Multiple sequence alignment - TraesCS5A01G514500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G514500 chr5A 100.000 4622 0 0 1 4622 678085778 678081157 0.000000e+00 8536.0
1 TraesCS5A01G514500 chr5A 96.791 748 23 1 3876 4622 174293059 174292312 0.000000e+00 1247.0
2 TraesCS5A01G514500 chr5A 84.881 1217 149 16 2414 3624 691813080 691814267 0.000000e+00 1195.0
3 TraesCS5A01G514500 chr5A 81.460 1370 180 51 997 2339 691811758 691813080 0.000000e+00 1055.0
4 TraesCS5A01G514500 chr5A 80.453 353 21 23 3528 3875 677952080 677951771 4.650000e-55 226.0
5 TraesCS5A01G514500 chr5A 89.286 56 6 0 156 211 454439033 454439088 2.310000e-08 71.3
6 TraesCS5A01G514500 chr4D 93.203 2957 159 15 685 3630 497664817 497667742 0.000000e+00 4309.0
7 TraesCS5A01G514500 chr4D 92.742 248 17 1 3384 3630 497696001 497696248 1.580000e-94 357.0
8 TraesCS5A01G514500 chr4D 82.787 366 24 19 3518 3878 497649170 497648839 1.630000e-74 291.0
9 TraesCS5A01G514500 chr4D 89.404 151 14 2 347 497 497664387 497664535 6.100000e-44 189.0
10 TraesCS5A01G514500 chr4D 94.915 59 3 0 3820 3878 497657488 497657430 4.920000e-15 93.5
11 TraesCS5A01G514500 chr4B 89.523 3398 241 43 510 3875 638985515 638988829 0.000000e+00 4196.0
12 TraesCS5A01G514500 chr4B 86.517 1068 130 7 2414 3477 654130549 654131606 0.000000e+00 1162.0
13 TraesCS5A01G514500 chr4B 85.620 1064 116 18 2414 3473 654125314 654126344 0.000000e+00 1083.0
14 TraesCS5A01G514500 chr4B 81.254 1403 194 42 975 2339 654123943 654125314 0.000000e+00 1070.0
15 TraesCS5A01G514500 chr4B 88.341 832 62 21 3032 3849 638815404 638814594 0.000000e+00 966.0
16 TraesCS5A01G514500 chr4B 79.899 592 103 9 1036 1616 654128698 654129284 1.990000e-113 420.0
17 TraesCS5A01G514500 chr3D 96.510 745 26 0 3878 4622 515229616 515228872 0.000000e+00 1232.0
18 TraesCS5A01G514500 chr3D 96.042 758 29 1 3866 4622 589558070 589558827 0.000000e+00 1232.0
19 TraesCS5A01G514500 chr7D 96.252 747 27 1 3877 4622 460053928 460054674 0.000000e+00 1223.0
20 TraesCS5A01G514500 chr7D 82.007 289 46 6 2672 2957 25522958 25522673 1.660000e-59 241.0
21 TraesCS5A01G514500 chr7D 84.444 90 13 1 170 258 634736059 634736148 2.290000e-13 87.9
22 TraesCS5A01G514500 chr6D 96.247 746 27 1 3878 4622 16202539 16201794 0.000000e+00 1221.0
23 TraesCS5A01G514500 chr6B 95.984 747 26 4 3878 4622 705610126 705610870 0.000000e+00 1210.0
24 TraesCS5A01G514500 chr1B 95.582 747 31 2 3877 4622 673882835 673882090 0.000000e+00 1195.0
25 TraesCS5A01G514500 chr5B 95.467 750 31 3 3876 4622 280594015 280594764 0.000000e+00 1194.0
26 TraesCS5A01G514500 chr2A 95.181 747 33 3 3877 4622 14453052 14452308 0.000000e+00 1177.0
27 TraesCS5A01G514500 chr2D 82.221 1333 198 30 1028 2339 602007192 602008506 0.000000e+00 1112.0
28 TraesCS5A01G514500 chr2D 86.220 1045 123 9 2434 3474 602008526 602009553 0.000000e+00 1112.0
29 TraesCS5A01G514500 chr2B 87.110 993 110 6 2434 3423 732223535 732224512 0.000000e+00 1109.0
30 TraesCS5A01G514500 chr2B 81.804 1319 204 27 1040 2339 732222214 732223515 0.000000e+00 1074.0
31 TraesCS5A01G514500 chr4A 84.081 936 123 14 2495 3429 731003743 731002833 0.000000e+00 880.0
32 TraesCS5A01G514500 chr4A 82.007 289 46 6 2672 2957 709977810 709977525 1.660000e-59 241.0
33 TraesCS5A01G514500 chr3B 74.710 431 89 17 3001 3421 142722315 142721895 1.710000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G514500 chr5A 678081157 678085778 4621 True 8536.00 8536 100.0000 1 4622 1 chr5A.!!$R3 4621
1 TraesCS5A01G514500 chr5A 174292312 174293059 747 True 1247.00 1247 96.7910 3876 4622 1 chr5A.!!$R1 746
2 TraesCS5A01G514500 chr5A 691811758 691814267 2509 False 1125.00 1195 83.1705 997 3624 2 chr5A.!!$F2 2627
3 TraesCS5A01G514500 chr4D 497664387 497667742 3355 False 2249.00 4309 91.3035 347 3630 2 chr4D.!!$F2 3283
4 TraesCS5A01G514500 chr4B 638985515 638988829 3314 False 4196.00 4196 89.5230 510 3875 1 chr4B.!!$F1 3365
5 TraesCS5A01G514500 chr4B 638814594 638815404 810 True 966.00 966 88.3410 3032 3849 1 chr4B.!!$R1 817
6 TraesCS5A01G514500 chr4B 654123943 654131606 7663 False 933.75 1162 83.3225 975 3477 4 chr4B.!!$F2 2502
7 TraesCS5A01G514500 chr3D 515228872 515229616 744 True 1232.00 1232 96.5100 3878 4622 1 chr3D.!!$R1 744
8 TraesCS5A01G514500 chr3D 589558070 589558827 757 False 1232.00 1232 96.0420 3866 4622 1 chr3D.!!$F1 756
9 TraesCS5A01G514500 chr7D 460053928 460054674 746 False 1223.00 1223 96.2520 3877 4622 1 chr7D.!!$F1 745
10 TraesCS5A01G514500 chr6D 16201794 16202539 745 True 1221.00 1221 96.2470 3878 4622 1 chr6D.!!$R1 744
11 TraesCS5A01G514500 chr6B 705610126 705610870 744 False 1210.00 1210 95.9840 3878 4622 1 chr6B.!!$F1 744
12 TraesCS5A01G514500 chr1B 673882090 673882835 745 True 1195.00 1195 95.5820 3877 4622 1 chr1B.!!$R1 745
13 TraesCS5A01G514500 chr5B 280594015 280594764 749 False 1194.00 1194 95.4670 3876 4622 1 chr5B.!!$F1 746
14 TraesCS5A01G514500 chr2A 14452308 14453052 744 True 1177.00 1177 95.1810 3877 4622 1 chr2A.!!$R1 745
15 TraesCS5A01G514500 chr2D 602007192 602009553 2361 False 1112.00 1112 84.2205 1028 3474 2 chr2D.!!$F1 2446
16 TraesCS5A01G514500 chr2B 732222214 732224512 2298 False 1091.50 1109 84.4570 1040 3423 2 chr2B.!!$F1 2383
17 TraesCS5A01G514500 chr4A 731002833 731003743 910 True 880.00 880 84.0810 2495 3429 1 chr4A.!!$R2 934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
801 907 0.107017 CCAATCCCATCCTTGTCGCT 60.107 55.0 0.00 0.0 0.00 4.93 F
1095 1205 0.250513 CCTTCTCCCCGGACTTCAAG 59.749 60.0 0.73 0.0 0.00 3.02 F
2176 2353 1.229428 CAGGTCGAAGAAAAGCAGCA 58.771 50.0 0.00 0.0 39.69 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 2341 0.032540 CCGCCTTTGCTGCTTTTCTT 59.967 50.0 0.00 0.00 34.43 2.52 R
2266 2443 0.498927 GTCGCGAGCACGATTATGAC 59.501 55.0 10.24 2.93 45.06 3.06 R
3760 9191 0.033796 ACAATGGTGCCCAGATGAGG 60.034 55.0 13.26 0.00 36.75 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.643379 GACAAGGAACCATGCAATTAAGA 57.357 39.130 0.00 0.00 0.00 2.10
23 24 6.212888 GACAAGGAACCATGCAATTAAGAT 57.787 37.500 0.00 0.00 0.00 2.40
24 25 7.333528 GACAAGGAACCATGCAATTAAGATA 57.666 36.000 0.00 0.00 0.00 1.98
25 26 7.902920 ACAAGGAACCATGCAATTAAGATAT 57.097 32.000 0.00 0.00 0.00 1.63
26 27 8.995027 ACAAGGAACCATGCAATTAAGATATA 57.005 30.769 0.00 0.00 0.00 0.86
27 28 9.420118 ACAAGGAACCATGCAATTAAGATATAA 57.580 29.630 0.00 0.00 0.00 0.98
41 42 9.884465 AATTAAGATATAAAAAGTCTCATGCGC 57.116 29.630 0.00 0.00 0.00 6.09
42 43 5.931441 AGATATAAAAAGTCTCATGCGCC 57.069 39.130 4.18 0.00 0.00 6.53
43 44 5.368145 AGATATAAAAAGTCTCATGCGCCA 58.632 37.500 4.18 0.00 0.00 5.69
44 45 6.000219 AGATATAAAAAGTCTCATGCGCCAT 59.000 36.000 4.18 0.00 0.00 4.40
45 46 4.989279 ATAAAAAGTCTCATGCGCCATT 57.011 36.364 4.18 0.00 0.00 3.16
46 47 7.661437 AGATATAAAAAGTCTCATGCGCCATTA 59.339 33.333 4.18 0.00 0.00 1.90
47 48 4.782019 AAAAAGTCTCATGCGCCATTAA 57.218 36.364 4.18 0.00 0.00 1.40
48 49 4.989279 AAAAGTCTCATGCGCCATTAAT 57.011 36.364 4.18 0.00 0.00 1.40
49 50 3.976793 AAGTCTCATGCGCCATTAATG 57.023 42.857 4.18 8.58 0.00 1.90
70 71 5.622346 TGGTGTATAAGACCATATGCACA 57.378 39.130 14.47 0.00 45.26 4.57
71 72 6.186420 TGGTGTATAAGACCATATGCACAT 57.814 37.500 14.47 0.00 45.26 3.21
72 73 5.997129 TGGTGTATAAGACCATATGCACATG 59.003 40.000 14.47 0.00 45.26 3.21
73 74 5.997746 GGTGTATAAGACCATATGCACATGT 59.002 40.000 3.92 0.00 45.26 3.21
74 75 6.486657 GGTGTATAAGACCATATGCACATGTT 59.513 38.462 3.92 0.00 45.26 2.71
75 76 7.659799 GGTGTATAAGACCATATGCACATGTTA 59.340 37.037 3.92 0.00 45.26 2.41
76 77 9.051679 GTGTATAAGACCATATGCACATGTTAA 57.948 33.333 3.92 0.00 43.86 2.01
77 78 9.791801 TGTATAAGACCATATGCACATGTTAAT 57.208 29.630 3.92 0.00 0.00 1.40
81 82 7.886629 AGACCATATGCACATGTTAATTTCT 57.113 32.000 3.92 0.00 0.00 2.52
82 83 8.978874 AGACCATATGCACATGTTAATTTCTA 57.021 30.769 3.92 0.00 0.00 2.10
83 84 9.407380 AGACCATATGCACATGTTAATTTCTAA 57.593 29.630 3.92 0.00 0.00 2.10
112 113 6.446781 AAAAATGATGCATGGTCTCACTAG 57.553 37.500 2.46 0.00 0.00 2.57
113 114 4.767578 AATGATGCATGGTCTCACTAGT 57.232 40.909 2.46 0.00 0.00 2.57
114 115 3.531934 TGATGCATGGTCTCACTAGTG 57.468 47.619 17.17 17.17 0.00 2.74
115 116 2.169144 TGATGCATGGTCTCACTAGTGG 59.831 50.000 22.48 13.18 0.00 4.00
116 117 0.250234 TGCATGGTCTCACTAGTGGC 59.750 55.000 22.48 15.62 0.00 5.01
117 118 0.250234 GCATGGTCTCACTAGTGGCA 59.750 55.000 22.48 6.80 0.00 4.92
118 119 1.741732 GCATGGTCTCACTAGTGGCAG 60.742 57.143 22.48 13.50 0.00 4.85
119 120 0.539051 ATGGTCTCACTAGTGGCAGC 59.461 55.000 22.48 17.56 0.00 5.25
120 121 0.542938 TGGTCTCACTAGTGGCAGCT 60.543 55.000 22.48 0.00 0.00 4.24
121 122 0.610687 GGTCTCACTAGTGGCAGCTT 59.389 55.000 22.48 0.00 0.00 3.74
122 123 1.002544 GGTCTCACTAGTGGCAGCTTT 59.997 52.381 22.48 0.00 0.00 3.51
123 124 2.072298 GTCTCACTAGTGGCAGCTTTG 58.928 52.381 22.48 3.97 0.00 2.77
124 125 1.970640 TCTCACTAGTGGCAGCTTTGA 59.029 47.619 22.48 5.99 0.00 2.69
125 126 2.368548 TCTCACTAGTGGCAGCTTTGAA 59.631 45.455 22.48 0.00 0.00 2.69
126 127 3.141398 CTCACTAGTGGCAGCTTTGAAA 58.859 45.455 22.48 0.00 0.00 2.69
127 128 3.550820 TCACTAGTGGCAGCTTTGAAAA 58.449 40.909 22.48 0.00 0.00 2.29
128 129 4.144297 TCACTAGTGGCAGCTTTGAAAAT 58.856 39.130 22.48 0.00 0.00 1.82
129 130 4.216257 TCACTAGTGGCAGCTTTGAAAATC 59.784 41.667 22.48 0.00 0.00 2.17
130 131 4.022935 CACTAGTGGCAGCTTTGAAAATCA 60.023 41.667 15.49 0.00 0.00 2.57
131 132 4.584325 ACTAGTGGCAGCTTTGAAAATCAA 59.416 37.500 0.00 0.00 34.03 2.57
132 133 4.612264 AGTGGCAGCTTTGAAAATCAAT 57.388 36.364 0.00 0.00 36.11 2.57
133 134 4.964593 AGTGGCAGCTTTGAAAATCAATT 58.035 34.783 0.00 0.00 36.11 2.32
134 135 4.753107 AGTGGCAGCTTTGAAAATCAATTG 59.247 37.500 0.00 0.00 36.11 2.32
135 136 4.066490 TGGCAGCTTTGAAAATCAATTGG 58.934 39.130 5.42 0.00 36.11 3.16
136 137 4.202336 TGGCAGCTTTGAAAATCAATTGGA 60.202 37.500 5.42 0.00 36.11 3.53
137 138 4.939439 GGCAGCTTTGAAAATCAATTGGAT 59.061 37.500 5.42 0.00 36.11 3.41
138 139 6.108015 GGCAGCTTTGAAAATCAATTGGATA 58.892 36.000 5.42 0.00 36.11 2.59
139 140 6.594937 GGCAGCTTTGAAAATCAATTGGATAA 59.405 34.615 5.42 0.00 36.11 1.75
140 141 7.119553 GGCAGCTTTGAAAATCAATTGGATAAA 59.880 33.333 5.42 0.00 36.11 1.40
141 142 8.505625 GCAGCTTTGAAAATCAATTGGATAAAA 58.494 29.630 5.42 0.00 36.11 1.52
177 178 5.914898 AGCTTTGTGACATATTTTACCCC 57.085 39.130 0.00 0.00 0.00 4.95
178 179 5.329399 AGCTTTGTGACATATTTTACCCCA 58.671 37.500 0.00 0.00 0.00 4.96
179 180 5.957774 AGCTTTGTGACATATTTTACCCCAT 59.042 36.000 0.00 0.00 0.00 4.00
180 181 6.440328 AGCTTTGTGACATATTTTACCCCATT 59.560 34.615 0.00 0.00 0.00 3.16
181 182 7.038373 AGCTTTGTGACATATTTTACCCCATTT 60.038 33.333 0.00 0.00 0.00 2.32
182 183 7.606073 GCTTTGTGACATATTTTACCCCATTTT 59.394 33.333 0.00 0.00 0.00 1.82
183 184 8.839310 TTTGTGACATATTTTACCCCATTTTG 57.161 30.769 0.00 0.00 0.00 2.44
184 185 7.782897 TGTGACATATTTTACCCCATTTTGA 57.217 32.000 0.00 0.00 0.00 2.69
185 186 7.835822 TGTGACATATTTTACCCCATTTTGAG 58.164 34.615 0.00 0.00 0.00 3.02
186 187 7.671819 TGTGACATATTTTACCCCATTTTGAGA 59.328 33.333 0.00 0.00 0.00 3.27
187 188 8.527810 GTGACATATTTTACCCCATTTTGAGAA 58.472 33.333 0.00 0.00 0.00 2.87
188 189 9.094578 TGACATATTTTACCCCATTTTGAGAAA 57.905 29.630 0.00 0.00 0.00 2.52
189 190 9.936759 GACATATTTTACCCCATTTTGAGAAAA 57.063 29.630 0.00 0.00 34.41 2.29
194 195 7.503521 TTTACCCCATTTTGAGAAAATTTGC 57.496 32.000 0.00 0.00 38.97 3.68
195 196 5.046288 ACCCCATTTTGAGAAAATTTGCA 57.954 34.783 0.00 0.00 38.97 4.08
196 197 5.444176 ACCCCATTTTGAGAAAATTTGCAA 58.556 33.333 0.00 0.00 38.97 4.08
197 198 6.069994 ACCCCATTTTGAGAAAATTTGCAAT 58.930 32.000 0.00 0.00 38.97 3.56
198 199 6.550481 ACCCCATTTTGAGAAAATTTGCAATT 59.450 30.769 0.00 0.00 38.97 2.32
199 200 7.069702 ACCCCATTTTGAGAAAATTTGCAATTT 59.930 29.630 0.00 0.00 38.97 1.82
200 201 8.574737 CCCCATTTTGAGAAAATTTGCAATTTA 58.425 29.630 0.00 0.00 38.97 1.40
206 207 8.785329 TTGAGAAAATTTGCAATTTATACCCC 57.215 30.769 0.00 0.00 0.00 4.95
207 208 7.911651 TGAGAAAATTTGCAATTTATACCCCA 58.088 30.769 0.00 0.00 0.00 4.96
208 209 8.378565 TGAGAAAATTTGCAATTTATACCCCAA 58.621 29.630 0.00 0.00 0.00 4.12
209 210 9.394767 GAGAAAATTTGCAATTTATACCCCAAT 57.605 29.630 0.00 0.00 0.00 3.16
210 211 9.752228 AGAAAATTTGCAATTTATACCCCAATT 57.248 25.926 0.00 0.00 0.00 2.32
211 212 9.786105 GAAAATTTGCAATTTATACCCCAATTG 57.214 29.630 0.00 0.00 41.47 2.32
212 213 9.525826 AAAATTTGCAATTTATACCCCAATTGA 57.474 25.926 7.12 0.00 41.18 2.57
213 214 9.697990 AAATTTGCAATTTATACCCCAATTGAT 57.302 25.926 7.12 0.00 41.18 2.57
214 215 8.907222 ATTTGCAATTTATACCCCAATTGATC 57.093 30.769 7.12 0.00 41.18 2.92
215 216 7.429374 TTGCAATTTATACCCCAATTGATCA 57.571 32.000 7.12 0.00 41.18 2.92
216 217 7.429374 TGCAATTTATACCCCAATTGATCAA 57.571 32.000 11.26 11.26 41.18 2.57
217 218 7.855375 TGCAATTTATACCCCAATTGATCAAA 58.145 30.769 13.09 0.00 41.18 2.69
218 219 7.986320 TGCAATTTATACCCCAATTGATCAAAG 59.014 33.333 13.09 8.19 41.18 2.77
219 220 7.986889 GCAATTTATACCCCAATTGATCAAAGT 59.013 33.333 13.09 7.78 41.18 2.66
220 221 9.889128 CAATTTATACCCCAATTGATCAAAGTT 57.111 29.630 13.09 0.00 41.18 2.66
221 222 9.889128 AATTTATACCCCAATTGATCAAAGTTG 57.111 29.630 13.09 12.93 0.00 3.16
222 223 8.429237 TTTATACCCCAATTGATCAAAGTTGT 57.571 30.769 13.09 8.88 0.00 3.32
223 224 4.605640 ACCCCAATTGATCAAAGTTGTG 57.394 40.909 13.09 4.86 0.00 3.33
224 225 3.244181 ACCCCAATTGATCAAAGTTGTGC 60.244 43.478 13.09 0.00 0.00 4.57
225 226 3.328505 CCCAATTGATCAAAGTTGTGCC 58.671 45.455 13.09 0.00 0.00 5.01
226 227 3.244146 CCCAATTGATCAAAGTTGTGCCA 60.244 43.478 13.09 0.00 0.00 4.92
227 228 3.742369 CCAATTGATCAAAGTTGTGCCAC 59.258 43.478 13.09 0.00 0.00 5.01
228 229 4.370049 CAATTGATCAAAGTTGTGCCACA 58.630 39.130 13.09 0.00 0.00 4.17
229 230 4.877378 ATTGATCAAAGTTGTGCCACAT 57.123 36.364 13.09 0.00 0.00 3.21
230 231 4.669206 TTGATCAAAGTTGTGCCACATT 57.331 36.364 5.45 0.00 0.00 2.71
231 232 4.669206 TGATCAAAGTTGTGCCACATTT 57.331 36.364 0.00 0.00 0.00 2.32
232 233 5.021033 TGATCAAAGTTGTGCCACATTTT 57.979 34.783 0.00 0.02 0.00 1.82
233 234 6.154203 TGATCAAAGTTGTGCCACATTTTA 57.846 33.333 0.00 0.00 0.00 1.52
234 235 5.982516 TGATCAAAGTTGTGCCACATTTTAC 59.017 36.000 0.00 0.00 0.00 2.01
235 236 4.355437 TCAAAGTTGTGCCACATTTTACG 58.645 39.130 0.00 0.00 0.00 3.18
236 237 2.415697 AGTTGTGCCACATTTTACGC 57.584 45.000 0.00 0.00 0.00 4.42
237 238 1.678627 AGTTGTGCCACATTTTACGCA 59.321 42.857 0.00 0.00 0.00 5.24
238 239 2.099921 AGTTGTGCCACATTTTACGCAA 59.900 40.909 0.00 0.00 32.04 4.85
239 240 3.056304 GTTGTGCCACATTTTACGCAAT 58.944 40.909 0.00 0.00 35.26 3.56
240 241 3.377346 TGTGCCACATTTTACGCAATT 57.623 38.095 0.00 0.00 32.04 2.32
241 242 3.055591 TGTGCCACATTTTACGCAATTG 58.944 40.909 0.00 0.00 32.04 2.32
242 243 2.064762 TGCCACATTTTACGCAATTGC 58.935 42.857 20.76 20.76 37.78 3.56
243 244 2.064762 GCCACATTTTACGCAATTGCA 58.935 42.857 28.77 10.50 42.21 4.08
244 245 2.672381 GCCACATTTTACGCAATTGCAT 59.328 40.909 28.77 18.06 42.21 3.96
245 246 3.124976 GCCACATTTTACGCAATTGCATT 59.875 39.130 28.77 17.59 42.21 3.56
246 247 4.378253 GCCACATTTTACGCAATTGCATTT 60.378 37.500 28.77 15.14 42.21 2.32
247 248 5.687828 CCACATTTTACGCAATTGCATTTT 58.312 33.333 28.77 12.74 42.21 1.82
248 249 6.141462 CCACATTTTACGCAATTGCATTTTT 58.859 32.000 28.77 10.38 42.21 1.94
249 250 6.302786 CCACATTTTACGCAATTGCATTTTTC 59.697 34.615 28.77 0.00 42.21 2.29
250 251 7.070798 CACATTTTACGCAATTGCATTTTTCT 58.929 30.769 28.77 5.91 42.21 2.52
251 252 7.266756 CACATTTTACGCAATTGCATTTTTCTC 59.733 33.333 28.77 0.00 42.21 2.87
252 253 5.837586 TTTACGCAATTGCATTTTTCTCC 57.162 34.783 28.77 0.00 42.21 3.71
253 254 3.383620 ACGCAATTGCATTTTTCTCCA 57.616 38.095 28.77 0.00 42.21 3.86
254 255 3.726607 ACGCAATTGCATTTTTCTCCAA 58.273 36.364 28.77 0.00 42.21 3.53
255 256 4.317488 ACGCAATTGCATTTTTCTCCAAT 58.683 34.783 28.77 0.00 42.21 3.16
256 257 4.756135 ACGCAATTGCATTTTTCTCCAATT 59.244 33.333 28.77 0.00 42.21 2.32
257 258 5.239087 ACGCAATTGCATTTTTCTCCAATTT 59.761 32.000 28.77 0.00 42.21 1.82
258 259 5.791480 CGCAATTGCATTTTTCTCCAATTTC 59.209 36.000 28.77 0.00 42.21 2.17
259 260 6.347888 CGCAATTGCATTTTTCTCCAATTTCT 60.348 34.615 28.77 0.00 42.21 2.52
260 261 7.364970 GCAATTGCATTTTTCTCCAATTTCTT 58.635 30.769 25.36 0.00 41.59 2.52
261 262 7.863877 GCAATTGCATTTTTCTCCAATTTCTTT 59.136 29.630 25.36 0.00 41.59 2.52
262 263 9.738832 CAATTGCATTTTTCTCCAATTTCTTTT 57.261 25.926 0.00 0.00 36.17 2.27
283 284 3.828875 TTTTTGCGGGGACATTTTTCT 57.171 38.095 0.00 0.00 0.00 2.52
284 285 3.378911 TTTTGCGGGGACATTTTTCTC 57.621 42.857 0.00 0.00 0.00 2.87
285 286 1.253100 TTGCGGGGACATTTTTCTCC 58.747 50.000 0.00 0.00 31.94 3.71
286 287 0.111446 TGCGGGGACATTTTTCTCCA 59.889 50.000 0.00 0.00 35.60 3.86
287 288 1.253100 GCGGGGACATTTTTCTCCAA 58.747 50.000 0.00 0.00 35.60 3.53
288 289 1.824852 GCGGGGACATTTTTCTCCAAT 59.175 47.619 0.00 0.00 35.60 3.16
289 290 2.233676 GCGGGGACATTTTTCTCCAATT 59.766 45.455 0.00 0.00 35.60 2.32
290 291 3.306710 GCGGGGACATTTTTCTCCAATTT 60.307 43.478 0.00 0.00 35.60 1.82
291 292 4.494484 CGGGGACATTTTTCTCCAATTTC 58.506 43.478 0.00 0.00 35.60 2.17
292 293 4.494484 GGGGACATTTTTCTCCAATTTCG 58.506 43.478 0.00 0.00 35.97 3.46
293 294 4.021456 GGGGACATTTTTCTCCAATTTCGT 60.021 41.667 0.00 0.00 35.97 3.85
294 295 4.923281 GGGACATTTTTCTCCAATTTCGTG 59.077 41.667 0.00 0.00 0.00 4.35
295 296 4.385748 GGACATTTTTCTCCAATTTCGTGC 59.614 41.667 0.00 0.00 0.00 5.34
296 297 5.200368 ACATTTTTCTCCAATTTCGTGCT 57.800 34.783 0.00 0.00 0.00 4.40
297 298 6.325919 ACATTTTTCTCCAATTTCGTGCTA 57.674 33.333 0.00 0.00 0.00 3.49
298 299 6.744112 ACATTTTTCTCCAATTTCGTGCTAA 58.256 32.000 0.00 0.00 0.00 3.09
299 300 6.863126 ACATTTTTCTCCAATTTCGTGCTAAG 59.137 34.615 0.00 0.00 0.00 2.18
300 301 6.385649 TTTTTCTCCAATTTCGTGCTAAGT 57.614 33.333 0.00 0.00 0.00 2.24
301 302 7.499321 TTTTTCTCCAATTTCGTGCTAAGTA 57.501 32.000 0.00 0.00 0.00 2.24
302 303 6.721571 TTTCTCCAATTTCGTGCTAAGTAG 57.278 37.500 0.00 0.00 0.00 2.57
303 304 5.654603 TCTCCAATTTCGTGCTAAGTAGA 57.345 39.130 0.00 0.00 0.00 2.59
304 305 6.222038 TCTCCAATTTCGTGCTAAGTAGAT 57.778 37.500 0.00 0.00 0.00 1.98
305 306 6.042777 TCTCCAATTTCGTGCTAAGTAGATG 58.957 40.000 0.00 0.00 0.00 2.90
306 307 5.730550 TCCAATTTCGTGCTAAGTAGATGT 58.269 37.500 0.00 0.00 0.00 3.06
307 308 5.580691 TCCAATTTCGTGCTAAGTAGATGTG 59.419 40.000 0.00 0.00 0.00 3.21
308 309 5.258622 CAATTTCGTGCTAAGTAGATGTGC 58.741 41.667 0.00 0.00 0.00 4.57
309 310 2.579207 TCGTGCTAAGTAGATGTGCC 57.421 50.000 0.00 0.00 0.00 5.01
310 311 1.822371 TCGTGCTAAGTAGATGTGCCA 59.178 47.619 0.00 0.00 0.00 4.92
311 312 2.430694 TCGTGCTAAGTAGATGTGCCAT 59.569 45.455 0.00 0.00 0.00 4.40
312 313 2.541346 CGTGCTAAGTAGATGTGCCATG 59.459 50.000 0.00 0.00 0.00 3.66
313 314 3.535561 GTGCTAAGTAGATGTGCCATGT 58.464 45.455 0.00 0.00 0.00 3.21
314 315 4.693283 GTGCTAAGTAGATGTGCCATGTA 58.307 43.478 0.00 0.00 0.00 2.29
315 316 4.747108 GTGCTAAGTAGATGTGCCATGTAG 59.253 45.833 0.00 0.00 0.00 2.74
316 317 4.202253 TGCTAAGTAGATGTGCCATGTAGG 60.202 45.833 0.00 0.00 41.84 3.18
327 328 1.834188 CCATGTAGGCGGGTTTTTCT 58.166 50.000 0.00 0.00 0.00 2.52
328 329 2.167662 CCATGTAGGCGGGTTTTTCTT 58.832 47.619 0.00 0.00 0.00 2.52
329 330 2.560981 CCATGTAGGCGGGTTTTTCTTT 59.439 45.455 0.00 0.00 0.00 2.52
330 331 3.006430 CCATGTAGGCGGGTTTTTCTTTT 59.994 43.478 0.00 0.00 0.00 2.27
331 332 4.502431 CCATGTAGGCGGGTTTTTCTTTTT 60.502 41.667 0.00 0.00 0.00 1.94
379 380 3.308008 CGATGAGTCGCACGCTCG 61.308 66.667 8.98 0.00 41.49 5.03
426 427 5.882000 TCTTGATCACCATCAATCATTTCGT 59.118 36.000 0.00 0.00 46.01 3.85
430 431 7.028962 TGATCACCATCAATCATTTCGTTTTC 58.971 34.615 0.00 0.00 35.99 2.29
433 434 5.059587 CACCATCAATCATTTCGTTTTCGTG 59.940 40.000 0.00 0.00 44.46 4.35
439 440 5.881637 ATCATTTCGTTTTCGTGGTTTTG 57.118 34.783 0.00 0.00 44.46 2.44
440 441 4.734917 TCATTTCGTTTTCGTGGTTTTGT 58.265 34.783 0.00 0.00 44.46 2.83
469 470 8.410673 TTTGCTTTATGTGGGAATACTACAAA 57.589 30.769 0.00 0.00 0.00 2.83
491 492 7.492669 ACAAAACAGACACTATGGATTCTATCG 59.507 37.037 0.00 0.00 0.00 2.92
497 498 8.233868 CAGACACTATGGATTCTATCGTTCTAG 58.766 40.741 0.00 0.00 0.00 2.43
498 499 6.915349 ACACTATGGATTCTATCGTTCTAGC 58.085 40.000 0.00 0.00 0.00 3.42
515 581 9.692749 TCGTTCTAGCAGATATTAATAAACTGG 57.307 33.333 22.64 11.66 0.00 4.00
595 661 7.827236 TCCTTCAAAAAGTAACATCGACCATAT 59.173 33.333 0.00 0.00 0.00 1.78
598 664 9.878667 TTCAAAAAGTAACATCGACCATATAGA 57.121 29.630 0.00 0.00 0.00 1.98
599 665 9.529325 TCAAAAAGTAACATCGACCATATAGAG 57.471 33.333 0.00 0.00 0.00 2.43
605 671 4.738124 ACATCGACCATATAGAGCAATCG 58.262 43.478 0.00 0.00 0.00 3.34
664 738 6.560253 ACGTACTTTTCAGCTGAATGAATT 57.440 33.333 28.89 17.20 38.90 2.17
665 739 6.373779 ACGTACTTTTCAGCTGAATGAATTG 58.626 36.000 28.89 19.05 38.90 2.32
677 751 3.005684 TGAATGAATTGGTGCCACTTGAC 59.994 43.478 0.00 0.00 0.00 3.18
683 757 0.602638 TGGTGCCACTTGACGATGAC 60.603 55.000 0.00 0.00 0.00 3.06
707 781 4.930696 AGTGGAGGAATTAACCGGAATTT 58.069 39.130 9.46 0.00 34.73 1.82
708 782 4.948004 AGTGGAGGAATTAACCGGAATTTC 59.052 41.667 9.46 3.21 34.73 2.17
709 783 4.097437 GTGGAGGAATTAACCGGAATTTCC 59.903 45.833 9.46 16.34 30.86 3.13
713 787 6.220726 AGGAATTAACCGGAATTTCCAATG 57.779 37.500 24.15 5.78 35.91 2.82
714 788 5.128663 AGGAATTAACCGGAATTTCCAATGG 59.871 40.000 24.15 10.64 35.91 3.16
715 789 3.878160 TTAACCGGAATTTCCAATGGC 57.122 42.857 9.46 0.00 35.91 4.40
716 790 0.901827 AACCGGAATTTCCAATGGCC 59.098 50.000 9.46 0.00 35.91 5.36
717 791 0.975556 ACCGGAATTTCCAATGGCCC 60.976 55.000 9.46 0.00 35.91 5.80
718 792 1.437160 CGGAATTTCCAATGGCCCG 59.563 57.895 15.58 0.00 35.91 6.13
746 852 0.900182 ATCACTCCAGTCCAGCACGA 60.900 55.000 0.00 0.00 0.00 4.35
799 905 0.546122 TCCCAATCCCATCCTTGTCG 59.454 55.000 0.00 0.00 0.00 4.35
800 906 1.103398 CCCAATCCCATCCTTGTCGC 61.103 60.000 0.00 0.00 0.00 5.19
801 907 0.107017 CCAATCCCATCCTTGTCGCT 60.107 55.000 0.00 0.00 0.00 4.93
802 908 1.019673 CAATCCCATCCTTGTCGCTG 58.980 55.000 0.00 0.00 0.00 5.18
803 909 0.749454 AATCCCATCCTTGTCGCTGC 60.749 55.000 0.00 0.00 0.00 5.25
804 910 2.615227 ATCCCATCCTTGTCGCTGCC 62.615 60.000 0.00 0.00 0.00 4.85
805 911 2.825836 CCATCCTTGTCGCTGCCC 60.826 66.667 0.00 0.00 0.00 5.36
810 916 4.335647 CTTGTCGCTGCCCCCACT 62.336 66.667 0.00 0.00 0.00 4.00
874 980 0.541392 TCAACACACCACTCTGCACT 59.459 50.000 0.00 0.00 0.00 4.40
903 1012 3.246112 TTCCCTCCACCACCACCG 61.246 66.667 0.00 0.00 0.00 4.94
1017 1127 4.735132 ATGGCCGTCCACGTCGTG 62.735 66.667 18.54 18.54 46.92 4.35
1038 1148 2.652113 CCCCCTCCTCCTCCTCCTT 61.652 68.421 0.00 0.00 0.00 3.36
1042 1152 0.467290 CCTCCTCCTCCTCCTTCTCG 60.467 65.000 0.00 0.00 0.00 4.04
1093 1203 2.291043 GCCTTCTCCCCGGACTTCA 61.291 63.158 0.73 0.00 0.00 3.02
1095 1205 0.250513 CCTTCTCCCCGGACTTCAAG 59.749 60.000 0.73 0.00 0.00 3.02
1096 1206 1.267121 CTTCTCCCCGGACTTCAAGA 58.733 55.000 0.73 0.00 0.00 3.02
1188 1320 2.409651 GACGGCTACCTCTCGCAG 59.590 66.667 0.00 0.00 0.00 5.18
1226 1358 3.855503 CTGCCAGTGCCAGCTCCAA 62.856 63.158 0.00 0.00 36.33 3.53
1288 1429 2.058595 GCCTTCTCCTACCGCCTCA 61.059 63.158 0.00 0.00 0.00 3.86
1300 1441 4.162690 GCCTCACCTACCCTGCCG 62.163 72.222 0.00 0.00 0.00 5.69
1377 1533 1.390125 CTCCTCCTCCTCCACCAGT 59.610 63.158 0.00 0.00 0.00 4.00
1392 1548 4.436998 AGTCTTTCCTCCGCGCGG 62.437 66.667 42.13 42.13 0.00 6.46
1524 1683 4.011517 GTCAGGTTCGCCCCGGAA 62.012 66.667 0.73 0.00 38.27 4.30
1758 1929 4.570663 CCCTACCTCTTCGGCGCG 62.571 72.222 0.00 0.00 35.61 6.86
2069 2240 3.057547 CTCCAGACCTCACGCCGAG 62.058 68.421 0.00 0.00 41.89 4.63
2100 2277 2.095252 GCAGTCGAACGAGGCCTTC 61.095 63.158 6.77 0.00 0.00 3.46
2106 2283 1.404391 TCGAACGAGGCCTTCTACATC 59.596 52.381 6.77 0.00 0.00 3.06
2120 2297 1.449726 TACATCGACTACGCGGCCAT 61.450 55.000 12.47 0.00 39.58 4.40
2164 2341 3.068064 TCAGCATCGGCAGGTCGA 61.068 61.111 0.00 0.00 44.61 4.20
2165 2342 2.125552 CAGCATCGGCAGGTCGAA 60.126 61.111 0.00 0.00 44.61 3.71
2176 2353 1.229428 CAGGTCGAAGAAAAGCAGCA 58.771 50.000 0.00 0.00 39.69 4.41
2177 2354 1.603802 CAGGTCGAAGAAAAGCAGCAA 59.396 47.619 0.00 0.00 39.69 3.91
2196 2373 3.573491 GGCGGCATACTGAACGGC 61.573 66.667 3.07 0.00 44.25 5.68
2218 2395 3.014623 CTGGAGATCATGAAGCTGCAAA 58.985 45.455 18.84 0.00 29.59 3.68
2224 2401 2.499197 TCATGAAGCTGCAAACCGTTA 58.501 42.857 0.00 0.00 0.00 3.18
2763 8181 1.068753 CGAGCAGGCGGAGATGATT 59.931 57.895 0.00 0.00 0.00 2.57
2910 8328 2.510238 CTGCACAGCGGCTACTCC 60.510 66.667 0.26 0.00 34.04 3.85
3567 8992 2.512515 GGCCTGAGCATGACCGAC 60.513 66.667 0.00 0.00 42.56 4.79
3576 9001 2.833582 ATGACCGACCTCGCCGAT 60.834 61.111 0.00 0.00 38.18 4.18
3634 9059 1.064906 GGCGATGATCCATCCATCCAT 60.065 52.381 0.00 0.00 37.57 3.41
3635 9060 2.286872 GCGATGATCCATCCATCCATC 58.713 52.381 0.00 0.00 37.57 3.51
3636 9061 2.915349 CGATGATCCATCCATCCATCC 58.085 52.381 0.00 0.00 37.57 3.51
3637 9062 2.237893 CGATGATCCATCCATCCATCCA 59.762 50.000 0.00 0.00 37.57 3.41
3699 9128 5.587043 ACCACTAGAGTAGAAGATGTTCTCG 59.413 44.000 8.63 0.00 42.40 4.04
3714 9143 6.656693 AGATGTTCTCGGAATCAAACAGATTT 59.343 34.615 0.00 0.00 46.76 2.17
3733 9164 6.968335 CAGATTTCAACACGATTGCATTGATA 59.032 34.615 0.00 0.00 31.45 2.15
3746 9177 2.932622 GCATTGATATGGAGGCGACGAT 60.933 50.000 0.00 0.00 32.15 3.73
3752 9183 4.219725 TGATATGGAGGCGACGATTGATAA 59.780 41.667 0.00 0.00 0.00 1.75
3753 9184 2.971660 TGGAGGCGACGATTGATAAA 57.028 45.000 0.00 0.00 0.00 1.40
3755 9186 3.804036 TGGAGGCGACGATTGATAAAAT 58.196 40.909 0.00 0.00 0.00 1.82
3756 9187 3.559655 TGGAGGCGACGATTGATAAAATG 59.440 43.478 0.00 0.00 0.00 2.32
3757 9188 3.807622 GGAGGCGACGATTGATAAAATGA 59.192 43.478 0.00 0.00 0.00 2.57
3758 9189 4.272504 GGAGGCGACGATTGATAAAATGAA 59.727 41.667 0.00 0.00 0.00 2.57
3759 9190 5.156804 AGGCGACGATTGATAAAATGAAC 57.843 39.130 0.00 0.00 0.00 3.18
3760 9191 4.035208 AGGCGACGATTGATAAAATGAACC 59.965 41.667 0.00 0.00 0.00 3.62
3763 9194 5.738370 CGACGATTGATAAAATGAACCCTC 58.262 41.667 0.00 0.00 0.00 4.30
3818 9256 5.182001 AGCTCTCAAACATGTGTAATTGTCC 59.818 40.000 0.00 0.00 0.00 4.02
3849 9287 4.041740 TGCAGTTCCATGTACTATCGTC 57.958 45.455 0.00 0.00 0.00 4.20
3863 9301 7.324935 TGTACTATCGTCATTTTTAGGCTTCA 58.675 34.615 0.00 0.00 0.00 3.02
4047 9485 6.573664 TTGCAGCCATGTATGATAAATACC 57.426 37.500 0.00 0.00 0.00 2.73
4254 9695 4.270008 GCTTTTGCAAATCCCTCTACCTA 58.730 43.478 13.65 0.00 46.58 3.08
4317 9758 0.404426 TCTCTCTGAGGACGTTGGGA 59.596 55.000 4.59 0.00 0.00 4.37
4369 9811 5.571784 ATCATTGCATATTATCGCCAAGG 57.428 39.130 0.00 0.00 0.00 3.61
4447 9889 1.413008 GAATTTTCATGCCCGTGCGC 61.413 55.000 0.00 0.00 41.78 6.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.643379 TCTTAATTGCATGGTTCCTTGTC 57.357 39.130 0.00 1.26 0.00 3.18
1 2 7.902920 ATATCTTAATTGCATGGTTCCTTGT 57.097 32.000 0.00 0.00 0.00 3.16
15 16 9.884465 GCGCATGAGACTTTTTATATCTTAATT 57.116 29.630 0.30 0.00 0.00 1.40
16 17 8.507249 GGCGCATGAGACTTTTTATATCTTAAT 58.493 33.333 10.83 0.00 0.00 1.40
17 18 7.497579 TGGCGCATGAGACTTTTTATATCTTAA 59.502 33.333 10.83 0.00 0.00 1.85
18 19 6.989759 TGGCGCATGAGACTTTTTATATCTTA 59.010 34.615 10.83 0.00 0.00 2.10
19 20 5.822519 TGGCGCATGAGACTTTTTATATCTT 59.177 36.000 10.83 0.00 0.00 2.40
20 21 5.368145 TGGCGCATGAGACTTTTTATATCT 58.632 37.500 10.83 0.00 0.00 1.98
21 22 5.673337 TGGCGCATGAGACTTTTTATATC 57.327 39.130 10.83 0.00 0.00 1.63
22 23 6.639632 AATGGCGCATGAGACTTTTTATAT 57.360 33.333 10.83 0.00 0.00 0.86
23 24 7.561021 TTAATGGCGCATGAGACTTTTTATA 57.439 32.000 10.83 0.00 0.00 0.98
24 25 4.989279 AATGGCGCATGAGACTTTTTAT 57.011 36.364 10.83 0.00 0.00 1.40
25 26 5.888691 TTAATGGCGCATGAGACTTTTTA 57.111 34.783 10.83 0.00 0.00 1.52
26 27 4.782019 TTAATGGCGCATGAGACTTTTT 57.218 36.364 10.83 0.53 0.00 1.94
27 28 4.440525 CCATTAATGGCGCATGAGACTTTT 60.441 41.667 21.32 2.90 41.75 2.27
28 29 3.067180 CCATTAATGGCGCATGAGACTTT 59.933 43.478 21.32 6.24 41.75 2.66
29 30 2.620115 CCATTAATGGCGCATGAGACTT 59.380 45.455 21.32 0.00 41.75 3.01
30 31 2.224606 CCATTAATGGCGCATGAGACT 58.775 47.619 21.32 0.00 41.75 3.24
31 32 2.693797 CCATTAATGGCGCATGAGAC 57.306 50.000 21.32 0.00 41.75 3.36
49 50 5.997746 ACATGTGCATATGGTCTTATACACC 59.002 40.000 24.94 0.00 28.65 4.16
50 51 7.496529 AACATGTGCATATGGTCTTATACAC 57.503 36.000 24.94 2.16 32.32 2.90
51 52 9.791801 ATTAACATGTGCATATGGTCTTATACA 57.208 29.630 24.94 1.25 32.32 2.29
55 56 9.407380 AGAAATTAACATGTGCATATGGTCTTA 57.593 29.630 24.94 13.06 32.32 2.10
56 57 8.297470 AGAAATTAACATGTGCATATGGTCTT 57.703 30.769 24.94 14.10 32.32 3.01
57 58 7.886629 AGAAATTAACATGTGCATATGGTCT 57.113 32.000 24.94 10.52 32.32 3.85
89 90 5.948162 ACTAGTGAGACCATGCATCATTTTT 59.052 36.000 0.00 0.00 0.00 1.94
90 91 5.356190 CACTAGTGAGACCATGCATCATTTT 59.644 40.000 18.45 0.00 0.00 1.82
91 92 4.880120 CACTAGTGAGACCATGCATCATTT 59.120 41.667 18.45 0.00 0.00 2.32
92 93 4.449131 CACTAGTGAGACCATGCATCATT 58.551 43.478 18.45 0.00 0.00 2.57
93 94 3.181457 CCACTAGTGAGACCATGCATCAT 60.181 47.826 24.68 0.00 0.00 2.45
94 95 2.169144 CCACTAGTGAGACCATGCATCA 59.831 50.000 24.68 0.00 0.00 3.07
95 96 2.831333 CCACTAGTGAGACCATGCATC 58.169 52.381 24.68 0.00 0.00 3.91
96 97 1.134280 GCCACTAGTGAGACCATGCAT 60.134 52.381 24.68 0.00 0.00 3.96
97 98 0.250234 GCCACTAGTGAGACCATGCA 59.750 55.000 24.68 0.00 0.00 3.96
98 99 0.250234 TGCCACTAGTGAGACCATGC 59.750 55.000 24.68 16.43 0.00 4.06
99 100 1.741732 GCTGCCACTAGTGAGACCATG 60.742 57.143 24.68 6.56 0.00 3.66
100 101 0.539051 GCTGCCACTAGTGAGACCAT 59.461 55.000 24.68 0.00 0.00 3.55
101 102 0.542938 AGCTGCCACTAGTGAGACCA 60.543 55.000 24.68 13.42 0.00 4.02
102 103 0.610687 AAGCTGCCACTAGTGAGACC 59.389 55.000 24.68 9.56 0.00 3.85
103 104 2.072298 CAAAGCTGCCACTAGTGAGAC 58.928 52.381 24.68 13.19 0.00 3.36
104 105 1.970640 TCAAAGCTGCCACTAGTGAGA 59.029 47.619 24.68 8.88 0.00 3.27
105 106 2.462456 TCAAAGCTGCCACTAGTGAG 57.538 50.000 24.68 15.13 0.00 3.51
106 107 2.928801 TTCAAAGCTGCCACTAGTGA 57.071 45.000 24.68 4.16 0.00 3.41
107 108 3.988379 TTTTCAAAGCTGCCACTAGTG 57.012 42.857 16.34 16.34 0.00 2.74
108 109 4.144297 TGATTTTCAAAGCTGCCACTAGT 58.856 39.130 0.00 0.00 0.00 2.57
109 110 4.771590 TGATTTTCAAAGCTGCCACTAG 57.228 40.909 0.00 0.00 0.00 2.57
110 111 5.726980 ATTGATTTTCAAAGCTGCCACTA 57.273 34.783 0.00 0.00 40.12 2.74
111 112 4.612264 ATTGATTTTCAAAGCTGCCACT 57.388 36.364 0.00 0.00 40.12 4.00
112 113 4.083696 CCAATTGATTTTCAAAGCTGCCAC 60.084 41.667 7.12 0.00 40.12 5.01
113 114 4.066490 CCAATTGATTTTCAAAGCTGCCA 58.934 39.130 7.12 0.00 40.12 4.92
114 115 4.317488 TCCAATTGATTTTCAAAGCTGCC 58.683 39.130 7.12 0.00 40.12 4.85
115 116 7.599630 TTATCCAATTGATTTTCAAAGCTGC 57.400 32.000 7.12 0.00 40.12 5.25
151 152 9.127277 GGGGTAAAATATGTCACAAAGCTAATA 57.873 33.333 0.00 0.00 0.00 0.98
152 153 7.617723 TGGGGTAAAATATGTCACAAAGCTAAT 59.382 33.333 0.00 0.00 0.00 1.73
153 154 6.948886 TGGGGTAAAATATGTCACAAAGCTAA 59.051 34.615 0.00 0.00 0.00 3.09
154 155 6.486056 TGGGGTAAAATATGTCACAAAGCTA 58.514 36.000 0.00 0.00 0.00 3.32
155 156 5.329399 TGGGGTAAAATATGTCACAAAGCT 58.671 37.500 0.00 0.00 0.00 3.74
156 157 5.652994 TGGGGTAAAATATGTCACAAAGC 57.347 39.130 0.00 0.00 0.00 3.51
157 158 8.934825 CAAAATGGGGTAAAATATGTCACAAAG 58.065 33.333 0.00 0.00 0.00 2.77
158 159 8.651389 TCAAAATGGGGTAAAATATGTCACAAA 58.349 29.630 0.00 0.00 0.00 2.83
159 160 8.195165 TCAAAATGGGGTAAAATATGTCACAA 57.805 30.769 0.00 0.00 0.00 3.33
160 161 7.671819 TCTCAAAATGGGGTAAAATATGTCACA 59.328 33.333 0.00 0.00 0.00 3.58
161 162 8.062065 TCTCAAAATGGGGTAAAATATGTCAC 57.938 34.615 0.00 0.00 0.00 3.67
162 163 8.657387 TTCTCAAAATGGGGTAAAATATGTCA 57.343 30.769 0.00 0.00 0.00 3.58
163 164 9.936759 TTTTCTCAAAATGGGGTAAAATATGTC 57.063 29.630 0.00 0.00 0.00 3.06
168 169 8.575589 GCAAATTTTCTCAAAATGGGGTAAAAT 58.424 29.630 0.00 0.00 40.05 1.82
169 170 7.557719 TGCAAATTTTCTCAAAATGGGGTAAAA 59.442 29.630 0.00 0.00 40.05 1.52
170 171 7.056635 TGCAAATTTTCTCAAAATGGGGTAAA 58.943 30.769 0.00 0.00 40.05 2.01
171 172 6.595682 TGCAAATTTTCTCAAAATGGGGTAA 58.404 32.000 0.00 0.00 40.05 2.85
172 173 6.179906 TGCAAATTTTCTCAAAATGGGGTA 57.820 33.333 0.00 0.00 40.05 3.69
173 174 5.046288 TGCAAATTTTCTCAAAATGGGGT 57.954 34.783 0.00 0.00 40.05 4.95
174 175 6.578163 ATTGCAAATTTTCTCAAAATGGGG 57.422 33.333 1.71 0.00 40.05 4.96
180 181 9.225436 GGGGTATAAATTGCAAATTTTCTCAAA 57.775 29.630 1.71 0.00 0.00 2.69
181 182 8.378565 TGGGGTATAAATTGCAAATTTTCTCAA 58.621 29.630 1.71 0.00 0.00 3.02
182 183 7.911651 TGGGGTATAAATTGCAAATTTTCTCA 58.088 30.769 1.71 0.00 0.00 3.27
183 184 8.785329 TTGGGGTATAAATTGCAAATTTTCTC 57.215 30.769 1.71 0.00 0.00 2.87
184 185 9.752228 AATTGGGGTATAAATTGCAAATTTTCT 57.248 25.926 1.71 0.00 0.00 2.52
185 186 9.786105 CAATTGGGGTATAAATTGCAAATTTTC 57.214 29.630 1.71 0.00 37.07 2.29
186 187 9.525826 TCAATTGGGGTATAAATTGCAAATTTT 57.474 25.926 1.71 2.94 41.47 1.82
187 188 9.697990 ATCAATTGGGGTATAAATTGCAAATTT 57.302 25.926 1.71 7.58 41.47 1.82
188 189 9.341078 GATCAATTGGGGTATAAATTGCAAATT 57.659 29.630 1.71 3.57 41.47 1.82
189 190 8.492782 TGATCAATTGGGGTATAAATTGCAAAT 58.507 29.630 1.71 0.00 41.47 2.32
190 191 7.855375 TGATCAATTGGGGTATAAATTGCAAA 58.145 30.769 1.71 0.00 41.47 3.68
191 192 7.429374 TGATCAATTGGGGTATAAATTGCAA 57.571 32.000 0.00 0.00 41.47 4.08
192 193 7.429374 TTGATCAATTGGGGTATAAATTGCA 57.571 32.000 3.38 0.00 41.47 4.08
193 194 7.986889 ACTTTGATCAATTGGGGTATAAATTGC 59.013 33.333 9.40 0.00 41.47 3.56
194 195 9.889128 AACTTTGATCAATTGGGGTATAAATTG 57.111 29.630 9.40 2.46 42.53 2.32
195 196 9.889128 CAACTTTGATCAATTGGGGTATAAATT 57.111 29.630 9.40 0.00 0.00 1.82
196 197 9.045745 ACAACTTTGATCAATTGGGGTATAAAT 57.954 29.630 20.47 0.39 0.00 1.40
197 198 8.310382 CACAACTTTGATCAATTGGGGTATAAA 58.690 33.333 20.47 0.00 0.00 1.40
198 199 7.578571 GCACAACTTTGATCAATTGGGGTATAA 60.579 37.037 20.35 0.00 0.00 0.98
199 200 6.127479 GCACAACTTTGATCAATTGGGGTATA 60.127 38.462 20.35 0.00 0.00 1.47
200 201 5.337491 GCACAACTTTGATCAATTGGGGTAT 60.337 40.000 20.35 2.39 0.00 2.73
201 202 4.021544 GCACAACTTTGATCAATTGGGGTA 60.022 41.667 20.35 0.79 0.00 3.69
202 203 3.244181 GCACAACTTTGATCAATTGGGGT 60.244 43.478 20.35 11.59 0.00 4.95
203 204 3.328505 GCACAACTTTGATCAATTGGGG 58.671 45.455 20.35 14.62 0.00 4.96
204 205 3.244146 TGGCACAACTTTGATCAATTGGG 60.244 43.478 20.47 18.55 31.92 4.12
205 206 3.742369 GTGGCACAACTTTGATCAATTGG 59.258 43.478 20.47 12.94 44.16 3.16
206 207 4.370049 TGTGGCACAACTTTGATCAATTG 58.630 39.130 19.74 16.65 44.16 2.32
207 208 4.669206 TGTGGCACAACTTTGATCAATT 57.331 36.364 19.74 0.00 44.16 2.32
208 209 4.877378 ATGTGGCACAACTTTGATCAAT 57.123 36.364 25.95 0.00 44.16 2.57
209 210 4.669206 AATGTGGCACAACTTTGATCAA 57.331 36.364 25.95 3.38 44.16 2.57
210 211 4.669206 AAATGTGGCACAACTTTGATCA 57.331 36.364 25.95 0.00 44.16 2.92
211 212 5.116983 CGTAAAATGTGGCACAACTTTGATC 59.883 40.000 27.83 19.94 44.16 2.92
212 213 4.981674 CGTAAAATGTGGCACAACTTTGAT 59.018 37.500 27.83 14.75 44.16 2.57
213 214 4.355437 CGTAAAATGTGGCACAACTTTGA 58.645 39.130 27.83 16.61 44.16 2.69
214 215 3.060607 GCGTAAAATGTGGCACAACTTTG 60.061 43.478 27.83 18.71 44.16 2.77
215 216 3.120041 GCGTAAAATGTGGCACAACTTT 58.880 40.909 25.95 25.41 44.16 2.66
216 217 2.099921 TGCGTAAAATGTGGCACAACTT 59.900 40.909 25.95 21.17 44.16 2.66
217 218 1.678627 TGCGTAAAATGTGGCACAACT 59.321 42.857 25.95 12.18 44.16 3.16
218 219 2.126914 TGCGTAAAATGTGGCACAAC 57.873 45.000 25.95 16.76 44.16 3.32
219 220 2.871182 TTGCGTAAAATGTGGCACAA 57.129 40.000 25.95 4.79 44.16 3.33
220 221 3.055591 CAATTGCGTAAAATGTGGCACA 58.944 40.909 24.36 24.36 34.72 4.57
221 222 2.159854 GCAATTGCGTAAAATGTGGCAC 60.160 45.455 15.87 11.55 34.72 5.01
222 223 2.064762 GCAATTGCGTAAAATGTGGCA 58.935 42.857 15.87 0.00 0.00 4.92
223 224 2.064762 TGCAATTGCGTAAAATGTGGC 58.935 42.857 24.58 0.00 45.83 5.01
224 225 4.925061 AATGCAATTGCGTAAAATGTGG 57.075 36.364 24.83 0.00 45.83 4.17
225 226 7.070798 AGAAAAATGCAATTGCGTAAAATGTG 58.929 30.769 24.83 0.00 45.83 3.21
226 227 7.188468 AGAAAAATGCAATTGCGTAAAATGT 57.812 28.000 24.83 6.01 45.83 2.71
227 228 6.737750 GGAGAAAAATGCAATTGCGTAAAATG 59.262 34.615 24.83 0.00 45.83 2.32
228 229 6.426328 TGGAGAAAAATGCAATTGCGTAAAAT 59.574 30.769 24.83 9.86 45.83 1.82
229 230 5.755375 TGGAGAAAAATGCAATTGCGTAAAA 59.245 32.000 24.83 7.74 45.83 1.52
230 231 5.292765 TGGAGAAAAATGCAATTGCGTAAA 58.707 33.333 24.83 8.15 45.83 2.01
231 232 4.876125 TGGAGAAAAATGCAATTGCGTAA 58.124 34.783 24.83 8.54 45.83 3.18
232 233 4.511617 TGGAGAAAAATGCAATTGCGTA 57.488 36.364 24.83 9.32 45.83 4.42
233 234 3.383620 TGGAGAAAAATGCAATTGCGT 57.616 38.095 24.58 22.14 45.83 5.24
234 235 4.932268 ATTGGAGAAAAATGCAATTGCG 57.068 36.364 24.58 0.00 45.83 4.85
235 236 6.905578 AGAAATTGGAGAAAAATGCAATTGC 58.094 32.000 23.69 23.69 46.51 3.56
236 237 9.738832 AAAAGAAATTGGAGAAAAATGCAATTG 57.261 25.926 0.00 0.00 46.51 2.32
263 264 3.493524 GGAGAAAAATGTCCCCGCAAAAA 60.494 43.478 0.00 0.00 0.00 1.94
264 265 2.036604 GGAGAAAAATGTCCCCGCAAAA 59.963 45.455 0.00 0.00 0.00 2.44
265 266 1.616374 GGAGAAAAATGTCCCCGCAAA 59.384 47.619 0.00 0.00 0.00 3.68
266 267 1.253100 GGAGAAAAATGTCCCCGCAA 58.747 50.000 0.00 0.00 0.00 4.85
267 268 0.111446 TGGAGAAAAATGTCCCCGCA 59.889 50.000 0.00 0.00 31.04 5.69
268 269 1.253100 TTGGAGAAAAATGTCCCCGC 58.747 50.000 0.00 0.00 31.04 6.13
269 270 4.494484 GAAATTGGAGAAAAATGTCCCCG 58.506 43.478 0.00 0.00 31.04 5.73
270 271 4.021456 ACGAAATTGGAGAAAAATGTCCCC 60.021 41.667 0.00 0.00 31.04 4.81
271 272 4.923281 CACGAAATTGGAGAAAAATGTCCC 59.077 41.667 0.00 0.00 31.04 4.46
272 273 4.385748 GCACGAAATTGGAGAAAAATGTCC 59.614 41.667 0.00 0.00 0.00 4.02
273 274 5.222631 AGCACGAAATTGGAGAAAAATGTC 58.777 37.500 0.00 0.00 0.00 3.06
274 275 5.200368 AGCACGAAATTGGAGAAAAATGT 57.800 34.783 0.00 0.00 0.00 2.71
275 276 6.863126 ACTTAGCACGAAATTGGAGAAAAATG 59.137 34.615 0.00 0.00 0.00 2.32
276 277 6.981722 ACTTAGCACGAAATTGGAGAAAAAT 58.018 32.000 0.00 0.00 0.00 1.82
277 278 6.385649 ACTTAGCACGAAATTGGAGAAAAA 57.614 33.333 0.00 0.00 0.00 1.94
278 279 6.932400 TCTACTTAGCACGAAATTGGAGAAAA 59.068 34.615 0.00 0.00 0.00 2.29
279 280 6.460781 TCTACTTAGCACGAAATTGGAGAAA 58.539 36.000 0.00 0.00 0.00 2.52
280 281 6.032956 TCTACTTAGCACGAAATTGGAGAA 57.967 37.500 0.00 0.00 0.00 2.87
281 282 5.654603 TCTACTTAGCACGAAATTGGAGA 57.345 39.130 0.00 0.00 0.00 3.71
282 283 5.812642 ACATCTACTTAGCACGAAATTGGAG 59.187 40.000 0.00 0.00 0.00 3.86
283 284 5.580691 CACATCTACTTAGCACGAAATTGGA 59.419 40.000 0.00 0.00 0.00 3.53
284 285 5.727791 GCACATCTACTTAGCACGAAATTGG 60.728 44.000 0.00 0.00 0.00 3.16
285 286 5.258622 GCACATCTACTTAGCACGAAATTG 58.741 41.667 0.00 0.00 0.00 2.32
286 287 4.332819 GGCACATCTACTTAGCACGAAATT 59.667 41.667 0.00 0.00 0.00 1.82
287 288 3.871594 GGCACATCTACTTAGCACGAAAT 59.128 43.478 0.00 0.00 0.00 2.17
288 289 3.259064 GGCACATCTACTTAGCACGAAA 58.741 45.455 0.00 0.00 0.00 3.46
289 290 2.232696 TGGCACATCTACTTAGCACGAA 59.767 45.455 0.00 0.00 0.00 3.85
290 291 1.822371 TGGCACATCTACTTAGCACGA 59.178 47.619 0.00 0.00 0.00 4.35
291 292 2.293677 TGGCACATCTACTTAGCACG 57.706 50.000 0.00 0.00 0.00 5.34
308 309 1.834188 AGAAAAACCCGCCTACATGG 58.166 50.000 0.00 0.00 39.35 3.66
309 310 3.934457 AAAGAAAAACCCGCCTACATG 57.066 42.857 0.00 0.00 0.00 3.21
310 311 4.948341 AAAAAGAAAAACCCGCCTACAT 57.052 36.364 0.00 0.00 0.00 2.29
328 329 0.467290 ACGCCAAGCCAGAGGAAAAA 60.467 50.000 0.00 0.00 0.00 1.94
329 330 0.467290 AACGCCAAGCCAGAGGAAAA 60.467 50.000 0.00 0.00 0.00 2.29
330 331 1.150536 AACGCCAAGCCAGAGGAAA 59.849 52.632 0.00 0.00 0.00 3.13
331 332 1.600636 CAACGCCAAGCCAGAGGAA 60.601 57.895 0.00 0.00 0.00 3.36
332 333 2.032528 CAACGCCAAGCCAGAGGA 59.967 61.111 0.00 0.00 0.00 3.71
333 334 3.741476 GCAACGCCAAGCCAGAGG 61.741 66.667 0.00 0.00 0.00 3.69
334 335 2.974489 CTGCAACGCCAAGCCAGAG 61.974 63.158 0.00 0.00 0.00 3.35
335 336 2.979676 CTGCAACGCCAAGCCAGA 60.980 61.111 0.00 0.00 0.00 3.86
336 337 4.047059 CCTGCAACGCCAAGCCAG 62.047 66.667 0.00 0.00 0.00 4.85
337 338 4.577677 TCCTGCAACGCCAAGCCA 62.578 61.111 0.00 0.00 0.00 4.75
338 339 3.741476 CTCCTGCAACGCCAAGCC 61.741 66.667 0.00 0.00 0.00 4.35
339 340 3.741476 CCTCCTGCAACGCCAAGC 61.741 66.667 0.00 0.00 0.00 4.01
340 341 3.741476 GCCTCCTGCAACGCCAAG 61.741 66.667 0.00 0.00 40.77 3.61
452 453 6.430000 GTGTCTGTTTTGTAGTATTCCCACAT 59.570 38.462 0.00 0.00 0.00 3.21
453 454 5.761234 GTGTCTGTTTTGTAGTATTCCCACA 59.239 40.000 0.00 0.00 0.00 4.17
454 455 5.995897 AGTGTCTGTTTTGTAGTATTCCCAC 59.004 40.000 0.00 0.00 0.00 4.61
455 456 6.182507 AGTGTCTGTTTTGTAGTATTCCCA 57.817 37.500 0.00 0.00 0.00 4.37
464 465 9.817809 GATAGAATCCATAGTGTCTGTTTTGTA 57.182 33.333 0.00 0.00 0.00 2.41
465 466 7.492669 CGATAGAATCCATAGTGTCTGTTTTGT 59.507 37.037 0.00 0.00 39.76 2.83
466 467 7.492669 ACGATAGAATCCATAGTGTCTGTTTTG 59.507 37.037 0.00 0.00 41.38 2.44
469 470 6.716934 ACGATAGAATCCATAGTGTCTGTT 57.283 37.500 0.00 0.00 41.38 3.16
558 624 8.490355 GTTACTTTTTGAAGGAAATGCTTCATG 58.510 33.333 16.51 10.47 39.04 3.07
560 626 7.551585 TGTTACTTTTTGAAGGAAATGCTTCA 58.448 30.769 12.58 12.58 37.75 3.02
575 641 7.985184 TGCTCTATATGGTCGATGTTACTTTTT 59.015 33.333 0.00 0.00 0.00 1.94
576 642 7.497595 TGCTCTATATGGTCGATGTTACTTTT 58.502 34.615 0.00 0.00 0.00 2.27
577 643 7.050970 TGCTCTATATGGTCGATGTTACTTT 57.949 36.000 0.00 0.00 0.00 2.66
595 661 3.500343 TCCTGGATGATCGATTGCTCTA 58.500 45.455 0.00 0.00 0.00 2.43
598 664 1.347050 CCTCCTGGATGATCGATTGCT 59.653 52.381 0.00 0.00 34.57 3.91
599 665 1.610102 CCCTCCTGGATGATCGATTGC 60.610 57.143 0.00 0.00 35.39 3.56
605 671 4.510167 TTTTTCTCCCTCCTGGATGATC 57.490 45.455 0.00 0.00 44.07 2.92
664 738 0.602638 GTCATCGTCAAGTGGCACCA 60.603 55.000 15.27 0.00 0.00 4.17
665 739 1.626654 CGTCATCGTCAAGTGGCACC 61.627 60.000 15.27 0.00 0.00 5.01
677 751 2.586258 AATTCCTCCACTCGTCATCG 57.414 50.000 0.00 0.00 38.55 3.84
683 757 1.479323 TCCGGTTAATTCCTCCACTCG 59.521 52.381 0.00 0.00 0.00 4.18
714 788 3.219198 GTGATTGGGGCATCGGGC 61.219 66.667 0.00 0.00 43.74 6.13
715 789 1.526917 GAGTGATTGGGGCATCGGG 60.527 63.158 0.00 0.00 0.00 5.14
716 790 1.526917 GGAGTGATTGGGGCATCGG 60.527 63.158 0.00 0.00 0.00 4.18
717 791 0.816825 CTGGAGTGATTGGGGCATCG 60.817 60.000 0.00 0.00 0.00 3.84
718 792 0.257039 ACTGGAGTGATTGGGGCATC 59.743 55.000 0.00 0.00 0.00 3.91
746 852 2.480610 CCGTGTGTGTTTGGCAGCT 61.481 57.895 0.00 0.00 0.00 4.24
800 906 1.891722 GAATTGGCAAGTGGGGGCAG 61.892 60.000 4.31 0.00 42.10 4.85
801 907 1.912763 GAATTGGCAAGTGGGGGCA 60.913 57.895 4.31 0.00 39.24 5.36
802 908 1.266867 ATGAATTGGCAAGTGGGGGC 61.267 55.000 4.31 0.00 0.00 5.80
803 909 1.207811 GAATGAATTGGCAAGTGGGGG 59.792 52.381 4.31 0.00 0.00 5.40
804 910 1.207811 GGAATGAATTGGCAAGTGGGG 59.792 52.381 4.31 0.00 0.00 4.96
805 911 1.901159 TGGAATGAATTGGCAAGTGGG 59.099 47.619 4.31 0.00 0.00 4.61
810 916 3.237746 TGGACTTGGAATGAATTGGCAA 58.762 40.909 0.68 0.68 0.00 4.52
874 980 3.540367 GAGGGAACACGGCGGGAAA 62.540 63.158 19.75 0.00 0.00 3.13
985 1095 1.783031 GCCATTCAGCTCAGGCGATG 61.783 60.000 0.12 0.00 44.37 3.84
987 1097 2.124983 GCCATTCAGCTCAGGCGA 60.125 61.111 0.12 0.00 44.37 5.54
989 1099 3.207669 CGGCCATTCAGCTCAGGC 61.208 66.667 2.24 6.68 46.28 4.85
1017 1127 3.767044 GAGGAGGAGGAGGGGGAGC 62.767 73.684 0.00 0.00 0.00 4.70
1093 1203 1.517257 CGCACGCGAGGAAGATCTT 60.517 57.895 15.93 7.95 42.83 2.40
1095 1205 2.956964 CCGCACGCGAGGAAGATC 60.957 66.667 15.93 0.00 42.83 2.75
1128 1238 4.011517 TTGTCGGACGGGAAGGGC 62.012 66.667 3.34 0.00 0.00 5.19
1265 1406 2.491022 CGGTAGGAGAAGGCCGAGG 61.491 68.421 0.00 0.00 46.33 4.63
1368 1518 0.247736 CGGAGGAAAGACTGGTGGAG 59.752 60.000 0.00 0.00 0.00 3.86
1369 1519 1.827399 GCGGAGGAAAGACTGGTGGA 61.827 60.000 0.00 0.00 0.00 4.02
1370 1520 1.376037 GCGGAGGAAAGACTGGTGG 60.376 63.158 0.00 0.00 0.00 4.61
1614 1782 1.379916 CAGGTCATTGCTCCCCACA 59.620 57.895 0.00 0.00 0.00 4.17
1690 1858 2.317609 CGTTCCCGTTGGTCAGCAG 61.318 63.158 0.00 0.00 0.00 4.24
1693 1861 1.068417 TGTCGTTCCCGTTGGTCAG 59.932 57.895 0.00 0.00 35.01 3.51
1739 1907 2.758737 CGCCGAAGAGGTAGGGGT 60.759 66.667 0.00 0.00 43.70 4.95
1786 1957 1.290324 CGTAGATGATCGGGCTGGG 59.710 63.158 0.00 0.00 0.00 4.45
1941 2112 3.674050 GAGGTAGCGGGACCCCTGA 62.674 68.421 4.46 0.00 40.74 3.86
2100 2277 1.370172 GGCCGCGTAGTCGATGTAG 60.370 63.158 4.92 0.00 39.71 2.74
2164 2341 0.032540 CCGCCTTTGCTGCTTTTCTT 59.967 50.000 0.00 0.00 34.43 2.52
2165 2342 1.662044 CCGCCTTTGCTGCTTTTCT 59.338 52.632 0.00 0.00 34.43 2.52
2176 2353 1.024579 CCGTTCAGTATGCCGCCTTT 61.025 55.000 0.00 0.00 34.76 3.11
2177 2354 1.449601 CCGTTCAGTATGCCGCCTT 60.450 57.895 0.00 0.00 34.76 4.35
2196 2373 1.134189 TGCAGCTTCATGATCTCCAGG 60.134 52.381 0.00 0.00 0.00 4.45
2218 2395 1.202154 CGTCGAGCTCAGATTAACGGT 60.202 52.381 15.40 0.00 0.00 4.83
2224 2401 1.668101 GACCCCGTCGAGCTCAGATT 61.668 60.000 15.40 0.00 0.00 2.40
2266 2443 0.498927 GTCGCGAGCACGATTATGAC 59.501 55.000 10.24 2.93 45.06 3.06
2271 2448 4.415332 ACCGTCGCGAGCACGATT 62.415 61.111 18.89 4.10 45.06 3.34
2312 2492 2.786564 GAAAAAGCAGAGCACCGCGG 62.787 60.000 26.86 26.86 0.00 6.46
2372 2552 1.935327 CTCCTTGTCCTCCGTCGACC 61.935 65.000 10.58 0.00 0.00 4.79
2724 8142 1.659954 GCAGTAGCCGATGAGCGAG 60.660 63.158 0.00 0.00 44.57 5.03
2910 8328 1.482621 CGCGGTGGATGATGTTCTCG 61.483 60.000 0.00 0.00 0.00 4.04
3066 8484 3.121030 CCGAAGCTGCCCTTGACG 61.121 66.667 0.00 0.00 32.78 4.35
3069 8487 1.745489 GTACCCGAAGCTGCCCTTG 60.745 63.158 0.00 0.00 32.78 3.61
3099 8517 1.066573 AGCTGCTGCGTCTTGAAGTAT 60.067 47.619 10.14 0.00 45.42 2.12
3516 8941 1.158484 CGTCCATCATCAGCAGGCTG 61.158 60.000 14.97 14.97 44.86 4.85
3576 9001 0.978146 GCTGGGAGAAGACCTGGCTA 60.978 60.000 0.00 0.00 0.00 3.93
3606 9031 3.928779 GATCATCGCCCCTCGCCA 61.929 66.667 0.00 0.00 38.27 5.69
3615 9040 2.286872 GATGGATGGATGGATCATCGC 58.713 52.381 0.00 0.00 41.35 4.58
3634 9059 1.640593 TTGGTGCAGGAAGTGGTGGA 61.641 55.000 0.00 0.00 0.00 4.02
3635 9060 0.540365 ATTGGTGCAGGAAGTGGTGG 60.540 55.000 0.00 0.00 0.00 4.61
3636 9061 0.883833 GATTGGTGCAGGAAGTGGTG 59.116 55.000 0.00 0.00 0.00 4.17
3637 9062 0.773644 AGATTGGTGCAGGAAGTGGT 59.226 50.000 0.00 0.00 0.00 4.16
3699 9128 5.757886 TCGTGTTGAAATCTGTTTGATTCC 58.242 37.500 0.00 0.00 43.99 3.01
3714 9143 4.880696 TCCATATCAATGCAATCGTGTTGA 59.119 37.500 0.95 0.95 35.33 3.18
3733 9164 3.469008 TTTATCAATCGTCGCCTCCAT 57.531 42.857 0.00 0.00 0.00 3.41
3746 9177 5.893255 CCCAGATGAGGGTTCATTTTATCAA 59.107 40.000 0.00 0.00 44.01 2.57
3760 9191 0.033796 ACAATGGTGCCCAGATGAGG 60.034 55.000 13.26 0.00 36.75 3.86
3763 9194 0.533491 CCAACAATGGTGCCCAGATG 59.467 55.000 0.00 4.69 42.18 2.90
3782 9217 1.217779 GAGAGCTGTGGAGGAGCAC 59.782 63.158 0.00 0.00 39.05 4.40
3849 9287 6.849588 ACAAAAAGCTGAAGCCTAAAAATG 57.150 33.333 0.00 0.00 43.38 2.32
3863 9301 7.090808 GGCTATGCTAGTTAAAACAAAAAGCT 58.909 34.615 0.00 0.00 0.00 3.74
4047 9485 2.259618 CCTGTACACTTCCGTTCATCG 58.740 52.381 0.00 0.00 39.52 3.84
4123 9562 9.571816 TTTCATGGAGTTGCATCATTGTATATA 57.428 29.630 0.00 0.00 0.00 0.86
4254 9695 1.207329 GAGCTAAGACACCCGTTGGAT 59.793 52.381 0.00 0.00 34.81 3.41
4317 9758 2.009774 GTGGCACTTCTTCGCATGTAT 58.990 47.619 11.13 0.00 0.00 2.29
4395 9837 4.514401 GCTAGCAAGTAAGTACCCAACAT 58.486 43.478 10.63 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.