121768 CACTAAAACACAACTAATCCGGGAG 59.878 44.000 0.00 0.00 0.00 4.30
342 380 4.758165 ACACTAAAACACAACTAATCCGGG 59.242 41.667 0.00 0.00 0.00 5.73
343 381 5.467399 TGACACTAAAACACAACTAATCCGG 59.533 40.000 0.00 0.00 0.00 5.14
344 382 6.422701 TCTGACACTAAAACACAACTAATCCG 59.577 38.462 0.00 0.00 0.00 4.18
345 383 7.724305 TCTGACACTAAAACACAACTAATCC 57.276 36.000 0.00 0.00 0.00 3.01
346 384 7.746475 GCATCTGACACTAAAACACAACTAATC 59.254 37.037 0.00 0.00 0.00 1.75
347 385 7.228507 TGCATCTGACACTAAAACACAACTAAT 59.771 33.333 0.00 0.00 0.00 1.73
348 386 6.540551 TGCATCTGACACTAAAACACAACTAA 59.459 34.615 0.00 0.00 0.00 2.24
351 389 5.168526 TGCATCTGACACTAAAACACAAC 57.831 39.130 0.00 0.00 0.00 3.32
352 390 5.048782 GGATGCATCTGACACTAAAACACAA 60.049 40.000 25.28 0.00 0.00 3.33
353 391 4.455533 GGATGCATCTGACACTAAAACACA 59.544 41.667 25.28 0.00 0.00 3.72
354 392 4.455533 TGGATGCATCTGACACTAAAACAC 59.544 41.667 25.28 4.91 0.00 3.32
355 393 4.650734 TGGATGCATCTGACACTAAAACA 58.349 39.130 25.28 8.07 0.00 2.83
356 394 5.824904 ATGGATGCATCTGACACTAAAAC 57.175 39.130 25.28 5.53 0.00 2.43
357 395 8.523915 AAATATGGATGCATCTGACACTAAAA 57.476 30.769 25.28 1.80 0.00 1.52
358 396 9.276590 CTAAATATGGATGCATCTGACACTAAA 57.723 33.333 25.28 4.46 0.00 1.85
359 397 8.650490 TCTAAATATGGATGCATCTGACACTAA 58.350 33.333 25.28 6.14 0.00 2.24
360 398 8.090831 GTCTAAATATGGATGCATCTGACACTA 58.909 37.037 25.28 10.33 0.00 2.74
361 399 6.933521 GTCTAAATATGGATGCATCTGACACT 59.066 38.462 25.28 9.77 0.00 3.55
362 400 6.707608 TGTCTAAATATGGATGCATCTGACAC 59.292 38.462 25.28 9.59 0.00 3.67
363 401 6.829849 TGTCTAAATATGGATGCATCTGACA 58.170 36.000 25.28 15.62 0.00 3.58
364 402 7.734924 TTGTCTAAATATGGATGCATCTGAC 57.265 36.000 25.28 17.91 0.00 3.51
365 403 8.929260 ATTTGTCTAAATATGGATGCATCTGA 57.071 30.769 25.28 13.31 34.81 3.27
366 404 9.011095 AGATTTGTCTAAATATGGATGCATCTG 57.989 33.333 25.28 6.84 36.66 2.90
396 434 1.346722 CCTCCGTCCCAAGTTAACTGT 59.653 52.381 9.34 0.00 0.00 3.55
398 436 1.725803 ACCTCCGTCCCAAGTTAACT 58.274 50.000 1.12 1.12 0.00 2.24
399 437 3.683365 TTACCTCCGTCCCAAGTTAAC 57.317 47.619 0.00 0.00 0.00 2.01
404 442 2.853235 AGTTTTACCTCCGTCCCAAG 57.147 50.000 0.00 0.00 0.00 3.61
411 449 5.933463 TGGTACAAATGTAGTTTTACCTCCG 59.067 40.000 8.35 0.00 36.05 4.63
512 845 4.642429 AGTGCTCTTCTTGGAAACGTTAT 58.358 39.130 0.00 0.00 0.00 1.89
534 966 1.830477 GAGCCAAAATGCCCAACCATA 59.170 47.619 0.00 0.00 0.00 2.74
537 969 1.296392 GGAGCCAAAATGCCCAACC 59.704 57.895 0.00 0.00 0.00 3.77
564 997 3.134127 GGTTGCCCGCTGTGATCC 61.134 66.667 0.00 0.00 0.00 3.36
671 1108 3.003378 GGGGTCTTGTGTTTTCTTCTTCG 59.997 47.826 0.00 0.00 0.00 3.79
672 1109 4.036852 CAGGGGTCTTGTGTTTTCTTCTTC 59.963 45.833 0.00 0.00 0.00 2.87
673 1110 3.954258 CAGGGGTCTTGTGTTTTCTTCTT 59.046 43.478 0.00 0.00 0.00 2.52
674 1111 3.202151 TCAGGGGTCTTGTGTTTTCTTCT 59.798 43.478 0.00 0.00 0.00 2.85
686 1128 1.000896 CCGGCAAATCAGGGGTCTT 60.001 57.895 0.00 0.00 0.00 3.01
762 1207 1.519408 GCTAGAAACACGGCCAAGAA 58.481 50.000 2.24 0.00 0.00 2.52
808 1253 8.092521 ACTTTCACTAATCAAATCAGTCACTG 57.907 34.615 0.00 0.00 0.00 3.66
809 1254 9.429359 CTACTTTCACTAATCAAATCAGTCACT 57.571 33.333 0.00 0.00 0.00 3.41
810 1255 8.171840 GCTACTTTCACTAATCAAATCAGTCAC 58.828 37.037 0.00 0.00 0.00 3.67
811 1256 7.877612 TGCTACTTTCACTAATCAAATCAGTCA 59.122 33.333 0.00 0.00 0.00 3.41
812 1257 8.171840 GTGCTACTTTCACTAATCAAATCAGTC 58.828 37.037 0.00 0.00 0.00 3.51
818 1263 5.178623 CGTGGTGCTACTTTCACTAATCAAA 59.821 40.000 0.00 0.00 34.97 2.69
842 1287 1.600916 AAAGGGACAGTTCGGCAGC 60.601 57.895 0.00 0.00 0.00 5.25
854 1303 2.024176 TACTCTGGTCAGCAAAGGGA 57.976 50.000 0.00 0.00 0.00 4.20
926 1375 1.797537 GTCAAAATCTGCACGGCGC 60.798 57.895 6.90 0.00 42.89 6.53
1128 1580 3.827898 CTGCCGACCTCGTCCCTC 61.828 72.222 0.00 0.00 37.74 4.30
1225 1686 2.879026 CTGGCTAGTCGATACACAGCTA 59.121 50.000 0.00 0.00 36.61 3.32
1226 1687 1.678627 CTGGCTAGTCGATACACAGCT 59.321 52.381 0.00 0.00 36.61 4.24
1227 1688 1.405821 ACTGGCTAGTCGATACACAGC 59.594 52.381 0.00 0.00 36.00 4.40
1228 1689 4.515567 TCATACTGGCTAGTCGATACACAG 59.484 45.833 5.78 0.00 38.36 3.66
1229 1690 4.457466 TCATACTGGCTAGTCGATACACA 58.543 43.478 5.78 0.00 38.36 3.72
1230 1691 5.434352 TTCATACTGGCTAGTCGATACAC 57.566 43.478 5.78 0.00 38.36 2.90
1231 1692 6.447162 CATTTCATACTGGCTAGTCGATACA 58.553 40.000 5.78 0.00 38.36 2.29
1232 1693 5.346281 GCATTTCATACTGGCTAGTCGATAC 59.654 44.000 5.78 0.00 38.36 2.24
1233 1694 5.010617 TGCATTTCATACTGGCTAGTCGATA 59.989 40.000 5.78 0.58 38.36 2.92
1234 1695 4.202253 TGCATTTCATACTGGCTAGTCGAT 60.202 41.667 5.78 0.00 38.36 3.59
1235 1696 3.132111 TGCATTTCATACTGGCTAGTCGA 59.868 43.478 5.78 1.65 38.36 4.20
1236 1697 3.457234 TGCATTTCATACTGGCTAGTCG 58.543 45.455 5.78 0.00 38.36 4.18
1237 1698 3.812053 CCTGCATTTCATACTGGCTAGTC 59.188 47.826 5.78 0.00 38.36 2.59
1303 1772 2.094494 ACCATAGTCAACAGCTCGTCAG 60.094 50.000 0.00 0.00 0.00 3.51
1309 1778 2.037251 ACACGAACCATAGTCAACAGCT 59.963 45.455 0.00 0.00 0.00 4.24
1312 1781 3.554129 CCTGACACGAACCATAGTCAACA 60.554 47.826 0.00 0.00 40.14 3.33
1320 1789 1.003355 CAGCCCTGACACGAACCAT 60.003 57.895 0.00 0.00 0.00 3.55
1348 1817 2.653702 GTCGAGTCCAGCAGCACT 59.346 61.111 0.00 0.00 0.00 4.40
1533 2002 0.607217 CAGCAATGTGAGCCCTGTCA 60.607 55.000 0.00 0.00 0.00 3.58
1538 2007 2.677524 TGGCAGCAATGTGAGCCC 60.678 61.111 9.47 0.00 46.45 5.19
1545 2014 3.618171 AAAAAGGCTGGCAGCAATG 57.382 47.368 37.49 3.80 44.75 2.82
1576 2078 1.958715 TCGCCATTGACGGTGTGTG 60.959 57.895 0.00 0.00 37.81 3.82
1711 2213 2.970639 CCGAAGGCTTCCGTGAGA 59.029 61.111 20.97 0.00 46.14 3.27
1741 2243 0.618680 TGACCATGTCCTCCTGGGAG 60.619 60.000 9.53 9.53 46.10 4.30
1779 2281 1.152756 GTGGGTGTTTGAGTGGGCT 60.153 57.895 0.00 0.00 0.00 5.19
1780 2282 1.454847 TGTGGGTGTTTGAGTGGGC 60.455 57.895 0.00 0.00 0.00 5.36
1781 2283 1.455383 GCTGTGGGTGTTTGAGTGGG 61.455 60.000 0.00 0.00 0.00 4.61
1782 2284 1.455383 GGCTGTGGGTGTTTGAGTGG 61.455 60.000 0.00 0.00 0.00 4.00
1783 2285 1.455383 GGGCTGTGGGTGTTTGAGTG 61.455 60.000 0.00 0.00 0.00 3.51
1784 2286 1.152756 GGGCTGTGGGTGTTTGAGT 60.153 57.895 0.00 0.00 0.00 3.41
1785 2287 1.152777 TGGGCTGTGGGTGTTTGAG 60.153 57.895 0.00 0.00 0.00 3.02
1786 2288 1.152777 CTGGGCTGTGGGTGTTTGA 60.153 57.895 0.00 0.00 0.00 2.69
1787 2289 2.859981 GCTGGGCTGTGGGTGTTTG 61.860 63.158 0.00 0.00 0.00 2.93
1788 2290 2.521708 GCTGGGCTGTGGGTGTTT 60.522 61.111 0.00 0.00 0.00 2.83
1789 2291 3.497884 GAGCTGGGCTGTGGGTGTT 62.498 63.158 0.00 0.00 39.88 3.32
1790 2292 3.958860 GAGCTGGGCTGTGGGTGT 61.959 66.667 0.00 0.00 39.88 4.16
1791 2293 3.957586 TGAGCTGGGCTGTGGGTG 61.958 66.667 0.00 0.00 39.88 4.61
1792 2294 3.958860 GTGAGCTGGGCTGTGGGT 61.959 66.667 0.00 0.00 39.88 4.51
1793 2295 3.278072 ATGTGAGCTGGGCTGTGGG 62.278 63.158 0.00 0.00 39.88 4.61
1845 2359 5.297547 ACAAATGAGAAACGCAGAGAGTAA 58.702 37.500 0.00 0.00 0.00 2.24
1846 2360 4.883083 ACAAATGAGAAACGCAGAGAGTA 58.117 39.130 0.00 0.00 0.00 2.59
1847 2361 3.733337 ACAAATGAGAAACGCAGAGAGT 58.267 40.909 0.00 0.00 0.00 3.24
2024 2538 2.672651 TCCATGGGCACTGCGTTG 60.673 61.111 13.02 0.00 0.00 4.10
2286 2800 3.326588 AGATAGGGTGCAACAAGTGTGTA 59.673 43.478 3.06 0.00 39.98 2.90
2288 2802 2.783135 AGATAGGGTGCAACAAGTGTG 58.217 47.619 3.06 0.00 39.98 3.82
2296 2810 3.838244 AGCGAATAAGATAGGGTGCAA 57.162 42.857 0.00 0.00 0.00 4.08
2297 2811 3.838244 AAGCGAATAAGATAGGGTGCA 57.162 42.857 0.00 0.00 0.00 4.57
2298 2812 4.448060 GTGTAAGCGAATAAGATAGGGTGC 59.552 45.833 0.00 0.00 0.00 5.01
2299 2813 5.844004 AGTGTAAGCGAATAAGATAGGGTG 58.156 41.667 0.00 0.00 0.00 4.61
2300 2814 6.481434 AAGTGTAAGCGAATAAGATAGGGT 57.519 37.500 0.00 0.00 0.00 4.34
2301 2815 7.114529 CGTAAAGTGTAAGCGAATAAGATAGGG 59.885 40.741 0.00 0.00 0.00 3.53
2305 2828 7.008992 GTGACGTAAAGTGTAAGCGAATAAGAT 59.991 37.037 0.00 0.00 0.00 2.40
2310 2833 4.553323 AGTGACGTAAAGTGTAAGCGAAT 58.447 39.130 0.00 0.00 0.00 3.34
2340 2863 0.810031 CCGGCCAAGAAGATACCACG 60.810 60.000 2.24 0.00 0.00 4.94
2343 2866 2.124277 AAACCGGCCAAGAAGATACC 57.876 50.000 0.00 0.00 0.00 2.73
2351 2874 1.263752 CATTTTGCAAAACCGGCCAAG 59.736 47.619 26.05 6.03 0.00 3.61
2374 2897 7.410120 TCAGTCGATGCATATATAACTCCAT 57.590 36.000 0.00 0.00 0.00 3.41
2385 2908 4.940654 TGTCCAAAATTCAGTCGATGCATA 59.059 37.500 0.00 0.00 0.00 3.14
2389 2912 3.186409 ACGTGTCCAAAATTCAGTCGATG 59.814 43.478 0.00 0.00 0.00 3.84
2392 2915 3.491639 TGTACGTGTCCAAAATTCAGTCG 59.508 43.478 0.00 0.00 0.00 4.18
2395 2918 4.616802 GCAATGTACGTGTCCAAAATTCAG 59.383 41.667 0.00 0.00 0.00 3.02
2397 2920 3.602062 CGCAATGTACGTGTCCAAAATTC 59.398 43.478 0.00 0.00 0.00 2.17
2398 2921 3.003897 ACGCAATGTACGTGTCCAAAATT 59.996 39.130 0.00 0.00 43.23 1.82
2399 2922 2.550606 ACGCAATGTACGTGTCCAAAAT 59.449 40.909 0.00 0.00 43.23 1.82
2400 2923 1.941294 ACGCAATGTACGTGTCCAAAA 59.059 42.857 0.00 0.00 43.23 2.44
2401 2924 1.584175 ACGCAATGTACGTGTCCAAA 58.416 45.000 0.00 0.00 43.23 3.28
2402 2925 1.261885 CAACGCAATGTACGTGTCCAA 59.738 47.619 0.00 0.00 44.30 3.53
2403 2926 0.862490 CAACGCAATGTACGTGTCCA 59.138 50.000 0.00 0.00 44.30 4.02
2445 2968 1.205893 AGAAAGGGAGATCTCGCACAC 59.794 52.381 33.61 24.13 43.96 3.82
2446 2969 1.478510 GAGAAAGGGAGATCTCGCACA 59.521 52.381 33.61 0.00 43.96 4.57
2447 2970 1.478510 TGAGAAAGGGAGATCTCGCAC 59.521 52.381 33.61 24.69 44.01 5.34
2448 2971 1.852633 TGAGAAAGGGAGATCTCGCA 58.147 50.000 33.61 15.06 44.01 5.10
2449 2972 2.217429 GTGAGAAAGGGAGATCTCGC 57.783 55.000 27.65 27.65 44.01 5.03
2450 2973 2.100584 CAGGTGAGAAAGGGAGATCTCG 59.899 54.545 16.46 0.00 44.01 4.04
2451 2974 3.370104 TCAGGTGAGAAAGGGAGATCTC 58.630 50.000 14.75 14.75 41.95 2.75
2458 2981 4.471386 TCTTTCCTATCAGGTGAGAAAGGG 59.529 45.833 15.08 0.00 42.26 3.95
2496 3050 3.619929 ACGCATCACCCGAATAACTAAAC 59.380 43.478 0.00 0.00 0.00 2.01
2516 3070 3.630148 GCCGATCCATGCGTCACG 61.630 66.667 0.00 0.00 0.00 4.35
2537 3095 3.173668 TGACAAAAGCACGTCTACAGT 57.826 42.857 0.00 0.00 33.18 3.55
2577 3135 5.686753 TCTTGTTTTCTTGTTAGGTAGGCA 58.313 37.500 0.00 0.00 0.00 4.75
2614 3191 0.526211 GTGAATCTTTGCCCGGGTTC 59.474 55.000 24.63 17.00 0.00 3.62
2617 3194 1.304052 TGGTGAATCTTTGCCCGGG 60.304 57.895 19.09 19.09 0.00 5.73
2633 3210 3.243401 GGTTCAGCAAACACTAAACCTGG 60.243 47.826 0.00 0.00 39.81 4.45
2685 3383 6.763610 ACACCAGAAAGAAACTCAAACTAGAG 59.236 38.462 0.00 0.00 41.44 2.43
2686 3384 6.650120 ACACCAGAAAGAAACTCAAACTAGA 58.350 36.000 0.00 0.00 0.00 2.43
2687 3385 6.017852 GGACACCAGAAAGAAACTCAAACTAG 60.018 42.308 0.00 0.00 0.00 2.57
2688 3386 5.820947 GGACACCAGAAAGAAACTCAAACTA 59.179 40.000 0.00 0.00 0.00 2.24
2689 3387 4.640647 GGACACCAGAAAGAAACTCAAACT 59.359 41.667 0.00 0.00 0.00 2.66
2690 3388 4.398044 TGGACACCAGAAAGAAACTCAAAC 59.602 41.667 0.00 0.00 0.00 2.93
2691 3389 4.594970 TGGACACCAGAAAGAAACTCAAA 58.405 39.130 0.00 0.00 0.00 2.69
2692 3390 4.229304 TGGACACCAGAAAGAAACTCAA 57.771 40.909 0.00 0.00 0.00 3.02
2693 3391 3.924114 TGGACACCAGAAAGAAACTCA 57.076 42.857 0.00 0.00 0.00 3.41
2694 3392 5.576447 TTTTGGACACCAGAAAGAAACTC 57.424 39.130 0.00 0.00 33.81 3.01
2695 3393 5.993748 TTTTTGGACACCAGAAAGAAACT 57.006 34.783 0.00 0.00 33.59 2.66
2736 3434 7.307455 GCCGTTTCCAGCTCTAATAATTAAGAG 60.307 40.741 9.09 9.09 0.00 2.85
2747 3445 1.295423 GTGGCCGTTTCCAGCTCTA 59.705 57.895 0.00 0.00 36.67 2.43
2759 3461 0.447801 CTTTTCTTCCATCGTGGCCG 59.552 55.000 0.00 0.00 37.47 6.13
2770 3472 7.980099 AGGATGATTGATTGATTGCTTTTCTTC 59.020 33.333 0.00 0.00 0.00 2.87
2793 3495 1.294138 CCGGCTCCGTTACAAAGGA 59.706 57.895 7.59 0.00 37.81 3.36
2818 3520 1.450312 CCGTCTTGTGCTCATCCCC 60.450 63.158 0.00 0.00 0.00 4.81
2835 3537 1.098869 GCAGCTTCTTTCTTAGCCCC 58.901 55.000 0.00 0.00 38.14 5.80
2856 3558 0.842635 AGAACTGGCTCCATCCATCC 59.157 55.000 0.00 0.00 35.22 3.51
2959 3670 2.232298 GAGGACCAAGGAGGCGACTG 62.232 65.000 0.00 0.00 44.43 3.51
2969 3680 3.691609 GGACTTGCTTAATGAGGACCAAG 59.308 47.826 0.00 0.00 36.62 3.61
2972 3683 3.350219 TGGACTTGCTTAATGAGGACC 57.650 47.619 0.00 0.00 0.00 4.46
3022 3733 4.952335 CCAGCCACCATAAAGAAAGAAGAT 59.048 41.667 0.00 0.00 0.00 2.40
3025 3736 4.079253 GACCAGCCACCATAAAGAAAGAA 58.921 43.478 0.00 0.00 0.00 2.52
3048 3760 8.181904 AGACAAACACTGAATCATGGTTTATT 57.818 30.769 10.61 3.74 31.10 1.40
3052 3764 7.425606 GTTTAGACAAACACTGAATCATGGTT 58.574 34.615 0.00 0.00 43.02 3.67
3070 3782 9.897744 TCACTGAATCATGATTTTTGTTTAGAC 57.102 29.630 21.57 6.02 0.00 2.59
3125 3844 4.924305 TGAATTGGATCTGCCTAATTGC 57.076 40.909 0.00 0.00 37.63 3.56
3149 3868 4.530875 GATCAAAGTGATTCCATGGAGGT 58.469 43.478 15.53 8.03 37.20 3.85
3151 3870 4.529897 TGGATCAAAGTGATTCCATGGAG 58.470 43.478 15.53 0.37 37.20 3.86
3180 3899 1.989165 GCTGAACTCTAGAGCAACGTG 59.011 52.381 19.97 6.67 32.70 4.49
3199 3918 1.715519 CAGTGTTAAATGCGCAAGTGC 59.284 47.619 17.11 4.69 41.68 4.40
3200 3919 3.266541 TCAGTGTTAAATGCGCAAGTG 57.733 42.857 17.11 10.34 41.68 3.16
3201 3920 3.066064 TGTTCAGTGTTAAATGCGCAAGT 59.934 39.130 17.11 7.98 41.68 3.16
3202 3921 3.626977 TGTTCAGTGTTAAATGCGCAAG 58.373 40.909 17.11 0.00 43.44 4.01
3203 3922 3.699779 TGTTCAGTGTTAAATGCGCAA 57.300 38.095 17.11 0.00 0.00 4.85
3204 3923 3.913548 ATGTTCAGTGTTAAATGCGCA 57.086 38.095 14.96 14.96 0.00 6.09
3205 3924 5.219768 CGTTAATGTTCAGTGTTAAATGCGC 60.220 40.000 0.00 0.00 0.00 6.09
3206 3925 5.849081 ACGTTAATGTTCAGTGTTAAATGCG 59.151 36.000 0.00 0.00 0.00 4.73
3207 3926 6.853872 TCACGTTAATGTTCAGTGTTAAATGC 59.146 34.615 0.00 0.00 34.71 3.56
3208 3927 8.948853 ATCACGTTAATGTTCAGTGTTAAATG 57.051 30.769 0.00 0.00 34.71 2.32
3210 3929 9.866936 GTTATCACGTTAATGTTCAGTGTTAAA 57.133 29.630 0.00 0.00 32.41 1.52
3211 3930 8.497554 GGTTATCACGTTAATGTTCAGTGTTAA 58.502 33.333 0.00 0.00 34.71 2.01
3212 3931 7.874016 AGGTTATCACGTTAATGTTCAGTGTTA 59.126 33.333 0.00 0.00 34.71 2.41
3213 3932 6.708949 AGGTTATCACGTTAATGTTCAGTGTT 59.291 34.615 0.00 0.00 34.71 3.32
3214 3933 6.228258 AGGTTATCACGTTAATGTTCAGTGT 58.772 36.000 0.00 0.00 34.71 3.55
3215 3934 6.721571 AGGTTATCACGTTAATGTTCAGTG 57.278 37.500 0.00 0.00 0.00 3.66
3216 3935 6.529125 CGTAGGTTATCACGTTAATGTTCAGT 59.471 38.462 0.00 0.00 33.56 3.41
3217 3936 6.507456 GCGTAGGTTATCACGTTAATGTTCAG 60.507 42.308 0.00 0.00 40.25 3.02
3218 3937 5.289193 GCGTAGGTTATCACGTTAATGTTCA 59.711 40.000 0.00 0.00 40.25 3.18
3219 3938 5.517770 AGCGTAGGTTATCACGTTAATGTTC 59.482 40.000 0.00 0.00 40.25 3.18
3220 3939 5.413499 AGCGTAGGTTATCACGTTAATGTT 58.587 37.500 0.00 0.00 40.25 2.71
3221 3940 5.002464 AGCGTAGGTTATCACGTTAATGT 57.998 39.130 0.00 0.00 40.25 2.71
3222 3941 6.473131 TGTTAGCGTAGGTTATCACGTTAATG 59.527 38.462 6.68 0.00 42.79 1.90
3223 3942 6.563422 TGTTAGCGTAGGTTATCACGTTAAT 58.437 36.000 6.68 0.00 42.79 1.40
3224 3943 5.948588 TGTTAGCGTAGGTTATCACGTTAA 58.051 37.500 0.00 0.00 40.12 2.01
3225 3944 5.559427 TGTTAGCGTAGGTTATCACGTTA 57.441 39.130 0.00 0.00 40.25 3.18
3226 3945 4.418392 CTGTTAGCGTAGGTTATCACGTT 58.582 43.478 0.00 0.00 40.25 3.99
3227 3946 3.733077 GCTGTTAGCGTAGGTTATCACGT 60.733 47.826 0.00 0.00 40.25 4.49
3228 3947 2.787680 GCTGTTAGCGTAGGTTATCACG 59.212 50.000 0.00 0.00 40.68 4.35
3249 3968 1.656818 CTTTACCATGTGGCGGGCAG 61.657 60.000 3.75 0.00 39.32 4.85
3250 3969 1.677300 CTTTACCATGTGGCGGGCA 60.677 57.895 0.00 0.00 39.32 5.36
3251 3970 1.377987 TCTTTACCATGTGGCGGGC 60.378 57.895 0.00 0.00 39.32 6.13
3252 3971 0.035439 AGTCTTTACCATGTGGCGGG 60.035 55.000 0.00 0.00 39.32 6.13
3253 3972 1.086696 CAGTCTTTACCATGTGGCGG 58.913 55.000 0.00 0.00 39.32 6.13
3254 3973 2.093306 TCAGTCTTTACCATGTGGCG 57.907 50.000 0.00 0.00 39.32 5.69
3255 3974 3.189287 CAGTTCAGTCTTTACCATGTGGC 59.811 47.826 0.00 0.00 39.32 5.01
3256 3975 4.389374 ACAGTTCAGTCTTTACCATGTGG 58.611 43.478 0.00 0.00 42.17 4.17
3257 3976 6.377327 AAACAGTTCAGTCTTTACCATGTG 57.623 37.500 0.00 0.00 0.00 3.21
3258 3977 5.531287 GGAAACAGTTCAGTCTTTACCATGT 59.469 40.000 0.00 0.00 35.25 3.21
3259 3978 5.530915 TGGAAACAGTTCAGTCTTTACCATG 59.469 40.000 0.00 0.00 35.25 3.66
3260 3979 5.690865 TGGAAACAGTTCAGTCTTTACCAT 58.309 37.500 0.00 0.00 35.25 3.55
3261 3980 5.105567 TGGAAACAGTTCAGTCTTTACCA 57.894 39.130 0.00 0.00 35.25 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.