Multiple sequence alignment - TraesCS5A01G513300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G513300 chr5A 100.000 3559 0 0 1 3559 677132727 677129169 0.000000e+00 6573.0
1 TraesCS5A01G513300 chr5A 93.750 96 6 0 2598 2693 676970496 676970401 1.030000e-30 145.0
2 TraesCS5A01G513300 chr4D 87.104 1264 72 29 820 2032 497175164 497173941 0.000000e+00 1347.0
3 TraesCS5A01G513300 chr4D 91.060 783 58 10 25 801 497176173 497175397 0.000000e+00 1048.0
4 TraesCS5A01G513300 chr4D 88.151 903 68 20 2083 2972 497173920 497173044 0.000000e+00 1038.0
5 TraesCS5A01G513300 chr4B 85.358 1284 109 37 798 2032 637981261 637980008 0.000000e+00 1256.0
6 TraesCS5A01G513300 chr4B 92.395 789 44 7 2080 2866 637979990 637979216 0.000000e+00 1110.0
7 TraesCS5A01G513300 chr4B 87.207 641 65 11 167 801 637983366 637982737 0.000000e+00 713.0
8 TraesCS5A01G513300 chr4B 87.377 507 48 11 2487 2982 637743311 637742810 5.160000e-158 568.0
9 TraesCS5A01G513300 chr4B 78.070 228 38 10 465 682 242704605 242704830 2.230000e-27 134.0
10 TraesCS5A01G513300 chr4B 85.833 120 14 3 3442 3559 637978259 637978141 1.340000e-24 124.0
11 TraesCS5A01G513300 chr1B 95.473 243 11 0 1000 1242 286975801 286975559 4.310000e-104 388.0
12 TraesCS5A01G513300 chr1B 84.674 261 40 0 2299 2559 286974525 286974265 9.800000e-66 261.0
13 TraesCS5A01G513300 chr1B 95.918 49 2 0 3024 3072 662158816 662158864 2.950000e-11 80.5
14 TraesCS5A01G513300 chr1B 95.918 49 2 0 3024 3072 662161369 662161417 2.950000e-11 80.5
15 TraesCS5A01G513300 chr1B 92.857 42 1 2 3101 3141 595754899 595754859 3.840000e-05 60.2
16 TraesCS5A01G513300 chr1D 95.062 243 12 0 1000 1242 200439595 200439837 2.000000e-102 383.0
17 TraesCS5A01G513300 chr1D 84.733 262 38 2 2299 2559 200440838 200441098 9.800000e-66 261.0
18 TraesCS5A01G513300 chr1D 79.186 221 33 10 467 677 194821238 194821021 1.330000e-29 141.0
19 TraesCS5A01G513300 chr1A 93.750 256 14 2 987 1242 253720499 253720752 2.000000e-102 383.0
20 TraesCS5A01G513300 chr1A 84.733 262 38 2 2299 2559 253721638 253721898 9.800000e-66 261.0
21 TraesCS5A01G513300 chr1A 96.000 50 2 0 3023 3072 527694893 527694942 8.190000e-12 82.4
22 TraesCS5A01G513300 chr7A 80.889 225 33 7 463 678 168333320 168333097 6.110000e-38 169.0
23 TraesCS5A01G513300 chr7A 89.189 74 6 2 2998 3071 4898795 4898724 1.360000e-14 91.6
24 TraesCS5A01G513300 chr7A 94.737 38 1 1 3100 3136 736506929 736506966 1.380000e-04 58.4
25 TraesCS5A01G513300 chr3A 79.186 221 35 8 467 677 576609067 576608848 3.700000e-30 143.0
26 TraesCS5A01G513300 chr3A 95.918 49 2 0 3023 3071 161458326 161458278 2.950000e-11 80.5
27 TraesCS5A01G513300 chr3A 95.918 49 2 0 3023 3071 303756840 303756792 2.950000e-11 80.5
28 TraesCS5A01G513300 chr4A 78.125 224 39 9 467 680 102829025 102828802 2.230000e-27 134.0
29 TraesCS5A01G513300 chr4A 96.000 50 2 0 3023 3072 82849234 82849185 8.190000e-12 82.4
30 TraesCS5A01G513300 chr6A 77.679 224 41 7 463 678 54489006 54489228 1.040000e-25 128.0
31 TraesCS5A01G513300 chr5B 77.155 232 45 6 461 684 466559124 466559355 1.040000e-25 128.0
32 TraesCS5A01G513300 chr5D 94.340 53 3 0 3159 3211 387989006 387989058 8.190000e-12 82.4
33 TraesCS5A01G513300 chr3B 94.340 53 2 1 30 81 44292422 44292370 2.950000e-11 80.5
34 TraesCS5A01G513300 chr2A 92.593 54 3 1 3018 3071 31043351 31043403 3.810000e-10 76.8
35 TraesCS5A01G513300 chr6B 88.525 61 5 2 3023 3081 38772908 38772968 4.930000e-09 73.1
36 TraesCS5A01G513300 chr6B 93.182 44 2 1 3096 3138 623085325 623085368 2.970000e-06 63.9
37 TraesCS5A01G513300 chr7B 90.566 53 5 0 3159 3211 226579600 226579652 1.770000e-08 71.3
38 TraesCS5A01G513300 chr7B 94.595 37 1 1 3101 3136 746626679 746626643 4.960000e-04 56.5
39 TraesCS5A01G513300 chr7D 95.000 40 1 1 3098 3136 20298036 20298075 1.070000e-05 62.1
40 TraesCS5A01G513300 chr2B 88.235 51 5 1 30 79 17063155 17063205 3.840000e-05 60.2
41 TraesCS5A01G513300 chr3D 86.207 58 3 3 3159 3211 359733546 359733489 1.380000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G513300 chr5A 677129169 677132727 3558 True 6573.000000 6573 100.000000 1 3559 1 chr5A.!!$R2 3558
1 TraesCS5A01G513300 chr4D 497173044 497176173 3129 True 1144.333333 1347 88.771667 25 2972 3 chr4D.!!$R1 2947
2 TraesCS5A01G513300 chr4B 637978141 637983366 5225 True 800.750000 1256 87.698250 167 3559 4 chr4B.!!$R2 3392
3 TraesCS5A01G513300 chr4B 637742810 637743311 501 True 568.000000 568 87.377000 2487 2982 1 chr4B.!!$R1 495
4 TraesCS5A01G513300 chr1B 286974265 286975801 1536 True 324.500000 388 90.073500 1000 2559 2 chr1B.!!$R2 1559
5 TraesCS5A01G513300 chr1D 200439595 200441098 1503 False 322.000000 383 89.897500 1000 2559 2 chr1D.!!$F1 1559
6 TraesCS5A01G513300 chr1A 253720499 253721898 1399 False 322.000000 383 89.241500 987 2559 2 chr1A.!!$F2 1572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 432 1.617357 GTGGTTGTCTCGAGGTAGGTT 59.383 52.381 13.56 0.0 0.0 3.50 F
1260 2762 0.630478 AATTCCCCAGCCCCATACCT 60.630 55.000 0.00 0.0 0.0 3.08 F
1374 2895 0.462759 GTGGCCGGAGATTCTGAAGG 60.463 60.000 5.05 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1357 2878 0.179070 GACCTTCAGAATCTCCGGCC 60.179 60.0 0.0 0.0 0.0 6.13 R
2390 4722 0.937304 TCAGCTTGTCGTTGTTGAGC 59.063 50.0 0.0 0.0 0.0 4.26 R
3288 5730 0.033504 ACAGGTGGTTGTGTCTAGCG 59.966 55.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 9.582648 AGATAAGTGTGTACAAACCCTAAAAAT 57.417 29.630 12.75 0.00 0.00 1.82
130 133 7.174946 AGACAATTCCAACGTGAATAAAGTCAT 59.825 33.333 19.32 9.98 35.65 3.06
131 134 7.083858 ACAATTCCAACGTGAATAAAGTCATG 58.916 34.615 1.92 0.00 39.90 3.07
146 149 9.944376 AATAAAGTCATGAGTAGACAAAAGCTA 57.056 29.630 2.79 0.00 38.46 3.32
150 153 8.089115 AGTCATGAGTAGACAAAAGCTAAAAC 57.911 34.615 0.00 0.00 38.46 2.43
153 156 4.212636 TGAGTAGACAAAAGCTAAAACGGC 59.787 41.667 0.00 0.00 0.00 5.68
157 160 4.131596 AGACAAAAGCTAAAACGGCACTA 58.868 39.130 0.00 0.00 0.00 2.74
207 210 6.349300 ACCGATGTGTATTTCTAGCTTGAAT 58.651 36.000 11.41 5.07 0.00 2.57
224 227 7.460910 AGCTTGAATTTGGAAAATTTATGGGT 58.539 30.769 0.00 0.00 0.00 4.51
263 266 6.076981 AGTGAACATCCACAATTGTTTCTC 57.923 37.500 8.77 10.50 39.42 2.87
264 267 5.593909 AGTGAACATCCACAATTGTTTCTCA 59.406 36.000 8.77 3.70 39.42 3.27
277 281 9.160496 ACAATTGTTTCTCAAACTTTTTATGCA 57.840 25.926 4.92 0.00 41.90 3.96
310 314 2.107950 TTTCTAACATCTGGGCACGG 57.892 50.000 0.00 0.00 0.00 4.94
359 363 4.475016 AGTATTCTCCCTTGCTGTTATGGT 59.525 41.667 0.00 0.00 0.00 3.55
410 417 3.524095 TTGGAGGTGATTCATGTGGTT 57.476 42.857 0.00 0.00 0.00 3.67
425 432 1.617357 GTGGTTGTCTCGAGGTAGGTT 59.383 52.381 13.56 0.00 0.00 3.50
442 449 5.009610 GGTAGGTTGTTCATTTGTCACATGT 59.990 40.000 0.00 0.00 0.00 3.21
455 462 3.743911 TGTCACATGTCGCTAAAATTCGT 59.256 39.130 0.00 0.00 0.00 3.85
521 528 2.667470 TGAGAATCGAACCTCCCCTAG 58.333 52.381 12.88 0.00 38.61 3.02
523 530 2.624364 GAGAATCGAACCTCCCCTAGAC 59.376 54.545 6.24 0.00 0.00 2.59
649 657 2.677914 TGCCCGATTCTCAGGATTCTA 58.322 47.619 0.00 0.00 0.00 2.10
688 696 7.476540 AAAAACTGGACCTAAGTGTCTTTTT 57.523 32.000 0.00 0.00 35.54 1.94
754 763 6.884836 AGGGAAGGTTATGTCTTTGTTGTATC 59.115 38.462 0.00 0.00 0.00 2.24
807 2295 4.572389 ACTCAAAGTGTTACAACTCTGCAG 59.428 41.667 7.63 7.63 33.46 4.41
835 2325 1.679977 CCCATGACAGGCCCAACAG 60.680 63.158 0.00 0.00 0.00 3.16
858 2349 2.103537 TAACGAAAACCTAGCCCAGC 57.896 50.000 0.00 0.00 0.00 4.85
874 2365 3.344215 GCATCGCATCCGGCAGAG 61.344 66.667 0.00 0.00 45.17 3.35
993 2487 2.188817 GGTAGAGAAGGCAAGGAGGAA 58.811 52.381 0.00 0.00 0.00 3.36
1116 2618 1.141881 CTACAAGGTCGGCGAGCAT 59.858 57.895 36.27 25.31 31.89 3.79
1243 2745 5.986135 GTCGAGATCAACAAGCAGGTATAAT 59.014 40.000 0.00 0.00 0.00 1.28
1249 2751 4.017958 TCAACAAGCAGGTATAATTCCCCA 60.018 41.667 0.00 0.00 0.00 4.96
1255 2757 1.154430 GGTATAATTCCCCAGCCCCA 58.846 55.000 0.00 0.00 0.00 4.96
1257 2759 2.923629 GGTATAATTCCCCAGCCCCATA 59.076 50.000 0.00 0.00 0.00 2.74
1260 2762 0.630478 AATTCCCCAGCCCCATACCT 60.630 55.000 0.00 0.00 0.00 3.08
1261 2763 0.630478 ATTCCCCAGCCCCATACCTT 60.630 55.000 0.00 0.00 0.00 3.50
1262 2764 1.286305 TTCCCCAGCCCCATACCTTC 61.286 60.000 0.00 0.00 0.00 3.46
1285 2792 3.069586 TCTGTTCTTCATCTGTGGTCGTT 59.930 43.478 0.00 0.00 0.00 3.85
1340 2861 1.888018 GATCTTGACCGACGGGACA 59.112 57.895 20.00 14.91 36.18 4.02
1357 2878 2.993899 GGACACGTAAATCTGGTCTGTG 59.006 50.000 0.00 0.00 0.00 3.66
1374 2895 0.462759 GTGGCCGGAGATTCTGAAGG 60.463 60.000 5.05 0.00 0.00 3.46
1452 3000 6.642131 GCTTTTCTGTGCTTGATTTGTTATGA 59.358 34.615 0.00 0.00 0.00 2.15
1456 3004 8.791327 TTCTGTGCTTGATTTGTTATGATAGA 57.209 30.769 0.00 0.00 0.00 1.98
1477 3025 1.741528 TGCTATGTGTGCCTGTGATG 58.258 50.000 0.00 0.00 0.00 3.07
1489 3044 3.262660 TGCCTGTGATGAACTCTTCAGAT 59.737 43.478 0.00 0.00 43.98 2.90
1492 3047 5.672503 CCTGTGATGAACTCTTCAGATCAT 58.327 41.667 0.00 0.00 43.12 2.45
1509 3064 9.671279 TTCAGATCATGTTCATATGTTGTTACT 57.329 29.630 1.90 0.00 0.00 2.24
1539 3094 6.715347 AATTGTCTTGCTTACTTTTCCTGT 57.285 33.333 0.00 0.00 0.00 4.00
1596 3151 5.670792 AATGTCCTGCAATGATTTGATGT 57.329 34.783 0.00 0.00 34.60 3.06
1631 3186 4.784177 TGCTGCATCTTGAGAATGGATTA 58.216 39.130 0.00 0.00 0.00 1.75
1652 3237 9.774742 GGATTAGATTGAACTGTTTGATTACAC 57.225 33.333 0.00 0.00 0.00 2.90
1751 3336 2.708216 TCGTGTGATGGGCATACATT 57.292 45.000 0.00 0.00 38.40 2.71
1805 3391 5.175859 TGCTTTACCTGTAGCAGTTATGAC 58.824 41.667 0.00 0.00 42.12 3.06
1891 4134 6.154192 TGTTTCATGTAATGTTGCATATGGGT 59.846 34.615 4.56 0.00 46.80 4.51
1990 4311 3.118884 AGTTTGGATGCATTTCATGGCTC 60.119 43.478 0.00 0.00 35.05 4.70
2004 4325 3.881089 TCATGGCTCATCTTTGTATGCTG 59.119 43.478 0.00 0.00 0.00 4.41
2011 4332 6.654161 GGCTCATCTTTGTATGCTGATAAGAT 59.346 38.462 0.00 0.00 36.32 2.40
2012 4333 7.174599 GGCTCATCTTTGTATGCTGATAAGATT 59.825 37.037 0.00 0.00 34.31 2.40
2022 4343 8.387354 TGTATGCTGATAAGATTTTTGTACACG 58.613 33.333 0.00 0.00 0.00 4.49
2033 4354 9.887406 AAGATTTTTGTACACGGTAAATGTTAG 57.113 29.630 0.00 0.00 0.00 2.34
2034 4355 8.019094 AGATTTTTGTACACGGTAAATGTTAGC 58.981 33.333 0.00 0.00 0.00 3.09
2035 4356 6.864360 TTTTGTACACGGTAAATGTTAGCT 57.136 33.333 0.00 0.00 0.00 3.32
2036 4357 6.470557 TTTGTACACGGTAAATGTTAGCTC 57.529 37.500 0.00 0.00 0.00 4.09
2037 4358 5.395682 TGTACACGGTAAATGTTAGCTCT 57.604 39.130 0.00 0.00 0.00 4.09
2038 4359 5.404946 TGTACACGGTAAATGTTAGCTCTC 58.595 41.667 0.00 0.00 0.00 3.20
2039 4360 4.803098 ACACGGTAAATGTTAGCTCTCT 57.197 40.909 0.00 0.00 0.00 3.10
2040 4361 5.909621 ACACGGTAAATGTTAGCTCTCTA 57.090 39.130 0.00 0.00 0.00 2.43
2041 4362 6.276832 ACACGGTAAATGTTAGCTCTCTAA 57.723 37.500 0.00 0.00 32.66 2.10
2042 4363 6.875076 ACACGGTAAATGTTAGCTCTCTAAT 58.125 36.000 0.00 0.00 37.16 1.73
2043 4364 6.757010 ACACGGTAAATGTTAGCTCTCTAATG 59.243 38.462 0.00 0.00 37.16 1.90
2044 4365 6.201044 CACGGTAAATGTTAGCTCTCTAATGG 59.799 42.308 0.00 0.00 37.16 3.16
2045 4366 6.127140 ACGGTAAATGTTAGCTCTCTAATGGT 60.127 38.462 0.00 0.00 37.16 3.55
2046 4367 6.761714 CGGTAAATGTTAGCTCTCTAATGGTT 59.238 38.462 0.00 0.00 37.16 3.67
2047 4368 7.042658 CGGTAAATGTTAGCTCTCTAATGGTTC 60.043 40.741 0.00 0.00 37.16 3.62
2048 4369 7.988028 GGTAAATGTTAGCTCTCTAATGGTTCT 59.012 37.037 0.00 0.00 37.16 3.01
2049 4370 9.036671 GTAAATGTTAGCTCTCTAATGGTTCTC 57.963 37.037 0.00 0.00 37.16 2.87
2050 4371 5.250235 TGTTAGCTCTCTAATGGTTCTCG 57.750 43.478 0.00 0.00 37.16 4.04
2051 4372 4.705507 TGTTAGCTCTCTAATGGTTCTCGT 59.294 41.667 0.00 0.00 37.16 4.18
2052 4373 5.185249 TGTTAGCTCTCTAATGGTTCTCGTT 59.815 40.000 0.00 0.00 37.16 3.85
2053 4374 4.116747 AGCTCTCTAATGGTTCTCGTTG 57.883 45.455 0.00 0.00 0.00 4.10
2054 4375 3.118956 AGCTCTCTAATGGTTCTCGTTGG 60.119 47.826 0.00 0.00 0.00 3.77
2055 4376 3.368531 GCTCTCTAATGGTTCTCGTTGGT 60.369 47.826 0.00 0.00 0.00 3.67
2056 4377 4.142227 GCTCTCTAATGGTTCTCGTTGGTA 60.142 45.833 0.00 0.00 0.00 3.25
2057 4378 5.578005 TCTCTAATGGTTCTCGTTGGTAG 57.422 43.478 0.00 0.00 0.00 3.18
2058 4379 5.014858 TCTCTAATGGTTCTCGTTGGTAGT 58.985 41.667 0.00 0.00 0.00 2.73
2059 4380 6.182627 TCTCTAATGGTTCTCGTTGGTAGTA 58.817 40.000 0.00 0.00 0.00 1.82
2060 4381 6.318144 TCTCTAATGGTTCTCGTTGGTAGTAG 59.682 42.308 0.00 0.00 0.00 2.57
2061 4382 5.948162 TCTAATGGTTCTCGTTGGTAGTAGT 59.052 40.000 0.00 0.00 0.00 2.73
2062 4383 5.479124 AATGGTTCTCGTTGGTAGTAGTT 57.521 39.130 0.00 0.00 0.00 2.24
2063 4384 4.247267 TGGTTCTCGTTGGTAGTAGTTG 57.753 45.455 0.00 0.00 0.00 3.16
2064 4385 3.638160 TGGTTCTCGTTGGTAGTAGTTGT 59.362 43.478 0.00 0.00 0.00 3.32
2065 4386 4.099881 TGGTTCTCGTTGGTAGTAGTTGTT 59.900 41.667 0.00 0.00 0.00 2.83
2066 4387 5.052481 GGTTCTCGTTGGTAGTAGTTGTTT 58.948 41.667 0.00 0.00 0.00 2.83
2067 4388 5.050567 GGTTCTCGTTGGTAGTAGTTGTTTG 60.051 44.000 0.00 0.00 0.00 2.93
2068 4389 5.266733 TCTCGTTGGTAGTAGTTGTTTGT 57.733 39.130 0.00 0.00 0.00 2.83
2069 4390 5.663456 TCTCGTTGGTAGTAGTTGTTTGTT 58.337 37.500 0.00 0.00 0.00 2.83
2099 4428 7.026815 CCATTTGGATTGGTAGACCACAGTAA 61.027 42.308 0.00 0.00 41.29 2.24
2159 4488 4.572985 TTTCTGCATTTCCTTGTCTGTG 57.427 40.909 0.00 0.00 0.00 3.66
2169 4498 6.677781 TTTCCTTGTCTGTGAACTACTTTG 57.322 37.500 0.00 0.00 0.00 2.77
2173 4502 5.354234 CCTTGTCTGTGAACTACTTTGTGTT 59.646 40.000 0.00 0.00 0.00 3.32
2176 4505 9.256477 CTTGTCTGTGAACTACTTTGTGTTATA 57.744 33.333 0.00 0.00 0.00 0.98
2177 4506 8.583810 TGTCTGTGAACTACTTTGTGTTATAC 57.416 34.615 0.00 0.00 0.00 1.47
2204 4536 7.083858 TCTAAATTAGTGTTTGCTTGTCATGC 58.916 34.615 3.79 3.79 0.00 4.06
2208 4540 2.431782 AGTGTTTGCTTGTCATGCCTTT 59.568 40.909 8.14 0.00 0.00 3.11
2210 4542 4.099266 AGTGTTTGCTTGTCATGCCTTTTA 59.901 37.500 8.14 0.00 0.00 1.52
2218 4550 6.155827 GCTTGTCATGCCTTTTACATGTAAA 58.844 36.000 23.91 23.91 44.26 2.01
2225 4557 5.233988 TGCCTTTTACATGTAAATGTTGCC 58.766 37.500 27.14 17.27 35.27 4.52
2229 4561 6.412362 TTTTACATGTAAATGTTGCCCTGT 57.588 33.333 27.14 0.00 35.27 4.00
2261 4593 8.982685 GTATCAGTGGTTTCATATATGTCTGTG 58.017 37.037 12.42 3.51 0.00 3.66
2262 4594 5.817296 TCAGTGGTTTCATATATGTCTGTGC 59.183 40.000 12.42 1.77 0.00 4.57
2263 4595 5.819379 CAGTGGTTTCATATATGTCTGTGCT 59.181 40.000 12.42 3.81 0.00 4.40
2264 4596 6.018425 CAGTGGTTTCATATATGTCTGTGCTC 60.018 42.308 12.42 0.00 0.00 4.26
2265 4597 6.051717 GTGGTTTCATATATGTCTGTGCTCT 58.948 40.000 12.42 0.00 0.00 4.09
2266 4598 6.018425 GTGGTTTCATATATGTCTGTGCTCTG 60.018 42.308 12.42 0.00 0.00 3.35
2267 4599 6.051717 GGTTTCATATATGTCTGTGCTCTGT 58.948 40.000 12.42 0.00 0.00 3.41
2566 4899 1.641577 GGTGGTTACTAGAGCGCTTG 58.358 55.000 13.26 7.99 0.00 4.01
2567 4900 1.067071 GGTGGTTACTAGAGCGCTTGT 60.067 52.381 13.26 13.91 34.51 3.16
2568 4901 2.612221 GGTGGTTACTAGAGCGCTTGTT 60.612 50.000 13.26 2.94 32.42 2.83
2759 5101 3.399440 TTGGTTGATTGGGCAATTGTC 57.601 42.857 7.40 3.95 0.00 3.18
2763 5105 3.578688 GTTGATTGGGCAATTGTCTGTC 58.421 45.455 10.38 6.48 0.00 3.51
2777 5119 2.818432 TGTCTGTCCTACGAGTTCCTTC 59.182 50.000 0.00 0.00 0.00 3.46
2799 5141 1.396301 GAGAAGCTGCAGATTTCACGG 59.604 52.381 19.75 0.00 0.00 4.94
2802 5144 2.334946 GCTGCAGATTTCACGGGCA 61.335 57.895 20.43 0.00 0.00 5.36
2870 5213 7.720074 AGATGCATGTCAAGATCTATGTGAAAT 59.280 33.333 2.46 0.00 0.00 2.17
2883 5226 7.488187 TCTATGTGAAATGATAGCTTTGCTC 57.512 36.000 0.00 0.00 40.44 4.26
2887 5230 7.870509 TGTGAAATGATAGCTTTGCTCTAAT 57.129 32.000 0.00 0.00 40.44 1.73
2888 5231 8.284945 TGTGAAATGATAGCTTTGCTCTAATT 57.715 30.769 0.00 0.00 40.44 1.40
2889 5232 9.394767 TGTGAAATGATAGCTTTGCTCTAATTA 57.605 29.630 0.00 0.00 40.44 1.40
2931 5278 7.615365 TCATAAGCTGATAAAATGGTTGGAACT 59.385 33.333 0.00 0.00 0.00 3.01
2932 5279 6.670695 AAGCTGATAAAATGGTTGGAACTT 57.329 33.333 0.00 0.00 0.00 2.66
2952 5299 4.646492 ACTTGTGCTCAAAATTCTCAACCT 59.354 37.500 2.44 0.00 32.87 3.50
3008 5417 8.919145 GCATATAGCAGATAAATACTACTCCCT 58.081 37.037 0.00 0.00 44.79 4.20
3011 5420 6.909550 AGCAGATAAATACTACTCCCTCTG 57.090 41.667 0.00 0.00 33.67 3.35
3012 5421 6.377912 AGCAGATAAATACTACTCCCTCTGT 58.622 40.000 0.00 0.00 33.21 3.41
3013 5422 7.527796 AGCAGATAAATACTACTCCCTCTGTA 58.472 38.462 0.00 0.00 33.21 2.74
3014 5423 8.005388 AGCAGATAAATACTACTCCCTCTGTAA 58.995 37.037 0.00 0.00 33.21 2.41
3015 5424 8.301002 GCAGATAAATACTACTCCCTCTGTAAG 58.699 40.741 0.00 0.00 33.21 2.34
3016 5425 8.301002 CAGATAAATACTACTCCCTCTGTAAGC 58.699 40.741 0.00 0.00 0.00 3.09
3017 5426 8.005388 AGATAAATACTACTCCCTCTGTAAGCA 58.995 37.037 0.00 0.00 0.00 3.91
3018 5427 6.869206 AAATACTACTCCCTCTGTAAGCAA 57.131 37.500 0.00 0.00 0.00 3.91
3019 5428 6.869206 AATACTACTCCCTCTGTAAGCAAA 57.131 37.500 0.00 0.00 0.00 3.68
3020 5429 7.439108 AATACTACTCCCTCTGTAAGCAAAT 57.561 36.000 0.00 0.00 0.00 2.32
3021 5430 5.091261 ACTACTCCCTCTGTAAGCAAATG 57.909 43.478 0.00 0.00 0.00 2.32
3022 5431 2.716217 ACTCCCTCTGTAAGCAAATGC 58.284 47.619 0.00 0.00 42.49 3.56
3023 5432 2.040278 ACTCCCTCTGTAAGCAAATGCA 59.960 45.455 8.28 0.00 45.16 3.96
3024 5433 2.421424 CTCCCTCTGTAAGCAAATGCAC 59.579 50.000 8.28 0.00 45.16 4.57
3025 5434 2.040278 TCCCTCTGTAAGCAAATGCACT 59.960 45.455 8.28 0.00 45.16 4.40
3026 5435 3.263170 TCCCTCTGTAAGCAAATGCACTA 59.737 43.478 8.28 0.00 45.16 2.74
3027 5436 3.375299 CCCTCTGTAAGCAAATGCACTAC 59.625 47.826 8.28 9.01 45.16 2.73
3028 5437 4.256920 CCTCTGTAAGCAAATGCACTACT 58.743 43.478 8.28 0.00 45.16 2.57
3029 5438 4.697352 CCTCTGTAAGCAAATGCACTACTT 59.303 41.667 8.28 0.00 45.16 2.24
3030 5439 5.163814 CCTCTGTAAGCAAATGCACTACTTC 60.164 44.000 8.28 0.00 45.16 3.01
3031 5440 5.304778 TCTGTAAGCAAATGCACTACTTCA 58.695 37.500 8.28 0.00 45.16 3.02
3032 5441 5.762711 TCTGTAAGCAAATGCACTACTTCAA 59.237 36.000 8.28 0.00 45.16 2.69
3033 5442 6.430925 TCTGTAAGCAAATGCACTACTTCAAT 59.569 34.615 8.28 0.00 45.16 2.57
3034 5443 6.380995 TGTAAGCAAATGCACTACTTCAATG 58.619 36.000 8.28 0.00 45.16 2.82
3035 5444 5.710513 AAGCAAATGCACTACTTCAATGA 57.289 34.783 8.28 0.00 45.16 2.57
3036 5445 5.909621 AGCAAATGCACTACTTCAATGAT 57.090 34.783 8.28 0.00 45.16 2.45
3037 5446 5.888105 AGCAAATGCACTACTTCAATGATC 58.112 37.500 8.28 0.00 45.16 2.92
3038 5447 5.651139 AGCAAATGCACTACTTCAATGATCT 59.349 36.000 8.28 0.00 45.16 2.75
3039 5448 6.825213 AGCAAATGCACTACTTCAATGATCTA 59.175 34.615 8.28 0.00 45.16 1.98
3040 5449 7.337689 AGCAAATGCACTACTTCAATGATCTAA 59.662 33.333 8.28 0.00 45.16 2.10
3041 5450 7.970061 GCAAATGCACTACTTCAATGATCTAAA 59.030 33.333 0.00 0.00 41.59 1.85
3042 5451 9.282247 CAAATGCACTACTTCAATGATCTAAAC 57.718 33.333 0.00 0.00 0.00 2.01
3043 5452 6.647212 TGCACTACTTCAATGATCTAAACG 57.353 37.500 0.00 0.00 0.00 3.60
3044 5453 5.063438 TGCACTACTTCAATGATCTAAACGC 59.937 40.000 0.00 0.00 0.00 4.84
3045 5454 5.292101 GCACTACTTCAATGATCTAAACGCT 59.708 40.000 0.00 0.00 0.00 5.07
3046 5455 6.508721 GCACTACTTCAATGATCTAAACGCTC 60.509 42.308 0.00 0.00 0.00 5.03
3047 5456 6.754209 CACTACTTCAATGATCTAAACGCTCT 59.246 38.462 0.00 0.00 0.00 4.09
3048 5457 7.276658 CACTACTTCAATGATCTAAACGCTCTT 59.723 37.037 0.00 0.00 0.00 2.85
3049 5458 8.467598 ACTACTTCAATGATCTAAACGCTCTTA 58.532 33.333 0.00 0.00 0.00 2.10
3050 5459 9.469807 CTACTTCAATGATCTAAACGCTCTTAT 57.530 33.333 0.00 0.00 0.00 1.73
3052 5461 9.817809 ACTTCAATGATCTAAACGCTCTTATAA 57.182 29.630 0.00 0.00 0.00 0.98
3065 5474 7.829378 ACGCTCTTATAAAAGTTTACAGAGG 57.171 36.000 16.49 11.85 35.69 3.69
3066 5475 6.817140 ACGCTCTTATAAAAGTTTACAGAGGG 59.183 38.462 22.31 22.31 43.34 4.30
3067 5476 7.039882 CGCTCTTATAAAAGTTTACAGAGGGA 58.960 38.462 20.93 3.69 42.11 4.20
3068 5477 7.222999 CGCTCTTATAAAAGTTTACAGAGGGAG 59.777 40.741 20.93 10.43 42.11 4.30
3069 5478 8.041919 GCTCTTATAAAAGTTTACAGAGGGAGT 58.958 37.037 16.49 0.00 35.69 3.85
3072 5481 9.819267 CTTATAAAAGTTTACAGAGGGAGTAGG 57.181 37.037 0.00 0.00 0.00 3.18
3073 5482 7.809880 ATAAAAGTTTACAGAGGGAGTAGGT 57.190 36.000 0.00 0.00 0.00 3.08
3101 5514 9.453325 TTTTCTTTGCCACGTAAATAAGTTTAG 57.547 29.630 0.00 0.00 30.76 1.85
3107 5520 6.813152 TGCCACGTAAATAAGTTTAGTACTCC 59.187 38.462 0.00 0.00 35.54 3.85
3110 5523 8.037166 CCACGTAAATAAGTTTAGTACTCCCTT 58.963 37.037 0.00 2.78 35.54 3.95
3111 5524 9.080915 CACGTAAATAAGTTTAGTACTCCCTTC 57.919 37.037 0.00 0.00 35.54 3.46
3115 5528 8.768957 AAATAAGTTTAGTACTCCCTTCGTTC 57.231 34.615 0.00 0.00 35.54 3.95
3116 5529 4.797800 AGTTTAGTACTCCCTTCGTTCC 57.202 45.455 0.00 0.00 28.23 3.62
3122 5535 4.981812 AGTACTCCCTTCGTTCCAAAATT 58.018 39.130 0.00 0.00 0.00 1.82
3128 5541 4.647399 TCCCTTCGTTCCAAAATTCTTGTT 59.353 37.500 0.00 0.00 0.00 2.83
3129 5542 5.128008 TCCCTTCGTTCCAAAATTCTTGTTT 59.872 36.000 0.00 0.00 0.00 2.83
3131 5544 6.981559 CCCTTCGTTCCAAAATTCTTGTTTTA 59.018 34.615 0.00 0.00 30.56 1.52
3132 5545 7.492994 CCCTTCGTTCCAAAATTCTTGTTTTAA 59.507 33.333 0.00 0.00 30.56 1.52
3133 5546 9.040939 CCTTCGTTCCAAAATTCTTGTTTTAAT 57.959 29.630 0.00 0.00 30.56 1.40
3249 5691 9.952188 GCATATAAGTAGAGCGATGATGTATAA 57.048 33.333 0.00 0.00 0.00 0.98
3252 5694 8.897457 ATAAGTAGAGCGATGATGTATAAACG 57.103 34.615 0.00 0.00 0.00 3.60
3253 5695 5.700846 AGTAGAGCGATGATGTATAAACGG 58.299 41.667 0.00 0.00 0.00 4.44
3254 5696 4.585955 AGAGCGATGATGTATAAACGGT 57.414 40.909 0.00 0.00 0.00 4.83
3255 5697 4.945246 AGAGCGATGATGTATAAACGGTT 58.055 39.130 0.00 0.00 0.00 4.44
3256 5698 5.357257 AGAGCGATGATGTATAAACGGTTT 58.643 37.500 11.33 11.33 0.00 3.27
3257 5699 5.815740 AGAGCGATGATGTATAAACGGTTTT 59.184 36.000 11.87 2.89 0.00 2.43
3258 5700 5.806286 AGCGATGATGTATAAACGGTTTTG 58.194 37.500 11.87 0.00 0.00 2.44
3262 5704 7.414436 CGATGATGTATAAACGGTTTTGGATT 58.586 34.615 11.87 0.00 0.00 3.01
3264 5706 6.857956 TGATGTATAAACGGTTTTGGATTGG 58.142 36.000 11.87 0.00 0.00 3.16
3265 5707 5.646577 TGTATAAACGGTTTTGGATTGGG 57.353 39.130 11.87 0.00 0.00 4.12
3266 5708 5.078256 TGTATAAACGGTTTTGGATTGGGT 58.922 37.500 11.87 0.00 0.00 4.51
3267 5709 6.243900 TGTATAAACGGTTTTGGATTGGGTA 58.756 36.000 11.87 0.00 0.00 3.69
3269 5711 2.963599 ACGGTTTTGGATTGGGTACT 57.036 45.000 0.00 0.00 0.00 2.73
3270 5712 3.232720 ACGGTTTTGGATTGGGTACTT 57.767 42.857 0.00 0.00 0.00 2.24
3271 5713 4.370094 ACGGTTTTGGATTGGGTACTTA 57.630 40.909 0.00 0.00 0.00 2.24
3272 5714 4.329392 ACGGTTTTGGATTGGGTACTTAG 58.671 43.478 0.00 0.00 0.00 2.18
3273 5715 3.128068 CGGTTTTGGATTGGGTACTTAGC 59.872 47.826 0.00 0.00 0.00 3.09
3274 5716 4.341487 GGTTTTGGATTGGGTACTTAGCT 58.659 43.478 0.00 0.00 0.00 3.32
3276 5718 3.926058 TTGGATTGGGTACTTAGCTCC 57.074 47.619 0.00 0.00 0.00 4.70
3278 5720 2.293586 TGGATTGGGTACTTAGCTCCCT 60.294 50.000 8.78 0.00 41.58 4.20
3280 5722 3.433740 GGATTGGGTACTTAGCTCCCTTG 60.434 52.174 8.78 0.00 41.58 3.61
3282 5724 2.627933 TGGGTACTTAGCTCCCTTGTT 58.372 47.619 8.78 0.00 41.58 2.83
3283 5725 2.570302 TGGGTACTTAGCTCCCTTGTTC 59.430 50.000 8.78 0.00 41.58 3.18
3284 5726 2.418334 GGGTACTTAGCTCCCTTGTTCG 60.418 54.545 0.00 0.00 38.29 3.95
3285 5727 2.418334 GGTACTTAGCTCCCTTGTTCGG 60.418 54.545 0.00 0.00 0.00 4.30
3286 5728 1.640917 ACTTAGCTCCCTTGTTCGGA 58.359 50.000 0.00 0.00 0.00 4.55
3287 5729 1.275573 ACTTAGCTCCCTTGTTCGGAC 59.724 52.381 0.00 0.00 0.00 4.79
3288 5730 0.611714 TTAGCTCCCTTGTTCGGACC 59.388 55.000 0.00 0.00 0.00 4.46
3290 5732 2.434359 CTCCCTTGTTCGGACCGC 60.434 66.667 9.66 0.00 0.00 5.68
3291 5733 2.920912 TCCCTTGTTCGGACCGCT 60.921 61.111 9.66 0.00 0.00 5.52
3292 5734 1.601419 CTCCCTTGTTCGGACCGCTA 61.601 60.000 9.66 0.00 0.00 4.26
3293 5735 1.153628 CCCTTGTTCGGACCGCTAG 60.154 63.158 9.66 2.48 0.00 3.42
3294 5736 1.601419 CCCTTGTTCGGACCGCTAGA 61.601 60.000 9.66 0.00 0.00 2.43
3296 5738 0.242825 CTTGTTCGGACCGCTAGACA 59.757 55.000 9.66 8.45 0.00 3.41
3298 5740 1.174078 TGTTCGGACCGCTAGACACA 61.174 55.000 9.66 2.09 0.00 3.72
3369 6067 2.526046 CCTCAACCGTTCCCCACCT 61.526 63.158 0.00 0.00 0.00 4.00
3370 6068 1.003718 CTCAACCGTTCCCCACCTC 60.004 63.158 0.00 0.00 0.00 3.85
3380 6078 3.016971 CCCACCTCCATGGAGCCA 61.017 66.667 32.97 3.21 43.02 4.75
3381 6079 2.389449 CCCACCTCCATGGAGCCAT 61.389 63.158 32.97 18.92 43.02 4.40
3382 6080 1.150081 CCACCTCCATGGAGCCATC 59.850 63.158 32.97 0.00 43.02 3.51
3383 6081 1.150081 CACCTCCATGGAGCCATCC 59.850 63.158 32.97 0.00 46.87 3.51
3385 6083 1.773391 CCTCCATGGAGCCATCCCT 60.773 63.158 32.97 0.00 46.04 4.20
3386 6084 1.454976 CTCCATGGAGCCATCCCTG 59.545 63.158 28.45 2.97 46.04 4.45
3387 6085 1.308128 TCCATGGAGCCATCCCTGT 60.308 57.895 11.44 0.00 46.04 4.00
3388 6086 0.030195 TCCATGGAGCCATCCCTGTA 60.030 55.000 11.44 0.00 46.04 2.74
3389 6087 0.846015 CCATGGAGCCATCCCTGTAA 59.154 55.000 5.56 0.00 46.04 2.41
3393 6141 0.919710 GGAGCCATCCCTGTAAACCT 59.080 55.000 0.00 0.00 40.03 3.50
3394 6142 1.134068 GGAGCCATCCCTGTAAACCTC 60.134 57.143 0.00 0.00 40.03 3.85
3399 6147 2.571653 CCATCCCTGTAAACCTCTCACA 59.428 50.000 0.00 0.00 0.00 3.58
3400 6148 3.200825 CCATCCCTGTAAACCTCTCACAT 59.799 47.826 0.00 0.00 0.00 3.21
3401 6149 4.324563 CCATCCCTGTAAACCTCTCACATT 60.325 45.833 0.00 0.00 0.00 2.71
3403 6151 5.319043 TCCCTGTAAACCTCTCACATTTT 57.681 39.130 0.00 0.00 0.00 1.82
3437 6262 5.049828 ACAAGACAAGGTTAAAATGCTTGC 58.950 37.500 0.00 0.00 34.51 4.01
3440 6265 3.727726 ACAAGGTTAAAATGCTTGCCAC 58.272 40.909 0.00 0.00 0.00 5.01
3445 6270 5.375773 AGGTTAAAATGCTTGCCACAAATT 58.624 33.333 0.00 0.00 0.00 1.82
3449 6274 5.361135 AAAATGCTTGCCACAAATTAAGC 57.639 34.783 0.00 0.00 44.26 3.09
3464 6322 5.622770 AATTAAGCGTACTTGTCTTTGGG 57.377 39.130 0.00 0.00 36.57 4.12
3466 6324 0.605589 AGCGTACTTGTCTTTGGGGC 60.606 55.000 0.00 0.00 0.00 5.80
3484 6342 0.961753 GCAAAGGAGTGAAACCCCAG 59.038 55.000 0.00 0.00 37.80 4.45
3487 6345 2.035783 GGAGTGAAACCCCAGCCC 59.964 66.667 0.00 0.00 37.80 5.19
3489 6347 1.002011 GAGTGAAACCCCAGCCCTC 60.002 63.158 0.00 0.00 37.80 4.30
3493 6353 3.330720 AAACCCCAGCCCTCGAGG 61.331 66.667 25.36 25.36 39.47 4.63
3497 6357 2.364317 CCCAGCCCTCGAGGAAGA 60.364 66.667 33.39 0.00 38.24 2.87
3501 6361 0.249238 CAGCCCTCGAGGAAGAATCG 60.249 60.000 33.39 14.91 41.50 3.34
3505 6365 1.688772 CCTCGAGGAAGAATCGGGTA 58.311 55.000 28.21 0.00 39.03 3.69
3513 6373 5.870978 CGAGGAAGAATCGGGTAAAACTTAA 59.129 40.000 0.00 0.00 36.54 1.85
3514 6374 6.035758 CGAGGAAGAATCGGGTAAAACTTAAG 59.964 42.308 0.00 0.00 36.54 1.85
3515 6375 5.646793 AGGAAGAATCGGGTAAAACTTAAGC 59.353 40.000 1.29 0.00 0.00 3.09
3516 6376 5.646793 GGAAGAATCGGGTAAAACTTAAGCT 59.353 40.000 1.29 0.00 0.00 3.74
3518 6378 7.335171 GGAAGAATCGGGTAAAACTTAAGCTAA 59.665 37.037 1.29 0.00 0.00 3.09
3519 6379 7.606858 AGAATCGGGTAAAACTTAAGCTAAC 57.393 36.000 1.29 0.00 0.00 2.34
3521 6381 7.548427 AGAATCGGGTAAAACTTAAGCTAACTC 59.452 37.037 1.29 0.00 0.00 3.01
3522 6382 6.350629 TCGGGTAAAACTTAAGCTAACTCT 57.649 37.500 1.29 0.00 0.00 3.24
3530 6390 6.830873 AACTTAAGCTAACTCTCCGTCTTA 57.169 37.500 1.29 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.470098 ACACTTATCTTGTGAACATCCACAC 59.530 40.000 0.00 0.00 45.62 3.82
101 104 8.194769 ACTTTATTCACGTTGGAATTGTCTTTT 58.805 29.630 6.45 0.00 38.41 2.27
113 116 7.328493 TGTCTACTCATGACTTTATTCACGTTG 59.672 37.037 0.00 0.00 35.63 4.10
130 133 4.212636 GCCGTTTTAGCTTTTGTCTACTCA 59.787 41.667 0.00 0.00 0.00 3.41
131 134 4.212636 TGCCGTTTTAGCTTTTGTCTACTC 59.787 41.667 0.00 0.00 0.00 2.59
146 149 7.870445 ACAAATTTGAATGTATAGTGCCGTTTT 59.130 29.630 24.64 0.00 0.00 2.43
150 153 6.785191 AGACAAATTTGAATGTATAGTGCCG 58.215 36.000 24.64 0.00 0.00 5.69
186 189 8.677300 TCCAAATTCAAGCTAGAAATACACATC 58.323 33.333 0.00 0.00 0.00 3.06
198 201 8.601546 ACCCATAAATTTTCCAAATTCAAGCTA 58.398 29.630 0.00 0.00 0.00 3.32
224 227 7.990886 GGATGTTCACTAGATGGGTGTTTATAA 59.009 37.037 0.00 0.00 36.25 0.98
240 243 5.593909 TGAGAAACAATTGTGGATGTTCACT 59.406 36.000 12.82 0.00 38.75 3.41
296 300 0.398696 TGTTACCGTGCCCAGATGTT 59.601 50.000 0.00 0.00 0.00 2.71
301 305 0.322322 TTAGGTGTTACCGTGCCCAG 59.678 55.000 0.00 0.00 44.90 4.45
302 306 0.322322 CTTAGGTGTTACCGTGCCCA 59.678 55.000 0.00 0.00 44.90 5.36
310 314 2.919228 CTCCCATGGCTTAGGTGTTAC 58.081 52.381 6.09 0.00 0.00 2.50
359 363 2.890766 GCCCGGTGTTTCCTCCTCA 61.891 63.158 0.00 0.00 0.00 3.86
410 417 2.589720 TGAACAACCTACCTCGAGACA 58.410 47.619 15.71 0.00 0.00 3.41
425 432 2.877786 AGCGACATGTGACAAATGAACA 59.122 40.909 12.75 0.00 0.00 3.18
442 449 4.312443 AGTCTCCAAACGAATTTTAGCGA 58.688 39.130 0.00 0.00 0.00 4.93
455 462 1.742308 ACTGGGCCTTAGTCTCCAAA 58.258 50.000 4.53 0.00 0.00 3.28
720 728 8.721133 AAGACATAACCTTCCCTAACAAAAAT 57.279 30.769 0.00 0.00 0.00 1.82
754 763 4.475527 GCCGGTTATTGGGCTAGG 57.524 61.111 1.90 0.00 45.93 3.02
807 2295 3.263941 GTCATGGGTTGCCGTGAC 58.736 61.111 0.00 0.00 45.40 3.67
835 2325 4.438336 GCTGGGCTAGGTTTTCGTTATTTC 60.438 45.833 0.00 0.00 0.00 2.17
858 2349 3.344215 GCTCTGCCGGATGCGATG 61.344 66.667 8.71 0.00 45.60 3.84
874 2365 2.676163 ATAAATGGGTCTCGGGCCGC 62.676 60.000 23.83 7.37 0.00 6.53
975 2469 2.472029 CCTTCCTCCTTGCCTTCTCTA 58.528 52.381 0.00 0.00 0.00 2.43
1116 2618 0.593008 CGTTCACCTTGACGTCGACA 60.593 55.000 17.16 0.00 0.00 4.35
1243 2745 1.230482 AAGGTATGGGGCTGGGGAA 60.230 57.895 0.00 0.00 0.00 3.97
1249 2751 1.840635 GAACAGAGAAGGTATGGGGCT 59.159 52.381 0.00 0.00 0.00 5.19
1255 2757 6.351711 CCACAGATGAAGAACAGAGAAGGTAT 60.352 42.308 0.00 0.00 0.00 2.73
1257 2759 4.262808 CCACAGATGAAGAACAGAGAAGGT 60.263 45.833 0.00 0.00 0.00 3.50
1260 2762 4.559502 CGACCACAGATGAAGAACAGAGAA 60.560 45.833 0.00 0.00 0.00 2.87
1261 2763 3.057245 CGACCACAGATGAAGAACAGAGA 60.057 47.826 0.00 0.00 0.00 3.10
1262 2764 3.249091 CGACCACAGATGAAGAACAGAG 58.751 50.000 0.00 0.00 0.00 3.35
1285 2792 3.559171 GGAGCACAGATCTAACAAACCCA 60.559 47.826 0.00 0.00 0.00 4.51
1340 2861 1.338769 GGCCACAGACCAGATTTACGT 60.339 52.381 0.00 0.00 0.00 3.57
1351 2872 0.460987 CAGAATCTCCGGCCACAGAC 60.461 60.000 2.24 0.00 0.00 3.51
1357 2878 0.179070 GACCTTCAGAATCTCCGGCC 60.179 60.000 0.00 0.00 0.00 6.13
1428 2976 8.752766 ATCATAACAAATCAAGCACAGAAAAG 57.247 30.769 0.00 0.00 0.00 2.27
1432 2980 8.969260 ATCTATCATAACAAATCAAGCACAGA 57.031 30.769 0.00 0.00 0.00 3.41
1452 3000 4.132336 CACAGGCACACATAGCAATCTAT 58.868 43.478 0.00 0.00 35.97 1.98
1456 3004 2.495155 TCACAGGCACACATAGCAAT 57.505 45.000 0.00 0.00 0.00 3.56
1477 3025 8.659925 ACATATGAACATGATCTGAAGAGTTC 57.340 34.615 10.38 0.00 36.73 3.01
1515 3070 7.112452 ACAGGAAAAGTAAGCAAGACAATTT 57.888 32.000 0.00 0.00 0.00 1.82
1516 3071 6.715347 ACAGGAAAAGTAAGCAAGACAATT 57.285 33.333 0.00 0.00 0.00 2.32
1535 3090 3.196463 TGCAAGCAAATTGACAAACAGG 58.804 40.909 0.00 0.00 41.83 4.00
1585 3140 8.355169 GCATAACATAACAGGACATCAAATCAT 58.645 33.333 0.00 0.00 0.00 2.45
1596 3151 5.039920 AGATGCAGCATAACATAACAGGA 57.960 39.130 8.22 0.00 0.00 3.86
1631 3186 7.086376 GCATGTGTAATCAAACAGTTCAATCT 58.914 34.615 0.00 0.00 0.00 2.40
1751 3336 6.947733 TCAGAGGAAGCCAGAATGAAATTTTA 59.052 34.615 0.00 0.00 39.69 1.52
1805 3391 9.671279 TTATATGTGTATCATCCAATTAGGCTG 57.329 33.333 0.00 0.00 37.91 4.85
1843 3429 6.828785 ACAAGCCAAGGTATCCACTAAATAAG 59.171 38.462 0.00 0.00 0.00 1.73
1891 4134 2.171659 TGAAACGGGCTAGGATATGCAA 59.828 45.455 0.00 0.00 0.00 4.08
1900 4143 4.442706 ACACATTAGATGAAACGGGCTAG 58.557 43.478 0.00 0.00 0.00 3.42
2011 4332 7.227116 AGAGCTAACATTTACCGTGTACAAAAA 59.773 33.333 0.00 0.00 0.00 1.94
2012 4333 6.707161 AGAGCTAACATTTACCGTGTACAAAA 59.293 34.615 0.00 0.00 0.00 2.44
2022 4343 7.988028 AGAACCATTAGAGAGCTAACATTTACC 59.012 37.037 0.00 0.00 39.29 2.85
2032 4353 3.118956 CCAACGAGAACCATTAGAGAGCT 60.119 47.826 0.00 0.00 0.00 4.09
2033 4354 3.190874 CCAACGAGAACCATTAGAGAGC 58.809 50.000 0.00 0.00 0.00 4.09
2034 4355 4.457834 ACCAACGAGAACCATTAGAGAG 57.542 45.455 0.00 0.00 0.00 3.20
2035 4356 5.014858 ACTACCAACGAGAACCATTAGAGA 58.985 41.667 0.00 0.00 0.00 3.10
2036 4357 5.326200 ACTACCAACGAGAACCATTAGAG 57.674 43.478 0.00 0.00 0.00 2.43
2037 4358 5.948162 ACTACTACCAACGAGAACCATTAGA 59.052 40.000 0.00 0.00 0.00 2.10
2038 4359 6.205101 ACTACTACCAACGAGAACCATTAG 57.795 41.667 0.00 0.00 0.00 1.73
2039 4360 6.015180 ACAACTACTACCAACGAGAACCATTA 60.015 38.462 0.00 0.00 0.00 1.90
2040 4361 5.221581 ACAACTACTACCAACGAGAACCATT 60.222 40.000 0.00 0.00 0.00 3.16
2041 4362 4.282703 ACAACTACTACCAACGAGAACCAT 59.717 41.667 0.00 0.00 0.00 3.55
2042 4363 3.638160 ACAACTACTACCAACGAGAACCA 59.362 43.478 0.00 0.00 0.00 3.67
2043 4364 4.248691 ACAACTACTACCAACGAGAACC 57.751 45.455 0.00 0.00 0.00 3.62
2044 4365 5.521372 ACAAACAACTACTACCAACGAGAAC 59.479 40.000 0.00 0.00 0.00 3.01
2045 4366 5.663456 ACAAACAACTACTACCAACGAGAA 58.337 37.500 0.00 0.00 0.00 2.87
2046 4367 5.266733 ACAAACAACTACTACCAACGAGA 57.733 39.130 0.00 0.00 0.00 4.04
2047 4368 5.978934 AACAAACAACTACTACCAACGAG 57.021 39.130 0.00 0.00 0.00 4.18
2048 4369 6.740411 AAAACAAACAACTACTACCAACGA 57.260 33.333 0.00 0.00 0.00 3.85
2049 4370 7.799914 GGATAAAACAAACAACTACTACCAACG 59.200 37.037 0.00 0.00 0.00 4.10
2050 4371 8.623030 TGGATAAAACAAACAACTACTACCAAC 58.377 33.333 0.00 0.00 0.00 3.77
2051 4372 8.749026 TGGATAAAACAAACAACTACTACCAA 57.251 30.769 0.00 0.00 0.00 3.67
2052 4373 8.927675 ATGGATAAAACAAACAACTACTACCA 57.072 30.769 0.00 0.00 0.00 3.25
2056 4377 8.919145 TCCAAATGGATAAAACAAACAACTACT 58.081 29.630 0.00 0.00 39.78 2.57
2099 4428 5.957798 CATCAAGTGATGTAAAATGTGGCT 58.042 37.500 12.30 0.00 45.10 4.75
2127 4456 8.423349 CAAGGAAATGCAGAAATAATATTGGGA 58.577 33.333 0.00 0.00 0.00 4.37
2129 4458 9.252962 GACAAGGAAATGCAGAAATAATATTGG 57.747 33.333 0.00 0.00 0.00 3.16
2176 4505 8.165239 TGACAAGCAAACACTAATTTAGATGT 57.835 30.769 10.39 7.84 0.00 3.06
2177 4506 9.069078 CATGACAAGCAAACACTAATTTAGATG 57.931 33.333 10.39 7.28 0.00 2.90
2204 4536 5.868801 CAGGGCAACATTTACATGTAAAAGG 59.131 40.000 29.44 25.29 43.34 3.11
2208 4540 6.242396 AGTACAGGGCAACATTTACATGTAA 58.758 36.000 14.35 14.35 43.34 2.41
2210 4542 4.662278 AGTACAGGGCAACATTTACATGT 58.338 39.130 2.69 2.69 46.34 3.21
2218 4550 5.366768 ACTGATACATAGTACAGGGCAACAT 59.633 40.000 0.00 0.00 39.74 2.71
2225 4557 6.873997 TGAAACCACTGATACATAGTACAGG 58.126 40.000 0.00 0.00 35.08 4.00
2290 4622 1.142667 TGTTGCCAACCTGATGACAGA 59.857 47.619 4.90 0.00 46.03 3.41
2390 4722 0.937304 TCAGCTTGTCGTTGTTGAGC 59.063 50.000 0.00 0.00 0.00 4.26
2425 4757 1.293179 CTGATGACCTCACCACGCA 59.707 57.895 0.00 0.00 0.00 5.24
2566 4899 2.695613 GCTTCTGCTCAGGAAACAAC 57.304 50.000 0.00 0.00 36.03 3.32
2759 5101 3.082548 TCAGAAGGAACTCGTAGGACAG 58.917 50.000 0.00 0.00 38.49 3.51
2763 5105 3.428316 GCTTCTCAGAAGGAACTCGTAGG 60.428 52.174 16.46 0.00 38.49 3.18
2777 5119 2.093941 CGTGAAATCTGCAGCTTCTCAG 59.906 50.000 21.69 13.84 0.00 3.35
2852 5194 8.830201 AGCTATCATTTCACATAGATCTTGAC 57.170 34.615 0.00 0.00 0.00 3.18
2907 5252 7.961326 AGTTCCAACCATTTTATCAGCTTAT 57.039 32.000 0.00 0.00 0.00 1.73
2913 5258 5.304101 AGCACAAGTTCCAACCATTTTATCA 59.696 36.000 0.00 0.00 0.00 2.15
2924 5271 5.126869 TGAGAATTTTGAGCACAAGTTCCAA 59.873 36.000 15.33 1.80 37.32 3.53
2931 5278 4.644234 TGAGGTTGAGAATTTTGAGCACAA 59.356 37.500 0.00 0.00 0.00 3.33
2932 5279 4.206375 TGAGGTTGAGAATTTTGAGCACA 58.794 39.130 0.00 0.00 0.00 4.57
2952 5299 4.402474 CCATGCGGTACTCCATATCTATGA 59.598 45.833 0.00 0.00 35.75 2.15
2991 5400 8.005388 TGCTTACAGAGGGAGTAGTATTTATCT 58.995 37.037 0.00 0.00 0.00 1.98
2997 5406 6.686632 GCATTTGCTTACAGAGGGAGTAGTAT 60.687 42.308 0.00 0.00 38.21 2.12
2998 5407 5.395324 GCATTTGCTTACAGAGGGAGTAGTA 60.395 44.000 0.00 0.00 38.21 1.82
2999 5408 4.624125 GCATTTGCTTACAGAGGGAGTAGT 60.624 45.833 0.00 0.00 38.21 2.73
3000 5409 3.873952 GCATTTGCTTACAGAGGGAGTAG 59.126 47.826 0.00 0.00 38.21 2.57
3001 5410 3.263170 TGCATTTGCTTACAGAGGGAGTA 59.737 43.478 3.94 0.00 42.66 2.59
3002 5411 2.040278 TGCATTTGCTTACAGAGGGAGT 59.960 45.455 3.94 0.00 42.66 3.85
3003 5412 2.421424 GTGCATTTGCTTACAGAGGGAG 59.579 50.000 3.94 0.00 42.66 4.30
3004 5413 2.040278 AGTGCATTTGCTTACAGAGGGA 59.960 45.455 3.94 0.00 42.66 4.20
3005 5414 2.440409 AGTGCATTTGCTTACAGAGGG 58.560 47.619 3.94 0.00 42.66 4.30
3006 5415 4.256920 AGTAGTGCATTTGCTTACAGAGG 58.743 43.478 15.23 0.00 42.66 3.69
3007 5416 5.409520 TGAAGTAGTGCATTTGCTTACAGAG 59.590 40.000 15.23 0.00 42.66 3.35
3008 5417 5.304778 TGAAGTAGTGCATTTGCTTACAGA 58.695 37.500 15.23 2.43 42.66 3.41
3009 5418 5.611796 TGAAGTAGTGCATTTGCTTACAG 57.388 39.130 15.23 0.00 42.66 2.74
3010 5419 6.206438 TCATTGAAGTAGTGCATTTGCTTACA 59.794 34.615 15.23 3.62 42.66 2.41
3011 5420 6.611381 TCATTGAAGTAGTGCATTTGCTTAC 58.389 36.000 3.94 6.84 42.66 2.34
3012 5421 6.816134 TCATTGAAGTAGTGCATTTGCTTA 57.184 33.333 3.94 0.00 42.66 3.09
3013 5422 5.710513 TCATTGAAGTAGTGCATTTGCTT 57.289 34.783 3.94 4.61 42.66 3.91
3014 5423 5.651139 AGATCATTGAAGTAGTGCATTTGCT 59.349 36.000 3.94 0.00 42.66 3.91
3015 5424 5.888105 AGATCATTGAAGTAGTGCATTTGC 58.112 37.500 0.00 0.00 42.50 3.68
3016 5425 9.282247 GTTTAGATCATTGAAGTAGTGCATTTG 57.718 33.333 0.00 0.00 0.00 2.32
3017 5426 8.177663 CGTTTAGATCATTGAAGTAGTGCATTT 58.822 33.333 0.00 0.00 0.00 2.32
3018 5427 7.677276 GCGTTTAGATCATTGAAGTAGTGCATT 60.677 37.037 0.00 0.00 0.00 3.56
3019 5428 6.238211 GCGTTTAGATCATTGAAGTAGTGCAT 60.238 38.462 0.00 0.00 0.00 3.96
3020 5429 5.063438 GCGTTTAGATCATTGAAGTAGTGCA 59.937 40.000 0.00 0.00 0.00 4.57
3021 5430 5.292101 AGCGTTTAGATCATTGAAGTAGTGC 59.708 40.000 0.00 0.00 0.00 4.40
3022 5431 6.754209 AGAGCGTTTAGATCATTGAAGTAGTG 59.246 38.462 0.00 0.00 37.82 2.74
3023 5432 6.868622 AGAGCGTTTAGATCATTGAAGTAGT 58.131 36.000 0.00 0.00 37.82 2.73
3024 5433 7.763172 AAGAGCGTTTAGATCATTGAAGTAG 57.237 36.000 0.00 0.00 37.82 2.57
3026 5435 9.817809 TTATAAGAGCGTTTAGATCATTGAAGT 57.182 29.630 0.00 0.00 37.82 3.01
3039 5448 8.718734 CCTCTGTAAACTTTTATAAGAGCGTTT 58.281 33.333 13.76 6.02 36.27 3.60
3040 5449 7.333672 CCCTCTGTAAACTTTTATAAGAGCGTT 59.666 37.037 13.76 1.38 36.27 4.84
3041 5450 6.817140 CCCTCTGTAAACTTTTATAAGAGCGT 59.183 38.462 13.76 0.00 36.27 5.07
3042 5451 7.039882 TCCCTCTGTAAACTTTTATAAGAGCG 58.960 38.462 13.76 9.07 36.27 5.03
3043 5452 8.041919 ACTCCCTCTGTAAACTTTTATAAGAGC 58.958 37.037 13.76 0.00 36.27 4.09
3046 5455 9.819267 CCTACTCCCTCTGTAAACTTTTATAAG 57.181 37.037 0.00 0.00 37.40 1.73
3047 5456 9.330220 ACCTACTCCCTCTGTAAACTTTTATAA 57.670 33.333 0.00 0.00 0.00 0.98
3048 5457 8.906238 ACCTACTCCCTCTGTAAACTTTTATA 57.094 34.615 0.00 0.00 0.00 0.98
3049 5458 7.809880 ACCTACTCCCTCTGTAAACTTTTAT 57.190 36.000 0.00 0.00 0.00 1.40
3050 5459 7.622502 AACCTACTCCCTCTGTAAACTTTTA 57.377 36.000 0.00 0.00 0.00 1.52
3051 5460 6.511017 AACCTACTCCCTCTGTAAACTTTT 57.489 37.500 0.00 0.00 0.00 2.27
3052 5461 6.511017 AAACCTACTCCCTCTGTAAACTTT 57.489 37.500 0.00 0.00 0.00 2.66
3053 5462 6.511017 AAAACCTACTCCCTCTGTAAACTT 57.489 37.500 0.00 0.00 0.00 2.66
3054 5463 6.511017 AAAAACCTACTCCCTCTGTAAACT 57.489 37.500 0.00 0.00 0.00 2.66
3081 5490 7.331687 GGAGTACTAAACTTATTTACGTGGCAA 59.668 37.037 0.00 0.00 39.07 4.52
3088 5497 9.645059 AACGAAGGGAGTACTAAACTTATTTAC 57.355 33.333 0.00 0.00 39.07 2.01
3094 5503 4.590222 TGGAACGAAGGGAGTACTAAACTT 59.410 41.667 0.00 0.22 39.07 2.66
3095 5504 4.154942 TGGAACGAAGGGAGTACTAAACT 58.845 43.478 0.00 0.00 42.80 2.66
3096 5505 4.525912 TGGAACGAAGGGAGTACTAAAC 57.474 45.455 0.00 0.00 0.00 2.01
3098 5507 5.549742 TTTTGGAACGAAGGGAGTACTAA 57.450 39.130 0.00 0.00 0.00 2.24
3101 5514 5.001874 AGAATTTTGGAACGAAGGGAGTAC 58.998 41.667 0.00 0.00 0.00 2.73
3107 5520 6.902224 AAAACAAGAATTTTGGAACGAAGG 57.098 33.333 0.00 0.00 30.56 3.46
3222 5664 5.335935 ACATCATCGCTCTACTTATATGCG 58.664 41.667 0.00 0.00 46.71 4.73
3239 5681 7.417342 CCCAATCCAAAACCGTTTATACATCAT 60.417 37.037 0.00 0.00 0.00 2.45
3240 5682 6.127591 CCCAATCCAAAACCGTTTATACATCA 60.128 38.462 0.00 0.00 0.00 3.07
3242 5684 5.717654 ACCCAATCCAAAACCGTTTATACAT 59.282 36.000 0.00 0.00 0.00 2.29
3243 5685 5.078256 ACCCAATCCAAAACCGTTTATACA 58.922 37.500 0.00 0.00 0.00 2.29
3244 5686 5.648178 ACCCAATCCAAAACCGTTTATAC 57.352 39.130 0.00 0.00 0.00 1.47
3245 5687 6.483405 AGTACCCAATCCAAAACCGTTTATA 58.517 36.000 0.00 0.00 0.00 0.98
3246 5688 5.326900 AGTACCCAATCCAAAACCGTTTAT 58.673 37.500 0.00 0.00 0.00 1.40
3247 5689 4.727677 AGTACCCAATCCAAAACCGTTTA 58.272 39.130 0.00 0.00 0.00 2.01
3248 5690 3.568443 AGTACCCAATCCAAAACCGTTT 58.432 40.909 0.00 0.00 0.00 3.60
3249 5691 3.232720 AGTACCCAATCCAAAACCGTT 57.767 42.857 0.00 0.00 0.00 4.44
3250 5692 2.963599 AGTACCCAATCCAAAACCGT 57.036 45.000 0.00 0.00 0.00 4.83
3252 5694 4.341487 AGCTAAGTACCCAATCCAAAACC 58.659 43.478 0.00 0.00 0.00 3.27
3253 5695 4.398358 GGAGCTAAGTACCCAATCCAAAAC 59.602 45.833 0.00 0.00 0.00 2.43
3254 5696 4.569015 GGGAGCTAAGTACCCAATCCAAAA 60.569 45.833 2.53 0.00 42.81 2.44
3255 5697 3.053917 GGGAGCTAAGTACCCAATCCAAA 60.054 47.826 2.53 0.00 42.81 3.28
3256 5698 2.508300 GGGAGCTAAGTACCCAATCCAA 59.492 50.000 2.53 0.00 42.81 3.53
3257 5699 2.124411 GGGAGCTAAGTACCCAATCCA 58.876 52.381 2.53 0.00 42.81 3.41
3258 5700 2.409570 AGGGAGCTAAGTACCCAATCC 58.590 52.381 9.94 0.00 45.43 3.01
3262 5704 2.337359 ACAAGGGAGCTAAGTACCCA 57.663 50.000 9.94 0.00 45.43 4.51
3264 5706 2.418334 CCGAACAAGGGAGCTAAGTACC 60.418 54.545 0.00 0.00 0.00 3.34
3265 5707 2.494870 TCCGAACAAGGGAGCTAAGTAC 59.505 50.000 0.00 0.00 0.00 2.73
3266 5708 2.494870 GTCCGAACAAGGGAGCTAAGTA 59.505 50.000 0.00 0.00 33.31 2.24
3267 5709 1.275573 GTCCGAACAAGGGAGCTAAGT 59.724 52.381 0.00 0.00 33.31 2.24
3269 5711 0.611714 GGTCCGAACAAGGGAGCTAA 59.388 55.000 2.96 0.00 46.11 3.09
3270 5712 2.283824 GGTCCGAACAAGGGAGCTA 58.716 57.895 2.96 0.00 46.11 3.32
3271 5713 3.069778 GGTCCGAACAAGGGAGCT 58.930 61.111 2.96 0.00 46.11 4.09
3272 5714 2.434359 CGGTCCGAACAAGGGAGC 60.434 66.667 4.91 0.11 46.13 4.70
3273 5715 1.601419 TAGCGGTCCGAACAAGGGAG 61.601 60.000 17.49 0.00 33.31 4.30
3274 5716 1.601419 CTAGCGGTCCGAACAAGGGA 61.601 60.000 17.49 0.00 0.00 4.20
3276 5718 0.458025 GTCTAGCGGTCCGAACAAGG 60.458 60.000 17.49 0.00 0.00 3.61
3278 5720 0.038892 GTGTCTAGCGGTCCGAACAA 60.039 55.000 17.49 0.00 0.00 2.83
3280 5722 0.038892 TTGTGTCTAGCGGTCCGAAC 60.039 55.000 17.49 7.49 0.00 3.95
3282 5724 1.582968 GTTGTGTCTAGCGGTCCGA 59.417 57.895 17.49 0.00 0.00 4.55
3283 5725 1.445582 GGTTGTGTCTAGCGGTCCG 60.446 63.158 6.99 6.99 0.00 4.79
3284 5726 0.669625 GTGGTTGTGTCTAGCGGTCC 60.670 60.000 0.00 0.00 0.00 4.46
3285 5727 0.669625 GGTGGTTGTGTCTAGCGGTC 60.670 60.000 0.00 0.00 0.00 4.79
3286 5728 1.119574 AGGTGGTTGTGTCTAGCGGT 61.120 55.000 0.00 0.00 0.00 5.68
3287 5729 0.670546 CAGGTGGTTGTGTCTAGCGG 60.671 60.000 0.00 0.00 0.00 5.52
3288 5730 0.033504 ACAGGTGGTTGTGTCTAGCG 59.966 55.000 0.00 0.00 0.00 4.26
3290 5732 2.169832 CCACAGGTGGTTGTGTCTAG 57.830 55.000 10.34 0.00 45.44 2.43
3339 5847 1.527433 GGTTGAGGGAAGGCAGCAAC 61.527 60.000 0.00 0.00 38.40 4.17
3345 5853 1.674651 GGAACGGTTGAGGGAAGGC 60.675 63.158 0.00 0.00 0.00 4.35
3380 6078 5.520748 AAATGTGAGAGGTTTACAGGGAT 57.479 39.130 0.00 0.00 0.00 3.85
3381 6079 4.993705 AAATGTGAGAGGTTTACAGGGA 57.006 40.909 0.00 0.00 0.00 4.20
3382 6080 7.447238 TCTTAAAAATGTGAGAGGTTTACAGGG 59.553 37.037 0.00 0.00 0.00 4.45
3383 6081 8.391075 TCTTAAAAATGTGAGAGGTTTACAGG 57.609 34.615 0.00 0.00 0.00 4.00
3437 6262 5.607119 AGACAAGTACGCTTAATTTGTGG 57.393 39.130 6.22 0.00 32.58 4.17
3440 6265 5.856455 CCCAAAGACAAGTACGCTTAATTTG 59.144 40.000 0.00 0.00 34.22 2.32
3445 6270 2.872842 GCCCCAAAGACAAGTACGCTTA 60.873 50.000 0.00 0.00 32.87 3.09
3449 6274 1.600023 TTGCCCCAAAGACAAGTACG 58.400 50.000 0.00 0.00 0.00 3.67
3464 6322 0.469144 TGGGGTTTCACTCCTTTGCC 60.469 55.000 0.00 0.00 40.26 4.52
3466 6324 0.961753 GCTGGGGTTTCACTCCTTTG 59.038 55.000 0.00 0.00 40.26 2.77
3484 6342 1.068250 CCGATTCTTCCTCGAGGGC 59.932 63.158 30.80 12.36 38.38 5.19
3487 6345 3.795623 TTTACCCGATTCTTCCTCGAG 57.204 47.619 5.13 5.13 38.38 4.04
3489 6347 3.858247 AGTTTTACCCGATTCTTCCTCG 58.142 45.455 0.00 0.00 35.92 4.63
3493 6353 6.738832 AGCTTAAGTTTTACCCGATTCTTC 57.261 37.500 4.02 0.00 0.00 2.87
3497 6357 7.392418 AGAGTTAGCTTAAGTTTTACCCGATT 58.608 34.615 4.02 0.00 0.00 3.34
3501 6361 5.579904 CGGAGAGTTAGCTTAAGTTTTACCC 59.420 44.000 4.02 0.00 0.00 3.69
3505 6365 6.099159 AGACGGAGAGTTAGCTTAAGTTTT 57.901 37.500 4.02 0.00 0.00 2.43
3513 6373 4.279145 TCCAATAAGACGGAGAGTTAGCT 58.721 43.478 0.00 0.00 0.00 3.32
3514 6374 4.650754 TCCAATAAGACGGAGAGTTAGC 57.349 45.455 0.00 0.00 0.00 3.09
3515 6375 6.864342 TCTTTCCAATAAGACGGAGAGTTAG 58.136 40.000 0.00 0.00 35.52 2.34
3516 6376 6.845758 TCTTTCCAATAAGACGGAGAGTTA 57.154 37.500 0.00 0.00 35.52 2.24
3518 6378 5.246429 ACTTCTTTCCAATAAGACGGAGAGT 59.754 40.000 0.00 0.00 35.52 3.24
3519 6379 5.725362 ACTTCTTTCCAATAAGACGGAGAG 58.275 41.667 0.00 0.00 35.37 3.20
3521 6381 5.390991 GCAACTTCTTTCCAATAAGACGGAG 60.391 44.000 0.00 0.00 34.04 4.63
3522 6382 4.454504 GCAACTTCTTTCCAATAAGACGGA 59.545 41.667 0.00 0.00 34.04 4.69
3530 6390 2.027837 GGCATGGCAACTTCTTTCCAAT 60.028 45.455 15.47 0.00 37.61 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.