Multiple sequence alignment - TraesCS5A01G513800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G513800 chr5A 100.000 3158 0 0 1 3158 677675143 677671986 0.000000e+00 5832.0
1 TraesCS5A01G513800 chr5A 83.804 920 88 39 894 1798 677778554 677777681 0.000000e+00 817.0
2 TraesCS5A01G513800 chr5A 80.042 957 76 48 889 1798 677727326 677726438 1.250000e-168 603.0
3 TraesCS5A01G513800 chr4B 83.442 1528 113 50 510 1996 638423743 638422315 0.000000e+00 1291.0
4 TraesCS5A01G513800 chr4B 89.820 776 50 16 2018 2780 638422252 638421493 0.000000e+00 968.0
5 TraesCS5A01G513800 chr4B 79.362 940 80 51 905 1798 638369948 638369077 9.890000e-155 556.0
6 TraesCS5A01G513800 chr4B 85.900 461 41 11 70 515 638424229 638423778 1.330000e-128 470.0
7 TraesCS5A01G513800 chr4B 83.224 304 18 14 2864 3157 638421491 638421211 6.760000e-62 248.0
8 TraesCS5A01G513800 chr4B 93.976 83 5 0 1821 1903 638369093 638369011 3.310000e-25 126.0
9 TraesCS5A01G513800 chr4D 89.728 993 54 18 1815 2780 497514311 497513340 0.000000e+00 1225.0
10 TraesCS5A01G513800 chr4D 87.452 1044 43 26 795 1798 497496576 497495581 0.000000e+00 1122.0
11 TraesCS5A01G513800 chr4D 87.674 1006 57 23 839 1798 497467942 497466958 0.000000e+00 1109.0
12 TraesCS5A01G513800 chr4D 86.492 1029 49 25 796 1799 497562825 497561862 0.000000e+00 1048.0
13 TraesCS5A01G513800 chr4D 84.912 908 50 24 894 1750 497515231 497514360 0.000000e+00 837.0
14 TraesCS5A01G513800 chr4D 86.200 529 57 7 1 517 497603558 497603034 2.750000e-155 558.0
15 TraesCS5A01G513800 chr4D 80.296 609 78 23 2196 2780 497546491 497545901 3.770000e-114 422.0
16 TraesCS5A01G513800 chr4D 86.411 287 21 4 1458 1726 497452449 497452163 6.620000e-77 298.0
17 TraesCS5A01G513800 chr4D 85.333 225 11 6 2934 3158 497513287 497513085 2.470000e-51 213.0
18 TraesCS5A01G513800 chr4D 76.494 502 42 37 889 1355 497452952 497452492 1.480000e-48 204.0
19 TraesCS5A01G513800 chr4D 87.975 158 14 3 1821 1973 497466974 497466817 6.960000e-42 182.0
20 TraesCS5A01G513800 chr4D 88.312 154 11 3 1827 1973 497495591 497495438 9.000000e-41 178.0
21 TraesCS5A01G513800 chr4D 95.370 108 5 0 1821 1928 497561878 497561771 4.190000e-39 172.0
22 TraesCS5A01G513800 chr4D 92.982 114 8 0 1 114 293550177 293550290 1.950000e-37 167.0
23 TraesCS5A01G513800 chr4D 92.105 114 8 1 1 114 34661639 34661527 3.260000e-35 159.0
24 TraesCS5A01G513800 chr4D 95.122 82 4 0 1717 1798 497451017 497450936 2.560000e-26 130.0
25 TraesCS5A01G513800 chr4D 94.643 56 3 0 2861 2916 497513341 497513286 1.560000e-13 87.9
26 TraesCS5A01G513800 chr7B 92.982 114 8 0 1 114 664800972 664800859 1.950000e-37 167.0
27 TraesCS5A01G513800 chr3D 92.241 116 9 0 1 116 302228184 302228069 7.010000e-37 165.0
28 TraesCS5A01G513800 chr3D 91.379 116 10 0 1 116 368346119 368346004 3.260000e-35 159.0
29 TraesCS5A01G513800 chr2D 92.241 116 9 0 1 116 587279364 587279249 7.010000e-37 165.0
30 TraesCS5A01G513800 chr2D 94.286 35 2 0 2009 2043 64602373 64602407 2.000000e-03 54.7
31 TraesCS5A01G513800 chr5D 92.174 115 8 1 1 115 83262640 83262753 9.060000e-36 161.0
32 TraesCS5A01G513800 chr5D 92.500 40 3 0 2007 2046 398772717 398772678 1.220000e-04 58.4
33 TraesCS5A01G513800 chrUn 90.756 119 10 1 1 118 99638040 99638158 1.170000e-34 158.0
34 TraesCS5A01G513800 chrUn 100.000 28 0 0 2007 2034 81451415 81451442 6.000000e-03 52.8
35 TraesCS5A01G513800 chr7D 95.349 86 3 1 2778 2862 156686500 156686585 5.490000e-28 135.0
36 TraesCS5A01G513800 chr6B 92.135 89 5 2 2779 2866 705318118 705318031 1.190000e-24 124.0
37 TraesCS5A01G513800 chr6B 90.588 85 7 1 2779 2862 114900618 114900702 9.260000e-21 111.0
38 TraesCS5A01G513800 chr6B 90.244 41 4 0 2007 2047 161351270 161351230 2.000000e-03 54.7
39 TraesCS5A01G513800 chr1B 93.023 86 5 1 2778 2862 186799336 186799421 1.190000e-24 124.0
40 TraesCS5A01G513800 chr1B 90.244 41 4 0 2007 2047 22328178 22328218 2.000000e-03 54.7
41 TraesCS5A01G513800 chr2B 92.941 85 5 1 2779 2862 736884100 736884184 4.280000e-24 122.0
42 TraesCS5A01G513800 chr2B 100.000 28 0 0 2009 2036 101424021 101424048 6.000000e-03 52.8
43 TraesCS5A01G513800 chr2B 100.000 28 0 0 2009 2036 101434452 101434479 6.000000e-03 52.8
44 TraesCS5A01G513800 chr4A 91.765 85 6 1 2779 2862 719098208 719098292 1.990000e-22 117.0
45 TraesCS5A01G513800 chr3A 87.640 89 10 1 2779 2866 118402021 118401933 5.570000e-18 102.0
46 TraesCS5A01G513800 chr6A 86.517 89 10 2 2779 2866 49589935 49589848 2.590000e-16 97.1
47 TraesCS5A01G513800 chr2A 85.106 94 12 2 2770 2862 773942467 773942559 9.320000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G513800 chr5A 677671986 677675143 3157 True 5832.000000 5832 100.0000 1 3158 1 chr5A.!!$R1 3157
1 TraesCS5A01G513800 chr5A 677777681 677778554 873 True 817.000000 817 83.8040 894 1798 1 chr5A.!!$R3 904
2 TraesCS5A01G513800 chr5A 677726438 677727326 888 True 603.000000 603 80.0420 889 1798 1 chr5A.!!$R2 909
3 TraesCS5A01G513800 chr4B 638421211 638424229 3018 True 744.250000 1291 85.5965 70 3157 4 chr4B.!!$R2 3087
4 TraesCS5A01G513800 chr4B 638369011 638369948 937 True 341.000000 556 86.6690 905 1903 2 chr4B.!!$R1 998
5 TraesCS5A01G513800 chr4D 497495438 497496576 1138 True 650.000000 1122 87.8820 795 1973 2 chr4D.!!$R6 1178
6 TraesCS5A01G513800 chr4D 497466817 497467942 1125 True 645.500000 1109 87.8245 839 1973 2 chr4D.!!$R5 1134
7 TraesCS5A01G513800 chr4D 497561771 497562825 1054 True 610.000000 1048 90.9310 796 1928 2 chr4D.!!$R8 1132
8 TraesCS5A01G513800 chr4D 497513085 497515231 2146 True 590.725000 1225 88.6540 894 3158 4 chr4D.!!$R7 2264
9 TraesCS5A01G513800 chr4D 497603034 497603558 524 True 558.000000 558 86.2000 1 517 1 chr4D.!!$R3 516
10 TraesCS5A01G513800 chr4D 497545901 497546491 590 True 422.000000 422 80.2960 2196 2780 1 chr4D.!!$R2 584
11 TraesCS5A01G513800 chr4D 497450936 497452952 2016 True 210.666667 298 86.0090 889 1798 3 chr4D.!!$R4 909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
835 901 0.234106 GCCACGAGAATGCATGATCG 59.766 55.0 24.45 24.45 40.86 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2780 4389 0.251165 ACATTTTGGGACGGTGGGAG 60.251 55.0 0.0 0.0 0.0 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
29 30 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
30 31 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
31 32 6.703607 ACGGAGCAAAATGAGTGAATCTATAG 59.296 38.462 0.00 0.00 0.00 1.31
32 33 6.703607 CGGAGCAAAATGAGTGAATCTATAGT 59.296 38.462 0.00 0.00 0.00 2.12
33 34 7.095857 CGGAGCAAAATGAGTGAATCTATAGTC 60.096 40.741 0.00 0.00 0.00 2.59
34 35 7.930865 GGAGCAAAATGAGTGAATCTATAGTCT 59.069 37.037 0.00 0.00 0.00 3.24
35 36 9.973450 GAGCAAAATGAGTGAATCTATAGTCTA 57.027 33.333 0.00 0.00 0.00 2.59
126 127 1.151413 AGGGAGTAGTGTCCTTTGGGA 59.849 52.381 0.00 0.00 39.70 4.37
130 131 4.262617 GGAGTAGTGTCCTTTGGGATTTC 58.737 47.826 0.00 0.00 44.33 2.17
132 133 5.515008 GGAGTAGTGTCCTTTGGGATTTCTT 60.515 44.000 0.00 0.00 44.33 2.52
133 134 5.316987 AGTAGTGTCCTTTGGGATTTCTTG 58.683 41.667 0.00 0.00 44.33 3.02
134 135 3.500343 AGTGTCCTTTGGGATTTCTTGG 58.500 45.455 0.00 0.00 44.33 3.61
139 140 5.163353 TGTCCTTTGGGATTTCTTGGTTTTC 60.163 40.000 0.00 0.00 44.33 2.29
140 141 4.346709 TCCTTTGGGATTTCTTGGTTTTCC 59.653 41.667 0.00 0.00 36.57 3.13
312 316 8.192774 TGGAACATTTTCTGAATGATATGAAGC 58.807 33.333 5.82 0.00 31.71 3.86
314 318 9.234384 GAACATTTTCTGAATGATATGAAGCTG 57.766 33.333 5.82 0.00 0.00 4.24
332 336 8.208718 TGAAGCTGATTATTTAAACTATGCGT 57.791 30.769 0.00 0.00 0.00 5.24
333 337 8.335356 TGAAGCTGATTATTTAAACTATGCGTC 58.665 33.333 0.00 0.28 0.00 5.19
404 408 8.883789 TTAAAACGTGTGAAGTTTAGTTTCAG 57.116 30.769 0.00 0.00 40.49 3.02
424 428 9.754382 GTTTCAGATGCCACATATATTTTTGAT 57.246 29.630 0.00 0.00 0.00 2.57
431 435 8.298729 TGCCACATATATTTTTGATTGGTGTA 57.701 30.769 0.00 0.00 0.00 2.90
527 580 1.083489 TTAAATGTCTCGCGGGCAAG 58.917 50.000 6.13 0.00 31.28 4.01
538 591 0.811281 GCGGGCAAGACTTTTATGCT 59.189 50.000 0.00 0.00 39.94 3.79
549 602 7.382218 GCAAGACTTTTATGCTGTGTTAACATT 59.618 33.333 12.26 0.00 37.12 2.71
686 740 8.321650 ACTAATGAAGAAGCAGAGAAGAAAAG 57.678 34.615 0.00 0.00 0.00 2.27
687 741 5.625921 ATGAAGAAGCAGAGAAGAAAAGC 57.374 39.130 0.00 0.00 0.00 3.51
692 746 3.118905 AGCAGAGAAGAAAAGCGAACT 57.881 42.857 0.00 0.00 0.00 3.01
702 756 3.624861 AGAAAAGCGAACTATCATGCAGG 59.375 43.478 0.00 0.00 0.00 4.85
706 760 1.869767 GCGAACTATCATGCAGGAAGG 59.130 52.381 4.62 3.67 0.00 3.46
707 761 2.483714 GCGAACTATCATGCAGGAAGGA 60.484 50.000 4.62 0.00 0.00 3.36
728 782 3.618690 ACTTTGTGCCTGTCCTCTATC 57.381 47.619 0.00 0.00 0.00 2.08
731 785 2.073252 TGTGCCTGTCCTCTATCGAT 57.927 50.000 2.16 2.16 0.00 3.59
732 786 1.683385 TGTGCCTGTCCTCTATCGATG 59.317 52.381 8.54 0.00 0.00 3.84
737 791 3.226777 CCTGTCCTCTATCGATGGAACT 58.773 50.000 12.86 0.00 0.00 3.01
739 793 4.261825 CCTGTCCTCTATCGATGGAACTTC 60.262 50.000 12.86 4.83 0.00 3.01
743 797 2.965831 CTCTATCGATGGAACTTCCCCA 59.034 50.000 12.86 0.00 35.03 4.96
745 799 3.973973 TCTATCGATGGAACTTCCCCAAT 59.026 43.478 9.27 0.00 37.22 3.16
746 800 2.710096 TCGATGGAACTTCCCCAATC 57.290 50.000 5.30 1.57 37.22 2.67
747 801 2.196595 TCGATGGAACTTCCCCAATCT 58.803 47.619 5.30 0.00 37.22 2.40
748 802 3.380393 TCGATGGAACTTCCCCAATCTA 58.620 45.455 5.30 0.00 37.22 1.98
749 803 3.973973 TCGATGGAACTTCCCCAATCTAT 59.026 43.478 5.30 0.00 37.22 1.98
750 804 5.152193 TCGATGGAACTTCCCCAATCTATA 58.848 41.667 5.30 0.00 37.22 1.31
751 805 5.785423 TCGATGGAACTTCCCCAATCTATAT 59.215 40.000 5.30 0.00 37.22 0.86
752 806 6.070767 TCGATGGAACTTCCCCAATCTATATC 60.071 42.308 5.30 0.00 37.22 1.63
753 807 6.070538 CGATGGAACTTCCCCAATCTATATCT 60.071 42.308 5.30 0.00 37.22 1.98
754 808 7.124298 CGATGGAACTTCCCCAATCTATATCTA 59.876 40.741 5.30 0.00 37.22 1.98
755 809 8.940012 ATGGAACTTCCCCAATCTATATCTAT 57.060 34.615 5.30 0.00 37.22 1.98
756 810 8.150827 TGGAACTTCCCCAATCTATATCTATG 57.849 38.462 5.30 0.00 35.03 2.23
757 811 7.051000 GGAACTTCCCCAATCTATATCTATGC 58.949 42.308 0.00 0.00 0.00 3.14
758 812 7.092668 GGAACTTCCCCAATCTATATCTATGCT 60.093 40.741 0.00 0.00 0.00 3.79
759 813 7.821134 ACTTCCCCAATCTATATCTATGCTT 57.179 36.000 0.00 0.00 0.00 3.91
760 814 7.856415 ACTTCCCCAATCTATATCTATGCTTC 58.144 38.462 0.00 0.00 0.00 3.86
761 815 7.682028 ACTTCCCCAATCTATATCTATGCTTCT 59.318 37.037 0.00 0.00 0.00 2.85
762 816 7.429374 TCCCCAATCTATATCTATGCTTCTG 57.571 40.000 0.00 0.00 0.00 3.02
763 817 6.385176 TCCCCAATCTATATCTATGCTTCTGG 59.615 42.308 0.00 0.00 0.00 3.86
764 818 6.054295 CCCAATCTATATCTATGCTTCTGGC 58.946 44.000 0.00 0.00 42.22 4.85
765 819 6.126825 CCCAATCTATATCTATGCTTCTGGCT 60.127 42.308 0.00 0.00 42.39 4.75
766 820 7.337167 CCAATCTATATCTATGCTTCTGGCTT 58.663 38.462 0.00 0.00 42.39 4.35
767 821 7.828223 CCAATCTATATCTATGCTTCTGGCTTT 59.172 37.037 0.00 0.00 42.39 3.51
768 822 9.881649 CAATCTATATCTATGCTTCTGGCTTTA 57.118 33.333 0.00 0.00 42.39 1.85
769 823 9.883142 AATCTATATCTATGCTTCTGGCTTTAC 57.117 33.333 0.00 0.00 42.39 2.01
770 824 8.657387 TCTATATCTATGCTTCTGGCTTTACT 57.343 34.615 0.00 0.00 42.39 2.24
771 825 9.755122 TCTATATCTATGCTTCTGGCTTTACTA 57.245 33.333 0.00 0.00 42.39 1.82
775 829 8.807948 ATCTATGCTTCTGGCTTTACTAAAAA 57.192 30.769 0.00 0.00 42.39 1.94
835 901 0.234106 GCCACGAGAATGCATGATCG 59.766 55.000 24.45 24.45 40.86 3.69
862 928 2.361119 TCGCGCTGTAGTAGATTCCAAT 59.639 45.455 5.56 0.00 0.00 3.16
863 929 2.726760 CGCGCTGTAGTAGATTCCAATC 59.273 50.000 5.56 0.00 35.64 2.67
917 989 2.335011 CGACACGACTCACCTGCA 59.665 61.111 0.00 0.00 0.00 4.41
967 1042 4.767255 CCGTGCTCAGCCCCAGTC 62.767 72.222 0.00 0.00 0.00 3.51
968 1043 4.767255 CGTGCTCAGCCCCAGTCC 62.767 72.222 0.00 0.00 0.00 3.85
1011 1129 1.079750 GTCCACTCGTCAAGCTCCC 60.080 63.158 0.00 0.00 0.00 4.30
1070 1210 3.108343 CACCTCGCCGAGTACGAT 58.892 61.111 13.83 0.00 42.66 3.73
1159 1299 1.079405 GCGTCGGTCATTCCTTCCA 60.079 57.895 0.00 0.00 0.00 3.53
1198 1347 0.533491 TTCATCGACTTGTACCCCCG 59.467 55.000 0.00 0.00 0.00 5.73
1379 1603 2.126965 GACGAGTCGGTGTCGGTG 60.127 66.667 18.30 0.00 41.88 4.94
1380 1604 2.592574 ACGAGTCGGTGTCGGTGA 60.593 61.111 18.30 0.00 41.88 4.02
1381 1605 1.919956 GACGAGTCGGTGTCGGTGAT 61.920 60.000 18.30 0.00 41.88 3.06
1382 1606 1.226323 CGAGTCGGTGTCGGTGATC 60.226 63.158 4.10 0.00 36.95 2.92
1383 1607 1.880894 GAGTCGGTGTCGGTGATCA 59.119 57.895 0.00 0.00 36.95 2.92
1384 1608 0.456312 GAGTCGGTGTCGGTGATCAC 60.456 60.000 17.91 17.91 36.95 3.06
1498 1722 2.435586 GCTGAGTGCGTGCTCCAT 60.436 61.111 6.04 0.00 34.74 3.41
1586 1819 2.360350 CCATGGAAGGTGCTGCGT 60.360 61.111 5.56 0.00 0.00 5.24
1590 1823 1.244019 ATGGAAGGTGCTGCGTTTCC 61.244 55.000 17.48 17.48 0.00 3.13
1598 1831 3.056313 GCTGCGTTTCCTGATGCCC 62.056 63.158 0.00 0.00 0.00 5.36
1756 3196 2.159787 GCGTAAGTGCATCTCAACAGTG 60.160 50.000 0.00 0.00 41.68 3.66
1761 3201 2.780643 CATCTCAACAGTGGCGCG 59.219 61.111 0.00 0.00 0.00 6.86
1785 3225 3.776849 TGCACACGCGCTCATTCG 61.777 61.111 5.73 0.00 42.97 3.34
1833 3310 3.880846 GGGGATTCGCGCTTGCTG 61.881 66.667 5.56 0.00 36.08 4.41
1834 3311 2.819595 GGGATTCGCGCTTGCTGA 60.820 61.111 5.56 0.00 36.08 4.26
1835 3312 2.182842 GGGATTCGCGCTTGCTGAT 61.183 57.895 5.56 0.00 36.08 2.90
1836 3313 1.718757 GGGATTCGCGCTTGCTGATT 61.719 55.000 5.56 0.00 36.08 2.57
1853 3330 9.378597 CTTGCTGATTAATGAGTAATTTCATCG 57.621 33.333 5.96 0.00 36.81 3.84
2186 3732 6.213195 TGAAAATGGTATTGGAAGCCTTGATT 59.787 34.615 0.00 0.00 0.00 2.57
2242 3788 2.697751 ACACATTTACAAGGCTTGCCAA 59.302 40.909 26.45 18.83 0.00 4.52
2243 3789 3.059166 CACATTTACAAGGCTTGCCAAC 58.941 45.455 26.45 0.00 0.00 3.77
2244 3790 2.965147 ACATTTACAAGGCTTGCCAACT 59.035 40.909 26.45 12.26 0.00 3.16
2290 3838 9.691362 TCAAAGAGAAATAAAATGCTTGTAACC 57.309 29.630 0.00 0.00 0.00 2.85
2314 3870 8.324306 ACCTATAGTTGTAAAAACTTAGGGGAC 58.676 37.037 19.30 0.00 36.48 4.46
2323 3879 0.912486 ACTTAGGGGACAGATGCCAC 59.088 55.000 0.00 0.00 38.32 5.01
2371 3927 7.201350 GCATGCTTCTGTAAAATTTTAACCGAG 60.201 37.037 11.37 9.40 0.00 4.63
2393 3949 4.096382 AGGCCATATTCAAAACGTCATGTC 59.904 41.667 5.01 0.00 0.00 3.06
2413 3969 5.470368 TGTCTTTGTGATACGAAGGAAGAG 58.530 41.667 8.62 0.00 39.52 2.85
2415 3971 5.927115 GTCTTTGTGATACGAAGGAAGAGTT 59.073 40.000 8.62 0.00 39.52 3.01
2463 4021 4.362279 TCTTTAAGTGGTCGTGTGTGTAC 58.638 43.478 0.00 0.00 0.00 2.90
2471 4029 0.249114 TCGTGTGTGTACGTGTGCAT 60.249 50.000 0.00 0.00 44.06 3.96
2473 4031 0.934496 GTGTGTGTACGTGTGCATGT 59.066 50.000 0.00 2.46 0.00 3.21
2491 4049 5.049129 TGCATGTGTGTTACGAAATGATTCA 60.049 36.000 0.00 0.00 35.15 2.57
2492 4050 6.029607 GCATGTGTGTTACGAAATGATTCAT 58.970 36.000 0.00 0.00 35.15 2.57
2520 4078 4.348168 ATGTGAGTATGTACTCCCATTCCC 59.652 45.833 15.52 0.00 45.07 3.97
2521 4079 6.696129 ATGTGAGTATGTACTCCCATTCCCC 61.696 48.000 15.52 0.00 45.07 4.81
2525 4083 1.268992 TGTACTCCCATTCCCCCACG 61.269 60.000 0.00 0.00 0.00 4.94
2626 4230 8.540492 GTTGTACGGAAAAGATATATGTGACAG 58.460 37.037 0.00 0.00 0.00 3.51
2712 4321 3.887352 TCACCTAGCTCTTCGTATCACT 58.113 45.455 0.00 0.00 0.00 3.41
2713 4322 3.628032 TCACCTAGCTCTTCGTATCACTG 59.372 47.826 0.00 0.00 0.00 3.66
2720 4329 3.929610 GCTCTTCGTATCACTGCTTCTTT 59.070 43.478 0.00 0.00 0.00 2.52
2722 4331 5.669848 GCTCTTCGTATCACTGCTTCTTTTG 60.670 44.000 0.00 0.00 0.00 2.44
2725 4334 6.926826 TCTTCGTATCACTGCTTCTTTTGTTA 59.073 34.615 0.00 0.00 0.00 2.41
2726 4335 7.439955 TCTTCGTATCACTGCTTCTTTTGTTAA 59.560 33.333 0.00 0.00 0.00 2.01
2727 4336 7.485418 TCGTATCACTGCTTCTTTTGTTAAA 57.515 32.000 0.00 0.00 0.00 1.52
2728 4337 7.921787 TCGTATCACTGCTTCTTTTGTTAAAA 58.078 30.769 0.00 0.00 0.00 1.52
2729 4338 8.399425 TCGTATCACTGCTTCTTTTGTTAAAAA 58.601 29.630 0.00 0.00 34.17 1.94
2790 4399 6.997239 ATTTTAAATTCTACTCCCACCGTC 57.003 37.500 0.00 0.00 0.00 4.79
2791 4400 4.476628 TTAAATTCTACTCCCACCGTCC 57.523 45.455 0.00 0.00 0.00 4.79
2792 4401 1.201424 AATTCTACTCCCACCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
2793 4402 0.042131 ATTCTACTCCCACCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2797 4406 1.280998 CTACTCCCACCGTCCCAAAAT 59.719 52.381 0.00 0.00 0.00 1.82
2798 4407 0.251165 ACTCCCACCGTCCCAAAATG 60.251 55.000 0.00 0.00 0.00 2.32
2799 4408 0.251165 CTCCCACCGTCCCAAAATGT 60.251 55.000 0.00 0.00 0.00 2.71
2801 4410 1.424302 TCCCACCGTCCCAAAATGTAA 59.576 47.619 0.00 0.00 0.00 2.41
2804 4413 3.352648 CCACCGTCCCAAAATGTAAGAT 58.647 45.455 0.00 0.00 0.00 2.40
2805 4414 3.128589 CCACCGTCCCAAAATGTAAGATG 59.871 47.826 0.00 0.00 0.00 2.90
2806 4415 3.756434 CACCGTCCCAAAATGTAAGATGT 59.244 43.478 0.00 0.00 0.00 3.06
2807 4416 4.217550 CACCGTCCCAAAATGTAAGATGTT 59.782 41.667 0.00 0.00 0.00 2.71
2808 4417 4.830600 ACCGTCCCAAAATGTAAGATGTTT 59.169 37.500 0.00 0.00 0.00 2.83
2809 4418 5.303333 ACCGTCCCAAAATGTAAGATGTTTT 59.697 36.000 0.00 0.00 0.00 2.43
2810 4419 6.183360 ACCGTCCCAAAATGTAAGATGTTTTT 60.183 34.615 0.00 0.00 0.00 1.94
2835 4444 7.821595 TGACACTACCATAGTATCAAAAACG 57.178 36.000 0.00 0.00 39.11 3.60
2836 4445 7.380536 TGACACTACCATAGTATCAAAAACGT 58.619 34.615 0.00 0.00 39.11 3.99
2837 4446 7.543172 TGACACTACCATAGTATCAAAAACGTC 59.457 37.037 0.00 0.00 39.11 4.34
2838 4447 7.609056 ACACTACCATAGTATCAAAAACGTCT 58.391 34.615 0.00 0.00 37.23 4.18
2839 4448 8.092687 ACACTACCATAGTATCAAAAACGTCTT 58.907 33.333 0.00 0.00 37.23 3.01
2840 4449 9.577110 CACTACCATAGTATCAAAAACGTCTTA 57.423 33.333 0.00 0.00 37.23 2.10
2841 4450 9.578439 ACTACCATAGTATCAAAAACGTCTTAC 57.422 33.333 0.00 0.00 37.23 2.34
2842 4451 9.577110 CTACCATAGTATCAAAAACGTCTTACA 57.423 33.333 0.00 0.00 0.00 2.41
2844 4453 9.444600 ACCATAGTATCAAAAACGTCTTACATT 57.555 29.630 0.00 0.00 0.00 2.71
2848 4457 7.515643 AGTATCAAAAACGTCTTACATTTCGG 58.484 34.615 0.00 0.00 0.00 4.30
2849 4458 5.098218 TCAAAAACGTCTTACATTTCGGG 57.902 39.130 0.00 0.00 0.00 5.14
2850 4459 4.815308 TCAAAAACGTCTTACATTTCGGGA 59.185 37.500 0.00 0.00 0.00 5.14
2851 4460 4.737353 AAAACGTCTTACATTTCGGGAC 57.263 40.909 0.00 0.00 0.00 4.46
2902 4511 6.623767 GCGAAAAGGAGAGCACATTTCTTAAT 60.624 38.462 0.00 0.00 0.00 1.40
3030 4667 3.172229 TGAGTGACGAATCAACACACA 57.828 42.857 8.85 6.31 36.31 3.72
3034 4671 4.883083 AGTGACGAATCAACACACACTAT 58.117 39.130 0.00 0.00 36.31 2.12
3036 4673 4.923871 GTGACGAATCAACACACACTATCT 59.076 41.667 0.00 0.00 36.31 1.98
3037 4674 6.072119 AGTGACGAATCAACACACACTATCTA 60.072 38.462 0.00 0.00 36.31 1.98
3038 4675 6.752351 GTGACGAATCAACACACACTATCTAT 59.248 38.462 0.00 0.00 36.31 1.98
3039 4676 7.913821 GTGACGAATCAACACACACTATCTATA 59.086 37.037 0.00 0.00 36.31 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 106 1.985895 CCCAAAGGACACTACTCCCTT 59.014 52.381 0.00 0.00 41.70 3.95
176 180 7.883391 TCTAGGTGTACAAAATTGGAAAACA 57.117 32.000 0.00 0.00 0.00 2.83
177 181 8.626526 TCTTCTAGGTGTACAAAATTGGAAAAC 58.373 33.333 0.00 0.00 0.00 2.43
181 185 8.934023 AAATCTTCTAGGTGTACAAAATTGGA 57.066 30.769 0.00 0.00 0.00 3.53
268 272 7.678947 TGTTCCATGTGTGTTTGAAAATTTT 57.321 28.000 2.28 2.28 0.00 1.82
270 274 7.862512 AATGTTCCATGTGTGTTTGAAAATT 57.137 28.000 0.00 0.00 0.00 1.82
271 275 7.862512 AAATGTTCCATGTGTGTTTGAAAAT 57.137 28.000 0.00 0.00 0.00 1.82
287 291 8.411683 AGCTTCATATCATTCAGAAAATGTTCC 58.588 33.333 0.00 0.00 33.92 3.62
291 295 9.967346 AATCAGCTTCATATCATTCAGAAAATG 57.033 29.630 0.00 0.00 0.00 2.32
377 381 9.674824 TGAAACTAAACTTCACACGTTTTAAAA 57.325 25.926 0.00 0.00 36.18 1.52
378 382 9.332301 CTGAAACTAAACTTCACACGTTTTAAA 57.668 29.630 0.00 0.00 36.18 1.52
379 383 8.719648 TCTGAAACTAAACTTCACACGTTTTAA 58.280 29.630 0.00 0.00 36.18 1.52
380 384 8.254178 TCTGAAACTAAACTTCACACGTTTTA 57.746 30.769 0.00 0.00 36.18 1.52
381 385 7.136289 TCTGAAACTAAACTTCACACGTTTT 57.864 32.000 0.00 0.00 36.18 2.43
386 390 5.008613 TGGCATCTGAAACTAAACTTCACAC 59.991 40.000 0.00 0.00 0.00 3.82
397 401 8.970020 TCAAAAATATATGTGGCATCTGAAACT 58.030 29.630 0.00 0.00 0.00 2.66
404 408 7.927629 ACACCAATCAAAAATATATGTGGCATC 59.072 33.333 0.00 0.00 0.00 3.91
518 571 0.523335 GCATAAAAGTCTTGCCCGCG 60.523 55.000 0.00 0.00 0.00 6.46
523 576 6.205784 TGTTAACACAGCATAAAAGTCTTGC 58.794 36.000 3.59 0.00 36.63 4.01
653 707 9.778741 TCTCTGCTTCTTCATTAGTTCTTTTTA 57.221 29.630 0.00 0.00 0.00 1.52
658 712 7.238486 TCTTCTCTGCTTCTTCATTAGTTCT 57.762 36.000 0.00 0.00 0.00 3.01
686 740 1.869767 CCTTCCTGCATGATAGTTCGC 59.130 52.381 0.00 0.00 0.00 4.70
687 741 3.459232 TCCTTCCTGCATGATAGTTCG 57.541 47.619 0.00 0.00 0.00 3.95
692 746 4.701651 CACAAAGTTCCTTCCTGCATGATA 59.298 41.667 0.00 0.00 0.00 2.15
702 756 1.609072 GGACAGGCACAAAGTTCCTTC 59.391 52.381 0.00 0.00 23.85 3.46
706 760 2.262423 AGAGGACAGGCACAAAGTTC 57.738 50.000 0.00 0.00 0.00 3.01
707 761 3.617531 CGATAGAGGACAGGCACAAAGTT 60.618 47.826 0.00 0.00 39.76 2.66
712 766 3.588742 TCGATAGAGGACAGGCACA 57.411 52.632 0.00 0.00 42.67 4.57
728 782 2.717639 AGATTGGGGAAGTTCCATCG 57.282 50.000 23.33 0.00 38.64 3.84
731 785 7.311297 GCATAGATATAGATTGGGGAAGTTCCA 60.311 40.741 23.33 3.43 38.64 3.53
732 786 7.051000 GCATAGATATAGATTGGGGAAGTTCC 58.949 42.308 13.99 13.99 35.23 3.62
737 791 7.092712 CCAGAAGCATAGATATAGATTGGGGAA 60.093 40.741 0.00 0.00 0.00 3.97
739 793 6.590068 CCAGAAGCATAGATATAGATTGGGG 58.410 44.000 0.00 0.00 0.00 4.96
776 830 1.885887 TGCGCCAGAAGCATACTTTTT 59.114 42.857 4.18 0.00 44.04 1.94
777 831 1.200020 GTGCGCCAGAAGCATACTTTT 59.800 47.619 4.18 0.00 46.96 2.27
778 832 0.804989 GTGCGCCAGAAGCATACTTT 59.195 50.000 4.18 0.00 46.96 2.66
779 833 1.026718 GGTGCGCCAGAAGCATACTT 61.027 55.000 12.58 0.00 46.96 2.24
780 834 1.450312 GGTGCGCCAGAAGCATACT 60.450 57.895 12.58 0.00 46.96 2.12
824 890 1.765161 CGACGCCACGATCATGCATT 61.765 55.000 0.00 0.00 35.09 3.56
877 943 3.077359 CTGGTGAAAATCCGCTTCTTCT 58.923 45.455 0.00 0.00 0.00 2.85
881 951 1.128692 CGTCTGGTGAAAATCCGCTTC 59.871 52.381 0.00 0.00 0.00 3.86
892 962 0.816421 TGAGTCGTGTCGTCTGGTGA 60.816 55.000 0.00 0.00 0.00 4.02
1070 1210 0.034896 GCCACCCGAAGAAGAAGTCA 59.965 55.000 0.00 0.00 0.00 3.41
1140 1280 1.814169 GGAAGGAATGACCGACGCC 60.814 63.158 0.00 0.00 44.74 5.68
1159 1299 1.893801 AGGAGGACGACGTTGAGATTT 59.106 47.619 10.51 0.00 0.00 2.17
1198 1347 1.661743 CGATGGAGAAGAGATCGTCGC 60.662 57.143 0.00 0.00 35.38 5.19
1384 1608 2.544694 GCAGAGTGATGATACCGACTGG 60.545 54.545 0.00 0.00 42.84 4.00
1385 1609 2.736978 GCAGAGTGATGATACCGACTG 58.263 52.381 0.00 0.00 0.00 3.51
1386 1610 1.335182 CGCAGAGTGATGATACCGACT 59.665 52.381 0.00 0.00 0.00 4.18
1387 1611 1.600663 CCGCAGAGTGATGATACCGAC 60.601 57.143 0.00 0.00 0.00 4.79
1388 1612 0.668535 CCGCAGAGTGATGATACCGA 59.331 55.000 0.00 0.00 0.00 4.69
1389 1613 0.668535 TCCGCAGAGTGATGATACCG 59.331 55.000 0.00 0.00 0.00 4.02
1390 1614 1.600663 CGTCCGCAGAGTGATGATACC 60.601 57.143 0.00 0.00 0.00 2.73
1391 1615 1.759994 CGTCCGCAGAGTGATGATAC 58.240 55.000 0.00 0.00 0.00 2.24
1392 1616 0.030773 GCGTCCGCAGAGTGATGATA 59.969 55.000 6.82 0.00 41.49 2.15
1393 1617 1.227089 GCGTCCGCAGAGTGATGAT 60.227 57.895 6.82 0.00 41.49 2.45
1394 1618 2.181777 GCGTCCGCAGAGTGATGA 59.818 61.111 6.82 0.00 41.49 2.92
1586 1819 0.623723 GGTACAGGGGCATCAGGAAA 59.376 55.000 0.00 0.00 0.00 3.13
1590 1823 1.622607 TTCCGGTACAGGGGCATCAG 61.623 60.000 12.41 0.00 0.00 2.90
1598 1831 1.614241 CCCTGACCTTCCGGTACAGG 61.614 65.000 19.61 19.61 45.73 4.00
1711 1971 4.471025 TGGACTTCTTGCAATAGAGGATGA 59.529 41.667 13.80 0.00 0.00 2.92
1816 3293 3.880846 CAGCAAGCGCGAATCCCC 61.881 66.667 12.10 0.00 45.49 4.81
1817 3294 1.718757 AATCAGCAAGCGCGAATCCC 61.719 55.000 12.10 0.00 45.49 3.85
1819 3296 2.737467 TTAATCAGCAAGCGCGAATC 57.263 45.000 12.10 0.00 45.49 2.52
1822 3299 1.594397 CTCATTAATCAGCAAGCGCGA 59.406 47.619 12.10 0.00 45.49 5.87
1823 3300 1.328680 ACTCATTAATCAGCAAGCGCG 59.671 47.619 0.00 0.00 45.49 6.86
1825 3302 7.188834 TGAAATTACTCATTAATCAGCAAGCG 58.811 34.615 0.00 0.00 29.39 4.68
1826 3303 9.178427 GATGAAATTACTCATTAATCAGCAAGC 57.822 33.333 0.00 0.00 36.15 4.01
1827 3304 9.378597 CGATGAAATTACTCATTAATCAGCAAG 57.621 33.333 0.00 0.00 36.15 4.01
1828 3305 7.857389 GCGATGAAATTACTCATTAATCAGCAA 59.143 33.333 0.00 0.00 36.15 3.91
1829 3306 7.227314 AGCGATGAAATTACTCATTAATCAGCA 59.773 33.333 0.00 0.00 36.15 4.41
1830 3307 7.533222 CAGCGATGAAATTACTCATTAATCAGC 59.467 37.037 0.00 0.00 36.15 4.26
1831 3308 8.554528 ACAGCGATGAAATTACTCATTAATCAG 58.445 33.333 8.12 0.00 36.15 2.90
1833 3310 9.722056 AAACAGCGATGAAATTACTCATTAATC 57.278 29.630 8.12 0.00 36.15 1.75
1834 3311 9.722056 GAAACAGCGATGAAATTACTCATTAAT 57.278 29.630 8.12 0.00 36.15 1.40
1835 3312 8.726068 TGAAACAGCGATGAAATTACTCATTAA 58.274 29.630 8.12 0.00 36.15 1.40
1836 3313 8.262715 TGAAACAGCGATGAAATTACTCATTA 57.737 30.769 8.12 0.00 36.15 1.90
1853 3330 1.271597 ACACCTGATCCCTGAAACAGC 60.272 52.381 0.00 0.00 0.00 4.40
1906 3385 6.574350 AGATAACCTGTCACGGATTTAGAAG 58.426 40.000 0.00 0.00 0.00 2.85
2034 3578 5.435686 TTGTTACATGCTACCTCCATCTT 57.564 39.130 0.00 0.00 0.00 2.40
2224 3770 3.665745 AGTTGGCAAGCCTTGTAAATG 57.334 42.857 12.96 0.00 36.94 2.32
2290 3838 9.379791 CTGTCCCCTAAGTTTTTACAACTATAG 57.620 37.037 0.00 0.00 0.00 1.31
2371 3927 4.096382 AGACATGACGTTTTGAATATGGCC 59.904 41.667 0.00 0.00 0.00 5.36
2393 3949 5.696724 ACAACTCTTCCTTCGTATCACAAAG 59.303 40.000 0.00 0.00 0.00 2.77
2413 3969 8.181573 CACAATACAAAGACCATACCATACAAC 58.818 37.037 0.00 0.00 0.00 3.32
2415 3971 7.398829 ACACAATACAAAGACCATACCATACA 58.601 34.615 0.00 0.00 0.00 2.29
2448 4004 0.526096 ACACGTACACACACGACCAC 60.526 55.000 2.26 0.00 44.69 4.16
2463 4021 0.855995 TCGTAACACACATGCACACG 59.144 50.000 0.00 0.00 0.00 4.49
2471 4029 8.317891 AGTAATGAATCATTTCGTAACACACA 57.682 30.769 14.15 0.00 35.54 3.72
2516 4074 3.717392 TGATTCATAATACCGTGGGGGAA 59.283 43.478 0.00 0.00 39.97 3.97
2520 4078 8.889717 GGTATAATTGATTCATAATACCGTGGG 58.110 37.037 12.89 0.00 0.00 4.61
2521 4079 9.443323 TGGTATAATTGATTCATAATACCGTGG 57.557 33.333 18.33 0.00 36.49 4.94
2588 4192 1.405121 CCGTACAACTCACTTAGGGGC 60.405 57.143 0.00 0.00 0.00 5.80
2626 4230 9.489084 TGCAACATCATATATACCTTGTCTTAC 57.511 33.333 0.00 0.00 0.00 2.34
2778 4387 1.003812 CATTTTGGGACGGTGGGAGTA 59.996 52.381 0.00 0.00 0.00 2.59
2780 4389 0.251165 ACATTTTGGGACGGTGGGAG 60.251 55.000 0.00 0.00 0.00 4.30
2781 4390 1.065647 TACATTTTGGGACGGTGGGA 58.934 50.000 0.00 0.00 0.00 4.37
2782 4391 1.816224 CTTACATTTTGGGACGGTGGG 59.184 52.381 0.00 0.00 0.00 4.61
2783 4392 2.785562 TCTTACATTTTGGGACGGTGG 58.214 47.619 0.00 0.00 0.00 4.61
2786 4395 5.385509 AAACATCTTACATTTTGGGACGG 57.614 39.130 0.00 0.00 0.00 4.79
2812 4421 7.758528 AGACGTTTTTGATACTATGGTAGTGTC 59.241 37.037 6.86 6.86 44.30 3.67
2813 4422 7.609056 AGACGTTTTTGATACTATGGTAGTGT 58.391 34.615 0.00 0.00 39.81 3.55
2814 4423 8.475331 AAGACGTTTTTGATACTATGGTAGTG 57.525 34.615 0.00 0.00 39.81 2.74
2815 4424 9.578439 GTAAGACGTTTTTGATACTATGGTAGT 57.422 33.333 0.00 0.00 42.68 2.73
2816 4425 9.577110 TGTAAGACGTTTTTGATACTATGGTAG 57.423 33.333 0.00 0.00 0.00 3.18
2818 4427 9.444600 AATGTAAGACGTTTTTGATACTATGGT 57.555 29.630 0.00 0.00 0.00 3.55
2822 4431 8.649841 CCGAAATGTAAGACGTTTTTGATACTA 58.350 33.333 0.00 0.00 37.43 1.82
2823 4432 7.360607 CCCGAAATGTAAGACGTTTTTGATACT 60.361 37.037 0.00 0.00 37.43 2.12
2824 4433 6.739550 CCCGAAATGTAAGACGTTTTTGATAC 59.260 38.462 0.00 0.00 37.43 2.24
2825 4434 6.649973 TCCCGAAATGTAAGACGTTTTTGATA 59.350 34.615 0.00 0.00 37.43 2.15
2826 4435 5.470777 TCCCGAAATGTAAGACGTTTTTGAT 59.529 36.000 0.00 0.00 37.43 2.57
2827 4436 4.815308 TCCCGAAATGTAAGACGTTTTTGA 59.185 37.500 0.00 0.00 37.43 2.69
2828 4437 4.907582 GTCCCGAAATGTAAGACGTTTTTG 59.092 41.667 0.00 0.00 37.43 2.44
2829 4438 4.318974 CGTCCCGAAATGTAAGACGTTTTT 60.319 41.667 0.00 0.00 43.89 1.94
2830 4439 3.184986 CGTCCCGAAATGTAAGACGTTTT 59.815 43.478 0.00 0.00 43.89 2.43
2831 4440 2.733026 CGTCCCGAAATGTAAGACGTTT 59.267 45.455 2.88 0.00 43.89 3.60
2832 4441 2.331194 CGTCCCGAAATGTAAGACGTT 58.669 47.619 2.88 0.00 43.89 3.99
2833 4442 1.403249 CCGTCCCGAAATGTAAGACGT 60.403 52.381 9.63 0.00 46.62 4.34
2835 4444 2.265683 GTCCGTCCCGAAATGTAAGAC 58.734 52.381 0.00 0.00 0.00 3.01
2836 4445 1.135315 CGTCCGTCCCGAAATGTAAGA 60.135 52.381 0.00 0.00 0.00 2.10
2837 4446 1.274596 CGTCCGTCCCGAAATGTAAG 58.725 55.000 0.00 0.00 0.00 2.34
2838 4447 0.108709 CCGTCCGTCCCGAAATGTAA 60.109 55.000 0.00 0.00 0.00 2.41
2839 4448 0.964860 TCCGTCCGTCCCGAAATGTA 60.965 55.000 0.00 0.00 0.00 2.29
2840 4449 2.221906 CTCCGTCCGTCCCGAAATGT 62.222 60.000 0.00 0.00 0.00 2.71
2841 4450 1.518572 CTCCGTCCGTCCCGAAATG 60.519 63.158 0.00 0.00 0.00 2.32
2842 4451 0.680921 TACTCCGTCCGTCCCGAAAT 60.681 55.000 0.00 0.00 0.00 2.17
2843 4452 0.893270 TTACTCCGTCCGTCCCGAAA 60.893 55.000 0.00 0.00 0.00 3.46
2844 4453 0.680921 ATTACTCCGTCCGTCCCGAA 60.681 55.000 0.00 0.00 0.00 4.30
2845 4454 0.680921 AATTACTCCGTCCGTCCCGA 60.681 55.000 0.00 0.00 0.00 5.14
2846 4455 0.174162 AAATTACTCCGTCCGTCCCG 59.826 55.000 0.00 0.00 0.00 5.14
2847 4456 3.740631 ATAAATTACTCCGTCCGTCCC 57.259 47.619 0.00 0.00 0.00 4.46
2848 4457 4.269363 CACAATAAATTACTCCGTCCGTCC 59.731 45.833 0.00 0.00 0.00 4.79
2849 4458 4.866486 ACACAATAAATTACTCCGTCCGTC 59.134 41.667 0.00 0.00 0.00 4.79
2850 4459 4.824289 ACACAATAAATTACTCCGTCCGT 58.176 39.130 0.00 0.00 0.00 4.69
2851 4460 5.232838 GGTACACAATAAATTACTCCGTCCG 59.767 44.000 0.00 0.00 0.00 4.79
2852 4461 6.108015 TGGTACACAATAAATTACTCCGTCC 58.892 40.000 0.00 0.00 0.00 4.79
2853 4462 6.238022 GCTGGTACACAATAAATTACTCCGTC 60.238 42.308 0.00 0.00 0.00 4.79
2854 4463 5.583457 GCTGGTACACAATAAATTACTCCGT 59.417 40.000 0.00 0.00 0.00 4.69
2855 4464 5.276678 CGCTGGTACACAATAAATTACTCCG 60.277 44.000 0.00 0.00 0.00 4.63
2856 4465 5.813672 TCGCTGGTACACAATAAATTACTCC 59.186 40.000 0.00 0.00 0.00 3.85
2857 4466 6.897259 TCGCTGGTACACAATAAATTACTC 57.103 37.500 0.00 0.00 0.00 2.59
2858 4467 7.675962 TTTCGCTGGTACACAATAAATTACT 57.324 32.000 0.00 0.00 0.00 2.24
2859 4468 7.483691 CCTTTTCGCTGGTACACAATAAATTAC 59.516 37.037 0.00 0.00 0.00 1.89
2970 4607 9.560860 TCCTCTGGCTGGATTATTCTTATATAA 57.439 33.333 0.00 0.00 0.00 0.98
3119 4756 7.420563 GCATGATCCCATACCCATCTATGATTA 60.421 40.741 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.