Multiple sequence alignment - TraesCS5A01G514800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G514800 chr5A 100.000 3791 0 0 1 3791 678232382 678228592 0.000000e+00 7001.0
1 TraesCS5A01G514800 chr4D 89.266 1472 78 36 2104 3535 497914847 497913416 0.000000e+00 1770.0
2 TraesCS5A01G514800 chr4D 84.203 1494 124 50 622 2065 497916362 497914931 0.000000e+00 1349.0
3 TraesCS5A01G514800 chr4D 88.000 225 19 7 1 224 497924323 497924106 3.760000e-65 259.0
4 TraesCS5A01G514800 chr4D 86.607 224 24 4 1 224 497917054 497916837 3.780000e-60 243.0
5 TraesCS5A01G514800 chr4D 80.159 126 14 8 3616 3735 497913144 497913024 2.430000e-12 84.2
6 TraesCS5A01G514800 chr4B 87.017 932 61 27 2186 3077 639150189 639149278 0.000000e+00 996.0
7 TraesCS5A01G514800 chr4B 91.440 736 39 11 988 1709 639151403 639150678 0.000000e+00 989.0
8 TraesCS5A01G514800 chr4B 89.056 466 35 8 3076 3535 639146013 639145558 7.110000e-157 564.0
9 TraesCS5A01G514800 chr4B 81.938 227 24 10 1 224 639234789 639234577 3.890000e-40 176.0
10 TraesCS5A01G514800 chr4B 93.860 114 4 3 1992 2103 639150413 639150301 6.510000e-38 169.0
11 TraesCS5A01G514800 chr4B 77.850 307 21 10 622 897 639151828 639151538 3.050000e-31 147.0
12 TraesCS5A01G514800 chr4B 86.486 74 8 2 511 584 639151971 639151900 3.140000e-11 80.5
13 TraesCS5A01G514800 chr3D 84.713 471 37 12 1135 1576 49199892 49200356 4.500000e-119 438.0
14 TraesCS5A01G514800 chr3D 90.230 174 9 7 223 394 604777347 604777514 1.770000e-53 220.0
15 TraesCS5A01G514800 chr3D 90.058 171 11 5 225 394 582171323 582171488 2.290000e-52 217.0
16 TraesCS5A01G514800 chr3D 100.000 35 0 0 3615 3649 149553083 149553117 8.790000e-07 65.8
17 TraesCS5A01G514800 chr1B 84.322 472 37 14 1135 1576 52441384 52441848 9.730000e-116 427.0
18 TraesCS5A01G514800 chr1B 84.615 182 23 1 1614 1790 657606544 657606725 3.890000e-40 176.0
19 TraesCS5A01G514800 chr1B 82.418 182 27 3 1614 1790 52441835 52442016 1.820000e-33 154.0
20 TraesCS5A01G514800 chr7B 83.439 471 38 13 1135 1576 663233696 663233237 5.900000e-108 401.0
21 TraesCS5A01G514800 chr7B 82.682 179 24 3 1617 1789 459353563 459353386 6.560000e-33 152.0
22 TraesCS5A01G514800 chr7A 82.845 478 39 21 1135 1576 89466805 89466335 4.590000e-104 388.0
23 TraesCS5A01G514800 chr7A 82.672 479 40 18 1135 1576 23513033 23512561 5.940000e-103 385.0
24 TraesCS5A01G514800 chr3B 82.627 472 39 19 1135 1576 46241066 46241524 9.940000e-101 377.0
25 TraesCS5A01G514800 chr2B 82.415 472 41 18 1135 1576 343988567 343989026 1.290000e-99 374.0
26 TraesCS5A01G514800 chr2B 90.286 175 12 5 226 398 682227790 682227961 1.370000e-54 224.0
27 TraesCS5A01G514800 chr2B 89.503 181 11 7 224 402 687383157 687382983 4.930000e-54 222.0
28 TraesCS5A01G514800 chr2B 97.143 35 1 0 3615 3649 746316207 746316173 4.090000e-05 60.2
29 TraesCS5A01G514800 chr6D 91.954 174 9 5 224 395 453197170 453197340 4.890000e-59 239.0
30 TraesCS5A01G514800 chr6D 89.326 178 12 5 224 401 115876999 115876829 2.290000e-52 217.0
31 TraesCS5A01G514800 chr2D 92.638 163 6 4 228 390 76872409 76872253 2.950000e-56 230.0
32 TraesCS5A01G514800 chr5D 91.667 168 9 5 228 393 396818842 396818678 1.060000e-55 228.0
33 TraesCS5A01G514800 chr6B 87.978 183 16 5 219 398 706113258 706113437 1.070000e-50 211.0
34 TraesCS5A01G514800 chr7D 81.712 257 27 9 1557 1793 558930613 558930357 2.990000e-46 196.0
35 TraesCS5A01G514800 chr3A 84.615 182 23 3 1614 1790 62111646 62111827 3.890000e-40 176.0
36 TraesCS5A01G514800 chr6A 100.000 31 0 0 3615 3645 546661984 546662014 1.470000e-04 58.4
37 TraesCS5A01G514800 chr6A 100.000 31 0 0 3615 3645 546666304 546666334 1.470000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G514800 chr5A 678228592 678232382 3790 True 7001.000000 7001 100.000000 1 3791 1 chr5A.!!$R1 3790
1 TraesCS5A01G514800 chr4D 497913024 497917054 4030 True 861.550000 1770 85.058750 1 3735 4 chr4D.!!$R2 3734
2 TraesCS5A01G514800 chr4B 639145558 639151971 6413 True 490.916667 996 87.618167 511 3535 6 chr4B.!!$R2 3024
3 TraesCS5A01G514800 chr1B 52441384 52442016 632 False 290.500000 427 83.370000 1135 1790 2 chr1B.!!$F2 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
433 434 0.181587 TTGGCAAAGTTGAGGACGGA 59.818 50.0 0.00 0.00 0.00 4.69 F
1772 2223 0.034059 AGTGTGTCAGTAGCAGCCAC 59.966 55.0 0.00 0.00 0.00 5.01 F
2185 2770 0.037303 AGTGCTGCACCACATTAGCT 59.963 50.0 27.74 4.35 38.18 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 2418 0.034186 AAAGCGCTGGGATGAATGGA 60.034 50.000 12.58 0.00 0.0 3.41 R
2579 3181 0.036732 AGATCACGCCAAAAGAGCCA 59.963 50.000 0.00 0.00 0.0 4.75 R
3242 7155 1.004560 TTGACTCGCTGGCCTGAAG 60.005 57.895 14.77 11.85 0.0 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.417933 CCTGAGCCAAAGAAGATTCACG 59.582 50.000 0.00 0.00 0.00 4.35
52 53 5.907197 AAGAAGATTCACGTACACTGTTG 57.093 39.130 0.00 0.00 0.00 3.33
54 55 5.357257 AGAAGATTCACGTACACTGTTGTT 58.643 37.500 0.00 0.00 37.15 2.83
55 56 6.509656 AGAAGATTCACGTACACTGTTGTTA 58.490 36.000 0.00 0.00 37.15 2.41
69 70 4.567558 ACTGTTGTTATCGTCGTCAAAACA 59.432 37.500 0.00 0.00 0.00 2.83
70 71 5.235616 ACTGTTGTTATCGTCGTCAAAACAT 59.764 36.000 0.00 0.00 30.76 2.71
83 84 4.368874 TCAAAACATGACACCACACTTG 57.631 40.909 0.00 0.00 31.50 3.16
84 85 3.761218 TCAAAACATGACACCACACTTGT 59.239 39.130 0.00 0.00 31.50 3.16
85 86 3.781079 AAACATGACACCACACTTGTG 57.219 42.857 0.00 2.13 45.23 3.33
90 91 4.021544 ACATGACACCACACTTGTGTTTTT 60.022 37.500 0.00 0.00 46.43 1.94
110 111 9.243637 TGTTTTTATCATGTTTTTCTCTTTCGG 57.756 29.630 0.00 0.00 0.00 4.30
114 115 9.458374 TTTATCATGTTTTTCTCTTTCGGAAAC 57.542 29.630 0.00 0.00 33.22 2.78
118 119 8.289618 TCATGTTTTTCTCTTTCGGAAACATAG 58.710 33.333 11.10 7.47 44.53 2.23
119 120 6.966021 TGTTTTTCTCTTTCGGAAACATAGG 58.034 36.000 0.00 0.00 35.86 2.57
121 122 7.067737 TGTTTTTCTCTTTCGGAAACATAGGTT 59.932 33.333 0.00 0.00 35.86 3.50
123 124 7.576861 TTTCTCTTTCGGAAACATAGGTTTT 57.423 32.000 6.98 0.00 46.84 2.43
124 125 6.554334 TCTCTTTCGGAAACATAGGTTTTG 57.446 37.500 6.98 3.66 46.84 2.44
126 127 6.204108 TCTCTTTCGGAAACATAGGTTTTGTC 59.796 38.462 6.98 0.00 46.84 3.18
127 128 6.059484 TCTTTCGGAAACATAGGTTTTGTCT 58.941 36.000 6.98 0.00 46.84 3.41
128 129 6.544564 TCTTTCGGAAACATAGGTTTTGTCTT 59.455 34.615 6.98 0.00 46.84 3.01
197 198 1.014352 ACTTGGCAAACAGACACGAC 58.986 50.000 0.00 0.00 32.34 4.34
198 199 0.307760 CTTGGCAAACAGACACGACC 59.692 55.000 0.00 0.00 32.34 4.79
212 213 2.888594 CACGACCGGTGTGATTTATCT 58.111 47.619 24.28 0.00 41.89 1.98
224 225 7.095397 CGGTGTGATTTATCTGCCGAATAATAA 60.095 37.037 11.69 0.00 37.83 1.40
225 226 8.730680 GGTGTGATTTATCTGCCGAATAATAAT 58.269 33.333 0.00 0.00 0.00 1.28
235 236 8.138365 TCTGCCGAATAATAATACAGTTTGTC 57.862 34.615 0.00 0.00 0.00 3.18
236 237 7.985184 TCTGCCGAATAATAATACAGTTTGTCT 59.015 33.333 0.00 0.00 0.00 3.41
238 239 9.602568 TGCCGAATAATAATACAGTTTGTCTAA 57.397 29.630 0.00 0.00 0.00 2.10
280 281 8.561738 TTTTAAGGATGTCACATCTAAACTCC 57.438 34.615 17.46 0.18 0.00 3.85
281 282 7.496346 TTAAGGATGTCACATCTAAACTCCT 57.504 36.000 17.46 2.78 33.37 3.69
282 283 8.603898 TTAAGGATGTCACATCTAAACTCCTA 57.396 34.615 17.46 0.00 31.77 2.94
283 284 6.472686 AGGATGTCACATCTAAACTCCTAC 57.527 41.667 17.46 0.00 30.26 3.18
284 285 5.958380 AGGATGTCACATCTAAACTCCTACA 59.042 40.000 17.46 0.00 30.26 2.74
285 286 6.440647 AGGATGTCACATCTAAACTCCTACAA 59.559 38.462 17.46 0.00 30.26 2.41
286 287 7.038302 AGGATGTCACATCTAAACTCCTACAAA 60.038 37.037 17.46 0.00 30.26 2.83
287 288 7.770897 GGATGTCACATCTAAACTCCTACAAAT 59.229 37.037 17.46 0.00 0.00 2.32
288 289 9.817809 GATGTCACATCTAAACTCCTACAAATA 57.182 33.333 10.81 0.00 0.00 1.40
352 353 7.823745 AAAAATAGACCACAAACAGAGATGT 57.176 32.000 0.00 0.00 0.00 3.06
353 354 6.808008 AAATAGACCACAAACAGAGATGTG 57.192 37.500 0.00 0.00 45.06 3.21
364 365 8.484641 ACAAACAGAGATGTGACATAGTTATG 57.515 34.615 0.00 0.00 39.55 1.90
391 392 6.312399 CATCTAGATGTGTCCTAGACAGAC 57.688 45.833 22.42 0.00 43.57 3.51
392 393 4.783055 TCTAGATGTGTCCTAGACAGACC 58.217 47.826 0.00 0.00 43.57 3.85
393 394 2.741145 AGATGTGTCCTAGACAGACCC 58.259 52.381 0.00 0.00 43.57 4.46
394 395 2.043115 AGATGTGTCCTAGACAGACCCA 59.957 50.000 0.00 0.00 43.57 4.51
395 396 2.623418 TGTGTCCTAGACAGACCCAT 57.377 50.000 0.00 0.00 43.57 4.00
396 397 3.750501 TGTGTCCTAGACAGACCCATA 57.249 47.619 0.00 0.00 43.57 2.74
397 398 4.055710 TGTGTCCTAGACAGACCCATAA 57.944 45.455 0.00 0.00 43.57 1.90
398 399 4.620723 TGTGTCCTAGACAGACCCATAAT 58.379 43.478 0.00 0.00 43.57 1.28
399 400 5.773091 TGTGTCCTAGACAGACCCATAATA 58.227 41.667 0.00 0.00 43.57 0.98
400 401 6.199376 TGTGTCCTAGACAGACCCATAATAA 58.801 40.000 0.00 0.00 43.57 1.40
401 402 6.844388 TGTGTCCTAGACAGACCCATAATAAT 59.156 38.462 0.00 0.00 43.57 1.28
402 403 8.008332 TGTGTCCTAGACAGACCCATAATAATA 58.992 37.037 0.00 0.00 43.57 0.98
403 404 9.036980 GTGTCCTAGACAGACCCATAATAATAT 57.963 37.037 0.00 0.00 43.57 1.28
404 405 9.035890 TGTCCTAGACAGACCCATAATAATATG 57.964 37.037 0.00 0.00 37.67 1.78
405 406 7.982354 GTCCTAGACAGACCCATAATAATATGC 59.018 40.741 0.00 0.00 34.26 3.14
406 407 7.901322 TCCTAGACAGACCCATAATAATATGCT 59.099 37.037 0.00 0.00 38.06 3.79
407 408 8.543774 CCTAGACAGACCCATAATAATATGCTT 58.456 37.037 0.00 0.00 38.06 3.91
408 409 9.376075 CTAGACAGACCCATAATAATATGCTTG 57.624 37.037 0.00 0.00 38.06 4.01
409 410 7.170965 AGACAGACCCATAATAATATGCTTGG 58.829 38.462 0.00 0.00 38.06 3.61
410 411 6.852404 ACAGACCCATAATAATATGCTTGGT 58.148 36.000 0.00 0.00 38.06 3.67
411 412 6.716628 ACAGACCCATAATAATATGCTTGGTG 59.283 38.462 2.90 0.00 38.06 4.17
412 413 6.716628 CAGACCCATAATAATATGCTTGGTGT 59.283 38.462 2.90 0.00 38.06 4.16
413 414 6.716628 AGACCCATAATAATATGCTTGGTGTG 59.283 38.462 2.90 0.00 38.06 3.82
414 415 6.372931 ACCCATAATAATATGCTTGGTGTGT 58.627 36.000 0.00 0.00 38.06 3.72
425 426 2.270047 CTTGGTGTGTTGGCAAAGTTG 58.730 47.619 0.00 0.00 0.00 3.16
427 428 1.476085 TGGTGTGTTGGCAAAGTTGAG 59.524 47.619 0.00 0.00 0.00 3.02
433 434 0.181587 TTGGCAAAGTTGAGGACGGA 59.818 50.000 0.00 0.00 0.00 4.69
434 435 0.400213 TGGCAAAGTTGAGGACGGAT 59.600 50.000 0.00 0.00 0.00 4.18
449 450 2.621000 GATGATGACGCGGCGTTC 59.379 61.111 29.98 23.13 41.37 3.95
459 460 1.579429 GCGGCGTTCCAGTGAAAAT 59.421 52.632 9.37 0.00 30.79 1.82
460 461 0.454452 GCGGCGTTCCAGTGAAAATC 60.454 55.000 9.37 0.00 30.79 2.17
461 462 0.871722 CGGCGTTCCAGTGAAAATCA 59.128 50.000 0.00 0.00 30.79 2.57
462 463 1.265635 CGGCGTTCCAGTGAAAATCAA 59.734 47.619 0.00 0.00 30.79 2.57
463 464 2.287308 CGGCGTTCCAGTGAAAATCAAA 60.287 45.455 0.00 0.00 30.79 2.69
466 467 3.308530 CGTTCCAGTGAAAATCAAAGCC 58.691 45.455 0.00 0.00 30.79 4.35
468 469 4.692228 GTTCCAGTGAAAATCAAAGCCAA 58.308 39.130 0.00 0.00 30.79 4.52
469 470 5.115480 GTTCCAGTGAAAATCAAAGCCAAA 58.885 37.500 0.00 0.00 30.79 3.28
472 531 5.104982 TCCAGTGAAAATCAAAGCCAAAAGT 60.105 36.000 0.00 0.00 0.00 2.66
475 534 7.254421 CCAGTGAAAATCAAAGCCAAAAGTTAC 60.254 37.037 0.00 0.00 0.00 2.50
481 540 6.870971 ATCAAAGCCAAAAGTTACTCGTAA 57.129 33.333 0.00 0.00 0.00 3.18
491 550 8.347035 CCAAAAGTTACTCGTAATTTGAAAGGA 58.653 33.333 13.44 0.00 31.61 3.36
493 552 8.897872 AAAGTTACTCGTAATTTGAAAGGAGA 57.102 30.769 3.34 0.00 33.09 3.71
494 553 8.535690 AAGTTACTCGTAATTTGAAAGGAGAG 57.464 34.615 3.34 3.98 33.09 3.20
495 554 7.097834 AGTTACTCGTAATTTGAAAGGAGAGG 58.902 38.462 3.34 0.00 33.09 3.69
497 556 4.253685 CTCGTAATTTGAAAGGAGAGGCA 58.746 43.478 0.00 0.00 30.92 4.75
498 557 4.843728 TCGTAATTTGAAAGGAGAGGCAT 58.156 39.130 0.00 0.00 0.00 4.40
499 558 5.253330 TCGTAATTTGAAAGGAGAGGCATT 58.747 37.500 0.00 0.00 0.00 3.56
500 559 5.123820 TCGTAATTTGAAAGGAGAGGCATTG 59.876 40.000 0.00 0.00 0.00 2.82
501 560 3.881937 ATTTGAAAGGAGAGGCATTGC 57.118 42.857 0.00 0.00 0.00 3.56
503 562 2.291209 TGAAAGGAGAGGCATTGCAA 57.709 45.000 11.39 0.00 0.00 4.08
505 564 3.167485 TGAAAGGAGAGGCATTGCAAAT 58.833 40.909 11.39 0.00 0.00 2.32
506 565 3.194116 TGAAAGGAGAGGCATTGCAAATC 59.806 43.478 11.39 5.38 0.00 2.17
507 566 2.822707 AGGAGAGGCATTGCAAATCT 57.177 45.000 11.39 10.15 0.00 2.40
513 585 3.568853 AGAGGCATTGCAAATCTCATAGC 59.431 43.478 21.11 9.52 0.00 2.97
529 601 0.614979 TAGCCCTCGAGCCCATATCC 60.615 60.000 6.99 0.00 0.00 2.59
548 621 2.764572 TCCGGGACAGTTTTATCTCTCC 59.235 50.000 0.00 0.00 0.00 3.71
549 622 2.766828 CCGGGACAGTTTTATCTCTCCT 59.233 50.000 0.00 0.00 0.00 3.69
550 623 3.197983 CCGGGACAGTTTTATCTCTCCTT 59.802 47.826 0.00 0.00 0.00 3.36
551 624 4.323562 CCGGGACAGTTTTATCTCTCCTTT 60.324 45.833 0.00 0.00 0.00 3.11
601 701 1.210155 GTTCATCACGCAACCTGCC 59.790 57.895 0.00 0.00 41.12 4.85
658 925 2.951745 CTGAGACGCGGACGCATC 60.952 66.667 17.35 11.27 45.53 3.91
659 926 3.402691 CTGAGACGCGGACGCATCT 62.403 63.158 15.37 15.37 46.79 2.90
733 1000 1.035932 TGCCGTGGAGTAGGAGTAGC 61.036 60.000 0.00 0.00 0.00 3.58
735 1002 1.471119 CCGTGGAGTAGGAGTAGCAA 58.529 55.000 0.00 0.00 0.00 3.91
778 1054 0.473755 CAACCATCATCCATCCCCGA 59.526 55.000 0.00 0.00 0.00 5.14
783 1059 2.636380 ATCATCCATCCCCGACCCCA 62.636 60.000 0.00 0.00 0.00 4.96
784 1060 2.448542 ATCCATCCCCGACCCCAG 60.449 66.667 0.00 0.00 0.00 4.45
807 1092 0.929824 CCACGCACGCACAAGAAAAG 60.930 55.000 0.00 0.00 0.00 2.27
818 1103 1.002011 AAGAAAAGCTCCTCCGCCC 60.002 57.895 0.00 0.00 0.00 6.13
820 1105 4.410400 AAAAGCTCCTCCGCCCCG 62.410 66.667 0.00 0.00 0.00 5.73
918 1216 1.371558 GTCACCACTCCCACCAGAC 59.628 63.158 0.00 0.00 0.00 3.51
920 1218 2.923035 ACCACTCCCACCAGACCG 60.923 66.667 0.00 0.00 0.00 4.79
960 1279 3.038417 CGGCCGGATTCGATCTGC 61.038 66.667 20.10 0.00 39.00 4.26
962 1281 2.108976 GCCGGATTCGATCTGCCA 59.891 61.111 5.05 0.00 39.00 4.92
963 1282 2.247437 GCCGGATTCGATCTGCCAC 61.247 63.158 5.05 0.00 39.00 5.01
964 1283 1.443407 CCGGATTCGATCTGCCACT 59.557 57.895 0.00 0.00 39.00 4.00
967 1286 1.338337 CGGATTCGATCTGCCACTACT 59.662 52.381 0.00 0.00 39.00 2.57
1341 1743 1.019278 TCCGCGCTGTCAATTTCCTC 61.019 55.000 5.56 0.00 0.00 3.71
1356 1758 3.972950 TTCCTCATCTCGAATCGACTC 57.027 47.619 0.00 0.00 0.00 3.36
1358 1760 1.950216 CCTCATCTCGAATCGACTCCA 59.050 52.381 0.00 0.00 0.00 3.86
1364 1766 4.720649 TCTCGAATCGACTCCAGATTTT 57.279 40.909 0.00 0.00 38.32 1.82
1365 1767 4.424626 TCTCGAATCGACTCCAGATTTTG 58.575 43.478 0.00 0.00 38.32 2.44
1371 1773 3.926616 TCGACTCCAGATTTTGTTCCTC 58.073 45.455 0.00 0.00 0.00 3.71
1372 1774 3.578716 TCGACTCCAGATTTTGTTCCTCT 59.421 43.478 0.00 0.00 0.00 3.69
1373 1775 3.681897 CGACTCCAGATTTTGTTCCTCTG 59.318 47.826 0.00 0.00 36.89 3.35
1374 1776 4.646572 GACTCCAGATTTTGTTCCTCTGT 58.353 43.478 0.00 0.00 35.67 3.41
1375 1777 4.392940 ACTCCAGATTTTGTTCCTCTGTG 58.607 43.478 0.00 0.00 35.67 3.66
1376 1778 4.103153 ACTCCAGATTTTGTTCCTCTGTGA 59.897 41.667 0.00 0.00 35.67 3.58
1377 1779 4.645535 TCCAGATTTTGTTCCTCTGTGAG 58.354 43.478 0.00 0.00 35.67 3.51
1378 1780 4.103153 TCCAGATTTTGTTCCTCTGTGAGT 59.897 41.667 0.00 0.00 35.67 3.41
1389 1791 6.015688 TGTTCCTCTGTGAGTTTACTAATCGT 60.016 38.462 0.00 0.00 0.00 3.73
1393 1795 5.396484 TCTGTGAGTTTACTAATCGTTCGG 58.604 41.667 0.00 0.00 0.00 4.30
1394 1796 3.922240 TGTGAGTTTACTAATCGTTCGGC 59.078 43.478 0.00 0.00 0.00 5.54
1395 1797 3.305361 GTGAGTTTACTAATCGTTCGGCC 59.695 47.826 0.00 0.00 0.00 6.13
1396 1798 2.533129 GAGTTTACTAATCGTTCGGCCG 59.467 50.000 22.12 22.12 0.00 6.13
1397 1799 2.164219 AGTTTACTAATCGTTCGGCCGA 59.836 45.455 27.28 27.28 41.73 5.54
1412 1831 4.520846 CGATTTCGTGCAGGCGCC 62.521 66.667 21.89 21.89 37.32 6.53
1756 2207 0.942252 CACCATCGCCATGATCAGTG 59.058 55.000 0.09 0.00 34.13 3.66
1758 2209 0.942252 CCATCGCCATGATCAGTGTG 59.058 55.000 0.09 1.40 34.13 3.82
1769 2220 2.266554 GATCAGTGTGTCAGTAGCAGC 58.733 52.381 0.00 0.00 0.00 5.25
1772 2223 0.034059 AGTGTGTCAGTAGCAGCCAC 59.966 55.000 0.00 0.00 0.00 5.01
1773 2224 0.951040 GTGTGTCAGTAGCAGCCACC 60.951 60.000 0.00 0.00 0.00 4.61
1795 2246 1.269723 TCACACACGCCAAACAAACAA 59.730 42.857 0.00 0.00 0.00 2.83
1799 2276 2.476619 CACACGCCAAACAAACAAACAA 59.523 40.909 0.00 0.00 0.00 2.83
1831 2327 6.179756 TCAGATAAACTGGAGCTTTGCAATA 58.820 36.000 0.00 0.00 45.76 1.90
1832 2328 6.094048 TCAGATAAACTGGAGCTTTGCAATAC 59.906 38.462 0.00 0.00 45.76 1.89
1833 2329 3.559238 AAACTGGAGCTTTGCAATACG 57.441 42.857 0.00 0.00 0.00 3.06
1834 2330 0.804989 ACTGGAGCTTTGCAATACGC 59.195 50.000 0.00 3.74 42.89 4.42
1835 2331 0.099436 CTGGAGCTTTGCAATACGCC 59.901 55.000 13.04 13.04 41.33 5.68
1836 2332 0.607762 TGGAGCTTTGCAATACGCCA 60.608 50.000 17.09 17.09 41.33 5.69
1837 2333 0.740737 GGAGCTTTGCAATACGCCAT 59.259 50.000 14.48 0.00 41.33 4.40
1838 2334 1.534595 GGAGCTTTGCAATACGCCATG 60.535 52.381 14.48 0.00 41.33 3.66
1839 2335 0.179129 AGCTTTGCAATACGCCATGC 60.179 50.000 0.00 0.42 41.33 4.06
1843 2339 4.002037 GCAATACGCCATGCAAGC 57.998 55.556 0.00 0.00 42.12 4.01
1844 2340 1.434696 GCAATACGCCATGCAAGCT 59.565 52.632 10.04 0.00 42.12 3.74
1845 2341 0.593263 GCAATACGCCATGCAAGCTC 60.593 55.000 10.04 0.00 42.12 4.09
1846 2342 0.316442 CAATACGCCATGCAAGCTCG 60.316 55.000 10.04 5.57 0.00 5.03
1847 2343 2.051804 AATACGCCATGCAAGCTCGC 62.052 55.000 10.04 0.00 0.00 5.03
1849 2345 4.531912 CGCCATGCAAGCTCGCAG 62.532 66.667 5.20 0.00 46.99 5.18
1850 2346 4.189188 GCCATGCAAGCTCGCAGG 62.189 66.667 5.20 4.51 46.99 4.85
1851 2347 2.437180 CCATGCAAGCTCGCAGGA 60.437 61.111 13.85 0.00 46.28 3.86
1852 2348 2.042259 CCATGCAAGCTCGCAGGAA 61.042 57.895 13.85 0.00 46.28 3.36
1853 2349 1.588824 CCATGCAAGCTCGCAGGAAA 61.589 55.000 13.85 0.00 46.28 3.13
1854 2350 0.179171 CATGCAAGCTCGCAGGAAAG 60.179 55.000 5.09 0.00 46.28 2.62
1855 2351 0.321919 ATGCAAGCTCGCAGGAAAGA 60.322 50.000 5.20 0.00 46.99 2.52
1856 2352 0.534877 TGCAAGCTCGCAGGAAAGAA 60.535 50.000 0.00 0.00 36.86 2.52
1857 2353 0.807496 GCAAGCTCGCAGGAAAGAAT 59.193 50.000 0.00 0.00 0.00 2.40
1858 2354 1.200948 GCAAGCTCGCAGGAAAGAATT 59.799 47.619 0.00 0.00 0.00 2.17
1859 2355 2.352127 GCAAGCTCGCAGGAAAGAATTT 60.352 45.455 0.00 0.00 43.98 1.82
1860 2356 3.858503 GCAAGCTCGCAGGAAAGAATTTT 60.859 43.478 0.00 0.00 39.27 1.82
1861 2357 4.615912 GCAAGCTCGCAGGAAAGAATTTTA 60.616 41.667 0.00 0.00 39.27 1.52
1862 2358 5.460646 CAAGCTCGCAGGAAAGAATTTTAA 58.539 37.500 0.00 0.00 39.27 1.52
1863 2359 5.904362 AGCTCGCAGGAAAGAATTTTAAT 57.096 34.783 0.00 0.00 39.27 1.40
1864 2360 6.272822 AGCTCGCAGGAAAGAATTTTAATT 57.727 33.333 0.00 0.00 39.27 1.40
1865 2361 6.691508 AGCTCGCAGGAAAGAATTTTAATTT 58.308 32.000 0.00 0.00 39.27 1.82
1878 2374 9.487790 AAGAATTTTAATTTTCAAGATTCCGCA 57.512 25.926 0.00 0.00 30.59 5.69
1892 2388 4.170062 CGCAGCACAATCCAGGCG 62.170 66.667 0.00 0.00 38.45 5.52
1909 2405 1.940613 GGCGCTTCTTTGGGTGTATAG 59.059 52.381 7.64 0.00 0.00 1.31
1911 2407 3.431207 GGCGCTTCTTTGGGTGTATAGTA 60.431 47.826 7.64 0.00 0.00 1.82
1959 2457 2.202987 CGGCCTGACAGCTGATCC 60.203 66.667 23.35 11.91 42.00 3.36
1961 2459 1.300963 GGCCTGACAGCTGATCCAA 59.699 57.895 23.35 0.00 0.00 3.53
1967 2465 3.405831 CTGACAGCTGATCCAACTTTGA 58.594 45.455 23.35 0.00 0.00 2.69
1968 2466 3.141398 TGACAGCTGATCCAACTTTGAC 58.859 45.455 23.35 0.00 0.00 3.18
1969 2467 3.141398 GACAGCTGATCCAACTTTGACA 58.859 45.455 23.35 0.00 0.00 3.58
1970 2468 2.880890 ACAGCTGATCCAACTTTGACAC 59.119 45.455 23.35 0.00 0.00 3.67
1971 2469 3.144506 CAGCTGATCCAACTTTGACACT 58.855 45.455 8.42 0.00 0.00 3.55
1972 2470 3.567164 CAGCTGATCCAACTTTGACACTT 59.433 43.478 8.42 0.00 0.00 3.16
1973 2471 4.037208 CAGCTGATCCAACTTTGACACTTT 59.963 41.667 8.42 0.00 0.00 2.66
1974 2472 4.037208 AGCTGATCCAACTTTGACACTTTG 59.963 41.667 0.00 0.00 0.00 2.77
1975 2473 4.202050 GCTGATCCAACTTTGACACTTTGT 60.202 41.667 0.00 0.00 0.00 2.83
1976 2474 5.247507 TGATCCAACTTTGACACTTTGTG 57.752 39.130 0.00 0.00 39.75 3.33
2034 2544 3.030882 GCGCCGCGGAATCTACTC 61.031 66.667 33.48 7.28 0.00 2.59
2035 2545 2.722487 CGCCGCGGAATCTACTCT 59.278 61.111 33.48 0.00 0.00 3.24
2036 2546 1.947013 CGCCGCGGAATCTACTCTA 59.053 57.895 33.48 0.00 0.00 2.43
2069 2580 3.488090 GGCGCAACTGTACCGAGC 61.488 66.667 10.83 0.00 0.00 5.03
2070 2581 2.736995 GCGCAACTGTACCGAGCA 60.737 61.111 0.30 0.00 0.00 4.26
2071 2582 2.314647 GCGCAACTGTACCGAGCAA 61.315 57.895 0.30 0.00 0.00 3.91
2072 2583 1.491563 CGCAACTGTACCGAGCAAC 59.508 57.895 0.00 0.00 0.00 4.17
2073 2584 1.218875 CGCAACTGTACCGAGCAACA 61.219 55.000 0.00 0.00 0.00 3.33
2074 2585 0.234884 GCAACTGTACCGAGCAACAC 59.765 55.000 0.00 0.00 0.00 3.32
2075 2586 0.506932 CAACTGTACCGAGCAACACG 59.493 55.000 0.00 0.00 0.00 4.49
2076 2587 0.386476 AACTGTACCGAGCAACACGA 59.614 50.000 0.00 0.00 0.00 4.35
2077 2588 0.318445 ACTGTACCGAGCAACACGAC 60.318 55.000 0.00 0.00 0.00 4.34
2078 2589 0.318360 CTGTACCGAGCAACACGACA 60.318 55.000 0.00 0.00 0.00 4.35
2129 2714 8.394121 CCTGAAATTCTGAATTAGTCTACTTGC 58.606 37.037 15.45 0.00 0.00 4.01
2131 2716 5.975410 ATTCTGAATTAGTCTACTTGCGC 57.025 39.130 0.00 0.00 0.00 6.09
2137 2722 1.758936 TAGTCTACTTGCGCCTGCTA 58.241 50.000 4.18 0.00 43.34 3.49
2140 2725 1.878522 CTACTTGCGCCTGCTACCG 60.879 63.158 4.18 0.00 43.34 4.02
2181 2766 1.174712 GGTCAGTGCTGCACCACATT 61.175 55.000 27.74 7.42 38.18 2.71
2182 2767 1.522668 GTCAGTGCTGCACCACATTA 58.477 50.000 27.74 5.77 38.18 1.90
2183 2768 1.466167 GTCAGTGCTGCACCACATTAG 59.534 52.381 27.74 10.24 38.18 1.73
2184 2769 0.169672 CAGTGCTGCACCACATTAGC 59.830 55.000 27.74 0.89 38.18 3.09
2185 2770 0.037303 AGTGCTGCACCACATTAGCT 59.963 50.000 27.74 4.35 38.18 3.32
2350 2944 2.919856 AGACACGGTCCAGCAGCT 60.920 61.111 0.00 0.00 32.18 4.24
2404 3006 1.478105 CATGGTCGACTGATCTGGACA 59.522 52.381 16.46 1.43 0.00 4.02
2409 3011 0.799917 CGACTGATCTGGACAGTGCG 60.800 60.000 0.00 0.00 46.57 5.34
2430 3032 3.158676 GGGCCGACTTGTAGAGATATCT 58.841 50.000 4.47 4.47 0.00 1.98
2431 3033 3.057174 GGGCCGACTTGTAGAGATATCTG 60.057 52.174 10.74 0.00 0.00 2.90
2432 3034 3.057174 GGCCGACTTGTAGAGATATCTGG 60.057 52.174 10.74 2.76 0.00 3.86
2433 3035 3.821600 GCCGACTTGTAGAGATATCTGGA 59.178 47.826 10.74 0.00 0.00 3.86
2448 3050 2.969238 GGATGGATGGTCGCTGCG 60.969 66.667 17.25 17.25 0.00 5.18
2462 3064 3.120979 CTGCGGCCATCTGTGCATG 62.121 63.158 2.24 0.00 36.64 4.06
2463 3065 4.564116 GCGGCCATCTGTGCATGC 62.564 66.667 11.82 11.82 0.00 4.06
2464 3066 3.135457 CGGCCATCTGTGCATGCA 61.135 61.111 18.46 18.46 0.00 3.96
2465 3067 2.493030 GGCCATCTGTGCATGCAC 59.507 61.111 38.00 38.00 46.33 4.57
2483 3085 3.261580 GCACAATGGGCTAAAAATGACC 58.738 45.455 0.00 0.00 0.00 4.02
2502 3104 1.134965 CCTCACAACCGCAACCAAAAA 60.135 47.619 0.00 0.00 0.00 1.94
2575 3177 2.089349 GTCGGAAGCACAGCTCGAC 61.089 63.158 14.50 14.50 44.15 4.20
2579 3181 1.153745 GAAGCACAGCTCGACCGAT 60.154 57.895 0.00 0.00 38.25 4.18
2582 3184 2.887568 CACAGCTCGACCGATGGC 60.888 66.667 0.00 0.00 0.00 4.40
2597 3199 1.064654 GATGGCTCTTTTGGCGTGATC 59.935 52.381 0.00 0.00 35.06 2.92
2606 3208 0.800683 TTGGCGTGATCTTCGTAGCG 60.801 55.000 11.15 0.00 0.00 4.26
2609 3211 0.524816 GCGTGATCTTCGTAGCGGAA 60.525 55.000 11.15 0.00 0.00 4.30
2688 3307 5.233689 AGCTGTTTTGTTACTGTCTCGTTAC 59.766 40.000 0.00 0.00 0.00 2.50
2715 3337 7.250569 TGTCGGGTTACTAGTAAATTAACTCG 58.749 38.462 16.82 17.33 46.45 4.18
2734 3356 2.755655 TCGGGTTGTTTGTCAATTGTGT 59.244 40.909 5.13 0.00 38.38 3.72
2797 3419 2.880268 CAATGCATCGTATGACACCCAT 59.120 45.455 0.00 0.00 39.25 4.00
2861 3488 2.371259 GGGGTCTCTGCTTCCTCCC 61.371 68.421 0.00 0.00 34.68 4.30
2872 3499 0.983378 CTTCCTCCCCCGGTCTCAAT 60.983 60.000 0.00 0.00 0.00 2.57
2897 3527 1.336887 TGGCTCGAGCAGTAGTTTGTC 60.337 52.381 36.27 16.67 44.36 3.18
2963 3596 2.030862 TTACCCGCACCAACGTCC 59.969 61.111 0.00 0.00 0.00 4.79
3038 3675 2.672996 GCTTCGGCCTCCTGCAAA 60.673 61.111 0.00 0.00 43.89 3.68
3040 3677 1.878775 CTTCGGCCTCCTGCAAAAG 59.121 57.895 0.00 0.00 43.89 2.27
3103 7008 9.650539 CATCATCTTCTTCTTCTCTCTGTTTTA 57.349 33.333 0.00 0.00 0.00 1.52
3143 7056 1.620819 ACCATGTCTGACACTCTGACC 59.379 52.381 13.50 0.00 42.43 4.02
3145 7058 1.541588 CATGTCTGACACTCTGACCGA 59.458 52.381 13.50 0.00 42.43 4.69
3163 7076 5.106118 TGACCGAAACTGTGAATTGTCAAAA 60.106 36.000 0.00 0.00 34.87 2.44
3242 7155 2.288729 ACGTTTTTCCTGCCGTAGAAAC 59.711 45.455 0.00 0.00 31.93 2.78
3253 7166 1.079503 CGTAGAAACTTCAGGCCAGC 58.920 55.000 5.01 0.00 0.00 4.85
3277 7190 0.719465 CAAGTAATGACGCACGGGAC 59.281 55.000 0.00 0.00 0.00 4.46
3317 7233 3.008485 ACTTGAGAGGAGCTTTCCGATTT 59.992 43.478 0.00 0.00 34.28 2.17
3342 7261 4.562757 CCCAACGATCTAGACCTTGACAAA 60.563 45.833 0.00 0.00 0.00 2.83
3343 7262 5.178797 CCAACGATCTAGACCTTGACAAAT 58.821 41.667 0.00 0.00 0.00 2.32
3352 7271 3.834231 AGACCTTGACAAATGGGAAATGG 59.166 43.478 0.00 0.00 0.00 3.16
3432 7353 4.949856 GGAAATCTGGGATACTTTTCAGCA 59.050 41.667 0.00 0.00 0.00 4.41
3434 7355 6.460676 GGAAATCTGGGATACTTTTCAGCATG 60.461 42.308 0.00 0.00 37.54 4.06
3437 7358 2.580322 TGGGATACTTTTCAGCATGGGA 59.420 45.455 0.00 0.00 36.16 4.37
3448 7370 2.285024 GCATGGGAAAAGGCCAGCA 61.285 57.895 5.01 0.00 0.00 4.41
3473 7395 1.134670 ACGAGAGGATGGCTGCTAAAC 60.135 52.381 0.00 0.00 0.00 2.01
3485 7407 3.321497 GCTGCTAAACCGATCTGGATAG 58.679 50.000 10.05 11.37 42.00 2.08
3508 7430 4.974275 GTGTTCTTTTTCTTTAGCGAACCC 59.026 41.667 0.00 0.00 32.11 4.11
3527 7449 2.932855 CATCTGGATGATGTGCTCCT 57.067 50.000 4.72 0.00 45.55 3.69
3529 7451 1.870064 TCTGGATGATGTGCTCCTCA 58.130 50.000 0.00 0.00 32.47 3.86
3535 7457 3.412624 GATGTGCTCCTCAGGGGCC 62.413 68.421 14.98 4.91 34.39 5.80
3540 7462 2.765807 CTCCTCAGGGGCCGTCAT 60.766 66.667 0.00 0.00 34.39 3.06
3541 7463 2.285368 TCCTCAGGGGCCGTCATT 60.285 61.111 0.00 0.00 34.39 2.57
3542 7464 2.124570 CCTCAGGGGCCGTCATTG 60.125 66.667 0.00 0.00 0.00 2.82
3543 7465 2.825836 CTCAGGGGCCGTCATTGC 60.826 66.667 0.00 0.00 0.00 3.56
3545 7467 2.676121 CAGGGGCCGTCATTGCAA 60.676 61.111 0.00 0.00 0.00 4.08
3546 7468 2.676471 AGGGGCCGTCATTGCAAC 60.676 61.111 0.00 0.00 0.00 4.17
3548 7470 2.569354 GGGGCCGTCATTGCAACAA 61.569 57.895 0.00 0.00 0.00 2.83
3549 7471 1.365633 GGGCCGTCATTGCAACAAA 59.634 52.632 0.00 0.00 0.00 2.83
3649 7762 0.902531 ACGTGATCCTTCCGTCCAAT 59.097 50.000 0.00 0.00 0.00 3.16
3651 7764 1.405526 CGTGATCCTTCCGTCCAATGT 60.406 52.381 0.00 0.00 0.00 2.71
3652 7765 2.280628 GTGATCCTTCCGTCCAATGTC 58.719 52.381 0.00 0.00 0.00 3.06
3654 7767 2.093500 TGATCCTTCCGTCCAATGTCAG 60.093 50.000 0.00 0.00 0.00 3.51
3658 7771 1.667724 CTTCCGTCCAATGTCAGATGC 59.332 52.381 0.00 0.00 0.00 3.91
3659 7772 0.612744 TCCGTCCAATGTCAGATGCA 59.387 50.000 0.00 0.00 0.00 3.96
3660 7773 1.210234 TCCGTCCAATGTCAGATGCAT 59.790 47.619 0.00 0.00 0.00 3.96
3716 7834 6.241645 AGGGGATGAGTACAAGAAAGAAAAG 58.758 40.000 0.00 0.00 0.00 2.27
3719 7837 7.230712 GGGGATGAGTACAAGAAAGAAAAGAAA 59.769 37.037 0.00 0.00 0.00 2.52
3720 7838 8.293157 GGGATGAGTACAAGAAAGAAAAGAAAG 58.707 37.037 0.00 0.00 0.00 2.62
3725 7843 9.917872 GAGTACAAGAAAGAAAAGAAAGTACAC 57.082 33.333 0.00 0.00 33.62 2.90
3726 7844 8.890718 AGTACAAGAAAGAAAAGAAAGTACACC 58.109 33.333 0.00 0.00 33.62 4.16
3727 7845 6.782150 ACAAGAAAGAAAAGAAAGTACACCG 58.218 36.000 0.00 0.00 0.00 4.94
3728 7846 6.596497 ACAAGAAAGAAAAGAAAGTACACCGA 59.404 34.615 0.00 0.00 0.00 4.69
3729 7847 7.282450 ACAAGAAAGAAAAGAAAGTACACCGAT 59.718 33.333 0.00 0.00 0.00 4.18
3731 7849 8.221965 AGAAAGAAAAGAAAGTACACCGATTT 57.778 30.769 0.00 0.00 0.00 2.17
3732 7850 8.129211 AGAAAGAAAAGAAAGTACACCGATTTG 58.871 33.333 0.00 0.00 0.00 2.32
3733 7851 6.313744 AGAAAAGAAAGTACACCGATTTGG 57.686 37.500 0.00 0.00 46.41 3.28
3749 7867 7.740519 CCGATTTGGTTCAGATTATTTCAAC 57.259 36.000 0.00 0.00 0.00 3.18
3750 7868 7.538575 CCGATTTGGTTCAGATTATTTCAACT 58.461 34.615 0.00 0.00 0.00 3.16
3751 7869 8.028938 CCGATTTGGTTCAGATTATTTCAACTT 58.971 33.333 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.751806 GTGAATCTTCTTTGGCTCAGGG 59.248 50.000 0.00 0.00 0.00 4.45
29 30 5.815740 ACAACAGTGTACGTGAATCTTCTTT 59.184 36.000 0.00 0.00 35.72 2.52
30 31 5.357257 ACAACAGTGTACGTGAATCTTCTT 58.643 37.500 0.00 0.00 35.72 2.52
31 32 4.945246 ACAACAGTGTACGTGAATCTTCT 58.055 39.130 0.00 0.00 35.72 2.85
42 43 4.221342 TGACGACGATAACAACAGTGTAC 58.779 43.478 0.00 0.00 36.80 2.90
69 70 4.799564 AAAAACACAAGTGTGGTGTCAT 57.200 36.364 15.52 0.00 46.84 3.06
70 71 5.416013 TGATAAAAACACAAGTGTGGTGTCA 59.584 36.000 15.52 9.03 46.84 3.58
73 74 6.272318 ACATGATAAAAACACAAGTGTGGTG 58.728 36.000 15.52 0.00 46.84 4.17
84 85 9.243637 CCGAAAGAGAAAAACATGATAAAAACA 57.756 29.630 0.00 0.00 0.00 2.83
85 86 9.458374 TCCGAAAGAGAAAAACATGATAAAAAC 57.542 29.630 0.00 0.00 0.00 2.43
90 91 8.160521 TGTTTCCGAAAGAGAAAAACATGATA 57.839 30.769 0.00 0.00 35.54 2.15
110 111 5.912955 CGTGGAAAGACAAAACCTATGTTTC 59.087 40.000 0.00 0.00 43.80 2.78
114 115 3.666902 CGCGTGGAAAGACAAAACCTATG 60.667 47.826 0.00 0.00 0.00 2.23
118 119 0.379316 ACGCGTGGAAAGACAAAACC 59.621 50.000 12.93 0.00 0.00 3.27
119 120 1.329599 AGACGCGTGGAAAGACAAAAC 59.670 47.619 20.70 0.00 0.00 2.43
121 122 0.934496 CAGACGCGTGGAAAGACAAA 59.066 50.000 20.70 0.00 0.00 2.83
123 124 1.300620 CCAGACGCGTGGAAAGACA 60.301 57.895 20.70 0.00 40.44 3.41
124 125 1.006571 TCCAGACGCGTGGAAAGAC 60.007 57.895 20.70 0.00 44.01 3.01
126 127 2.383527 GCTCCAGACGCGTGGAAAG 61.384 63.158 20.70 10.32 46.29 2.62
127 128 2.357034 GCTCCAGACGCGTGGAAA 60.357 61.111 20.70 0.00 46.29 3.13
128 129 4.717629 CGCTCCAGACGCGTGGAA 62.718 66.667 20.70 2.04 46.29 3.53
178 179 1.014352 GTCGTGTCTGTTTGCCAAGT 58.986 50.000 0.00 0.00 0.00 3.16
197 198 0.937304 CGGCAGATAAATCACACCGG 59.063 55.000 0.00 0.00 36.08 5.28
198 199 1.934589 TCGGCAGATAAATCACACCG 58.065 50.000 10.37 10.37 38.96 4.94
212 213 9.602568 TTAGACAAACTGTATTATTATTCGGCA 57.397 29.630 0.00 0.00 0.00 5.69
226 227 9.376075 CATCTAGATGTGAATTAGACAAACTGT 57.624 33.333 22.42 0.00 34.23 3.55
254 255 9.010029 GGAGTTTAGATGTGACATCCTTAAAAA 57.990 33.333 21.05 11.39 0.00 1.94
255 256 8.383175 AGGAGTTTAGATGTGACATCCTTAAAA 58.617 33.333 21.05 13.52 31.97 1.52
256 257 7.918076 AGGAGTTTAGATGTGACATCCTTAAA 58.082 34.615 21.05 16.39 31.97 1.52
257 258 7.496346 AGGAGTTTAGATGTGACATCCTTAA 57.504 36.000 21.05 11.73 31.97 1.85
258 259 7.618117 TGTAGGAGTTTAGATGTGACATCCTTA 59.382 37.037 21.05 6.22 37.18 2.69
259 260 6.440647 TGTAGGAGTTTAGATGTGACATCCTT 59.559 38.462 21.05 7.22 37.18 3.36
260 261 5.958380 TGTAGGAGTTTAGATGTGACATCCT 59.042 40.000 21.05 13.52 39.25 3.24
261 262 6.222038 TGTAGGAGTTTAGATGTGACATCC 57.778 41.667 21.05 6.49 0.00 3.51
262 263 8.723942 ATTTGTAGGAGTTTAGATGTGACATC 57.276 34.615 17.46 17.46 0.00 3.06
328 329 7.502226 TCACATCTCTGTTTGTGGTCTATTTTT 59.498 33.333 3.49 0.00 42.72 1.94
329 330 6.998074 TCACATCTCTGTTTGTGGTCTATTTT 59.002 34.615 3.49 0.00 42.72 1.82
330 331 6.428159 GTCACATCTCTGTTTGTGGTCTATTT 59.572 38.462 3.49 0.00 42.72 1.40
331 332 5.934625 GTCACATCTCTGTTTGTGGTCTATT 59.065 40.000 3.49 0.00 42.72 1.73
332 333 5.012046 TGTCACATCTCTGTTTGTGGTCTAT 59.988 40.000 3.49 0.00 42.72 1.98
333 334 4.343814 TGTCACATCTCTGTTTGTGGTCTA 59.656 41.667 3.49 0.00 42.72 2.59
334 335 3.134623 TGTCACATCTCTGTTTGTGGTCT 59.865 43.478 3.49 0.00 42.72 3.85
335 336 3.466836 TGTCACATCTCTGTTTGTGGTC 58.533 45.455 3.49 0.00 42.72 4.02
336 337 3.558931 TGTCACATCTCTGTTTGTGGT 57.441 42.857 3.49 0.00 42.72 4.16
337 338 5.240891 ACTATGTCACATCTCTGTTTGTGG 58.759 41.667 0.00 0.00 42.72 4.17
338 339 6.791887 AACTATGTCACATCTCTGTTTGTG 57.208 37.500 0.00 0.00 43.61 3.33
339 340 8.097038 ACATAACTATGTCACATCTCTGTTTGT 58.903 33.333 0.00 2.03 42.96 2.83
340 341 8.484641 ACATAACTATGTCACATCTCTGTTTG 57.515 34.615 0.00 1.52 42.96 2.93
368 369 5.240623 GGTCTGTCTAGGACACATCTAGATG 59.759 48.000 27.63 27.63 43.25 2.90
369 370 5.381757 GGTCTGTCTAGGACACATCTAGAT 58.618 45.833 0.00 0.00 43.25 1.98
370 371 4.385421 GGGTCTGTCTAGGACACATCTAGA 60.385 50.000 0.00 0.00 37.67 2.43
371 372 3.886505 GGGTCTGTCTAGGACACATCTAG 59.113 52.174 0.00 0.00 37.67 2.43
372 373 3.268595 TGGGTCTGTCTAGGACACATCTA 59.731 47.826 0.00 0.00 41.46 1.98
373 374 2.043115 TGGGTCTGTCTAGGACACATCT 59.957 50.000 0.00 0.00 41.46 2.90
374 375 2.457598 TGGGTCTGTCTAGGACACATC 58.542 52.381 0.00 0.00 41.46 3.06
375 376 2.623418 TGGGTCTGTCTAGGACACAT 57.377 50.000 0.00 0.00 41.46 3.21
377 378 6.726490 TTATTATGGGTCTGTCTAGGACAC 57.274 41.667 0.00 0.00 37.67 3.67
378 379 9.035890 CATATTATTATGGGTCTGTCTAGGACA 57.964 37.037 0.43 0.43 35.04 4.02
379 380 7.982354 GCATATTATTATGGGTCTGTCTAGGAC 59.018 40.741 6.73 0.00 36.49 3.85
380 381 7.901322 AGCATATTATTATGGGTCTGTCTAGGA 59.099 37.037 6.73 0.00 36.49 2.94
381 382 8.083828 AGCATATTATTATGGGTCTGTCTAGG 57.916 38.462 6.73 0.00 36.49 3.02
382 383 9.376075 CAAGCATATTATTATGGGTCTGTCTAG 57.624 37.037 6.73 0.00 36.49 2.43
383 384 8.321353 CCAAGCATATTATTATGGGTCTGTCTA 58.679 37.037 6.73 0.00 36.49 2.59
384 385 7.170965 CCAAGCATATTATTATGGGTCTGTCT 58.829 38.462 6.73 0.00 36.49 3.41
385 386 6.942576 ACCAAGCATATTATTATGGGTCTGTC 59.057 38.462 6.73 0.00 36.49 3.51
386 387 6.716628 CACCAAGCATATTATTATGGGTCTGT 59.283 38.462 6.73 0.00 36.49 3.41
387 388 6.716628 ACACCAAGCATATTATTATGGGTCTG 59.283 38.462 6.73 0.04 36.49 3.51
388 389 6.716628 CACACCAAGCATATTATTATGGGTCT 59.283 38.462 6.73 0.00 36.49 3.85
389 390 6.490040 ACACACCAAGCATATTATTATGGGTC 59.510 38.462 6.73 0.00 36.49 4.46
390 391 6.372931 ACACACCAAGCATATTATTATGGGT 58.627 36.000 6.73 3.51 36.49 4.51
391 392 6.899393 ACACACCAAGCATATTATTATGGG 57.101 37.500 6.73 3.01 36.49 4.00
392 393 7.147312 CCAACACACCAAGCATATTATTATGG 58.853 38.462 6.73 0.00 36.49 2.74
393 394 6.642131 GCCAACACACCAAGCATATTATTATG 59.358 38.462 1.04 1.04 38.61 1.90
394 395 6.323482 TGCCAACACACCAAGCATATTATTAT 59.677 34.615 0.00 0.00 0.00 1.28
395 396 5.654209 TGCCAACACACCAAGCATATTATTA 59.346 36.000 0.00 0.00 0.00 0.98
396 397 4.465660 TGCCAACACACCAAGCATATTATT 59.534 37.500 0.00 0.00 0.00 1.40
397 398 4.022603 TGCCAACACACCAAGCATATTAT 58.977 39.130 0.00 0.00 0.00 1.28
398 399 3.425659 TGCCAACACACCAAGCATATTA 58.574 40.909 0.00 0.00 0.00 0.98
399 400 2.246469 TGCCAACACACCAAGCATATT 58.754 42.857 0.00 0.00 0.00 1.28
400 401 1.921982 TGCCAACACACCAAGCATAT 58.078 45.000 0.00 0.00 0.00 1.78
401 402 1.697284 TTGCCAACACACCAAGCATA 58.303 45.000 0.00 0.00 32.67 3.14
402 403 0.829333 TTTGCCAACACACCAAGCAT 59.171 45.000 0.00 0.00 32.67 3.79
403 404 0.175302 CTTTGCCAACACACCAAGCA 59.825 50.000 0.00 0.00 0.00 3.91
404 405 0.175531 ACTTTGCCAACACACCAAGC 59.824 50.000 0.00 0.00 0.00 4.01
405 406 2.094286 TCAACTTTGCCAACACACCAAG 60.094 45.455 0.00 0.00 0.00 3.61
406 407 1.895798 TCAACTTTGCCAACACACCAA 59.104 42.857 0.00 0.00 0.00 3.67
407 408 1.476085 CTCAACTTTGCCAACACACCA 59.524 47.619 0.00 0.00 0.00 4.17
408 409 1.202405 CCTCAACTTTGCCAACACACC 60.202 52.381 0.00 0.00 0.00 4.16
409 410 1.748493 TCCTCAACTTTGCCAACACAC 59.252 47.619 0.00 0.00 0.00 3.82
410 411 1.748493 GTCCTCAACTTTGCCAACACA 59.252 47.619 0.00 0.00 0.00 3.72
411 412 1.268539 CGTCCTCAACTTTGCCAACAC 60.269 52.381 0.00 0.00 0.00 3.32
412 413 1.021202 CGTCCTCAACTTTGCCAACA 58.979 50.000 0.00 0.00 0.00 3.33
413 414 0.310854 CCGTCCTCAACTTTGCCAAC 59.689 55.000 0.00 0.00 0.00 3.77
414 415 0.181587 TCCGTCCTCAACTTTGCCAA 59.818 50.000 0.00 0.00 0.00 4.52
425 426 1.658717 CGCGTCATCATCCGTCCTC 60.659 63.158 0.00 0.00 0.00 3.71
427 428 2.658593 CCGCGTCATCATCCGTCC 60.659 66.667 4.92 0.00 0.00 4.79
433 434 2.890474 GGAACGCCGCGTCATCAT 60.890 61.111 20.46 2.16 39.99 2.45
434 435 4.365505 TGGAACGCCGCGTCATCA 62.366 61.111 20.46 14.40 39.99 3.07
449 450 5.118286 ACTTTTGGCTTTGATTTTCACTGG 58.882 37.500 0.00 0.00 0.00 4.00
454 455 6.695713 ACGAGTAACTTTTGGCTTTGATTTTC 59.304 34.615 0.00 0.00 0.00 2.29
459 460 6.870971 ATTACGAGTAACTTTTGGCTTTGA 57.129 33.333 0.00 0.00 0.00 2.69
460 461 7.646130 TCAAATTACGAGTAACTTTTGGCTTTG 59.354 33.333 15.92 11.81 31.24 2.77
461 462 7.708998 TCAAATTACGAGTAACTTTTGGCTTT 58.291 30.769 15.92 3.25 31.24 3.51
462 463 7.266922 TCAAATTACGAGTAACTTTTGGCTT 57.733 32.000 15.92 0.00 31.24 4.35
463 464 6.870971 TCAAATTACGAGTAACTTTTGGCT 57.129 33.333 15.92 0.00 31.24 4.75
466 467 9.382244 CTCCTTTCAAATTACGAGTAACTTTTG 57.618 33.333 12.38 12.38 31.40 2.44
468 469 8.897872 TCTCCTTTCAAATTACGAGTAACTTT 57.102 30.769 0.00 0.00 0.00 2.66
469 470 7.603024 CCTCTCCTTTCAAATTACGAGTAACTT 59.397 37.037 0.00 0.00 0.00 2.66
472 531 5.873164 GCCTCTCCTTTCAAATTACGAGTAA 59.127 40.000 0.00 0.00 0.00 2.24
475 534 4.253685 TGCCTCTCCTTTCAAATTACGAG 58.746 43.478 0.00 0.00 0.00 4.18
481 540 3.167485 TGCAATGCCTCTCCTTTCAAAT 58.833 40.909 1.53 0.00 0.00 2.32
491 550 3.568853 GCTATGAGATTTGCAATGCCTCT 59.431 43.478 18.04 2.06 0.00 3.69
493 552 2.626743 GGCTATGAGATTTGCAATGCCT 59.373 45.455 1.53 0.00 35.91 4.75
494 553 2.288640 GGGCTATGAGATTTGCAATGCC 60.289 50.000 1.53 4.56 37.14 4.40
495 554 2.626743 AGGGCTATGAGATTTGCAATGC 59.373 45.455 0.00 0.00 0.00 3.56
497 556 3.144506 CGAGGGCTATGAGATTTGCAAT 58.855 45.455 0.00 0.00 0.00 3.56
498 557 2.170397 TCGAGGGCTATGAGATTTGCAA 59.830 45.455 0.00 0.00 0.00 4.08
499 558 1.762370 TCGAGGGCTATGAGATTTGCA 59.238 47.619 0.00 0.00 0.00 4.08
500 559 2.411904 CTCGAGGGCTATGAGATTTGC 58.588 52.381 3.91 0.00 31.31 3.68
501 560 2.411904 GCTCGAGGGCTATGAGATTTG 58.588 52.381 15.58 0.00 31.31 2.32
503 562 0.972883 GGCTCGAGGGCTATGAGATT 59.027 55.000 15.58 0.00 37.53 2.40
505 564 1.531840 GGGCTCGAGGGCTATGAGA 60.532 63.158 15.58 0.00 40.65 3.27
506 565 1.190833 ATGGGCTCGAGGGCTATGAG 61.191 60.000 15.58 0.00 39.99 2.90
507 566 0.114364 TATGGGCTCGAGGGCTATGA 59.886 55.000 15.58 0.00 41.43 2.15
513 585 2.650116 CCGGATATGGGCTCGAGGG 61.650 68.421 15.58 0.00 0.00 4.30
583 683 1.210155 GGCAGGTTGCGTGATGAAC 59.790 57.895 0.00 0.00 46.21 3.18
650 917 3.558411 GCGTCAGCAGATGCGTCC 61.558 66.667 7.61 0.00 45.92 4.79
733 1000 1.956170 CGTAGCGCAGGGCCTATTG 60.956 63.158 11.47 0.00 45.17 1.90
758 1034 0.183492 CGGGGATGGATGATGGTTGT 59.817 55.000 0.00 0.00 0.00 3.32
786 1062 4.539083 TCTTGTGCGTGCGTGGGT 62.539 61.111 0.00 0.00 0.00 4.51
832 1126 1.297364 CCGAGGTTTTAAGCGGGGA 59.703 57.895 0.00 0.00 40.08 4.81
894 1192 1.829096 TGGGAGTGGTGACGACGAA 60.829 57.895 0.00 0.00 0.00 3.85
897 1195 2.342648 GGTGGGAGTGGTGACGAC 59.657 66.667 0.00 0.00 0.00 4.34
898 1196 2.123208 TGGTGGGAGTGGTGACGA 60.123 61.111 0.00 0.00 0.00 4.20
899 1197 2.207229 TCTGGTGGGAGTGGTGACG 61.207 63.158 0.00 0.00 0.00 4.35
900 1198 1.371558 GTCTGGTGGGAGTGGTGAC 59.628 63.158 0.00 0.00 0.00 3.67
902 1200 2.750350 GGTCTGGTGGGAGTGGTG 59.250 66.667 0.00 0.00 0.00 4.17
918 1216 2.202570 GTCGACGGTGGATGACGG 60.203 66.667 0.00 0.00 0.00 4.79
920 1218 1.805945 GCAGTCGACGGTGGATGAC 60.806 63.158 17.03 0.00 0.00 3.06
960 1279 1.874019 CGTGCTGCGCTAGTAGTGG 60.874 63.158 9.73 0.00 32.36 4.00
962 1281 2.490217 CCGTGCTGCGCTAGTAGT 59.510 61.111 9.73 0.00 39.71 2.73
963 1282 2.956964 GCCGTGCTGCGCTAGTAG 60.957 66.667 9.73 0.00 39.71 2.57
1080 1438 1.139947 GGAGACGAGGAAGAAGGCG 59.860 63.158 0.00 0.00 0.00 5.52
1206 1594 1.908793 CTGGTCGAGGAGGGTGTGT 60.909 63.158 0.00 0.00 0.00 3.72
1341 1743 3.913548 ATCTGGAGTCGATTCGAGATG 57.086 47.619 26.87 3.55 39.98 2.90
1356 1758 4.392940 ACTCACAGAGGAACAAAATCTGG 58.607 43.478 6.41 0.00 43.81 3.86
1358 1760 7.283329 AGTAAACTCACAGAGGAACAAAATCT 58.717 34.615 0.00 0.00 33.35 2.40
1364 1766 6.015688 ACGATTAGTAAACTCACAGAGGAACA 60.016 38.462 0.00 0.00 33.35 3.18
1365 1767 6.388278 ACGATTAGTAAACTCACAGAGGAAC 58.612 40.000 0.00 0.00 33.35 3.62
1371 1773 4.031426 GCCGAACGATTAGTAAACTCACAG 59.969 45.833 0.00 0.00 0.00 3.66
1372 1774 3.922240 GCCGAACGATTAGTAAACTCACA 59.078 43.478 0.00 0.00 0.00 3.58
1373 1775 3.305361 GGCCGAACGATTAGTAAACTCAC 59.695 47.826 0.00 0.00 0.00 3.51
1374 1776 3.514645 GGCCGAACGATTAGTAAACTCA 58.485 45.455 0.00 0.00 0.00 3.41
1375 1777 2.533129 CGGCCGAACGATTAGTAAACTC 59.467 50.000 24.07 0.00 35.47 3.01
1376 1778 2.164219 TCGGCCGAACGATTAGTAAACT 59.836 45.455 28.99 0.00 38.06 2.66
1377 1779 2.529151 TCGGCCGAACGATTAGTAAAC 58.471 47.619 28.99 0.00 38.06 2.01
1378 1780 2.937469 TCGGCCGAACGATTAGTAAA 57.063 45.000 28.99 0.00 38.06 2.01
1389 1791 2.357638 TGCACGAAATCGGCCGAA 60.358 55.556 34.66 16.30 44.95 4.30
1393 1795 4.520846 CGCCTGCACGAAATCGGC 62.521 66.667 7.81 8.29 44.95 5.54
1394 1796 4.520846 GCGCCTGCACGAAATCGG 62.521 66.667 7.81 0.00 44.95 4.18
1395 1797 4.520846 GGCGCCTGCACGAAATCG 62.521 66.667 22.15 0.48 45.35 3.34
1396 1798 1.813753 TAGGCGCCTGCACGAAATC 60.814 57.895 38.98 0.68 45.35 2.17
1397 1799 2.106683 GTAGGCGCCTGCACGAAAT 61.107 57.895 38.98 12.13 45.35 2.17
1400 1802 4.735132 GTGTAGGCGCCTGCACGA 62.735 66.667 46.59 26.91 46.24 4.35
1756 2207 1.738099 CGGTGGCTGCTACTGACAC 60.738 63.158 18.94 7.47 39.99 3.67
1758 2209 1.446272 GACGGTGGCTGCTACTGAC 60.446 63.158 28.47 19.76 0.00 3.51
1799 2276 8.870075 AAGCTCCAGTTTATCTGAATTTTAGT 57.130 30.769 0.00 0.00 46.27 2.24
1832 2328 4.531912 CTGCGAGCTTGCATGGCG 62.532 66.667 28.61 13.52 45.26 5.69
1833 2329 4.189188 CCTGCGAGCTTGCATGGC 62.189 66.667 28.61 6.49 45.26 4.40
1834 2330 1.588824 TTTCCTGCGAGCTTGCATGG 61.589 55.000 28.61 27.30 45.26 3.66
1835 2331 0.179171 CTTTCCTGCGAGCTTGCATG 60.179 55.000 28.61 24.82 45.26 4.06
1836 2332 0.321919 TCTTTCCTGCGAGCTTGCAT 60.322 50.000 28.61 0.00 45.26 3.96
1837 2333 0.534877 TTCTTTCCTGCGAGCTTGCA 60.535 50.000 26.87 26.87 43.95 4.08
1838 2334 0.807496 ATTCTTTCCTGCGAGCTTGC 59.193 50.000 19.70 19.70 0.00 4.01
1839 2335 3.565905 AAATTCTTTCCTGCGAGCTTG 57.434 42.857 0.00 0.00 0.00 4.01
1840 2336 5.705609 TTAAAATTCTTTCCTGCGAGCTT 57.294 34.783 0.00 0.00 0.00 3.74
1841 2337 5.904362 ATTAAAATTCTTTCCTGCGAGCT 57.096 34.783 0.00 0.00 0.00 4.09
1842 2338 6.951256 AAATTAAAATTCTTTCCTGCGAGC 57.049 33.333 0.00 0.00 0.00 5.03
1843 2339 8.519492 TGAAAATTAAAATTCTTTCCTGCGAG 57.481 30.769 0.00 0.00 0.00 5.03
1844 2340 8.879342 TTGAAAATTAAAATTCTTTCCTGCGA 57.121 26.923 0.00 0.00 0.00 5.10
1845 2341 8.977505 TCTTGAAAATTAAAATTCTTTCCTGCG 58.022 29.630 5.52 0.00 0.00 5.18
1852 2348 9.487790 TGCGGAATCTTGAAAATTAAAATTCTT 57.512 25.926 5.52 0.00 0.00 2.52
1853 2349 9.143631 CTGCGGAATCTTGAAAATTAAAATTCT 57.856 29.630 0.00 0.00 0.00 2.40
1854 2350 7.899841 GCTGCGGAATCTTGAAAATTAAAATTC 59.100 33.333 0.00 0.00 0.00 2.17
1855 2351 7.387397 TGCTGCGGAATCTTGAAAATTAAAATT 59.613 29.630 0.00 0.00 0.00 1.82
1856 2352 6.873076 TGCTGCGGAATCTTGAAAATTAAAAT 59.127 30.769 0.00 0.00 0.00 1.82
1857 2353 6.145371 GTGCTGCGGAATCTTGAAAATTAAAA 59.855 34.615 0.00 0.00 0.00 1.52
1858 2354 5.633182 GTGCTGCGGAATCTTGAAAATTAAA 59.367 36.000 0.00 0.00 0.00 1.52
1859 2355 5.160641 GTGCTGCGGAATCTTGAAAATTAA 58.839 37.500 0.00 0.00 0.00 1.40
1860 2356 4.217334 TGTGCTGCGGAATCTTGAAAATTA 59.783 37.500 0.00 0.00 0.00 1.40
1861 2357 3.005684 TGTGCTGCGGAATCTTGAAAATT 59.994 39.130 0.00 0.00 0.00 1.82
1862 2358 2.557924 TGTGCTGCGGAATCTTGAAAAT 59.442 40.909 0.00 0.00 0.00 1.82
1863 2359 1.952990 TGTGCTGCGGAATCTTGAAAA 59.047 42.857 0.00 0.00 0.00 2.29
1864 2360 1.603456 TGTGCTGCGGAATCTTGAAA 58.397 45.000 0.00 0.00 0.00 2.69
1865 2361 1.603456 TTGTGCTGCGGAATCTTGAA 58.397 45.000 0.00 0.00 0.00 2.69
1875 2371 4.170062 CGCCTGGATTGTGCTGCG 62.170 66.667 0.00 0.00 35.81 5.18
1909 2405 9.388506 CTGGGATGAATGGATGAATTATACTAC 57.611 37.037 0.00 0.00 0.00 2.73
1911 2407 6.888632 GCTGGGATGAATGGATGAATTATACT 59.111 38.462 0.00 0.00 0.00 2.12
1920 2416 0.536687 AGCGCTGGGATGAATGGATG 60.537 55.000 10.39 0.00 0.00 3.51
1921 2417 0.184451 AAGCGCTGGGATGAATGGAT 59.816 50.000 12.58 0.00 0.00 3.41
1922 2418 0.034186 AAAGCGCTGGGATGAATGGA 60.034 50.000 12.58 0.00 0.00 3.41
1923 2419 0.383231 GAAAGCGCTGGGATGAATGG 59.617 55.000 12.58 0.00 0.00 3.16
1969 2467 1.409982 GCGCGTTTTGCACACAAAGT 61.410 50.000 8.43 0.00 46.08 2.66
1970 2468 1.269522 GCGCGTTTTGCACACAAAG 59.730 52.632 8.43 0.00 46.08 2.77
1971 2469 2.161486 GGCGCGTTTTGCACACAAA 61.161 52.632 8.43 0.00 46.97 2.83
1972 2470 2.580867 GGCGCGTTTTGCACACAA 60.581 55.556 8.43 0.00 46.97 3.33
1973 2471 3.748071 CTGGCGCGTTTTGCACACA 62.748 57.895 8.43 0.00 46.97 3.72
1974 2472 3.024043 CTGGCGCGTTTTGCACAC 61.024 61.111 8.43 0.00 46.97 3.82
1975 2473 4.921847 GCTGGCGCGTTTTGCACA 62.922 61.111 8.43 0.00 46.97 4.57
1999 2509 0.101759 GCGCCTCGGATTACACTACA 59.898 55.000 0.00 0.00 0.00 2.74
2034 2544 0.464452 CCGGCTGGGGAAAGTAGTAG 59.536 60.000 2.57 0.00 0.00 2.57
2035 2545 1.619807 GCCGGCTGGGGAAAGTAGTA 61.620 60.000 22.15 0.00 35.78 1.82
2036 2546 2.967946 GCCGGCTGGGGAAAGTAGT 61.968 63.158 22.15 0.00 35.78 2.73
2065 2576 3.150895 GAGCTGTCGTGTTGCTCG 58.849 61.111 0.00 0.00 42.70 5.03
2066 2577 3.150895 CGAGCTGTCGTGTTGCTC 58.849 61.111 0.00 0.00 46.73 4.26
2075 2586 3.414700 CCCGTTGCACGAGCTGTC 61.415 66.667 6.36 0.00 46.05 3.51
2137 2722 0.250166 GGTTAATCTATGCGCCCGGT 60.250 55.000 4.18 0.00 0.00 5.28
2140 2725 1.607148 GTTGGGTTAATCTATGCGCCC 59.393 52.381 4.18 0.00 36.73 6.13
2350 2944 1.954146 GGCGAAACGTGTCTCAGCA 60.954 57.895 3.82 0.00 0.00 4.41
2355 2957 2.235016 CGTGTGGCGAAACGTGTCT 61.235 57.895 2.87 0.00 44.77 3.41
2382 2984 0.105593 CCAGATCAGTCGACCATGGG 59.894 60.000 18.09 3.03 0.00 4.00
2383 2985 1.114627 TCCAGATCAGTCGACCATGG 58.885 55.000 13.01 11.19 0.00 3.66
2404 3006 3.296709 CTACAAGTCGGCCCGCACT 62.297 63.158 0.00 0.00 0.00 4.40
2409 3011 3.057174 CAGATATCTCTACAAGTCGGCCC 60.057 52.174 1.03 0.00 0.00 5.80
2430 3032 2.190313 GCAGCGACCATCCATCCA 59.810 61.111 0.00 0.00 0.00 3.41
2431 3033 2.969238 CGCAGCGACCATCCATCC 60.969 66.667 9.98 0.00 0.00 3.51
2432 3034 2.969238 CCGCAGCGACCATCCATC 60.969 66.667 18.75 0.00 0.00 3.51
2448 3050 2.493030 GTGCATGCACAGATGGCC 59.507 61.111 39.12 14.86 45.53 5.36
2456 3058 0.531657 TTAGCCCATTGTGCATGCAC 59.468 50.000 38.00 38.00 46.33 4.57
2458 3060 2.383368 TTTTAGCCCATTGTGCATGC 57.617 45.000 11.82 11.82 0.00 4.06
2462 3064 3.055891 AGGTCATTTTTAGCCCATTGTGC 60.056 43.478 0.00 0.00 0.00 4.57
2463 3065 4.220382 TGAGGTCATTTTTAGCCCATTGTG 59.780 41.667 0.00 0.00 0.00 3.33
2464 3066 4.220602 GTGAGGTCATTTTTAGCCCATTGT 59.779 41.667 0.00 0.00 0.00 2.71
2465 3067 4.220382 TGTGAGGTCATTTTTAGCCCATTG 59.780 41.667 0.00 0.00 0.00 2.82
2466 3068 4.415596 TGTGAGGTCATTTTTAGCCCATT 58.584 39.130 0.00 0.00 0.00 3.16
2467 3069 4.046286 TGTGAGGTCATTTTTAGCCCAT 57.954 40.909 0.00 0.00 0.00 4.00
2483 3085 1.923864 GTTTTTGGTTGCGGTTGTGAG 59.076 47.619 0.00 0.00 0.00 3.51
2502 3104 4.295119 GACAGTGACACGCCGGGT 62.295 66.667 2.18 0.00 0.00 5.28
2564 3166 2.887568 CCATCGGTCGAGCTGTGC 60.888 66.667 13.48 0.00 0.00 4.57
2575 3177 2.040544 ACGCCAAAAGAGCCATCGG 61.041 57.895 0.00 0.00 0.00 4.18
2579 3181 0.036732 AGATCACGCCAAAAGAGCCA 59.963 50.000 0.00 0.00 0.00 4.75
2582 3184 2.069273 ACGAAGATCACGCCAAAAGAG 58.931 47.619 11.20 0.00 0.00 2.85
2597 3199 2.359531 AGGAGATTCTTCCGCTACGAAG 59.640 50.000 0.00 0.00 42.29 3.79
2606 3208 2.424246 ACGAAGTCGAGGAGATTCTTCC 59.576 50.000 7.87 0.00 29.74 3.46
2688 3307 8.992835 AGTTAATTTACTAGTAACCCGACAAG 57.007 34.615 14.96 0.00 37.89 3.16
2715 3337 4.098807 ACCTACACAATTGACAAACAACCC 59.901 41.667 13.59 0.00 41.52 4.11
2734 3356 4.289410 GTGGGTTCCCTTTAACCTTACCTA 59.711 45.833 9.43 0.00 46.81 3.08
2845 3470 2.371259 GGGGGAGGAAGCAGAGACC 61.371 68.421 0.00 0.00 0.00 3.85
2877 3505 0.679505 ACAAACTACTGCTCGAGCCA 59.320 50.000 33.23 20.09 41.18 4.75
2879 3507 2.355717 AGACAAACTACTGCTCGAGC 57.644 50.000 30.42 30.42 42.50 5.03
2922 3552 4.428922 CACATGGCGCGTCGTGTG 62.429 66.667 41.05 41.05 44.76 3.82
3038 3675 4.473520 CCGCACGGCTCATCCCTT 62.474 66.667 0.00 0.00 0.00 3.95
3077 3716 8.550710 AAAACAGAGAGAAGAAGAAGATGATG 57.449 34.615 0.00 0.00 0.00 3.07
3078 3717 9.874205 CTAAAACAGAGAGAAGAAGAAGATGAT 57.126 33.333 0.00 0.00 0.00 2.45
3091 6996 7.442364 CCAGTGATTGAAACTAAAACAGAGAGA 59.558 37.037 0.00 0.00 0.00 3.10
3103 7008 3.131396 GTGACGTCCAGTGATTGAAACT 58.869 45.455 14.12 0.00 0.00 2.66
3143 7056 6.290540 CGTTCTTTTGACAATTCACAGTTTCG 60.291 38.462 0.00 0.00 0.00 3.46
3145 7058 6.616947 TCGTTCTTTTGACAATTCACAGTTT 58.383 32.000 0.00 0.00 0.00 2.66
3163 7076 1.535462 CAGTCCGCCAAATTTCGTTCT 59.465 47.619 0.00 0.00 0.00 3.01
3242 7155 1.004560 TTGACTCGCTGGCCTGAAG 60.005 57.895 14.77 11.85 0.00 3.02
3277 7190 8.378172 TCTCAAGTCACTTTTACCAACTATTG 57.622 34.615 0.00 0.00 0.00 1.90
3317 7233 1.207089 CAAGGTCTAGATCGTTGGGCA 59.793 52.381 14.62 0.00 0.00 5.36
3342 7261 5.644188 TCTTCAAAGTCTTCCATTTCCCAT 58.356 37.500 0.00 0.00 0.00 4.00
3343 7262 5.060427 TCTTCAAAGTCTTCCATTTCCCA 57.940 39.130 0.00 0.00 0.00 4.37
3372 7293 8.703378 ATCAAAGTCCTCTTTCTTTTCTCAAT 57.297 30.769 0.00 0.00 41.31 2.57
3373 7294 8.525290 AATCAAAGTCCTCTTTCTTTTCTCAA 57.475 30.769 0.00 0.00 41.31 3.02
3374 7295 8.408601 CAAATCAAAGTCCTCTTTCTTTTCTCA 58.591 33.333 0.00 0.00 41.31 3.27
3377 7298 8.811378 CAACAAATCAAAGTCCTCTTTCTTTTC 58.189 33.333 0.00 0.00 41.31 2.29
3380 7301 6.097412 AGCAACAAATCAAAGTCCTCTTTCTT 59.903 34.615 0.00 0.00 41.31 2.52
3381 7302 5.595952 AGCAACAAATCAAAGTCCTCTTTCT 59.404 36.000 0.00 0.00 41.31 2.52
3382 7303 5.836347 AGCAACAAATCAAAGTCCTCTTTC 58.164 37.500 0.00 0.00 41.31 2.62
3383 7304 5.859205 AGCAACAAATCAAAGTCCTCTTT 57.141 34.783 0.00 0.00 43.66 2.52
3432 7353 2.091166 TGATATGCTGGCCTTTTCCCAT 60.091 45.455 3.32 0.11 0.00 4.00
3434 7355 1.683385 GTGATATGCTGGCCTTTTCCC 59.317 52.381 3.32 0.00 0.00 3.97
3437 7358 2.092968 TCTCGTGATATGCTGGCCTTTT 60.093 45.455 3.32 0.00 0.00 2.27
3448 7370 1.274728 GCAGCCATCCTCTCGTGATAT 59.725 52.381 0.00 0.00 0.00 1.63
3473 7395 6.109359 AGAAAAAGAACACTATCCAGATCGG 58.891 40.000 0.00 0.00 0.00 4.18
3485 7407 4.974275 GGGTTCGCTAAAGAAAAAGAACAC 59.026 41.667 8.14 1.07 39.53 3.32
3527 7449 3.203086 TTGCAATGACGGCCCCTGA 62.203 57.895 0.00 0.00 0.00 3.86
3529 7451 2.676471 GTTGCAATGACGGCCCCT 60.676 61.111 0.59 0.00 0.00 4.79
3535 7457 1.850377 TTGCCTTTGTTGCAATGACG 58.150 45.000 0.59 0.00 43.36 4.35
3540 7462 6.690194 AAAATATGTTTGCCTTTGTTGCAA 57.310 29.167 0.00 0.00 46.30 4.08
3541 7463 6.989169 ACTAAAATATGTTTGCCTTTGTTGCA 59.011 30.769 0.00 0.00 36.84 4.08
3542 7464 7.420184 ACTAAAATATGTTTGCCTTTGTTGC 57.580 32.000 0.00 0.00 0.00 4.17
3579 7523 9.569167 TCTTCTAATTTCGAGTAGTACAACATG 57.431 33.333 2.52 0.00 0.00 3.21
3581 7525 9.970395 TTTCTTCTAATTTCGAGTAGTACAACA 57.030 29.630 2.52 0.00 0.00 3.33
3619 7732 6.819649 ACGGAAGGATCACGTTAATTATGAAA 59.180 34.615 0.00 0.00 37.61 2.69
3686 7804 8.221944 TCTTTCTTGTACTCATCCCCTTAAAAA 58.778 33.333 0.00 0.00 0.00 1.94
3695 7813 8.841300 ACTTTCTTTTCTTTCTTGTACTCATCC 58.159 33.333 0.00 0.00 0.00 3.51
3704 7822 7.011828 TCGGTGTACTTTCTTTTCTTTCTTG 57.988 36.000 0.00 0.00 0.00 3.02
3705 7823 7.803279 ATCGGTGTACTTTCTTTTCTTTCTT 57.197 32.000 0.00 0.00 0.00 2.52
3707 7825 7.378728 CCAAATCGGTGTACTTTCTTTTCTTTC 59.621 37.037 0.00 0.00 0.00 2.62
3710 7828 6.313744 CCAAATCGGTGTACTTTCTTTTCT 57.686 37.500 0.00 0.00 0.00 2.52
3725 7843 7.538575 AGTTGAAATAATCTGAACCAAATCGG 58.461 34.615 0.00 0.00 42.50 4.18
3726 7844 8.970691 AAGTTGAAATAATCTGAACCAAATCG 57.029 30.769 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.